Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60800.t1 | XP_024641456.1 | 96.9 | 228 | 7 | 0 | 1 | 228 | 1 | 228 | 1.70E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60800.t1 | A0A396JVI3 | 96.9 | 228 | 7 | 0 | 1 | 228 | 1 | 228 | 1.2e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60800.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049910 | MS.gene60800 | 0.843299 | 1.53E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene60800 | 0.822331 | 2.51E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene60800 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene60800 | 0.839509 | 1.52E-57 | -1.69E-46 |
| MS.gene051360 | MS.gene60800 | 0.819309 | 1.24E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene60800 | 0.820817 | 5.61E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene60800 | 0.842389 | 2.67E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene60800 | 0.835164 | 1.97E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene60800 | 0.819077 | 1.40E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene60800 | -0.825645 | 4.19E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene60800 | 0.803994 | 2.67E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene60800 | 0.836862 | 7.30E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene60800 | 0.801604 | 8.32E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene60800 | 0.826996 | 2.00E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene60800 | 0.801268 | 9.76E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene60800 | 0.813795 | 2.14E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene60800 | 0.811714 | 6.10E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene60800 | 0.801339 | 9.44E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene60800 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene60800 | 0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene60800 | 0.804662 | 1.94E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene60800 | 0.822066 | 2.89E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene60800 | 0.809157 | 2.17E-50 | -1.69E-46 |
| MS.gene055666 | MS.gene60800 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene60800 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene60800 | 0.815779 | 7.76E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene60800 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene60800 | 0.815679 | 8.17E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene60800 | 0.801598 | 8.35E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene60800 | 0.807326 | 5.34E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene60800 | 0.84037 | 9.06E-58 | -1.69E-46 |
| MS.gene05886 | MS.gene60800 | 0.807061 | 6.08E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene60800 | 0.825887 | 3.67E-54 | -1.69E-46 |
| MS.gene059141 | MS.gene60800 | 0.812441 | 4.23E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene60800 | 0.818941 | 1.51E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene60800 | 0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene059688 | MS.gene60800 | 0.842642 | 2.28E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene60800 | 0.826501 | 2.62E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene60800 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene60800 | 0.829779 | 4.25E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene60800 | 0.808674 | 2.76E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene60800 | 0.813933 | 1.99E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene60800 | 0.842868 | 1.99E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene60800 | 0.818484 | 1.91E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene60800 | 0.84985 | 2.48E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60800.t1 | MTR_1g096340 | 96.698 | 212 | 7 | 0 | 17 | 228 | 1 | 212 | 2.86e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60800.t1 | AT4G09620 | 57.277 | 213 | 87 | 2 | 17 | 228 | 1 | 210 | 2.47e-79 | 237 |
| MS.gene60800.t1 | AT4G09620 | 57.277 | 213 | 87 | 2 | 17 | 228 | 3 | 212 | 2.58e-79 | 237 |
| MS.gene60800.t1 | AT4G09620 | 57.277 | 213 | 87 | 2 | 17 | 228 | 3 | 212 | 2.58e-79 | 237 |
Find 47 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTGTTCATTCTCCTTAC+TGG | 0.079985 | 1.2:-72172574 | MS.gene60800:CDS |
| TCCATATACTGCCTCAAATT+TGG | 0.111265 | 1.2:+72172526 | None:intergenic |
| CCTTCGAAATCCAAAAGTTT+TGG | 0.174584 | 1.2:-72172336 | MS.gene60800:CDS |
| CCCAAATTTGAGGCAGTATA+TGG | 0.228027 | 1.2:-72172527 | MS.gene60800:CDS |
| AAATTACATCCAAGAACTTC+TGG | 0.252185 | 1.2:+72172437 | None:intergenic |
| ATATTATAACCCAAAACTTT+TGG | 0.261186 | 1.2:+72172326 | None:intergenic |
| CCATATACTGCCTCAAATTT+GGG | 0.300623 | 1.2:+72172527 | None:intergenic |
| CCTTGTTCATTCTCCTTACT+GGG | 0.302250 | 1.2:-72172573 | MS.gene60800:CDS |
| CAATACTCCACTGCTCCTTC+AGG | 0.365711 | 1.2:+72172384 | None:intergenic |
| GGGTTATAATATTGATTGTA+AGG | 0.371787 | 1.2:-72172315 | MS.gene60800:CDS |
| GATATTTGGCGATGGAATAC+TGG | 0.376586 | 1.2:+72172796 | None:intergenic |
| AAGATACTTGGAAAAGCATT+TGG | 0.395197 | 1.2:-72172596 | MS.gene60800:CDS |
| TTGCTAATGCAGGTATGGTT+AGG | 0.405289 | 1.2:-72175096 | MS.gene60800:intron |
| ATGGAACATTAGATTATCTA+AGG | 0.412566 | 1.2:-72172508 | MS.gene60800:CDS |
| ATCGTGCAGGCTGATCTTGC+TGG | 0.416752 | 1.2:-72172827 | MS.gene60800:intron |
| CAAGAACTGTGCTGCAGAAT+CGG | 0.426988 | 1.2:+72175045 | None:intergenic |
| TGATTGTAAGGGAGATTGTA+AGG | 0.441638 | 1.2:-72172303 | MS.gene60800:CDS |
| GTATTGAAGGAAAATCTCTT+AGG | 0.453881 | 1.2:-72172367 | MS.gene60800:CDS |
| AGGCACAATGCACTAGATGC+TGG | 0.458361 | 1.2:-72172283 | MS.gene60800:CDS |
| CCTTCACCTTCTCGTCGCTC+TGG | 0.464197 | 1.2:-72175387 | MS.gene60800:intron |
| TAACTTCGACGATGAAGAAA+AGG | 0.469350 | 1.2:-72172621 | MS.gene60800:CDS |
| AAGGAGCAGTGGAGTATTGA+AGG | 0.472993 | 1.2:-72172380 | MS.gene60800:CDS |
| GAAGAAAAGGACAAGATACT+TGG | 0.482017 | 1.2:-72172608 | MS.gene60800:CDS |
| GTGATGAAGATCGGAGTATG+TGG | 0.505034 | 1.2:-72172673 | MS.gene60800:CDS |
| TCACGATCTTCTCCCCAGTA+AGG | 0.522126 | 1.2:+72172560 | None:intergenic |
| CAGAATCGGTAGCGAGAAGA+GGG | 0.534232 | 1.2:+72175059 | None:intergenic |
| CAAATCATTCTACCAACCAT+TGG | 0.536249 | 1.2:-72172736 | MS.gene60800:CDS |
| GGTTATAATATTGATTGTAA+GGG | 0.549473 | 1.2:-72172314 | MS.gene60800:CDS |
| TGGCGATGGAATACTGGAAG+AGG | 0.558839 | 1.2:+72172802 | None:intergenic |
| GGCACAATGCACTAGATGCT+GGG | 0.562129 | 1.2:-72172282 | MS.gene60800:CDS |
| GAAGGAAGTTCCCAAATTTG+AGG | 0.566069 | 1.2:-72172537 | MS.gene60800:CDS |
| TAATCTCAAGTGATGAAGAT+CGG | 0.572690 | 1.2:-72172682 | MS.gene60800:CDS |
| CCAGAGCGACGAGAAGGTGA+AGG | 0.582685 | 1.2:+72175387 | None:intergenic |
| CCCAGTAAGGAGAATGAACA+AGG | 0.586733 | 1.2:+72172573 | None:intergenic |
| CTTGTTCATTCTCCTTACTG+GGG | 0.596220 | 1.2:-72172572 | MS.gene60800:CDS |
| TAAAGATCCTGAAGGAGCAG+TGG | 0.596954 | 1.2:-72172391 | MS.gene60800:CDS |
| AGCACAGTTCTTGTGTTGCA+AGG | 0.601341 | 1.2:-72175035 | MS.gene60800:intron |
| ATGGTTGGTAGAATGATTTG+AGG | 0.603312 | 1.2:+72172739 | None:intergenic |
| AACTAACCAGAGCGACGAGA+AGG | 0.605348 | 1.2:+72175381 | None:intergenic |
| GCAGAATCGGTAGCGAGAAG+AGG | 0.606505 | 1.2:+72175058 | None:intergenic |
| AGAACGCAATATCCAATGGT+TGG | 0.612381 | 1.2:+72172724 | None:intergenic |
| TCGTAGAACGCAATATCCAA+TGG | 0.625607 | 1.2:+72172720 | None:intergenic |
| AGCTAATATAAAGATCCTGA+AGG | 0.630758 | 1.2:-72172399 | MS.gene60800:CDS |
| CTGGGGAGAAGATCGTGAGA+AGG | 0.634124 | 1.2:-72172555 | MS.gene60800:CDS |
| CAAGTCTTGCAAAAGCAAAG+TGG | 0.634464 | 1.2:-72172763 | MS.gene60800:CDS |
| TGATGAAGATCGGAGTATGT+GGG | 0.637812 | 1.2:-72172672 | MS.gene60800:CDS |
| AGAATCGGTAGCGAGAAGAG+GGG | 0.733500 | 1.2:+72175060 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTAATATTTATTTTCTAT+GGG | - | chr1.2:72172680-72172699 | MS.gene60800:CDS | 10.0% |
| !! | ACAAAAACAAAAAAACAAAT+TGG | + | chr1.2:72172440-72172459 | None:intergenic | 15.0% |
| !! | CATAGAAAATAAATATTAAG+AGG | + | chr1.2:72172681-72172700 | None:intergenic | 15.0% |
| !!! | CTCTTAATATTTATTTTCTA+TGG | - | chr1.2:72172679-72172698 | MS.gene60800:CDS | 15.0% |
| !!! | TTTAATTGTAAAGCTTTAAA+GGG | - | chr1.2:72173651-72173670 | MS.gene60800:intron | 15.0% |
| !!! | TTTTAATTGTAAAGCTTTAA+AGG | - | chr1.2:72173650-72173669 | MS.gene60800:intron | 15.0% |
| !! | AAAAAAATCTCAACATAACA+TGG | - | chr1.2:72172414-72172433 | MS.gene60800:CDS | 20.0% |
| !! | ATGCATAAGTTTAATATTGA+TGG | + | chr1.2:72174722-72174741 | None:intergenic | 20.0% |
| !! | ATTAATTGGTTATCTTTCTT+TGG | - | chr1.2:72173973-72173992 | MS.gene60800:intron | 20.0% |
| !! | CAGCAATAAATTACATTTAT+TGG | + | chr1.2:72172532-72172551 | None:intergenic | 20.0% |
| !! | TTACCATACATATTGATATT+AGG | - | chr1.2:72174422-72174441 | MS.gene60800:intron | 20.0% |
| !!! | AAAAAGAAAGTCAATGTTTT+TGG | + | chr1.2:72172351-72172370 | None:intergenic | 20.0% |
| !!! | AAAAGAAAGTCAATGTTTTT+GGG | + | chr1.2:72172350-72172369 | None:intergenic | 20.0% |
| !!! | ATATTATAACCCAAAACTTT+TGG | + | chr1.2:72175359-72175378 | None:intergenic | 20.0% |
| !!! | GGTTATAATATTGATTGTAA+GGG | - | chr1.2:72175368-72175387 | MS.gene60800:intron | 20.0% |
| !!! | TTTTAGGACTTTGTATTTAA+AGG | - | chr1.2:72174338-72174357 | MS.gene60800:intron | 20.0% |
| ! | AAAAAATTTCCAGAAGTTCT+TGG | - | chr1.2:72175236-72175255 | MS.gene60800:intron | 25.0% |
| ! | AATCCTTAATATGGATGTTT+GGG | + | chr1.2:72172928-72172947 | None:intergenic | 25.0% |
| ! | AGAATGCATAGTAGATTAAT+TGG | - | chr1.2:72173959-72173978 | MS.gene60800:intron | 25.0% |
| ! | ATCAATATGTATGGTAAACA+TGG | + | chr1.2:72174419-72174438 | None:intergenic | 25.0% |
| ! | ATCTCCATATATTCATACTT+TGG | + | chr1.2:72172865-72172884 | None:intergenic | 25.0% |
| ! | ATGATATGTAACCTATATCT+AGG | + | chr1.2:72174574-72174593 | None:intergenic | 25.0% |
| ! | ATGGAACATTAGATTATCTA+AGG | - | chr1.2:72175174-72175193 | MS.gene60800:intron | 25.0% |
| ! | ATGTAAAAAAATTCACTGGT+AGG | - | chr1.2:72174785-72174804 | MS.gene60800:intron | 25.0% |
| ! | CAAGATGTAAAAAAATTCAC+TGG | - | chr1.2:72174781-72174800 | MS.gene60800:intron | 25.0% |
| ! | GGTTGAAAAAAACTTGAATT+TGG | - | chr1.2:72173727-72173746 | MS.gene60800:intron | 25.0% |
| ! | GTATTTAAAGGATATCTTCA+TGG | - | chr1.2:72174350-72174369 | MS.gene60800:intron | 25.0% |
| ! | GTTACTGTATTATTGAATTG+TGG | - | chr1.2:72172826-72172845 | MS.gene60800:intron | 25.0% |
| ! | TAGCCTAATATCAATATGTA+TGG | + | chr1.2:72174428-72174447 | None:intergenic | 25.0% |
| ! | TAGTACAAAATGTTGTCAAA+TGG | + | chr1.2:72174099-72174118 | None:intergenic | 25.0% |
| ! | TCTCCATATATTCATACTTT+GGG | + | chr1.2:72172864-72172883 | None:intergenic | 25.0% |
| ! | TCTCTACAATATGTTTAGAA+AGG | - | chr1.2:72172776-72172795 | MS.gene60800:CDS | 25.0% |
| ! | TGAATTTGGTTATTCTTTGT+TGG | - | chr1.2:72173741-72173760 | MS.gene60800:intron | 25.0% |
| !! | ATATGTTTAGAAAGGTGTAA+TGG | - | chr1.2:72172784-72172803 | MS.gene60800:CDS | 25.0% |
| !! | GGGTTATAATATTGATTGTA+AGG | - | chr1.2:72175367-72175386 | MS.gene60800:intron | 25.0% |
| !! | TATGTTTAGAAAGGTGTAAT+GGG | - | chr1.2:72172785-72172804 | MS.gene60800:CDS | 25.0% |
| !! | TTTTGTACTAAATAGTGCAT+CGG | - | chr1.2:72174109-72174128 | MS.gene60800:intron | 25.0% |
| !!! | ATTGACTTTCTTTTTCAACA+TGG | - | chr1.2:72172356-72172375 | MS.gene60800:CDS | 25.0% |
| !!! | TATTTATTTTCTATGGGTTG+TGG | - | chr1.2:72172686-72172705 | MS.gene60800:CDS | 25.0% |
| !!! | TGGAAATTTTTTAAGCAACT+TGG | + | chr1.2:72175228-72175247 | None:intergenic | 25.0% |
| !!! | TGTTATTTTTTTGCTAATGC+AGG | - | chr1.2:72172576-72172595 | MS.gene60800:CDS | 25.0% |
| !!! | TTGACTTTCTTTTTCAACAT+GGG | - | chr1.2:72172357-72172376 | MS.gene60800:CDS | 25.0% |
| !!! | TTTTGGTTTTATCAGTATGT+AGG | - | chr1.2:72172492-72172511 | MS.gene60800:CDS | 25.0% |
| !!! | TTTTTGGGAAGAAATTGAAA+AGG | + | chr1.2:72172335-72172354 | None:intergenic | 25.0% |
| AAAAATCTGATATTTGGCGA+TGG | + | chr1.2:72174897-72174916 | None:intergenic | 30.0% | |
| AAATTACATCCAAGAACTTC+TGG | + | chr1.2:72175248-72175267 | None:intergenic | 30.0% | |
| ACAAAGTCCTAAAAGACATT+GGG | + | chr1.2:72174332-72174351 | None:intergenic | 30.0% | |
| ACTCCCAAAGTATGAATATA+TGG | - | chr1.2:72172858-72172877 | MS.gene60800:intron | 30.0% | |
| AGCTAATATAAAGATCCTGA+AGG | - | chr1.2:72175283-72175302 | MS.gene60800:intron | 30.0% | |
| AGGATTGTGAATCCTTAATA+TGG | + | chr1.2:72172937-72172956 | None:intergenic | 30.0% | |
| AGTAACGATATACTAGTTGA+TGG | - | chr1.2:72173789-72173808 | MS.gene60800:intron | 30.0% | |
| ATCTTGGCAATAATTGGAAA+TGG | - | chr1.2:72173451-72173470 | MS.gene60800:intron | 30.0% | |
| ATTTGTATGTGTGTAGGAAA+TGG | - | chr1.2:72172712-72172731 | MS.gene60800:CDS | 30.0% | |
| CAAGCATTCAAAATTAACCA+TGG | - | chr1.2:72174241-72174260 | MS.gene60800:intron | 30.0% | |
| CTTGGCAAAAATCTGATATT+TGG | + | chr1.2:72174903-72174922 | None:intergenic | 30.0% | |
| GAATCCTTAATATGGATGTT+TGG | + | chr1.2:72172929-72172948 | None:intergenic | 30.0% | |
| GACTTTAAATTCCAGTCTAT+GGG | + | chr1.2:72174310-72174329 | None:intergenic | 30.0% | |
| GTATTGAAGGAAAATCTCTT+AGG | - | chr1.2:72175315-72175334 | MS.gene60800:intron | 30.0% | |
| TAATCTCAAGTGATGAAGAT+CGG | - | chr1.2:72175000-72175019 | MS.gene60800:intron | 30.0% | |
| TACAAAATGTTGTCAAATGG+TGG | + | chr1.2:72174096-72174115 | None:intergenic | 30.0% | |
| TACAAAGTCCTAAAAGACAT+TGG | + | chr1.2:72174333-72174352 | None:intergenic | 30.0% | |
| TGAAGTTAGGATAATGATGT+AGG | - | chr1.2:72173170-72173189 | MS.gene60800:intron | 30.0% | |
| TTAATATGGATGTTTGGGTA+AGG | + | chr1.2:72172923-72172942 | None:intergenic | 30.0% | |
| TTACCCAAACATCCATATTA+AGG | - | chr1.2:72172922-72172941 | MS.gene60800:intron | 30.0% | |
| TTCCAATTATTGCCAAGATT+GGG | + | chr1.2:72173450-72173469 | None:intergenic | 30.0% | |
| TTTCCAATTATTGCCAAGAT+TGG | + | chr1.2:72173451-72173470 | None:intergenic | 30.0% | |
| TTTGTACTAAATAGTGCATC+GGG | - | chr1.2:72174110-72174129 | MS.gene60800:intron | 30.0% | |
| ! | AAGATTTTTGAATTCTGCTG+TGG | - | chr1.2:72174628-72174647 | MS.gene60800:intron | 30.0% |
| ! | ACCTTTAATTTCACAAGACA+GGG | + | chr1.2:72173590-72173609 | None:intergenic | 30.0% |
| ! | ATATTTAACTTCCCATAGAC+TGG | - | chr1.2:72174296-72174315 | MS.gene60800:intron | 30.0% |
| ! | CAATTGTTGATGAAAAGCAT+TGG | + | chr1.2:72173815-72173834 | None:intergenic | 30.0% |
| ! | CTAAAACTGGATTCTTTTCA+AGG | + | chr1.2:72174465-72174484 | None:intergenic | 30.0% |
| ! | CTTCGAAATCCAAAAGTTTT+GGG | - | chr1.2:72175347-72175366 | MS.gene60800:intron | 30.0% |
| ! | TCATGGTTTCATACTTTTGT+TGG | - | chr1.2:72174367-72174386 | MS.gene60800:intron | 30.0% |
| ! | TGGGACAAAATGAATTTTGA+AGG | - | chr1.2:72172804-72172823 | MS.gene60800:CDS | 30.0% |
| ! | TTAAAGTCCCAATGTCTTTT+AGG | - | chr1.2:72174322-72174341 | MS.gene60800:intron | 30.0% |
| !! | AAGATACTTGGAAAAGCATT+TGG | - | chr1.2:72175086-72175105 | MS.gene60800:CDS | 30.0% |
| !! | ATTCTTCTAGAATGCTTTGT+TGG | - | chr1.2:72173060-72173079 | MS.gene60800:intron | 30.0% |
| !! | TTAAAGAGGAAGGTATTGTA+AGG | + | chr1.2:72173121-72173140 | None:intergenic | 30.0% |
| !!! | AAAGAATCCAGTTTTAGTTC+TGG | - | chr1.2:72174468-72174487 | MS.gene60800:intron | 30.0% |
| !!! | ATGAGAGAGCTTTTAGAATA+AGG | - | chr1.2:72172883-72172902 | MS.gene60800:intron | 30.0% |
| !!! | TGAGAGAGCTTTTAGAATAA+GGG | - | chr1.2:72172884-72172903 | MS.gene60800:intron | 30.0% |
| !!! | TTTTTTTGCTAATGCAGGTA+TGG | - | chr1.2:72172581-72172600 | MS.gene60800:CDS | 30.0% |
| AATCCAATAAGCTGGTTGAA+TGG | - | chr1.2:72173899-72173918 | MS.gene60800:intron | 35.0% | |
| AATGTTCCAATTTCCAACTC+TGG | + | chr1.2:72174758-72174777 | None:intergenic | 35.0% | |
| AATTATTGCCAAGATTGGGA+TGG | + | chr1.2:72173446-72173465 | None:intergenic | 35.0% | |
| ACTTATGCATACAGATCCAA+AGG | - | chr1.2:72174732-72174751 | MS.gene60800:intron | 35.0% | |
| AGCTGGGATATGTAAAAAAC+TGG | - | chr1.2:72173379-72173398 | MS.gene60800:intron | 35.0% | |
| AGGATAATGATGTAGGATAC+TGG | - | chr1.2:72173177-72173196 | MS.gene60800:intron | 35.0% | |
| ATCCCAATCTTGGCAATAAT+TGG | - | chr1.2:72173445-72173464 | MS.gene60800:intron | 35.0% | |
| CAAATCATTCTACCAACCAT+TGG | - | chr1.2:72174946-72174965 | MS.gene60800:intron | 35.0% | |
| CCATATACTGCCTCAAATTT+GGG | + | chr1.2:72175158-72175177 | None:intergenic | 35.0% | |
| GAAGAAAAGGACAAGATACT+TGG | - | chr1.2:72175074-72175093 | MS.gene60800:CDS | 35.0% | |
| GCTGGGATATGTAAAAAACT+GGG | - | chr1.2:72173380-72173399 | MS.gene60800:intron | 35.0% | |
| GGACTTTAAATTCCAGTCTA+TGG | + | chr1.2:72174311-72174330 | None:intergenic | 35.0% | |
| GTATGTAGGTTCTTCATGTT+TGG | - | chr1.2:72172506-72172525 | MS.gene60800:CDS | 35.0% | |
| TAACTTCGACGATGAAGAAA+AGG | - | chr1.2:72175061-72175080 | MS.gene60800:CDS | 35.0% | |
| TACTACATCCATAGCCAAAA+TGG | + | chr1.2:72173854-72173873 | None:intergenic | 35.0% | |
| TCCATATACTGCCTCAAATT+TGG | + | chr1.2:72175159-72175178 | None:intergenic | 35.0% | |
| TCCCTGTCTTGTGAAATTAA+AGG | - | chr1.2:72173586-72173605 | MS.gene60800:intron | 35.0% | |
| TCTCTTAAACAGTTTCAGCT+GGG | - | chr1.2:72173363-72173382 | MS.gene60800:intron | 35.0% | |
| TCTTCAGCATACCTAGATAT+AGG | - | chr1.2:72174560-72174579 | MS.gene60800:intron | 35.0% | |
| TGATTGTAAGGGAGATTGTA+AGG | - | chr1.2:72175379-72175398 | MS.gene60800:intron | 35.0% | |
| TTATCCTAACTTCAACCTTG+AGG | + | chr1.2:72173164-72173183 | None:intergenic | 35.0% | |
| TTGTACTAAATAGTGCATCG+GGG | - | chr1.2:72174111-72174130 | MS.gene60800:intron | 35.0% | |
| ! | AAGCATTCTAGAAGAATCGA+TGG | + | chr1.2:72173057-72173076 | None:intergenic | 35.0% |
| ! | AGCATTCTAGAAGAATCGAT+GGG | + | chr1.2:72173056-72173075 | None:intergenic | 35.0% |
| ! | ATTAAGACTAGTCATCTCAC+AGG | - | chr1.2:72172963-72172982 | MS.gene60800:intron | 35.0% |
| ! | CCAAAACTTTTGGATTTCGA+AGG | + | chr1.2:72175349-72175368 | None:intergenic | 35.0% |
| ! | CCTTCGAAATCCAAAAGTTT+TGG | - | chr1.2:72175346-72175365 | MS.gene60800:intron | 35.0% |
| ! | GACCTTTAATTTCACAAGAC+AGG | + | chr1.2:72173591-72173610 | None:intergenic | 35.0% |
| ! | GTTTTACGGTGACTATCATA+TGG | - | chr1.2:72174158-72174177 | MS.gene60800:intron | 35.0% |
| !! | AAGGTCGATTTTAAAGAGGA+AGG | + | chr1.2:72173131-72173150 | None:intergenic | 35.0% |
| !! | ATGGTTGGTAGAATGATTTG+AGG | + | chr1.2:72174946-72174965 | None:intergenic | 35.0% |
| !! | CGTACACAATTTTTAGACTC+TGG | + | chr1.2:72174835-72174854 | None:intergenic | 35.0% |
| !! | CTCCATTCTGATTCGTTTTA+CGG | - | chr1.2:72174144-72174163 | MS.gene60800:intron | 35.0% |
| !! | GGTTATCTTTCTTTGGAGTT+AGG | - | chr1.2:72173980-72173999 | MS.gene60800:intron | 35.0% |
| !! | TGACTAGTCTTAATAGAGTG+AGG | + | chr1.2:72172957-72172976 | None:intergenic | 35.0% |
| !! | TTAGAGGGTTGACTTTGTTT+TGG | - | chr1.2:72172475-72172494 | MS.gene60800:CDS | 35.0% |
| !! | TTATTTTCTATGGGTTGTGG+TGG | - | chr1.2:72172689-72172708 | MS.gene60800:CDS | 35.0% |
| !!! | AGCTTTTAGAATAAGGGAAG+AGG | - | chr1.2:72172890-72172909 | MS.gene60800:intron | 35.0% |
| AAAATTGTGTACGATCGTGC+AGG | - | chr1.2:72174842-72174861 | MS.gene60800:intron | 40.0% | |
| AAATTCACTGGTAGGACTGT+AGG | - | chr1.2:72174793-72174812 | MS.gene60800:intron | 40.0% | |
| ACAGTAAGCTCTTGTTCAGT+GGG | + | chr1.2:72173242-72173261 | None:intergenic | 40.0% | |
| ACTGTCCTTGAATGATCTCA+CGG | - | chr1.2:72173257-72173276 | MS.gene60800:intron | 40.0% | |
| AGAACGCAATATCCAATGGT+TGG | + | chr1.2:72174961-72174980 | None:intergenic | 40.0% | |
| ATCTGTGATTGACAATGCTG+AGG | + | chr1.2:72174007-72174026 | None:intergenic | 40.0% | |
| CAACCATTCAACCAGCTTAT+TGG | + | chr1.2:72173905-72173924 | None:intergenic | 40.0% | |
| CAAGTCTTGCAAAAGCAAAG+TGG | - | chr1.2:72174919-72174938 | MS.gene60800:intron | 40.0% | |
| CAATAAGCTGGTTGAATGGT+TGG | - | chr1.2:72173903-72173922 | MS.gene60800:intron | 40.0% | |
| CACCGTAAAACGAATCAGAA+TGG | + | chr1.2:72174149-72174168 | None:intergenic | 40.0% | |
| CAGTGCTATAACATCGCTAT+AGG | - | chr1.2:72174065-72174084 | MS.gene60800:intron | 40.0% | |
| CCTATGACAACCAGTGAATT+AGG | + | chr1.2:72173316-72173335 | None:intergenic | 40.0% | |
| CCTTGTTCATTCTCCTTACT+GGG | - | chr1.2:72175109-72175128 | MS.gene60800:intron | 40.0% | |
| CGTAATAGGACCTAATTCAC+TGG | - | chr1.2:72173303-72173322 | MS.gene60800:intron | 40.0% | |
| CTCACTAAGTGAAAACTGGA+GGG | - | chr1.2:72173764-72173783 | MS.gene60800:intron | 40.0% | |
| CTTGTTCATTCTCCTTACTG+GGG | - | chr1.2:72175110-72175129 | MS.gene60800:intron | 40.0% | |
| GAAGGAAGTTCCCAAATTTG+AGG | - | chr1.2:72175145-72175164 | MS.gene60800:intron | 40.0% | |
| GATATTTGGCGATGGAATAC+TGG | + | chr1.2:72174889-72174908 | None:intergenic | 40.0% | |
| GATTGGGATGGTAGAATACA+AGG | + | chr1.2:72173434-72173453 | None:intergenic | 40.0% | |
| GGACTGTAGGAGGATAATAA+TGG | - | chr1.2:72174806-72174825 | MS.gene60800:intron | 40.0% | |
| GTATTCTACCATCCCAATCT+TGG | - | chr1.2:72173435-72173454 | MS.gene60800:intron | 40.0% | |
| GTCTCTTAAACAGTTTCAGC+TGG | - | chr1.2:72173362-72173381 | MS.gene60800:intron | 40.0% | |
| GTGACTATCATATGGAGAGT+GGG | - | chr1.2:72174166-72174185 | MS.gene60800:intron | 40.0% | |
| GTTTCAATGCAAAGTCTCCA+TGG | + | chr1.2:72174261-72174280 | None:intergenic | 40.0% | |
| TCGTAGAACGCAATATCCAA+TGG | + | chr1.2:72174965-72174984 | None:intergenic | 40.0% | |
| TGATGAAGATCGGAGTATGT+GGG | - | chr1.2:72175010-72175029 | MS.gene60800:intron | 40.0% | |
| TTGCTAATGCAGGTATGGTT+AGG | - | chr1.2:72172586-72172605 | MS.gene60800:CDS | 40.0% | |
| TTGCTCACAATCCAATAAGC+TGG | - | chr1.2:72173891-72173910 | MS.gene60800:intron | 40.0% | |
| TTGGCTCACTAAGTGAAAAC+TGG | - | chr1.2:72173760-72173779 | MS.gene60800:intron | 40.0% | |
| TTGTCCTCAAGGTTGAAGTT+AGG | - | chr1.2:72173157-72173176 | MS.gene60800:intron | 40.0% | |
| ! | AAGGGCTTCTCTTTTTCTGT+CGG | - | chr1.2:72173669-72173688 | MS.gene60800:intron | 40.0% |
| ! | CAGGGATGCTTTATTGAATC+AGG | + | chr1.2:72173572-72173591 | None:intergenic | 40.0% |
| ! | CCCAAATTTGAGGCAGTATA+TGG | - | chr1.2:72175155-72175174 | MS.gene60800:intron | 40.0% |
| ! | CCTAATTCACTGGTTGTCAT+AGG | - | chr1.2:72173313-72173332 | MS.gene60800:intron | 40.0% |
| ! | CTTTTGGATTTCGAAGGAGA+AGG | + | chr1.2:72175343-72175362 | None:intergenic | 40.0% |
| ! | GCATTCTAGAAGAATCGATG+GGG | + | chr1.2:72173055-72173074 | None:intergenic | 40.0% |
| ! | TTGTCTGAGACTCTCTTAGA+GGG | - | chr1.2:72172460-72172479 | MS.gene60800:CDS | 40.0% |
| ! | TTTGTCTGAGACTCTCTTAG+AGG | - | chr1.2:72172459-72172478 | MS.gene60800:CDS | 40.0% |
| !! | CACTTTGCTTTTGCAAGACT+TGG | + | chr1.2:72174921-72174940 | None:intergenic | 40.0% |
| !! | GGACAAGGTCGATTTTAAAG+AGG | + | chr1.2:72173135-72173154 | None:intergenic | 40.0% |
| !! | TGGTGGATTTGTATGTGTGT+AGG | - | chr1.2:72172706-72172725 | MS.gene60800:CDS | 40.0% |
| !!! | AGAAGTTGCCATTTTGGCTA+TGG | - | chr1.2:72173843-72173862 | MS.gene60800:intron | 40.0% |
| !!! | GAATCCAGTTTTAGTTCTGG+AGG | - | chr1.2:72174471-72174490 | MS.gene60800:intron | 40.0% |
| AAGACAGGATGTACAACTGC+AGG | + | chr1.2:72173506-72173525 | None:intergenic | 45.0% | |
| ACTTCAACCTTGAGGACAAC+TGG | + | chr1.2:72173156-72173175 | None:intergenic | 45.0% | |
| AGCACAGTTCTTGTGTTGCA+AGG | - | chr1.2:72172647-72172666 | MS.gene60800:CDS | 45.0% | |
| AGTGCAACTAGTAATGCTGC+AGG | - | chr1.2:72173699-72173718 | MS.gene60800:intron | 45.0% | |
| ATACTGGCATAGTCCTCACA+GGG | - | chr1.2:72173193-72173212 | MS.gene60800:intron | 45.0% | |
| CAAAGGCCAGAGTTGGAAAT+TGG | - | chr1.2:72174749-72174768 | MS.gene60800:intron | 45.0% | |
| CAAGAACTGTGCTGCAGAAT+CGG | + | chr1.2:72172640-72172659 | None:intergenic | 45.0% | |
| CCAACCTCCAGAACTAAAAC+TGG | + | chr1.2:72174478-72174497 | None:intergenic | 45.0% | |
| CCCAGTAAGGAGAATGAACA+AGG | + | chr1.2:72175112-72175131 | None:intergenic | 45.0% | |
| CTGTCCTTGAATGATCTCAC+GGG | - | chr1.2:72173258-72173277 | MS.gene60800:intron | 45.0% | |
| CTTGTTCAGTGGGAACACTT+GGG | + | chr1.2:72173232-72173251 | None:intergenic | 45.0% | |
| GAAGCTTCCAGCTATGACAA+AGG | + | chr1.2:72173099-72173118 | None:intergenic | 45.0% | |
| GACAGTAAGCTCTTGTTCAG+TGG | + | chr1.2:72173243-72173262 | None:intergenic | 45.0% | |
| GCTCACTAAGTGAAAACTGG+AGG | - | chr1.2:72173763-72173782 | MS.gene60800:intron | 45.0% | |
| GGTGACTATCATATGGAGAG+TGG | - | chr1.2:72174165-72174184 | MS.gene60800:intron | 45.0% | |
| GGTTGGCGTTATAGTGTTCT+TGG | - | chr1.2:72173920-72173939 | MS.gene60800:intron | 45.0% | |
| GTCATCTCACAGGATCTTTC+AGG | - | chr1.2:72172973-72172992 | MS.gene60800:intron | 45.0% | |
| GTGATGAAGATCGGAGTATG+TGG | - | chr1.2:72175009-72175028 | MS.gene60800:intron | 45.0% | |
| TAAAGATCCTGAAGGAGCAG+TGG | - | chr1.2:72175291-72175310 | MS.gene60800:intron | 45.0% | |
| TCTCTCTCCTTTGTCATAGC+TGG | - | chr1.2:72173089-72173108 | MS.gene60800:intron | 45.0% | |
| TCTTGTTCAGTGGGAACACT+TGG | + | chr1.2:72173233-72173252 | None:intergenic | 45.0% | |
| TGTTGAAAATGCCTCGTAGG+AGG | + | chr1.2:72174223-72174242 | None:intergenic | 45.0% | |
| TTCTTTCCTCTGCAAGATGC+TGG | - | chr1.2:72173407-72173426 | MS.gene60800:intron | 45.0% | |
| TTGAGCCTTCATGACCTGTT+GGG | - | chr1.2:72173525-72173544 | MS.gene60800:intron | 45.0% | |
| TTGTTCAGTGGGAACACTTG+GGG | + | chr1.2:72173231-72173250 | None:intergenic | 45.0% | |
| TTTGAGCCTTCATGACCTGT+TGG | - | chr1.2:72173524-72173543 | MS.gene60800:intron | 45.0% | |
| ! | ACTGCTACTGGTTGCGTAAT+AGG | - | chr1.2:72173289-72173308 | MS.gene60800:intron | 45.0% |
| ! | CAATTTCCAACTCTGGCCTT+TGG | + | chr1.2:72174751-72174770 | None:intergenic | 45.0% |
| ! | GCCTTGTTCATTCTCCTTAC+TGG | - | chr1.2:72175108-72175127 | MS.gene60800:intron | 45.0% |
| ! | GCTTGTTGAAAATGCCTCGT+AGG | + | chr1.2:72174226-72174245 | None:intergenic | 45.0% |
| ! | TCACTGGTTGTCATAGGAAG+AGG | - | chr1.2:72173319-72173338 | MS.gene60800:intron | 45.0% |
| ! | TTCTAGAAGAATCGATGGGG+AGG | + | chr1.2:72173052-72173071 | None:intergenic | 45.0% |
| ! | TTTTTACAGCTCCTCCTACG+AGG | - | chr1.2:72174209-72174228 | MS.gene60800:intron | 45.0% |
| !! | AAGGAGCAGTGGAGTATTGA+AGG | - | chr1.2:72175302-72175321 | MS.gene60800:intron | 45.0% |
| !! | ACAACTGCAGGTTGGTGATA+AGG | + | chr1.2:72173494-72173513 | None:intergenic | 45.0% |
| !! | GAGTGCAGAAGTTGCCATTT+TGG | - | chr1.2:72173837-72173856 | MS.gene60800:intron | 45.0% |
| !!! | CCAGTTTTAGTTCTGGAGGT+TGG | - | chr1.2:72174475-72174494 | MS.gene60800:intron | 45.0% |
| AACTAACCAGAGCGACGAGA+AGG | + | chr1.2:72172304-72172323 | None:intergenic | 50.0% | |
| ACAGATCCAAAGGCCAGAGT+TGG | - | chr1.2:72174742-72174761 | MS.gene60800:intron | 50.0% | |
| ACCTTGAGGACAACTGGACA+AGG | + | chr1.2:72173150-72173169 | None:intergenic | 50.0% | |
| ACCTTGTCCAGTTGTCCTCA+AGG | - | chr1.2:72173146-72173165 | MS.gene60800:intron | 50.0% | |
| AGAATCCAGGAAGTAGGGAG+AGG | + | chr1.2:72173026-72173045 | None:intergenic | 50.0% | |
| AGAATCGGTAGCGAGAAGAG+GGG | + | chr1.2:72172625-72172644 | None:intergenic | 50.0% | |
| AGGAAGTAGGGAGAGGAATG+CGG | + | chr1.2:72173019-72173038 | None:intergenic | 50.0% | |
| AGGCACAATGCACTAGATGC+TGG | - | chr1.2:72175399-72175418 | MS.gene60800:CDS | 50.0% | |
| CAATACTCCACTGCTCCTTC+AGG | + | chr1.2:72175301-72175320 | None:intergenic | 50.0% | |
| CAGAATCGGTAGCGAGAAGA+GGG | + | chr1.2:72172626-72172645 | None:intergenic | 50.0% | |
| CAGACCCGTGAGATCATTCA+AGG | + | chr1.2:72173265-72173284 | None:intergenic | 50.0% | |
| CAGGATGTACAACTGCAGGT+TGG | + | chr1.2:72173502-72173521 | None:intergenic | 50.0% | |
| CGGGTCTGTAAAACTGCTAC+TGG | - | chr1.2:72173277-72173296 | MS.gene60800:intron | 50.0% | |
| CTAGTAATGCTGCAGGCGAA+TGG | - | chr1.2:72173706-72173725 | MS.gene60800:intron | 50.0% | |
| CTCCCTACTTCCTGGATTCT+CGG | - | chr1.2:72173026-72173045 | MS.gene60800:intron | 50.0% | |
| GATACTGGCATAGTCCTCAC+AGG | - | chr1.2:72173192-72173211 | MS.gene60800:intron | 50.0% | |
| GGAGACTAAAGTTCCCTGTG+AGG | + | chr1.2:72173209-72173228 | None:intergenic | 50.0% | |
| GGCACAATGCACTAGATGCT+GGG | - | chr1.2:72175400-72175419 | MS.gene60800:CDS | 50.0% | |
| GGTCATGAAGGCTCAAAGAC+AGG | + | chr1.2:72173521-72173540 | None:intergenic | 50.0% | |
| TCACGATCTTCTCCCCAGTA+AGG | + | chr1.2:72175125-72175144 | None:intergenic | 50.0% | |
| TGGCGATGGAATACTGGAAG+AGG | + | chr1.2:72174883-72174902 | None:intergenic | 50.0% | |
| TGTTCAGTGGGAACACTTGG+GGG | + | chr1.2:72173230-72173249 | None:intergenic | 50.0% | |
| TTCACTGGTAGGACTGTAGG+AGG | - | chr1.2:72174796-72174815 | MS.gene60800:intron | 50.0% | |
| ! | GGCTTCTCTTTTTCTGTCGG+TGG | - | chr1.2:72173672-72173691 | MS.gene60800:intron | 50.0% |
| AGGCCGAGAATCCAGGAAGT+AGG | + | chr1.2:72173032-72173051 | None:intergenic | 55.0% | |
| ATCGTGCAGGCTGATCTTGC+TGG | - | chr1.2:72174855-72174874 | MS.gene60800:intron | 55.0% | |
| CAAGGTCCAGCATCTTGCAG+AGG | + | chr1.2:72173416-72173435 | None:intergenic | 55.0% | |
| CCTTCATGACCTGTTGGGTG+CGG | - | chr1.2:72173530-72173549 | MS.gene60800:intron | 55.0% | |
| CTGGGGAGAAGATCGTGAGA+AGG | - | chr1.2:72175127-72175146 | MS.gene60800:intron | 55.0% | |
| CTTCATGACCTGTTGGGTGC+GGG | - | chr1.2:72173531-72173550 | MS.gene60800:intron | 55.0% | |
| GCAGAATCGGTAGCGAGAAG+AGG | + | chr1.2:72172627-72172646 | None:intergenic | 55.0% | |
| GCATTCCTCTCCCTACTTCC+TGG | - | chr1.2:72173018-72173037 | MS.gene60800:intron | 55.0% | |
| GGCCGAGAATCCAGGAAGTA+GGG | + | chr1.2:72173031-72173050 | None:intergenic | 55.0% | |
| TAACTTGACCCGCACCCAAC+AGG | + | chr1.2:72173542-72173561 | None:intergenic | 55.0% | |
| TAGGGAGAGGAATGCGGCAA+CGG | + | chr1.2:72173013-72173032 | None:intergenic | 55.0% | |
| CCAGAGCGACGAGAAGGTGA+AGG | + | chr1.2:72172298-72172317 | None:intergenic | 60.0% | |
| CCGCACCCAACAGGTCATGA+AGG | + | chr1.2:72173533-72173552 | None:intergenic | 60.0% | |
| CCTTCACCTTCTCGTCGCTC+TGG | - | chr1.2:72172295-72172314 | MS.gene60800:CDS | 60.0% | |
| GATGGGGAGGCCGAGAATCC+AGG | + | chr1.2:72173039-72173058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 72172271 | 72175433 | 72172271 | ID=MS.gene60800 |
| chr1.2 | mRNA | 72172271 | 72175433 | 72172271 | ID=MS.gene60800.t1;Parent=MS.gene60800 |
| chr1.2 | exon | 72175388 | 72175433 | 72175388 | ID=MS.gene60800.t1.exon1;Parent=MS.gene60800.t1 |
| chr1.2 | CDS | 72175388 | 72175433 | 72175388 | ID=cds.MS.gene60800.t1;Parent=MS.gene60800.t1 |
| chr1.2 | exon | 72175036 | 72175106 | 72175036 | ID=MS.gene60800.t1.exon2;Parent=MS.gene60800.t1 |
| chr1.2 | CDS | 72175036 | 72175106 | 72175036 | ID=cds.MS.gene60800.t1;Parent=MS.gene60800.t1 |
| chr1.2 | exon | 72172271 | 72172840 | 72172271 | ID=MS.gene60800.t1.exon3;Parent=MS.gene60800.t1 |
| chr1.2 | CDS | 72172271 | 72172840 | 72172271 | ID=cds.MS.gene60800.t1;Parent=MS.gene60800.t1 |
| Gene Sequence |
| Protein sequence |
