Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72900.t1 | XP_003612700.1 | 97.3 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 2.20E-72 | 281.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72900.t1 | G7K9J9 | 97.3 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 1.6e-72 | 281.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene72900 | -0.822088 | 2.86E-53 | -1.69E-46 |
| MS.gene04933 | MS.gene72900 | -0.819124 | 1.37E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene72900 | -0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene72900 | -0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene72900 | -0.813386 | 2.63E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene72900 | -0.805563 | 1.26E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene72900 | -0.821054 | 4.95E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene72900 | -0.812638 | 3.83E-51 | -1.69E-46 |
| MS.gene050787 | MS.gene72900 | -0.858713 | 6.82E-63 | -1.69E-46 |
| MS.gene050820 | MS.gene72900 | -0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene72900 | -0.8297 | 4.44E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene72900 | -0.806291 | 8.84E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene72900 | -0.809323 | 2.00E-50 | -1.69E-46 |
| MS.gene052673 | MS.gene72900 | 0.826498 | 2.62E-54 | -1.69E-46 |
| MS.gene053147 | MS.gene72900 | -0.802326 | 5.92E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene72900 | -0.814646 | 1.39E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene72900 | -0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene72900 | -0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene72900 | -0.814016 | 1.91E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene72900 | -0.807211 | 5.65E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene72900 | 0.86172 | 8.41E-64 | -1.69E-46 |
| MS.gene054467 | MS.gene72900 | -0.825424 | 4.72E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene72900 | -0.849408 | 3.30E-60 | -1.69E-46 |
| MS.gene054473 | MS.gene72900 | -0.821575 | 3.75E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene72900 | -0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene054942 | MS.gene72900 | -0.820948 | 5.24E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene72900 | -0.839992 | 1.14E-57 | -1.69E-46 |
| MS.gene055357 | MS.gene72900 | -0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene72900 | -0.842756 | 2.13E-58 | -1.69E-46 |
| MS.gene055701 | MS.gene72900 | -0.807313 | 5.37E-50 | -1.69E-46 |
| MS.gene05595 | MS.gene72900 | -0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene057414 | MS.gene72900 | -0.80801 | 3.82E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene72900 | -0.816355 | 5.77E-52 | -1.69E-46 |
| MS.gene057639 | MS.gene72900 | -0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene059896 | MS.gene72900 | 0.820896 | 5.38E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene72900 | 0.880787 | 4.11E-70 | -1.69E-46 |
| MS.gene060553 | MS.gene72900 | -0.825886 | 3.67E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene72900 | 0.829608 | 4.68E-55 | -1.69E-46 |
| MS.gene060802 | MS.gene72900 | -0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene72900 | -0.806753 | 7.06E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene72900 | 0.829923 | 3.92E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene72900 | 0.864393 | 1.26E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72900.t1 | MTR_5g027940 | 97.333 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 2.44e-102 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72900.t1 | AT1G31940 | 68.000 | 150 | 45 | 3 | 1 | 149 | 1 | 148 | 3.78e-61 | 186 |
| MS.gene72900.t1 | AT2G35585 | 59.091 | 154 | 57 | 3 | 1 | 150 | 1 | 152 | 4.99e-55 | 170 |
| MS.gene72900.t1 | AT2G35585 | 67.470 | 83 | 25 | 1 | 1 | 83 | 1 | 81 | 3.44e-32 | 111 |
Find 41 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTTACATTAAGAATAGA+TGG | 0.331681 | 5.1:-18917173 | None:intergenic |
| GCTGCCACCTCTGAATTTGC+AGG | 0.373843 | 5.1:-18917023 | None:intergenic |
| GAATAGATGGTTCTGGCAAC+GGG | 0.396306 | 5.1:-18917160 | None:intergenic |
| ATAATCAGGATGGAAGAATA+TGG | 0.406041 | 5.1:+18918534 | MS.gene72900:intron |
| TCTGGCAACGGGCACTGAAT+TGG | 0.410974 | 5.1:-18917149 | None:intergenic |
| ACATTAAGAATAGATGGTTC+TGG | 0.414371 | 5.1:-18917167 | None:intergenic |
| GGTTCAACGGGATGTTCAAC+AGG | 0.438705 | 5.1:-18917110 | None:intergenic |
| CTAAAACTTCTTGAAGAGTC+GGG | 0.450335 | 5.1:+18918716 | MS.gene72900:CDS |
| CCCCTTCCTTCATTACTGGC+AGG | 0.453333 | 5.1:-18918595 | None:intergenic |
| TCATTGTCAAGGGGTTCAAC+GGG | 0.469960 | 5.1:-18917122 | None:intergenic |
| GCTGCTACTGCAACTTCTCA+TGG | 0.475047 | 5.1:+18917062 | MS.gene72900:CDS |
| GATCTTCGCGGCCGAGGAGC+AGG | 0.480306 | 5.1:-18918641 | None:intergenic |
| AGAATAGATGGTTCTGGCAA+CGG | 0.495108 | 5.1:-18917161 | None:intergenic |
| TCTAAAACTTCTTGAAGAGT+CGG | 0.502484 | 5.1:+18918715 | MS.gene72900:CDS |
| ATCATTGTCAAGGGGTTCAA+CGG | 0.508386 | 5.1:-18917123 | None:intergenic |
| AGGCGACCTGCCAGTAATGA+AGG | 0.511434 | 5.1:+18918589 | MS.gene72900:CDS |
| GAGTGAGATCTTCGCGGCCG+AGG | 0.534691 | 5.1:-18918647 | None:intergenic |
| TCTGCTACCGTGCGTAGAAG+AGG | 0.536224 | 5.1:+18918569 | MS.gene72900:CDS |
| GAGCACTTTGTGTTCGTCGA+TGG | 0.546426 | 5.1:-18915973 | None:intergenic |
| TTCATATTGTGCAGGATGAG+AGG | 0.549681 | 5.1:+18916991 | MS.gene72900:intron |
| AGTCTGAAGGTCCTGCTCCT+CGG | 0.551322 | 5.1:+18918630 | MS.gene72900:CDS |
| AATTGGTCGATCATTGTCAA+GGG | 0.555985 | 5.1:-18917132 | None:intergenic |
| TCGACGAACACAAAGTGCTC+TGG | 0.567519 | 5.1:+18915976 | MS.gene72900:CDS |
| CGATTAGAGTGAGATCTTCG+CGG | 0.570292 | 5.1:-18918653 | None:intergenic |
| AGCAGGACCTTCAGACTCAA+GGG | 0.570495 | 5.1:-18918624 | None:intergenic |
| GACCTGCCAGTAATGAAGGA+AGG | 0.572263 | 5.1:+18918593 | MS.gene72900:CDS |
| ACCTGCCAGTAATGAAGGAA+GGG | 0.574103 | 5.1:+18918594 | MS.gene72900:CDS |
| GAGCAGGACCTTCAGACTCA+AGG | 0.580634 | 5.1:-18918625 | None:intergenic |
| TCATATTGTGCAGGATGAGA+GGG | 0.588693 | 5.1:+18916992 | MS.gene72900:intron |
| TGTGCAGGATGAGAGGGAAG+TGG | 0.602862 | 5.1:+18916998 | MS.gene72900:intron |
| GGAGGAGCCCTTGAGTCTGA+AGG | 0.609978 | 5.1:+18918617 | MS.gene72900:CDS |
| CAGGAGCACTAAGAGATGGT+AGG | 0.611171 | 5.1:-18918682 | None:intergenic |
| CCTGCCAGTAATGAAGGAAG+GGG | 0.615779 | 5.1:+18918595 | MS.gene72900:CDS |
| TGCTCAGGAGCACTAAGAGA+TGG | 0.615904 | 5.1:-18918686 | None:intergenic |
| AACTTCTCATGGAATTGAAG+TGG | 0.616117 | 5.1:+18917073 | MS.gene72900:CDS |
| GAATTGGTCGATCATTGTCA+AGG | 0.618802 | 5.1:-18917133 | None:intergenic |
| GGCACCTGCAAATTCAGAGG+TGG | 0.646288 | 5.1:+18917019 | MS.gene72900:CDS |
| AGTGGCACCTGCAAATTCAG+AGG | 0.653813 | 5.1:+18917016 | MS.gene72900:CDS |
| CAGGTCGCCTCTTCTACGCA+CGG | 0.654840 | 5.1:-18918576 | None:intergenic |
| ATTGGTCGATCATTGTCAAG+GGG | 0.666758 | 5.1:-18917131 | None:intergenic |
| CTGCCAGTAATGAAGGAAGG+GGG | 0.698973 | 5.1:+18918596 | MS.gene72900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATAACAAAC+CGG | - | chr5.1:18917540-18917559 | None:intergenic | 10.0% |
| !! | AAAATTTAATGTGAAGTTTA+TGG | + | chr5.1:18916314-18916333 | MS.gene72900:intron | 15.0% |
| !! | AATTACTAACAACAATATTA+TGG | + | chr5.1:18917719-18917738 | MS.gene72900:intron | 15.0% |
| !! | ATTACTAACAACAATATTAT+GGG | + | chr5.1:18917720-18917739 | MS.gene72900:intron | 15.0% |
| !!! | AAAATATAAGAAGTATGATA+TGG | + | chr5.1:18917585-18917604 | MS.gene72900:intron | 15.0% |
| !!! | GGTTTGTTATTTTTTTTTTT+TGG | + | chr5.1:18917539-18917558 | MS.gene72900:intron | 15.0% |
| !! | ACCACTAACATATAAAAAAA+AGG | - | chr5.1:18917831-18917850 | None:intergenic | 20.0% |
| !! | ATTGCAAATTAAGTATCATA+TGG | - | chr5.1:18917426-18917445 | None:intergenic | 20.0% |
| !! | TTGCAAATTAAGTATCATAT+GGG | - | chr5.1:18917425-18917444 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAGTTTA+TGG | + | chr5.1:18916558-18916577 | MS.gene72900:intron | 20.0% |
| !!! | AATAAGTTGAAAACGATTTA+TGG | + | chr5.1:18916492-18916511 | MS.gene72900:intron | 20.0% |
| !!! | ACTGTATTATTGTTGTTAAT+CGG | + | chr5.1:18917286-18917305 | MS.gene72900:intron | 20.0% |
| !!! | ATAAGTTGAAAACAGTTTAT+GGG | + | chr5.1:18916559-18916578 | MS.gene72900:intron | 20.0% |
| !!! | ATAAGTTGAAAACGATTTAT+GGG | + | chr5.1:18916493-18916512 | MS.gene72900:intron | 20.0% |
| !!! | ATACTTCTTATATTTTCACA+TGG | - | chr5.1:18917581-18917600 | None:intergenic | 20.0% |
| !!! | TTAATTGCTAATGATTCTTT+TGG | + | chr5.1:18918326-18918345 | MS.gene72900:intron | 20.0% |
| !!! | TTTAGAAATATAGCTCTATT+TGG | + | chr5.1:18916344-18916363 | MS.gene72900:intron | 20.0% |
| !!! | TTTGTAAAATGTTCTGTTTT+TGG | + | chr5.1:18916092-18916111 | MS.gene72900:intron | 20.0% |
| ! | AAAACAACTTATAGCTCATA+TGG | - | chr5.1:18916762-18916781 | None:intergenic | 25.0% |
| ! | AAAAGCTTATTATTGCACTT+TGG | + | chr5.1:18918364-18918383 | MS.gene72900:intron | 25.0% |
| ! | AAATAAACATAGGACATGTT+TGG | - | chr5.1:18916917-18916936 | None:intergenic | 25.0% |
| ! | AATCTTATTCGTCAATAATC+AGG | + | chr5.1:18918520-18918539 | MS.gene72900:intron | 25.0% |
| ! | AATGTGAAGTTTATGGAATT+GGG | + | chr5.1:18916321-18916340 | MS.gene72900:intron | 25.0% |
| ! | ACAACAATAATACAGTTCTA+CGG | - | chr5.1:18917282-18917301 | None:intergenic | 25.0% |
| ! | ACTTTGCATATAAATAAGCA+TGG | + | chr5.1:18918397-18918416 | MS.gene72900:intron | 25.0% |
| ! | CAAGTATTTAATCCAGAATA+AGG | - | chr5.1:18917470-18917489 | None:intergenic | 25.0% |
| ! | CAATAAAATAAAACACGACT+CGG | + | chr5.1:18917976-18917995 | MS.gene72900:intron | 25.0% |
| ! | CTTAATGTAAGACGAATATA+TGG | + | chr5.1:18917182-18917201 | MS.gene72900:intron | 25.0% |
| ! | GAAACAGCATAACTTTATTA+GGG | - | chr5.1:18916740-18916759 | None:intergenic | 25.0% |
| ! | TAATGTGAAGTTTATGGAAT+TGG | + | chr5.1:18916320-18916339 | MS.gene72900:intron | 25.0% |
| ! | TTGAAATGCACAATTCAATA+AGG | - | chr5.1:18917510-18917529 | None:intergenic | 25.0% |
| ! | TTTATGATCATCACAATTTG+TGG | + | chr5.1:18916061-18916080 | MS.gene72900:intron | 25.0% |
| !! | AATATTGGATTTTATCTTGC+CGG | + | chr5.1:18917389-18917408 | MS.gene72900:intron | 25.0% |
| !! | ATTGTTGTTAATCGGTATAT+GGG | + | chr5.1:18917294-18917313 | MS.gene72900:intron | 25.0% |
| !! | TATTGTTGTTAATCGGTATA+TGG | + | chr5.1:18917293-18917312 | MS.gene72900:intron | 25.0% |
| !! | TTTTGTTCTGCTTCTTAAAA+TGG | + | chr5.1:18917773-18917792 | MS.gene72900:intron | 25.0% |
| !!! | ATATGTTAGTGGTTTTTTGT+TGG | + | chr5.1:18917838-18917857 | MS.gene72900:intron | 25.0% |
| !!! | GCCTTTTTTTTATATGTTAG+TGG | + | chr5.1:18917827-18917846 | MS.gene72900:intron | 25.0% |
| !!! | TATGTTAGTGGTTTTTTGTT+GGG | + | chr5.1:18917839-18917858 | MS.gene72900:intron | 25.0% |
| !!! | TTCAATAAGGCTTTTTGTTT+TGG | - | chr5.1:18917497-18917516 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTTGAAGATAGAA+GGG | - | chr5.1:18918148-18918167 | None:intergenic | 25.0% |
| AACAATATTATGGGATGTTG+TGG | + | chr5.1:18917729-18917748 | MS.gene72900:intron | 30.0% | |
| AACACTTCATTAACCTTACA+AGG | - | chr5.1:18916271-18916290 | None:intergenic | 30.0% | |
| ACAATATTATGGGATGTTGT+GGG | + | chr5.1:18917730-18917749 | MS.gene72900:intron | 30.0% | |
| ACATTAAGAATAGATGGTTC+TGG | - | chr5.1:18917170-18917189 | None:intergenic | 30.0% | |
| ATAATCAGGATGGAAGAATA+TGG | + | chr5.1:18918534-18918553 | MS.gene72900:intron | 30.0% | |
| ATCTTCAAAAGCTAAAGCAA+CGG | + | chr5.1:18918152-18918171 | MS.gene72900:intron | 30.0% | |
| CAACACAAAAACAAAGAACA+AGG | - | chr5.1:18916139-18916158 | None:intergenic | 30.0% | |
| CGTCTTACATTAAGAATAGA+TGG | - | chr5.1:18917176-18917195 | None:intergenic | 30.0% | |
| CTGAACAGACAAATAAACAT+AGG | - | chr5.1:18916927-18916946 | None:intergenic | 30.0% | |
| GCAATATTTGCATGCTATAA+TGG | + | chr5.1:18917441-18917460 | MS.gene72900:intron | 30.0% | |
| GGAAACAGCATAACTTTATT+AGG | - | chr5.1:18916741-18916760 | None:intergenic | 30.0% | |
| GGCAAGATAAAATCCAATAT+TGG | - | chr5.1:18917390-18917409 | None:intergenic | 30.0% | |
| GTCTATCCTTTGATACAATT+AGG | + | chr5.1:18918006-18918025 | MS.gene72900:intron | 30.0% | |
| TCTAACTTATCTGATTACCA+AGG | - | chr5.1:18917620-18917639 | None:intergenic | 30.0% | |
| TTATGTGGACGAGTTATAAT+TGG | + | chr5.1:18916951-18916970 | MS.gene72900:intron | 30.0% | |
| TTATTCGTCAATAATCAGGA+TGG | + | chr5.1:18918524-18918543 | MS.gene72900:intron | 30.0% | |
| TTGCATATAAATAAGCATGG+TGG | + | chr5.1:18918400-18918419 | MS.gene72900:intron | 30.0% | |
| TTTAACCACTGTGCTTAAAT+TGG | - | chr5.1:18918435-18918454 | None:intergenic | 30.0% | |
| TTTGATACAATTAGGTAGCT+CGG | + | chr5.1:18918014-18918033 | MS.gene72900:intron | 30.0% | |
| ! | TCTAAAACTTCTTGAAGAGT+CGG | + | chr5.1:18918715-18918734 | MS.gene72900:CDS | 30.0% |
| ! | TGTGTTGTTGGATCAAATTT+GGG | + | chr5.1:18916152-18916171 | MS.gene72900:intron | 30.0% |
| ! | TTGTGTTGTTGGATCAAATT+TGG | + | chr5.1:18916151-18916170 | MS.gene72900:intron | 30.0% |
| ! | TTGTTTTCTAGATTCTCTGT+TGG | + | chr5.1:18915941-18915960 | MS.gene72900:CDS | 30.0% |
| !! | AATGAAGTGTTGATGTGATT+TGG | + | chr5.1:18916280-18916299 | MS.gene72900:intron | 30.0% |
| !! | AGTTGTTTTCATAAGCTATC+TGG | + | chr5.1:18916522-18916541 | MS.gene72900:intron | 30.0% |
| !! | CTTATTTTCATAAGCTCTAC+AGG | - | chr5.1:18916478-18916497 | None:intergenic | 30.0% |
| !!! | AGTTTTAGAAGATTATGCTC+AGG | - | chr5.1:18918704-18918723 | None:intergenic | 30.0% |
| !!! | ATGTTAGTGGTTTTTTGTTG+GGG | + | chr5.1:18917840-18917859 | MS.gene72900:intron | 30.0% |
| !!! | CTTTAGCTTTTGAAGATAGA+AGG | - | chr5.1:18918149-18918168 | None:intergenic | 30.0% |
| !!! | GAATGCTATTTTTCCTTGTA+AGG | + | chr5.1:18916255-18916274 | MS.gene72900:intron | 30.0% |
| !!! | GTTCTTTGTTTTTGTGTTGT+TGG | + | chr5.1:18916140-18916159 | MS.gene72900:intron | 30.0% |
| !!! | TTGTTACCATTTAGCTTTTG+TGG | + | chr5.1:18918491-18918510 | MS.gene72900:intron | 30.0% |
| AACTTCTCATGGAATTGAAG+TGG | + | chr5.1:18917073-18917092 | MS.gene72900:CDS | 35.0% | |
| AAGCTATCTCGTAGAGTTAA+TGG | + | chr5.1:18916600-18916619 | MS.gene72900:intron | 35.0% | |
| AAGTTAACATGTCGAGCTTA+TGG | + | chr5.1:18916785-18916804 | MS.gene72900:intron | 35.0% | |
| AATAATAGTAGATGCCTACC+TGG | + | chr5.1:18918205-18918224 | MS.gene72900:intron | 35.0% | |
| AATTGGTCGATCATTGTCAA+GGG | - | chr5.1:18917135-18917154 | None:intergenic | 35.0% | |
| ACATACCAATTTAAGCACAG+TGG | + | chr5.1:18918427-18918446 | MS.gene72900:intron | 35.0% | |
| AGTCAATGACTAACAAGTAG+TGG | - | chr5.1:18918111-18918130 | None:intergenic | 35.0% | |
| ATAGTTCACTGTGCTTAACT+TGG | - | chr5.1:18918462-18918481 | None:intergenic | 35.0% | |
| CTAAAACTTCTTGAAGAGTC+GGG | + | chr5.1:18918716-18918735 | MS.gene72900:CDS | 35.0% | |
| CTATAATGGTCACCTTATTC+TGG | + | chr5.1:18917455-18917474 | MS.gene72900:intron | 35.0% | |
| CTTTCATCTGTGTCCAATAT+TGG | + | chr5.1:18917374-18917393 | MS.gene72900:intron | 35.0% | |
| GAGCTACCTAATTGTATCAA+AGG | - | chr5.1:18918015-18918034 | None:intergenic | 35.0% | |
| GCAAAAATACTAATCCAGGT+AGG | - | chr5.1:18918222-18918241 | None:intergenic | 35.0% | |
| GGAAGACAAGACAAAAGTAA+CGG | - | chr5.1:18918246-18918265 | None:intergenic | 35.0% | |
| TCAGAACCACAAAAGCTAAA+TGG | - | chr5.1:18918500-18918519 | None:intergenic | 35.0% | |
| TCATATGGGTTTGAAAACAC+CGG | - | chr5.1:18917411-18917430 | None:intergenic | 35.0% | |
| TCTTCAAAAGCTAAAGCAAC+GGG | + | chr5.1:18918153-18918172 | MS.gene72900:intron | 35.0% | |
| TGATATGGTGTTTAATGCCT+TGG | + | chr5.1:18917600-18917619 | MS.gene72900:intron | 35.0% | |
| TGTCTGTTCAGTAAGTTATG+TGG | + | chr5.1:18916936-18916955 | MS.gene72900:intron | 35.0% | |
| TTCTATAAGCTTTCCCAGAT+AGG | + | chr5.1:18916848-18916867 | MS.gene72900:intron | 35.0% | |
| ! | AGTGGTTATCTCAGTTTTCA+GGG | - | chr5.1:18918093-18918112 | None:intergenic | 35.0% |
| ! | ATTGTTCTAAGTCGTCTTGA+TGG | - | chr5.1:18917671-18917690 | None:intergenic | 35.0% |
| ! | TAGTGGTTATCTCAGTTTTC+AGG | - | chr5.1:18918094-18918113 | None:intergenic | 35.0% |
| !! | AATAAAACACGACTCGGTTA+TGG | + | chr5.1:18917982-18918001 | MS.gene72900:intron | 35.0% |
| !! | ATAAGTTAGAGTGTCGAGAA+GGG | + | chr5.1:18917630-18917649 | MS.gene72900:intron | 35.0% |
| AAAAGCTAAAGCAACGGGTA+GGG | + | chr5.1:18918158-18918177 | MS.gene72900:intron | 40.0% | |
| AAGCACTAGTAAGCCTATCT+GGG | - | chr5.1:18916864-18916883 | None:intergenic | 40.0% | |
| ATCATTGTCAAGGGGTTCAA+CGG | - | chr5.1:18917126-18917145 | None:intergenic | 40.0% | |
| ATTGGTCGATCATTGTCAAG+GGG | - | chr5.1:18917134-18917153 | None:intergenic | 40.0% | |
| CCTTCTGCTTAAAACTCCTT+TGG | - | chr5.1:18918057-18918076 | None:intergenic | 40.0% | |
| CGGAGCAAAAATACTAATCC+AGG | - | chr5.1:18918226-18918245 | None:intergenic | 40.0% | |
| CTTGTCTTCCCTACTTCTAT+TGG | + | chr5.1:18918256-18918275 | MS.gene72900:intron | 40.0% | |
| GAATTGGTCGATCATTGTCA+AGG | - | chr5.1:18917136-18917155 | None:intergenic | 40.0% | |
| GGTATCAAGAAGAAGGTCAA+AGG | - | chr5.1:18917896-18917915 | None:intergenic | 40.0% | |
| GTAGCTCGGTTAGTGATTAA+GGG | + | chr5.1:18918028-18918047 | MS.gene72900:intron | 40.0% | |
| TAGTGATTAAGGGACACCAA+AGG | + | chr5.1:18918038-18918057 | MS.gene72900:intron | 40.0% | |
| TCATATTGTGCAGGATGAGA+GGG | + | chr5.1:18916992-18917011 | MS.gene72900:intron | 40.0% | |
| TGACTGTGCCAATAGAAGTA+GGG | - | chr5.1:18918267-18918286 | None:intergenic | 40.0% | |
| TGTGCATTTCAAAAGCTTGC+CGG | + | chr5.1:18917518-18917537 | MS.gene72900:intron | 40.0% | |
| TTCATATTGTGCAGGATGAG+AGG | + | chr5.1:18916991-18917010 | MS.gene72900:intron | 40.0% | |
| ! | AGCTTTTCCAAACAGTCTCA+CGG | + | chr5.1:18916670-18916689 | MS.gene72900:intron | 40.0% |
| ! | GACAAAAAGTGTGTCAAGTC+TGG | + | chr5.1:18917318-18917337 | MS.gene72900:intron | 40.0% |
| ! | TCAAGTCTGGTTGTGTTGTT+GGG | + | chr5.1:18917331-18917350 | MS.gene72900:intron | 40.0% |
| !! | AGAATAGATGGTTCTGGCAA+CGG | - | chr5.1:18917164-18917183 | None:intergenic | 40.0% |
| !! | AGTTTTCAGGGTTTAAACCC+TGG | - | chr5.1:18918081-18918100 | None:intergenic | 40.0% |
| !! | GATAAGTTAGAGTGTCGAGA+AGG | + | chr5.1:18917629-18917648 | MS.gene72900:intron | 40.0% |
| !! | GATGTGATTTGGTGTTGGAT+TGG | + | chr5.1:18916291-18916310 | MS.gene72900:intron | 40.0% |
| !! | GTGTTGACTTCATATTGTGC+AGG | + | chr5.1:18916983-18917002 | MS.gene72900:intron | 40.0% |
| !! | GTGTTGATGTGATTTGGTGT+TGG | + | chr5.1:18916286-18916305 | MS.gene72900:intron | 40.0% |
| !! | TTACGAAAACAGCGCTGATA+CGG | - | chr5.1:18916450-18916469 | None:intergenic | 40.0% |
| !!! | AGTTTTAAGCAGAAGGTCCA+GGG | + | chr5.1:18918061-18918080 | MS.gene72900:intron | 40.0% |
| !!! | CCAAAGGAGTTTTAAGCAGA+AGG | + | chr5.1:18918054-18918073 | MS.gene72900:intron | 40.0% |
| !!! | TAGTGGTTTTTTGTTGGGGA+GGG | + | chr5.1:18917844-18917863 | MS.gene72900:intron | 40.0% |
| !!! | TTAGTGGTTTTTTGTTGGGG+AGG | + | chr5.1:18917843-18917862 | MS.gene72900:intron | 40.0% |
| ACCTGCCAGTAATGAAGGAA+GGG | + | chr5.1:18918594-18918613 | MS.gene72900:CDS | 45.0% | |
| AGGGGGAAATTGTTAGCAAG+AGG | + | chr5.1:18917863-18917882 | MS.gene72900:intron | 45.0% | |
| CAAAAGCTAAAGCAACGGGT+AGG | + | chr5.1:18918157-18918176 | MS.gene72900:intron | 45.0% | |
| CGATTAGAGTGAGATCTTCG+CGG | - | chr5.1:18918656-18918675 | None:intergenic | 45.0% | |
| GGGGGAAATTGTTAGCAAGA+GGG | + | chr5.1:18917864-18917883 | MS.gene72900:intron | 45.0% | |
| GGTAGCTCGGTTAGTGATTA+AGG | + | chr5.1:18918027-18918046 | MS.gene72900:intron | 45.0% | |
| GTCAAGTCTGGTTGTGTTGT+TGG | + | chr5.1:18917330-18917349 | MS.gene72900:intron | 45.0% | |
| GTGACTGTGCCAATAGAAGT+AGG | - | chr5.1:18918268-18918287 | None:intergenic | 45.0% | |
| TAAACACCCGTGAGACTGTT+TGG | - | chr5.1:18916680-18916699 | None:intergenic | 45.0% | |
| TCATTGTCAAGGGGTTCAAC+GGG | - | chr5.1:18917125-18917144 | None:intergenic | 45.0% | |
| ! | GAAGCACTAGTAAGCCTATC+TGG | - | chr5.1:18916865-18916884 | None:intergenic | 45.0% |
| ! | GCTTTTCCAAACAGTCTCAC+GGG | + | chr5.1:18916671-18916690 | MS.gene72900:intron | 45.0% |
| !! | CTGAAGGGGTATCAAGAAGA+AGG | - | chr5.1:18917903-18917922 | None:intergenic | 45.0% |
| !! | GAATAGATGGTTCTGGCAAC+GGG | - | chr5.1:18917163-18917182 | None:intergenic | 45.0% |
| !!! | AGTGGTTTTTTGTTGGGGAG+GGG | + | chr5.1:18917845-18917864 | MS.gene72900:intron | 45.0% |
| !!! | GAGTTTTAAGCAGAAGGTCC+AGG | + | chr5.1:18918060-18918079 | MS.gene72900:intron | 45.0% |
| AGCAGGACCTTCAGACTCAA+GGG | - | chr5.1:18918627-18918646 | None:intergenic | 50.0% | |
| AGTGGCACCTGCAAATTCAG+AGG | + | chr5.1:18917016-18917035 | MS.gene72900:CDS | 50.0% | |
| CCTGAGGGCTACATCTTTGA+GGG | + | chr5.1:18917926-18917945 | MS.gene72900:intron | 50.0% | |
| CCTGCCAGTAATGAAGGAAG+GGG | + | chr5.1:18918595-18918614 | MS.gene72900:CDS | 50.0% | |
| CTGCCAGTAATGAAGGAAGG+GGG | + | chr5.1:18918596-18918615 | MS.gene72900:CDS | 50.0% | |
| GACCTGCCAGTAATGAAGGA+AGG | + | chr5.1:18918593-18918612 | MS.gene72900:CDS | 50.0% | |
| GAGCACTTTGTGTTCGTCGA+TGG | - | chr5.1:18915976-18915995 | None:intergenic | 50.0% | |
| GCTGCTACTGCAACTTCTCA+TGG | + | chr5.1:18917062-18917081 | MS.gene72900:CDS | 50.0% | |
| GGTTCAACGGGATGTTCAAC+AGG | - | chr5.1:18917113-18917132 | None:intergenic | 50.0% | |
| TCCTGAGGGCTACATCTTTG+AGG | + | chr5.1:18917925-18917944 | MS.gene72900:intron | 50.0% | |
| ! | TCGACGAACACAAAGTGCTC+TGG | + | chr5.1:18915976-18915995 | MS.gene72900:CDS | 50.0% |
| !! | CAGGAGCACTAAGAGATGGT+AGG | - | chr5.1:18918685-18918704 | None:intergenic | 50.0% |
| !! | TGCTCAGGAGCACTAAGAGA+TGG | - | chr5.1:18918689-18918708 | None:intergenic | 50.0% |
| !!! | GTGGTTTTTTGTTGGGGAGG+GGG | + | chr5.1:18917846-18917865 | MS.gene72900:intron | 50.0% |
| AGGCGACCTGCCAGTAATGA+AGG | + | chr5.1:18918589-18918608 | MS.gene72900:CDS | 55.0% | |
| AGTCTGAAGGTCCTGCTCCT+CGG | + | chr5.1:18918630-18918649 | MS.gene72900:CDS | 55.0% | |
| ATACCCCTTCAGCGTCCTGA+GGG | + | chr5.1:18917911-18917930 | MS.gene72900:intron | 55.0% | |
| CCAGTAATGAAGGAAGGGGG+AGG | + | chr5.1:18918599-18918618 | MS.gene72900:CDS | 55.0% | |
| CCCCTTCCTTCATTACTGGC+AGG | - | chr5.1:18918598-18918617 | None:intergenic | 55.0% | |
| CCCTCAAAGATGTAGCCCTC+AGG | - | chr5.1:18917929-18917948 | None:intergenic | 55.0% | |
| CCTCCCCCTTCCTTCATTAC+TGG | - | chr5.1:18918602-18918621 | None:intergenic | 55.0% | |
| GAGCAGGACCTTCAGACTCA+AGG | - | chr5.1:18918628-18918647 | None:intergenic | 55.0% | |
| GCTAAAGCAACGGGTAGGGT+TGG | + | chr5.1:18918162-18918181 | MS.gene72900:intron | 55.0% | |
| GCTGCCACCTCTGAATTTGC+AGG | - | chr5.1:18917026-18917045 | None:intergenic | 55.0% | |
| GGCACCTGCAAATTCAGAGG+TGG | + | chr5.1:18917019-18917038 | MS.gene72900:CDS | 55.0% | |
| TCTGCTACCGTGCGTAGAAG+AGG | + | chr5.1:18918569-18918588 | MS.gene72900:CDS | 55.0% | |
| TGTGCAGGATGAGAGGGAAG+TGG | + | chr5.1:18916998-18917017 | MS.gene72900:intron | 55.0% | |
| !! | TCTGGCAACGGGCACTGAAT+TGG | - | chr5.1:18917152-18917171 | None:intergenic | 55.0% |
| CAGGTCGCCTCTTCTACGCA+CGG | - | chr5.1:18918579-18918598 | None:intergenic | 60.0% | |
| GATACCCCTTCAGCGTCCTG+AGG | + | chr5.1:18917910-18917929 | MS.gene72900:intron | 60.0% | |
| GCAACGGGTAGGGTTGGAAG+TGG | + | chr5.1:18918168-18918187 | MS.gene72900:intron | 60.0% | |
| GGAGGAGCCCTTGAGTCTGA+AGG | + | chr5.1:18918617-18918636 | MS.gene72900:CDS | 60.0% | |
| GTAGCCCTCAGGACGCTGAA+GGG | - | chr5.1:18917918-18917937 | None:intergenic | 60.0% | |
| TAGCCCTCAGGACGCTGAAG+GGG | - | chr5.1:18917917-18917936 | None:intergenic | 60.0% | |
| TGTAGCCCTCAGGACGCTGA+AGG | - | chr5.1:18917919-18917938 | None:intergenic | 60.0% | |
| GAGTGAGATCTTCGCGGCCG+AGG | - | chr5.1:18918650-18918669 | None:intergenic | 65.0% | |
| GATCTTCGCGGCCGAGGAGC+AGG | - | chr5.1:18918644-18918663 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 18915932 | 18918745 | 18915932 | ID=MS.gene72900 |
| chr5.1 | mRNA | 18915932 | 18918745 | 18915932 | ID=MS.gene72900.t1;Parent=MS.gene72900 |
| chr5.1 | exon | 18915932 | 18915997 | 18915932 | ID=MS.gene72900.t1.exon1;Parent=MS.gene72900.t1 |
| chr5.1 | CDS | 18915932 | 18915997 | 18915932 | ID=cds.MS.gene72900.t1;Parent=MS.gene72900.t1 |
| chr5.1 | exon | 18917005 | 18917187 | 18917005 | ID=MS.gene72900.t1.exon2;Parent=MS.gene72900.t1 |
| chr5.1 | CDS | 18917005 | 18917187 | 18917005 | ID=cds.MS.gene72900.t1;Parent=MS.gene72900.t1 |
| chr5.1 | exon | 18918542 | 18918745 | 18918542 | ID=MS.gene72900.t1.exon3;Parent=MS.gene72900.t1 |
| chr5.1 | CDS | 18918542 | 18918745 | 18918542 | ID=cds.MS.gene72900.t1;Parent=MS.gene72900.t1 |
| Gene Sequence |
| Protein sequence |
