Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65896.t1 | XP_024639583.1 | 95 | 179 | 9 | 0 | 1 | 179 | 273 | 451 | 3.60E-90 | 340.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65896.t1 | Q9SGZ5 | 51.4 | 181 | 81 | 3 | 1 | 179 | 592 | 767 | 1.3e-43 | 177.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65896.t1 | G7KA75 | 95.0 | 179 | 9 | 0 | 1 | 179 | 607 | 785 | 2.6e-90 | 340.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049424 | MS.gene65896 | 0.816145 | 6.43E-52 | -1.69E-46 |
MS.gene050605 | MS.gene65896 | 0.813425 | 2.58E-51 | -1.69E-46 |
MS.gene050953 | MS.gene65896 | 0.803022 | 4.25E-49 | -1.69E-46 |
MS.gene050987 | MS.gene65896 | 0.813055 | 3.11E-51 | -1.69E-46 |
MS.gene051368 | MS.gene65896 | 0.829131 | 6.11E-55 | -1.69E-46 |
MS.gene051370 | MS.gene65896 | 0.807551 | 4.78E-50 | -1.69E-46 |
MS.gene051574 | MS.gene65896 | 0.801283 | 9.69E-49 | -1.69E-46 |
MS.gene051597 | MS.gene65896 | 0.833118 | 6.41E-56 | -1.69E-46 |
MS.gene052426 | MS.gene65896 | 0.807299 | 5.41E-50 | -1.69E-46 |
MS.gene052500 | MS.gene65896 | 0.870698 | 1.20E-66 | -1.69E-46 |
MS.gene052502 | MS.gene65896 | 0.869696 | 2.55E-66 | -1.69E-46 |
MS.gene052824 | MS.gene65896 | 0.853315 | 2.59E-61 | -1.69E-46 |
MS.gene052826 | MS.gene65896 | 0.871709 | 5.56E-67 | -1.69E-46 |
MS.gene052954 | MS.gene65896 | 0.874126 | 8.61E-68 | -1.69E-46 |
MS.gene053006 | MS.gene65896 | 0.816643 | 4.98E-52 | -1.69E-46 |
MS.gene053080 | MS.gene65896 | 0.813521 | 2.45E-51 | -1.69E-46 |
MS.gene053188 | MS.gene65896 | 0.80498 | 1.66E-49 | -1.69E-46 |
MS.gene053931 | MS.gene65896 | 0.840236 | 9.82E-58 | -1.69E-46 |
MS.gene053963 | MS.gene65896 | 0.800177 | 1.63E-48 | -1.69E-46 |
MS.gene054657 | MS.gene65896 | 0.850427 | 1.71E-60 | -1.69E-46 |
MS.gene05510 | MS.gene65896 | 0.808805 | 2.59E-50 | -1.69E-46 |
MS.gene05548 | MS.gene65896 | 0.803743 | 3.01E-49 | -1.69E-46 |
MS.gene055701 | MS.gene65896 | 0.812231 | 4.71E-51 | -1.69E-46 |
MS.gene055841 | MS.gene65896 | 0.83321 | 6.08E-56 | -1.69E-46 |
MS.gene056506 | MS.gene65896 | 0.814246 | 1.70E-51 | -1.69E-46 |
MS.gene057079 | MS.gene65896 | 0.801067 | 1.07E-48 | -1.69E-46 |
MS.gene057208 | MS.gene65896 | 0.85 | 2.25E-60 | -1.69E-46 |
MS.gene057392 | MS.gene65896 | 0.843775 | 1.14E-58 | -1.69E-46 |
MS.gene057555 | MS.gene65896 | 0.820066 | 8.35E-53 | -1.69E-46 |
MS.gene05795 | MS.gene65896 | 0.803517 | 3.36E-49 | -1.69E-46 |
MS.gene058548 | MS.gene65896 | 0.833549 | 5.00E-56 | -1.69E-46 |
MS.gene058595 | MS.gene65896 | 0.828194 | 1.03E-54 | -1.69E-46 |
MS.gene058979 | MS.gene65896 | 0.806548 | 7.80E-50 | -1.69E-46 |
MS.gene059317 | MS.gene65896 | 0.823442 | 1.38E-53 | -1.69E-46 |
MS.gene059710 | MS.gene65896 | 0.810715 | 1.00E-50 | -1.69E-46 |
MS.gene05979 | MS.gene65896 | 0.81691 | 4.34E-52 | -1.69E-46 |
MS.gene059830 | MS.gene65896 | 0.811314 | 7.45E-51 | -1.69E-46 |
MS.gene060244 | MS.gene65896 | 0.818056 | 2.39E-52 | -1.69E-46 |
MS.gene060310 | MS.gene65896 | 0.820026 | 8.52E-53 | -1.69E-46 |
MS.gene060365 | MS.gene65896 | 0.801885 | 7.29E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65896.t1 | MTR_5g062650 | 94.972 | 179 | 9 | 0 | 1 | 179 | 607 | 785 | 5.60e-109 | 328 |
MS.gene65896.t1 | MTR_5g062430 | 94.972 | 179 | 9 | 0 | 1 | 179 | 604 | 782 | 4.49e-108 | 326 |
MS.gene65896.t1 | MTR_5g062370 | 93.855 | 179 | 11 | 0 | 1 | 179 | 604 | 782 | 6.19e-107 | 323 |
MS.gene65896.t1 | MTR_5g062320 | 92.737 | 179 | 13 | 0 | 1 | 179 | 602 | 780 | 2.15e-105 | 319 |
MS.gene65896.t1 | MTR_3g074060 | 63.687 | 179 | 65 | 0 | 1 | 179 | 598 | 776 | 8.48e-81 | 254 |
MS.gene65896.t1 | MTR_5g030860 | 38.172 | 186 | 106 | 2 | 1 | 179 | 599 | 782 | 1.33e-35 | 131 |
MS.gene65896.t1 | MTR_2g034720 | 36.364 | 176 | 101 | 3 | 1 | 175 | 587 | 752 | 1.44e-30 | 117 |
MS.gene65896.t1 | MTR_1g106860 | 35.385 | 195 | 101 | 4 | 1 | 180 | 591 | 775 | 5.13e-30 | 115 |
MS.gene65896.t1 | MTR_2g008240 | 33.889 | 180 | 110 | 3 | 1 | 179 | 604 | 775 | 8.88e-30 | 115 |
MS.gene65896.t1 | MTR_4g094285 | 34.054 | 185 | 103 | 4 | 1 | 179 | 603 | 774 | 2.67e-27 | 107 |
MS.gene65896.t1 | MTR_1g087240 | 34.054 | 185 | 101 | 4 | 1 | 177 | 584 | 755 | 4.53e-27 | 107 |
MS.gene65896.t1 | MTR_7g109390 | 35.135 | 185 | 100 | 6 | 1 | 177 | 589 | 761 | 1.51e-24 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65896.t1 | AT1G78060 | 51.934 | 181 | 80 | 4 | 1 | 179 | 592 | 767 | 2.36e-56 | 189 |
MS.gene65896.t1 | AT5G10560 | 37.569 | 181 | 109 | 1 | 1 | 177 | 610 | 790 | 5.93e-36 | 132 |
MS.gene65896.t1 | AT3G19620 | 37.356 | 174 | 96 | 4 | 1 | 169 | 593 | 758 | 3.17e-28 | 110 |
MS.gene65896.t1 | AT5G09700 | 37.912 | 182 | 105 | 3 | 1 | 179 | 350 | 526 | 8.03e-28 | 108 |
MS.gene65896.t1 | AT5G09730 | 36.957 | 184 | 104 | 4 | 1 | 179 | 597 | 773 | 3.17e-27 | 107 |
MS.gene65896.t1 | AT1G02640 | 33.898 | 177 | 108 | 3 | 1 | 177 | 591 | 758 | 6.07e-26 | 103 |
MS.gene65896.t1 | AT5G64570 | 36.757 | 185 | 104 | 3 | 1 | 179 | 449 | 626 | 1.69e-25 | 102 |
MS.gene65896.t1 | AT5G64570 | 36.757 | 185 | 104 | 3 | 1 | 179 | 607 | 784 | 2.38e-25 | 102 |
MS.gene65896.t1 | AT5G49360 | 35.326 | 184 | 100 | 7 | 1 | 175 | 595 | 768 | 2.74e-24 | 99.4 |
Find 53 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCATTTCTACCTTTCTT+TGG | 0.223144 | 5.2:+71657318 | None:intergenic |
TTTGACTGAAATGAAGTTGT+AGG | 0.288846 | 5.2:+71657527 | None:intergenic |
TTTGAGAGTGTGACGGTAGA+AGG | 0.295260 | 5.2:-71657273 | MS.gene65896:CDS |
TACAAACTTGTTTCAGAGAT+AGG | 0.351981 | 5.2:-71657438 | MS.gene65896:CDS |
AGCAAATGAGAGTGGTGTTA+AGG | 0.359751 | 5.2:-71657196 | MS.gene65896:CDS |
GGAGGTGGAAAGGGTGAAGT+TGG | 0.369858 | 5.2:-71657252 | MS.gene65896:CDS |
ACATTGGGAATTACAAATAC+TGG | 0.373679 | 5.2:-71657381 | MS.gene65896:CDS |
GGTCCAAAGGTCTACGAATT+CGG | 0.387773 | 5.2:-71657576 | MS.gene65896:CDS |
ACAAATACTGGAGGCATGGC+TGG | 0.398922 | 5.2:-71657369 | MS.gene65896:CDS |
AGGAATAATTTGAGTAGCTT+AGG | 0.401616 | 5.2:+71657547 | None:intergenic |
TAGCCGAATTCGTAGACCTT+TGG | 0.407677 | 5.2:+71657573 | None:intergenic |
AACCCTACCAACTGTTTCAC+TGG | 0.418928 | 5.2:+71657294 | None:intergenic |
AGGTGGTTATTTGTTGGTTG+TGG | 0.420306 | 5.2:-71657163 | MS.gene65896:CDS |
TCTCTGAAACAAGTTTGTAA+TGG | 0.433264 | 5.2:+71657442 | None:intergenic |
AAGCCAAAGAAAGGTAGAAA+TGG | 0.439382 | 5.2:-71657321 | MS.gene65896:CDS |
AATTCCCAATGTGACAGAAA+TGG | 0.462642 | 5.2:+71657392 | None:intergenic |
ATGTCCATTTCTGTCACATT+GGG | 0.462961 | 5.2:-71657396 | MS.gene65896:CDS |
CTCATTCTCATGTCAGTCAT+TGG | 0.465198 | 5.2:+71657648 | None:intergenic |
TTATTTGTTGGTTGTGGGAG+AGG | 0.471909 | 5.2:-71657157 | MS.gene65896:CDS |
ACGGTAGAAGGAGGTGGAAA+GGG | 0.488877 | 5.2:-71657261 | MS.gene65896:CDS |
GGTGGTTATTTGTTGGTTGT+GGG | 0.491601 | 5.2:-71657162 | MS.gene65896:CDS |
CATGTCCATTTCTGTCACAT+TGG | 0.509436 | 5.2:-71657397 | MS.gene65896:CDS |
ATGAGGGCTGATCCATCATC+AGG | 0.511303 | 5.2:-71657630 | MS.gene65896:CDS |
GTAGAAACGGTAGGTTCTAC+CGG | 0.511605 | 5.2:+71657602 | None:intergenic |
TACTCAATAAATATCACTGT+TGG | 0.517582 | 5.2:-71657129 | MS.gene65896:CDS |
CTACCGGGATAGCCTGATGA+TGG | 0.517596 | 5.2:+71657618 | None:intergenic |
GACGGTAGAAGGAGGTGGAA+AGG | 0.524657 | 5.2:-71657262 | MS.gene65896:CDS |
TGAAGAAGGTGGTTATTTGT+TGG | 0.528173 | 5.2:-71657169 | MS.gene65896:CDS |
AAGGTCTACGAATTCGGCTA+TGG | 0.539382 | 5.2:-71657570 | MS.gene65896:CDS |
CCTTTGGACCTGTGTAGAAA+CGG | 0.540578 | 5.2:+71657589 | None:intergenic |
GATCCATCATCAGGCTATCC+CGG | 0.540808 | 5.2:-71657621 | MS.gene65896:CDS |
ATCCAGTGAAACAGTTGGTA+GGG | 0.542668 | 5.2:-71657296 | MS.gene65896:CDS |
TTGTTTGTGAAGCCAAAGAA+AGG | 0.545721 | 5.2:-71657330 | MS.gene65896:CDS |
AGTGTGACGGTAGAAGGAGG+TGG | 0.547541 | 5.2:-71657267 | MS.gene65896:CDS |
AATCCAGTGAAACAGTTGGT+AGG | 0.561271 | 5.2:-71657297 | MS.gene65896:CDS |
GAGAGTGTGACGGTAGAAGG+AGG | 0.561859 | 5.2:-71657270 | MS.gene65896:CDS |
CAAATACTGGAGGCATGGCT+GGG | 0.567905 | 5.2:-71657368 | MS.gene65896:CDS |
TTGTTGATTGATTGATGTGA+AGG | 0.569073 | 5.2:+71657496 | None:intergenic |
CAATGACTGACATGAGAATG+AGG | 0.574292 | 5.2:-71657647 | MS.gene65896:CDS |
GGTAGGGTTTGAGAGTGTGA+CGG | 0.580407 | 5.2:-71657280 | MS.gene65896:CDS |
AATTACAAATACTGGAGGCA+TGG | 0.594236 | 5.2:-71657373 | MS.gene65896:CDS |
CAATGTGACAGAAATGGACA+TGG | 0.599069 | 5.2:+71657398 | None:intergenic |
GGTGTTAAGGTGATTGAAGA+AGG | 0.603997 | 5.2:-71657183 | MS.gene65896:CDS |
CCGTTTCTACACAGGTCCAA+AGG | 0.609130 | 5.2:-71657589 | MS.gene65896:CDS |
GGCTTCACAAACAACAACAC+AGG | 0.609698 | 5.2:+71657339 | None:intergenic |
AGAACCTACCGTTTCTACAC+AGG | 0.612051 | 5.2:-71657597 | MS.gene65896:CDS |
GTTAAGGTGATTGAAGAAGG+TGG | 0.615321 | 5.2:-71657180 | MS.gene65896:CDS |
TGGAAATCCAGTGAAACAGT+TGG | 0.620701 | 5.2:-71657301 | MS.gene65896:CDS |
TGGACCTGTGTAGAAACGGT+AGG | 0.625209 | 5.2:+71657593 | None:intergenic |
TAGAAACGGTAGGTTCTACC+GGG | 0.648311 | 5.2:+71657603 | None:intergenic |
CTTAGTAGAGCAAATGAGAG+TGG | 0.648348 | 5.2:-71657204 | MS.gene65896:CDS |
AATGACTGACATGAGAATGA+GGG | 0.678215 | 5.2:-71657646 | MS.gene65896:CDS |
TTGGGAATTACAAATACTGG+AGG | 0.696508 | 5.2:-71657378 | MS.gene65896:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TACTCAATAAATATCACTGT+TGG | - | chr5.2:71657641-71657660 | MS.gene65896:CDS | 25.0% |
ACATTGGGAATTACAAATAC+TGG | - | chr5.2:71657389-71657408 | MS.gene65896:CDS | 30.0% | |
AGGAATAATTTGAGTAGCTT+AGG | + | chr5.2:71657226-71657245 | None:intergenic | 30.0% | |
TTTCCATTTCTACCTTTCTT+TGG | + | chr5.2:71657455-71657474 | None:intergenic | 30.0% | |
TTTGACTGAAATGAAGTTGT+AGG | + | chr5.2:71657246-71657265 | None:intergenic | 30.0% | |
! | TACAAACTTGTTTCAGAGAT+AGG | - | chr5.2:71657332-71657351 | MS.gene65896:CDS | 30.0% |
! | TTGTTGATTGATTGATGTGA+AGG | + | chr5.2:71657277-71657296 | None:intergenic | 30.0% |
!! | TCTCTGAAACAAGTTTGTAA+TGG | + | chr5.2:71657331-71657350 | None:intergenic | 30.0% |
AAGCCAAAGAAAGGTAGAAA+TGG | - | chr5.2:71657449-71657468 | MS.gene65896:CDS | 35.0% | |
AATTACAAATACTGGAGGCA+TGG | - | chr5.2:71657397-71657416 | MS.gene65896:CDS | 35.0% | |
AATTCCCAATGTGACAGAAA+TGG | + | chr5.2:71657381-71657400 | None:intergenic | 35.0% | |
ATGTCCATTTCTGTCACATT+GGG | - | chr5.2:71657374-71657393 | MS.gene65896:CDS | 35.0% | |
TGAAGAAGGTGGTTATTTGT+TGG | - | chr5.2:71657601-71657620 | MS.gene65896:CDS | 35.0% | |
TTGGGAATTACAAATACTGG+AGG | - | chr5.2:71657392-71657411 | MS.gene65896:CDS | 35.0% | |
TTGTTTGTGAAGCCAAAGAA+AGG | - | chr5.2:71657440-71657459 | MS.gene65896:CDS | 35.0% | |
AATCCAGTGAAACAGTTGGT+AGG | - | chr5.2:71657473-71657492 | MS.gene65896:CDS | 40.0% | |
CAATGTGACAGAAATGGACA+TGG | + | chr5.2:71657375-71657394 | None:intergenic | 40.0% | |
CATGTCCATTTCTGTCACAT+TGG | - | chr5.2:71657373-71657392 | MS.gene65896:CDS | 40.0% | |
CTTAGTAGAGCAAATGAGAG+TGG | - | chr5.2:71657566-71657585 | MS.gene65896:CDS | 40.0% | |
GGTGTTAAGGTGATTGAAGA+AGG | - | chr5.2:71657587-71657606 | MS.gene65896:CDS | 40.0% | |
GTTAAGGTGATTGAAGAAGG+TGG | - | chr5.2:71657590-71657609 | MS.gene65896:CDS | 40.0% | |
TGGAAATCCAGTGAAACAGT+TGG | - | chr5.2:71657469-71657488 | MS.gene65896:CDS | 40.0% | |
! | AGCAAATGAGAGTGGTGTTA+AGG | - | chr5.2:71657574-71657593 | MS.gene65896:CDS | 40.0% |
! | AGGTGGTTATTTGTTGGTTG+TGG | - | chr5.2:71657607-71657626 | MS.gene65896:CDS | 40.0% |
! | ATCCAGTGAAACAGTTGGTA+GGG | - | chr5.2:71657474-71657493 | MS.gene65896:CDS | 40.0% |
! | GGTGGTTATTTGTTGGTTGT+GGG | - | chr5.2:71657608-71657627 | MS.gene65896:CDS | 40.0% |
! | TTATTTGTTGGTTGTGGGAG+AGG | - | chr5.2:71657613-71657632 | MS.gene65896:CDS | 40.0% |
AACCCTACCAACTGTTTCAC+TGG | + | chr5.2:71657479-71657498 | None:intergenic | 45.0% | |
AAGGTCTACGAATTCGGCTA+TGG | - | chr5.2:71657200-71657219 | MS.gene65896:CDS | 45.0% | |
AGAACCTACCGTTTCTACAC+AGG | - | chr5.2:71657173-71657192 | MS.gene65896:CDS | 45.0% | |
CCTTTGGACCTGTGTAGAAA+CGG | + | chr5.2:71657184-71657203 | None:intergenic | 45.0% | |
GGCTTCACAAACAACAACAC+AGG | + | chr5.2:71657434-71657453 | None:intergenic | 45.0% | |
GGTCCAAAGGTCTACGAATT+CGG | - | chr5.2:71657194-71657213 | MS.gene65896:CDS | 45.0% | |
GTAGAAACGGTAGGTTCTAC+CGG | + | chr5.2:71657171-71657190 | None:intergenic | 45.0% | |
TAGAAACGGTAGGTTCTACC+GGG | + | chr5.2:71657170-71657189 | None:intergenic | 45.0% | |
TAGCCGAATTCGTAGACCTT+TGG | + | chr5.2:71657200-71657219 | None:intergenic | 45.0% | |
! | TTTGAGAGTGTGACGGTAGA+AGG | - | chr5.2:71657497-71657516 | MS.gene65896:CDS | 45.0% |
ACGGTAGAAGGAGGTGGAAA+GGG | - | chr5.2:71657509-71657528 | MS.gene65896:CDS | 50.0% | |
ATGAGGGCTGATCCATCATC+AGG | - | chr5.2:71657140-71657159 | MS.gene65896:CDS | 50.0% | |
CCGTTTCTACACAGGTCCAA+AGG | - | chr5.2:71657181-71657200 | MS.gene65896:CDS | 50.0% | |
GATCCATCATCAGGCTATCC+CGG | - | chr5.2:71657149-71657168 | MS.gene65896:CDS | 50.0% | |
TGGACCTGTGTAGAAACGGT+AGG | + | chr5.2:71657180-71657199 | None:intergenic | 50.0% | |
! | ACAAATACTGGAGGCATGGC+TGG | - | chr5.2:71657401-71657420 | MS.gene65896:CDS | 50.0% |
! | CAAATACTGGAGGCATGGCT+GGG | - | chr5.2:71657402-71657421 | MS.gene65896:CDS | 50.0% |
! | GGTAGGGTTTGAGAGTGTGA+CGG | - | chr5.2:71657490-71657509 | MS.gene65896:CDS | 50.0% |
AGTGTGACGGTAGAAGGAGG+TGG | - | chr5.2:71657503-71657522 | MS.gene65896:CDS | 55.0% | |
CTACCGGGATAGCCTGATGA+TGG | + | chr5.2:71657155-71657174 | None:intergenic | 55.0% | |
GACGGTAGAAGGAGGTGGAA+AGG | - | chr5.2:71657508-71657527 | MS.gene65896:CDS | 55.0% | |
GGAGGTGGAAAGGGTGAAGT+TGG | - | chr5.2:71657518-71657537 | MS.gene65896:CDS | 55.0% | |
! | GAGAGTGTGACGGTAGAAGG+AGG | - | chr5.2:71657500-71657519 | MS.gene65896:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 71657125 | 71657667 | 71657125 | ID=MS.gene65896 |
chr5.2 | mRNA | 71657125 | 71657667 | 71657125 | ID=MS.gene65896.t1;Parent=MS.gene65896 |
chr5.2 | exon | 71657125 | 71657667 | 71657125 | ID=MS.gene65896.t1.exon1;Parent=MS.gene65896.t1 |
chr5.2 | CDS | 71657125 | 71657667 | 71657125 | ID=cds.MS.gene65896.t1;Parent=MS.gene65896.t1 |
Gene Sequence |
Protein sequence |