Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66293.t1 | AFK36052.1 | 97.4 | 152 | 3 | 1 | 57 | 208 | 64 | 214 | 1.20E-76 | 296.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66293.t1 | I3SA30 | 97.4 | 152 | 3 | 1 | 57 | 208 | 64 | 214 | 8.6e-77 | 296.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene66293 | 0.825839 | 3.77E-54 | -1.69E-46 |
| MS.gene049190 | MS.gene66293 | 0.828712 | 7.72E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene66293 | 0.824934 | 6.17E-54 | -1.69E-46 |
| MS.gene049501 | MS.gene66293 | 0.804356 | 2.25E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene66293 | 0.810204 | 1.29E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene66293 | 0.83877 | 2.36E-57 | -1.69E-46 |
| MS.gene050020 | MS.gene66293 | 0.810378 | 1.19E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene66293 | 0.800104 | 1.69E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene66293 | 0.829564 | 4.80E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene66293 | 0.801913 | 7.19E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene66293 | 0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene66293 | 0.816296 | 5.95E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene66293 | 0.833739 | 4.49E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene66293 | 0.831891 | 1.29E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene66293 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene052020 | MS.gene66293 | 0.819137 | 1.36E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene66293 | 0.824996 | 5.96E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene66293 | 0.80951 | 1.83E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene66293 | 0.851008 | 1.17E-60 | -1.69E-46 |
| MS.gene052612 | MS.gene66293 | 0.831763 | 1.39E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene66293 | 0.812386 | 4.35E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene66293 | 0.819443 | 1.16E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene66293 | 0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene66293 | 0.801641 | 8.18E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene66293 | 0.811368 | 7.25E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene66293 | 0.836184 | 1.09E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene66293 | 0.830669 | 2.58E-55 | -1.69E-46 |
| MS.gene053565 | MS.gene66293 | 0.801368 | 9.31E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene66293 | 0.814252 | 1.69E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene66293 | 0.834627 | 2.69E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene66293 | 0.819396 | 1.19E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene66293 | 0.802938 | 4.42E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene66293 | 0.816419 | 5.59E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene66293 | 0.805077 | 1.59E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene66293 | 0.852361 | 4.86E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene66293 | -0.826499 | 2.62E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene66293 | 0.807829 | 4.17E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene66293 | 0.852993 | 3.21E-61 | -1.69E-46 |
| MS.gene055891 | MS.gene66293 | 0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene056043 | MS.gene66293 | -0.806974 | 6.34E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene66293 | 0.816438 | 5.53E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene66293 | 0.830854 | 2.32E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene66293 | 0.814757 | 1.31E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene66293 | 0.801685 | 8.01E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene66293 | 0.821703 | 3.51E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene66293 | 0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene66293 | 0.819791 | 9.65E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene66293 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene66293 | 0.819556 | 1.09E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene66293 | 0.80921 | 2.12E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene66293 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene66293 | 0.826984 | 2.01E-54 | -1.69E-46 |
| MS.gene060194 | MS.gene66293 | 0.812377 | 4.37E-51 | -1.69E-46 |
| MS.gene060355 | MS.gene66293 | 0.810684 | 1.02E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene66293 | 0.811753 | 5.98E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene66293 | 0.844951 | 5.50E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66293.t1 | MTR_6g093220 | 90.698 | 215 | 12 | 4 | 1 | 208 | 1 | 214 | 6.53e-122 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66293.t1 | AT5G58110 | 57.653 | 196 | 80 | 2 | 14 | 208 | 3 | 196 | 1.96e-74 | 223 |
Find 41 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGTCGTCGTATACTTAT+TGG | 0.221609 | 6.1:+79761049 | MS.gene66293:CDS |
| TGTTACTTCTTCTCATCAAT+TGG | 0.222046 | 6.1:+79761140 | MS.gene66293:CDS |
| TTGGGCTATTCCTAGAATTA+AGG | 0.262161 | 6.1:+79761212 | MS.gene66293:CDS |
| ATGACGTCACTCCTCCATTA+AGG | 0.273220 | 6.1:-79760996 | None:intergenic |
| AGTAAGTAAACCTTAATTCT+AGG | 0.282854 | 6.1:-79761222 | None:intergenic |
| GAATCAATGGAGTCCCTTAA+TGG | 0.345099 | 6.1:+79760982 | None:intergenic |
| GTTACTTCTTCTCATCAATT+GGG | 0.369463 | 6.1:+79761141 | MS.gene66293:CDS |
| TGGTGAACTGGATGATTTGC+AGG | 0.372496 | 6.1:+79761880 | MS.gene66293:CDS |
| CTCATCAATTGGGTTCTGCT+TGG | 0.379523 | 6.1:+79761151 | MS.gene66293:CDS |
| GGAGATCTCATTTGGTGAAC+TGG | 0.386323 | 6.1:+79761868 | MS.gene66293:CDS |
| ACTAACATCTCCAACACATT+TGG | 0.402013 | 6.1:-79761397 | None:intergenic |
| CTTGGAATCGTGCTGGCACT+TGG | 0.404894 | 6.1:+79761169 | MS.gene66293:CDS |
| TGGAGGGCATATCGATGTTC+CGG | 0.410186 | 6.1:+79761847 | MS.gene66293:CDS |
| AGCGTCGTCGTATACTTATT+GGG | 0.412195 | 6.1:+79761050 | MS.gene66293:CDS |
| GATGTTCCGGAGATCTCATT+TGG | 0.428887 | 6.1:+79761860 | MS.gene66293:CDS |
| CAGGAATTGCTCATTTCTGT+GGG | 0.441867 | 6.1:+79761324 | MS.gene66293:intron |
| TCTGCCAGAGGAGAATGATA+TGG | 0.453679 | 6.1:-79761349 | None:intergenic |
| TCAGGAATTGCTCATTTCTG+TGG | 0.456847 | 6.1:+79761323 | MS.gene66293:intron |
| TGACGTCACTCCTCCATTAA+GGG | 0.458538 | 6.1:-79760995 | None:intergenic |
| CAAGGAAATAAGAAGTTGCT+TGG | 0.467113 | 6.1:+79761827 | MS.gene66293:CDS |
| AAGAGAAATCTCTTAACCAT+TGG | 0.487347 | 6.1:+79761193 | MS.gene66293:CDS |
| AGAGAAATCTCTTAACCATT+GGG | 0.488159 | 6.1:+79761194 | MS.gene66293:CDS |
| AAGAACTCAAAGATAGATAG+TGG | 0.501118 | 6.1:+79763629 | MS.gene66293:CDS |
| GGTTCCATATCATTCTCCTC+TGG | 0.510440 | 6.1:+79761345 | MS.gene66293:CDS |
| GGAAATAAGAAGTTGCTTGG+AGG | 0.512423 | 6.1:+79761830 | MS.gene66293:CDS |
| TACAATTGGATACAGGGGAA+TGG | 0.527980 | 6.1:+79761798 | MS.gene66293:intron |
| TTATTTATTATAGGCACTTG+TGG | 0.531337 | 6.1:+79761615 | MS.gene66293:intron |
| GGTTCTGCTTGGAATCGTGC+TGG | 0.531758 | 6.1:+79761162 | MS.gene66293:CDS |
| GAAATAAGAAGTTGCTTGGA+GGG | 0.541741 | 6.1:+79761831 | MS.gene66293:CDS |
| ATATCATTCTCCTCTGGCAG+AGG | 0.546286 | 6.1:+79761351 | MS.gene66293:CDS |
| GAGCTGTCCTTAAAAGTGAA+AGG | 0.567172 | 6.1:+79761676 | MS.gene66293:CDS |
| AGTTCACCAAATGAGATCTC+CGG | 0.570544 | 6.1:-79761866 | None:intergenic |
| CAAGATGTAACCAAATGTGT+TGG | 0.572691 | 6.1:+79761387 | MS.gene66293:CDS |
| GTCATCGTCGTCGAAATCGA+AGG | 0.588472 | 6.1:+79761014 | MS.gene66293:CDS |
| AGTGAGACTTAATGAAGCAT+CGG | 0.591789 | 6.1:+79763519 | MS.gene66293:CDS |
| TTGTGCTGTGCCTCTGCCAG+AGG | 0.600109 | 6.1:-79761361 | None:intergenic |
| TTGGAATCGTGCTGGCACTT+GGG | 0.601928 | 6.1:+79761170 | MS.gene66293:CDS |
| TTTATTATAGGCACTTGTGG+TGG | 0.610822 | 6.1:+79761618 | MS.gene66293:intron |
| ACAGGGGAATGGATTATACA+AGG | 0.613504 | 6.1:+79761809 | MS.gene66293:intron |
| TAATTCTAGGAATAGCCCAA+TGG | 0.650376 | 6.1:-79761209 | None:intergenic |
| TCAATGGAGTCCCTTAATGG+AGG | 0.676249 | 6.1:+79760985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTATTTATTTATTAT+AGG | + | chr6.1:79761606-79761625 | MS.gene66293:intron | 0.0% |
| !! | TTAATTTCACTATTATAAAT+TGG | - | chr6.1:79762488-79762507 | None:intergenic | 10.0% |
| !!! | TTGATTATTTCAATTTTAAA+TGG | + | chr6.1:79762648-79762667 | MS.gene66293:intron | 10.0% |
| !!! | ATTCAGTATTTAAAATTGAT+AGG | - | chr6.1:79762601-79762620 | None:intergenic | 15.0% |
| !!! | TTCAGTATTTAAAATTGATA+GGG | - | chr6.1:79762600-79762619 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCATTATACAGA+TGG | + | chr6.1:79763495-79763514 | MS.gene66293:intron | 15.0% |
| !! | AACGGTTATATAAATCAATA+CGG | - | chr6.1:79763389-79763408 | None:intergenic | 20.0% |
| !! | AAGAACACAAAAATTTATGT+TGG | + | chr6.1:79762761-79762780 | MS.gene66293:intron | 20.0% |
| !! | AATCGATATAATGATCAAAA+GGG | - | chr6.1:79763191-79763210 | None:intergenic | 20.0% |
| !! | ATTTAAATCAATATCCTTCT+CGG | - | chr6.1:79762254-79762273 | None:intergenic | 20.0% |
| !! | GTGATAAAATCAATAATAAG+AGG | - | chr6.1:79761908-79761927 | None:intergenic | 20.0% |
| !! | TAGAATTTGAATTTGAAGAT+AGG | - | chr6.1:79761447-79761466 | None:intergenic | 20.0% |
| !! | TTCACTATTATAAATTGGTA+GGG | - | chr6.1:79762483-79762502 | None:intergenic | 20.0% |
| !! | TTTCACTATTATAAATTGGT+AGG | - | chr6.1:79762484-79762503 | None:intergenic | 20.0% |
| !!! | ATTTGGTGAGAATTATAATT+GGG | + | chr6.1:79762421-79762440 | MS.gene66293:intron | 20.0% |
| !!! | ATTTTTGTACATAACATGTT+TGG | + | chr6.1:79762905-79762924 | MS.gene66293:intron | 20.0% |
| !!! | TATAAGTGATGTTTTACAAT+TGG | + | chr6.1:79761784-79761803 | MS.gene66293:intron | 20.0% |
| ! | AAGCATTTGTATTGAGAATA+GGG | + | chr6.1:79762378-79762397 | MS.gene66293:intron | 25.0% |
| ! | AATTAGTAGTTATTAGCAAG+TGG | + | chr6.1:79763009-79763028 | MS.gene66293:intron | 25.0% |
| ! | AGTAAGTAAACCTTAATTCT+AGG | - | chr6.1:79761225-79761244 | None:intergenic | 25.0% |
| ! | ATTAGTAGTTATTAGCAAGT+GGG | + | chr6.1:79763010-79763029 | MS.gene66293:intron | 25.0% |
| ! | GAATCGATATAATGATCAAA+AGG | - | chr6.1:79763192-79763211 | None:intergenic | 25.0% |
| ! | GAGAATTATAATTGGGATTA+GGG | + | chr6.1:79762428-79762447 | MS.gene66293:intron | 25.0% |
| ! | TCATTCACACTAGATTATTA+TGG | + | chr6.1:79762293-79762312 | MS.gene66293:intron | 25.0% |
| ! | TGAGAATTATAATTGGGATT+AGG | + | chr6.1:79762427-79762446 | MS.gene66293:intron | 25.0% |
| ! | TTATTTATTATAGGCACTTG+TGG | + | chr6.1:79761615-79761634 | MS.gene66293:intron | 25.0% |
| !! | ACTTGCTAATAACTACTAAT+TGG | - | chr6.1:79763010-79763029 | None:intergenic | 25.0% |
| !! | ATGCCAAATTTTCCAAATAA+AGG | + | chr6.1:79763237-79763256 | MS.gene66293:intron | 25.0% |
| !! | ATGTTTTACAATTGGATACA+GGG | + | chr6.1:79761792-79761811 | MS.gene66293:intron | 25.0% |
| !! | CATTTGGTGAGAATTATAAT+TGG | + | chr6.1:79762420-79762439 | MS.gene66293:intron | 25.0% |
| !!! | ACACTTACAATTCTAGTTTT+GGG | - | chr6.1:79762716-79762735 | None:intergenic | 25.0% |
| !!! | GAGAAGGATATTGATTTAAA+TGG | + | chr6.1:79762253-79762272 | MS.gene66293:intron | 25.0% |
| !!! | TACACTTACAATTCTAGTTT+TGG | - | chr6.1:79762717-79762736 | None:intergenic | 25.0% |
| !!! | TCATTTTGTTACTTTGTTTC+AGG | + | chr6.1:79761305-79761324 | MS.gene66293:intron | 25.0% |
| AAAATTGTCTTCCGTGATTT+GGG | + | chr6.1:79762149-79762168 | MS.gene66293:intron | 30.0% | |
| AAGAGAAATCTCTTAACCAT+TGG | + | chr6.1:79761193-79761212 | MS.gene66293:CDS | 30.0% | |
| AATACTCCTTGTATTATACG+TGG | + | chr6.1:79762569-79762588 | MS.gene66293:intron | 30.0% | |
| AATTATAATTGGGATTAGGG+AGG | + | chr6.1:79762431-79762450 | MS.gene66293:intron | 30.0% | |
| ACGAGTACACAAAAAGAATA+AGG | - | chr6.1:79763305-79763324 | None:intergenic | 30.0% | |
| AGAGAAATCTCTTAACCATT+GGG | + | chr6.1:79761194-79761213 | MS.gene66293:CDS | 30.0% | |
| ATTATAATTGGGATTAGGGA+GGG | + | chr6.1:79762432-79762451 | MS.gene66293:intron | 30.0% | |
| CAAGCATTTGTATTGAGAAT+AGG | + | chr6.1:79762377-79762396 | MS.gene66293:intron | 30.0% | |
| CGAGTACACAAAAAGAATAA+GGG | - | chr6.1:79763304-79763323 | None:intergenic | 30.0% | |
| GAATGAAAGAGTAATTGACT+CGG | - | chr6.1:79761274-79761293 | None:intergenic | 30.0% | |
| GCAAAGTAAAGAAGAACAAT+TGG | - | chr6.1:79761742-79761761 | None:intergenic | 30.0% | |
| GGCATAAACCAAATGAAAAA+AGG | - | chr6.1:79762010-79762029 | None:intergenic | 30.0% | |
| GTAAGAATAAGGCCTTTATT+TGG | - | chr6.1:79763252-79763271 | None:intergenic | 30.0% | |
| GTGTACTCGTTTAATCATTA+GGG | + | chr6.1:79763315-79763334 | MS.gene66293:intron | 30.0% | |
| GTTACTTCTTCTCATCAATT+GGG | + | chr6.1:79761141-79761160 | MS.gene66293:CDS | 30.0% | |
| TAAAATTGTCTTCCGTGATT+TGG | + | chr6.1:79762148-79762167 | MS.gene66293:intron | 30.0% | |
| TCAAAAGTTGTCTTCAAAAC+TGG | - | chr6.1:79762816-79762835 | None:intergenic | 30.0% | |
| TCGTTTAATCATTAGGGTTA+GGG | + | chr6.1:79763321-79763340 | MS.gene66293:intron | 30.0% | |
| TGTGTACTCGTTTAATCATT+AGG | + | chr6.1:79763314-79763333 | MS.gene66293:intron | 30.0% | |
| ! | AGGCCTTTATTTGGAAAATT+TGG | - | chr6.1:79763243-79763262 | None:intergenic | 30.0% |
| ! | GATGTTTTACAATTGGATAC+AGG | + | chr6.1:79761791-79761810 | MS.gene66293:intron | 30.0% |
| ! | TATCAGTGAGATTAGCTATA+AGG | - | chr6.1:79762327-79762346 | None:intergenic | 30.0% |
| ! | TGTTACTTCTTCTCATCAAT+TGG | + | chr6.1:79761140-79761159 | MS.gene66293:CDS | 30.0% |
| ! | TGTTTTACAATTGGATACAG+GGG | + | chr6.1:79761793-79761812 | MS.gene66293:intron | 30.0% |
| ! | TTAGATCTCTTTTTGTGGTT+TGG | + | chr6.1:79762457-79762476 | MS.gene66293:intron | 30.0% |
| !! | AAAAGAATAAGGGTTGATGT+AGG | - | chr6.1:79763294-79763313 | None:intergenic | 30.0% |
| !! | TGCATGATTAGTTCTGTTAA+TGG | + | chr6.1:79763040-79763059 | MS.gene66293:intron | 30.0% |
| !! | TGTCGTAATTTGTTCTGTTA+TGG | - | chr6.1:79762031-79762050 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCCTTTGCACTAT+AGG | + | chr6.1:79763114-79763133 | MS.gene66293:intron | 30.0% |
| !!! | TGGATTTTGGGTTTTTTGTA+TGG | + | chr6.1:79761979-79761998 | MS.gene66293:intron | 30.0% |
| AAAGAATGCCTATAGTGCAA+AGG | - | chr6.1:79763125-79763144 | None:intergenic | 35.0% | |
| AAAGATCGTAATCTATGTGG+TGG | - | chr6.1:79762967-79762986 | None:intergenic | 35.0% | |
| AAATTTGGCATTAATGCTGG+TGG | - | chr6.1:79763228-79763247 | None:intergenic | 35.0% | |
| AAGATCGTAATCTATGTGGT+GGG | - | chr6.1:79762966-79762985 | None:intergenic | 35.0% | |
| AATTACGACACTATGCTAGT+AGG | + | chr6.1:79762041-79762060 | MS.gene66293:intron | 35.0% | |
| ACTAACATCTCCAACACATT+TGG | - | chr6.1:79761400-79761419 | None:intergenic | 35.0% | |
| ACTTCAAAATCACCTACAAC+AGG | - | chr6.1:79763090-79763109 | None:intergenic | 35.0% | |
| AGTGAGACTTAATGAAGCAT+CGG | + | chr6.1:79763519-79763538 | MS.gene66293:CDS | 35.0% | |
| CAAGATGTAACCAAATGTGT+TGG | + | chr6.1:79761387-79761406 | MS.gene66293:CDS | 35.0% | |
| CAAGGAAATAAGAAGTTGCT+TGG | + | chr6.1:79761827-79761846 | MS.gene66293:CDS | 35.0% | |
| CAGAAAGATCGTAATCTATG+TGG | - | chr6.1:79762970-79762989 | None:intergenic | 35.0% | |
| CATCGATCTGTCTTATACAT+TGG | - | chr6.1:79761573-79761592 | None:intergenic | 35.0% | |
| CTAATCTCACTGATAGAAAC+TGG | + | chr6.1:79762332-79762351 | MS.gene66293:intron | 35.0% | |
| CTCGTTTAATCATTAGGGTT+AGG | + | chr6.1:79763320-79763339 | MS.gene66293:intron | 35.0% | |
| GAAATAAGAAGTTGCTTGGA+GGG | + | chr6.1:79761831-79761850 | MS.gene66293:CDS | 35.0% | |
| GAAGAACAATTGGATTGAAG+TGG | - | chr6.1:79761732-79761751 | None:intergenic | 35.0% | |
| GAGTTAATAACACGTGCAAA+CGG | - | chr6.1:79763407-79763426 | None:intergenic | 35.0% | |
| GCAAAACCACGTATAATACA+AGG | - | chr6.1:79762578-79762597 | None:intergenic | 35.0% | |
| GGAAAATTTGGCATTAATGC+TGG | - | chr6.1:79763231-79763250 | None:intergenic | 35.0% | |
| GGGTTCAATAGGTAAGAATA+AGG | - | chr6.1:79763263-79763282 | None:intergenic | 35.0% | |
| GTGGCAACACAATAATAGTA+AGG | - | chr6.1:79761713-79761732 | None:intergenic | 35.0% | |
| TAATGATCAAAAGGGTCAAC+TGG | - | chr6.1:79763183-79763202 | None:intergenic | 35.0% | |
| TGAGAAGGATGGTATTCATT+TGG | + | chr6.1:79762404-79762423 | MS.gene66293:intron | 35.0% | |
| TGTTCTCCCAATATATGCAT+TGG | + | chr6.1:79762072-79762091 | MS.gene66293:intron | 35.0% | |
| TTGGGCTATTCCTAGAATTA+AGG | + | chr6.1:79761212-79761231 | MS.gene66293:CDS | 35.0% | |
| TTGTCTTCAAAACTGGATGT+AGG | - | chr6.1:79762809-79762828 | None:intergenic | 35.0% | |
| TTTATTATAGGCACTTGTGG+TGG | + | chr6.1:79761618-79761637 | MS.gene66293:intron | 35.0% | |
| TTTGGAAATGGCTTACTTAC+AGG | + | chr6.1:79761943-79761962 | MS.gene66293:intron | 35.0% | |
| ! | TAATTCTAGGAATAGCCCAA+TGG | - | chr6.1:79761212-79761231 | None:intergenic | 35.0% |
| !! | CTAGACGTTGATTGGATTTT+GGG | + | chr6.1:79761967-79761986 | MS.gene66293:intron | 35.0% |
| !! | TCTAGACGTTGATTGGATTT+TGG | + | chr6.1:79761966-79761985 | MS.gene66293:intron | 35.0% |
| !!! | AGCTATTTTTACAGCCTGTT+CGG | + | chr6.1:79763584-79763603 | MS.gene66293:CDS | 35.0% |
| !!! | GGGTTTTAGATCTCTTTTTG+TGG | + | chr6.1:79762452-79762471 | MS.gene66293:intron | 35.0% |
| !!! | TGGTTCGTCCTTTTTTCATT+TGG | + | chr6.1:79761999-79762018 | MS.gene66293:intron | 35.0% |
| AAATCACCTACAACAGGACA+TGG | - | chr6.1:79763084-79763103 | None:intergenic | 40.0% | |
| ACGTGCACCAATGCATATAT+TGG | - | chr6.1:79762082-79762101 | None:intergenic | 40.0% | |
| AGCGTCGTCGTATACTTATT+GGG | + | chr6.1:79761050-79761069 | MS.gene66293:CDS | 40.0% | |
| AGGACAATGAAGGGTTCAAT+AGG | - | chr6.1:79763274-79763293 | None:intergenic | 40.0% | |
| AGTTCACCAAATGAGATCTC+CGG | - | chr6.1:79761869-79761888 | None:intergenic | 40.0% | |
| CAGGAATTGCTCATTTCTGT+GGG | + | chr6.1:79761324-79761343 | MS.gene66293:intron | 40.0% | |
| CGTGCACCAATGCATATATT+GGG | - | chr6.1:79762081-79762100 | None:intergenic | 40.0% | |
| CTACATACAAGCCCAAATCA+CGG | - | chr6.1:79762163-79762182 | None:intergenic | 40.0% | |
| CTTAATAGCCACACATGTTG+TGG | + | chr6.1:79762116-79762135 | MS.gene66293:intron | 40.0% | |
| GAGCTGTCCTTAAAAGTGAA+AGG | + | chr6.1:79761676-79761695 | MS.gene66293:CDS | 40.0% | |
| GATTTGGGCTTGTATGTAGA+AGG | + | chr6.1:79762164-79762183 | MS.gene66293:intron | 40.0% | |
| GGAAATAAGAAGTTGCTTGG+AGG | + | chr6.1:79761830-79761849 | MS.gene66293:CDS | 40.0% | |
| GGGAGATCAAGAAAAACCTT+AGG | + | chr6.1:79762220-79762239 | MS.gene66293:intron | 40.0% | |
| GTTAAGCCACTAAAGTCTTG+TGG | + | chr6.1:79762783-79762802 | MS.gene66293:intron | 40.0% | |
| TACAATTGGATACAGGGGAA+TGG | + | chr6.1:79761798-79761817 | MS.gene66293:intron | 40.0% | |
| TCAGGAATTGCTCATTTCTG+TGG | + | chr6.1:79761323-79761342 | MS.gene66293:intron | 40.0% | |
| TTACAGGTCTAGACGTTGAT+TGG | + | chr6.1:79761959-79761978 | MS.gene66293:intron | 40.0% | |
| ! | AGCTTTTGTGGAACAGGTAA+AGG | - | chr6.1:79761102-79761121 | None:intergenic | 40.0% |
| ! | CATCTTTTCCACAACATGTG+TGG | - | chr6.1:79762127-79762146 | None:intergenic | 40.0% |
| ! | GATTGTTGCTGTAGCTTTTG+TGG | - | chr6.1:79761114-79761133 | None:intergenic | 40.0% |
| ! | GGTTGATGTAGGACAATGAA+GGG | - | chr6.1:79763283-79763302 | None:intergenic | 40.0% |
| ! | GTAATCTATGTGGTGGGATA+AGG | - | chr6.1:79762960-79762979 | None:intergenic | 40.0% |
| ! | TCACTGATAGAAACTGGTTC+AGG | + | chr6.1:79762338-79762357 | MS.gene66293:intron | 40.0% |
| !! | AAAGAGTAATTGACTCGGTG+TGG | - | chr6.1:79761269-79761288 | None:intergenic | 40.0% |
| !! | ACAGGGGAATGGATTATACA+AGG | + | chr6.1:79761809-79761828 | MS.gene66293:intron | 40.0% |
| !! | CATTAATGCTGGTGGACTAA+GGG | - | chr6.1:79763220-79763239 | None:intergenic | 40.0% |
| !! | CGACTCACCTTTCACTTTTA+AGG | - | chr6.1:79761686-79761705 | None:intergenic | 40.0% |
| !! | TCAGACACTGACTTTGGAAA+TGG | + | chr6.1:79761931-79761950 | MS.gene66293:intron | 40.0% |
| !!! | CACTTTTCAGACACTGACTT+TGG | + | chr6.1:79761925-79761944 | MS.gene66293:intron | 40.0% |
| !!! | GCTATTTTTACAGCCTGTTC+GGG | + | chr6.1:79763585-79763604 | MS.gene66293:CDS | 40.0% |
| ACCTACAACAGGACATGGAT+TGG | - | chr6.1:79763079-79763098 | None:intergenic | 45.0% | |
| ATAGACGACAAACCTGGCAA+AGG | + | chr6.1:79762199-79762218 | MS.gene66293:intron | 45.0% | |
| ATATCATTCTCCTCTGGCAG+AGG | + | chr6.1:79761351-79761370 | MS.gene66293:CDS | 45.0% | |
| ATGACGTCACTCCTCCATTA+AGG | - | chr6.1:79760999-79761018 | None:intergenic | 45.0% | |
| CAGCGTCGTCGTATACTTAT+TGG | + | chr6.1:79761049-79761068 | MS.gene66293:CDS | 45.0% | |
| CTCATCAATTGGGTTCTGCT+TGG | + | chr6.1:79761151-79761170 | MS.gene66293:CDS | 45.0% | |
| CTTAGGTCAAATCTCCGAGA+AGG | + | chr6.1:79762237-79762256 | MS.gene66293:intron | 45.0% | |
| CTTCTCGGAGATTTGACCTA+AGG | - | chr6.1:79762239-79762258 | None:intergenic | 45.0% | |
| GACCAAATAGACGACAAACC+TGG | + | chr6.1:79762193-79762212 | MS.gene66293:intron | 45.0% | |
| GATGTTCCGGAGATCTCATT+TGG | + | chr6.1:79761860-79761879 | MS.gene66293:CDS | 45.0% | |
| GGTTCCATATCATTCTCCTC+TGG | + | chr6.1:79761345-79761364 | MS.gene66293:CDS | 45.0% | |
| TACGACACTATGCTAGTAGG+AGG | + | chr6.1:79762044-79762063 | MS.gene66293:intron | 45.0% | |
| TAGACGACAAACCTGGCAAA+GGG | + | chr6.1:79762200-79762219 | MS.gene66293:intron | 45.0% | |
| TCCAATCCATGTCCTGTTGT+AGG | + | chr6.1:79763075-79763094 | MS.gene66293:intron | 45.0% | |
| TCTGCCAGAGGAGAATGATA+TGG | - | chr6.1:79761352-79761371 | None:intergenic | 45.0% | |
| TGACGTCACTCCTCCATTAA+GGG | - | chr6.1:79760998-79761017 | None:intergenic | 45.0% | |
| TGCCAGGTTTGTCGTCTATT+TGG | - | chr6.1:79762198-79762217 | None:intergenic | 45.0% | |
| TGTAGGCCACAAGACTTTAG+TGG | - | chr6.1:79762792-79762811 | None:intergenic | 45.0% | |
| TTTCTTGATCTCCCTTTGCC+AGG | - | chr6.1:79762214-79762233 | None:intergenic | 45.0% | |
| ! | GGAGATCTCATTTGGTGAAC+TGG | + | chr6.1:79761868-79761887 | MS.gene66293:CDS | 45.0% |
| ! | TGAAGCAACTTTTCCCGAAC+AGG | - | chr6.1:79763601-79763620 | None:intergenic | 45.0% |
| ! | TGCTGTAGCTTTTGTGGAAC+AGG | - | chr6.1:79761108-79761127 | None:intergenic | 45.0% |
| ! | TGGTGAACTGGATGATTTGC+AGG | + | chr6.1:79761880-79761899 | MS.gene66293:CDS | 45.0% |
| !! | GCATTAATGCTGGTGGACTA+AGG | - | chr6.1:79763221-79763240 | None:intergenic | 45.0% |
| !! | GGGTCAACTGGAGTCATTTT+AGG | - | chr6.1:79763171-79763190 | None:intergenic | 45.0% |
| !! | GGGTTGATGTAGGACAATGA+AGG | - | chr6.1:79763284-79763303 | None:intergenic | 45.0% |
| !! | TAATTGACTCGGTGTGGTGT+AGG | - | chr6.1:79761263-79761282 | None:intergenic | 45.0% |
| !! | TTGAGAATAGGGTGCTGAGA+AGG | + | chr6.1:79762389-79762408 | MS.gene66293:intron | 45.0% |
| !!! | AATTAATTTTTTCTTTTAAA+TGG | + | chr6.1:79762502-79762521 | MS.gene66293:intron | 5.0% |
| GTCATCGTCGTCGAAATCGA+AGG | + | chr6.1:79761014-79761033 | MS.gene66293:CDS | 50.0% | |
| ! | TGGAGGGCATATCGATGTTC+CGG | + | chr6.1:79761847-79761866 | MS.gene66293:CDS | 50.0% |
| ! | TTGGAATCGTGCTGGCACTT+GGG | + | chr6.1:79761170-79761189 | MS.gene66293:CDS | 50.0% |
| !! | GAATAGGGTGCTGAGAAGGA+TGG | + | chr6.1:79762393-79762412 | MS.gene66293:intron | 50.0% |
| !!! | TGCTGGTGGACTAAGGGTTT+TGG | - | chr6.1:79763214-79763233 | None:intergenic | 50.0% |
| GGTTCTGCTTGGAATCGTGC+TGG | + | chr6.1:79761162-79761181 | MS.gene66293:CDS | 55.0% | |
| ! | CTTGGAATCGTGCTGGCACT+TGG | + | chr6.1:79761169-79761188 | MS.gene66293:CDS | 55.0% |
| TTGTGCTGTGCCTCTGCCAG+AGG | - | chr6.1:79761364-79761383 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 79760988 | 79763648 | 79760988 | ID=MS.gene66293 |
| chr6.1 | mRNA | 79760988 | 79763648 | 79760988 | ID=MS.gene66293.t1;Parent=MS.gene66293 |
| chr6.1 | exon | 79760988 | 79761233 | 79760988 | ID=MS.gene66293.t1.exon1;Parent=MS.gene66293.t1 |
| chr6.1 | CDS | 79760988 | 79761233 | 79760988 | ID=cds.MS.gene66293.t1;Parent=MS.gene66293.t1 |
| chr6.1 | exon | 79761327 | 79761413 | 79761327 | ID=MS.gene66293.t1.exon2;Parent=MS.gene66293.t1 |
| chr6.1 | CDS | 79761327 | 79761413 | 79761327 | ID=cds.MS.gene66293.t1;Parent=MS.gene66293.t1 |
| chr6.1 | exon | 79761628 | 79761697 | 79761628 | ID=MS.gene66293.t1.exon3;Parent=MS.gene66293.t1 |
| chr6.1 | CDS | 79761628 | 79761697 | 79761628 | ID=cds.MS.gene66293.t1;Parent=MS.gene66293.t1 |
| chr6.1 | exon | 79761813 | 79761901 | 79761813 | ID=MS.gene66293.t1.exon4;Parent=MS.gene66293.t1 |
| chr6.1 | CDS | 79761813 | 79761901 | 79761813 | ID=cds.MS.gene66293.t1;Parent=MS.gene66293.t1 |
| chr6.1 | exon | 79763514 | 79763648 | 79763514 | ID=MS.gene66293.t1.exon5;Parent=MS.gene66293.t1 |
| chr6.1 | CDS | 79763514 | 79763648 | 79763514 | ID=cds.MS.gene66293.t1;Parent=MS.gene66293.t1 |
| Gene Sequence |
| Protein sequence |
