Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73228.t1 | XP_013454940.1 | 94.3 | 927 | 53 | 0 | 1 | 927 | 1 | 927 | 0.00E+00 | 1671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73228.t1 | A0A072UIS7 | 94.3 | 927 | 53 | 0 | 1 | 927 | 1 | 927 | 0.0e+00 | 1671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene73228 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene73228 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene73228 | 0.854259 | 1.39E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene73228 | 0.812846 | 3.45E-51 | -1.69E-46 |
| MS.gene051588 | MS.gene73228 | 0.846917 | 1.61E-59 | -1.69E-46 |
| MS.gene052011 | MS.gene73228 | -0.852314 | 5.01E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene73228 | 0.834785 | 2.45E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene73228 | 0.838643 | 2.55E-57 | -1.69E-46 |
| MS.gene052485 | MS.gene73228 | 0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene73228 | 0.859446 | 4.11E-63 | -1.69E-46 |
| MS.gene053169 | MS.gene73228 | 0.813074 | 3.08E-51 | -1.69E-46 |
| MS.gene053318 | MS.gene73228 | 0.820651 | 6.13E-53 | -1.69E-46 |
| MS.gene054173 | MS.gene73228 | 0.819782 | 9.69E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene73228 | 0.845278 | 4.49E-59 | -1.69E-46 |
| MS.gene054556 | MS.gene73228 | 0.825516 | 4.49E-54 | -1.69E-46 |
| MS.gene054719 | MS.gene73228 | 0.835126 | 2.01E-56 | -1.69E-46 |
| MS.gene054917 | MS.gene73228 | 0.823107 | 1.66E-53 | -1.69E-46 |
| MS.gene054918 | MS.gene73228 | 0.800678 | 1.29E-48 | -1.69E-46 |
| MS.gene054920 | MS.gene73228 | 0.841039 | 6.05E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene73228 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene055369 | MS.gene73228 | 0.83548 | 1.64E-56 | -1.69E-46 |
| MS.gene055892 | MS.gene73228 | 0.805677 | 1.19E-49 | -1.69E-46 |
| MS.gene055893 | MS.gene73228 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene05594 | MS.gene73228 | 0.856049 | 4.18E-62 | -1.69E-46 |
| MS.gene056514 | MS.gene73228 | 0.816236 | 6.14E-52 | -1.69E-46 |
| MS.gene057476 | MS.gene73228 | 0.816849 | 4.47E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene73228 | 0.826785 | 2.24E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene73228 | 0.825418 | 4.74E-54 | -1.69E-46 |
| MS.gene057825 | MS.gene73228 | 0.82582 | 3.81E-54 | -1.69E-46 |
| MS.gene057826 | MS.gene73228 | 0.810064 | 1.39E-50 | -1.69E-46 |
| MS.gene057888 | MS.gene73228 | 0.810634 | 1.05E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene73228 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene73228 | 0.835541 | 1.58E-56 | -1.69E-46 |
| MS.gene059141 | MS.gene73228 | 0.841673 | 4.12E-58 | -1.69E-46 |
| MS.gene059420 | MS.gene73228 | 0.867581 | 1.23E-65 | -1.69E-46 |
| MS.gene061154 | MS.gene73228 | 0.802106 | 6.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73228.t1 | MTR_4g019900 | 94.714 | 927 | 49 | 0 | 1 | 927 | 1 | 927 | 0.0 | 1715 |
| MS.gene73228.t1 | MTR_7g065880 | 45.061 | 901 | 395 | 26 | 49 | 927 | 16 | 838 | 0.0 | 580 |
| MS.gene73228.t1 | MTR_7g065880 | 44.005 | 809 | 367 | 23 | 49 | 835 | 16 | 760 | 1.02e-163 | 498 |
| MS.gene73228.t1 | MTR_4g064997 | 35.603 | 514 | 271 | 15 | 459 | 927 | 378 | 876 | 3.10e-62 | 227 |
| MS.gene73228.t1 | MTR_2g097850 | 35.071 | 422 | 226 | 10 | 537 | 927 | 511 | 915 | 1.98e-54 | 204 |
| MS.gene73228.t1 | MTR_1g073360 | 29.293 | 198 | 115 | 5 | 704 | 879 | 367 | 561 | 3.12e-19 | 93.2 |
| MS.gene73228.t1 | MTR_1g073360 | 29.293 | 198 | 115 | 5 | 704 | 879 | 402 | 596 | 3.40e-19 | 93.2 |
| MS.gene73228.t1 | MTR_5g010160 | 26.902 | 368 | 226 | 11 | 542 | 876 | 195 | 552 | 1.74e-14 | 78.2 |
| MS.gene73228.t1 | MTR_8g098260 | 24.756 | 513 | 241 | 21 | 542 | 927 | 807 | 1301 | 4.59e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73228.t1 | AT5G01030 | 37.367 | 471 | 212 | 15 | 472 | 927 | 342 | 744 | 7.98e-71 | 249 |
| MS.gene73228.t1 | AT5G01030 | 37.367 | 471 | 212 | 15 | 472 | 927 | 342 | 744 | 7.98e-71 | 249 |
| MS.gene73228.t1 | AT5G01030 | 37.367 | 471 | 212 | 15 | 472 | 927 | 342 | 744 | 7.98e-71 | 249 |
| MS.gene73228.t1 | AT2G29510 | 34.316 | 475 | 263 | 10 | 473 | 927 | 394 | 839 | 1.14e-64 | 234 |
| MS.gene73228.t1 | AT5G59020 | 31.034 | 493 | 273 | 13 | 473 | 927 | 317 | 780 | 4.24e-54 | 202 |
| MS.gene73228.t1 | AT2G37930 | 34.052 | 464 | 209 | 15 | 472 | 927 | 169 | 543 | 2.16e-49 | 184 |
| MS.gene73228.t1 | AT2G37930 | 34.052 | 464 | 209 | 15 | 472 | 927 | 197 | 571 | 2.25e-49 | 184 |
| MS.gene73228.t1 | AT2G37930 | 34.052 | 464 | 209 | 15 | 472 | 927 | 197 | 571 | 2.25e-49 | 184 |
| MS.gene73228.t1 | AT2G37930 | 34.225 | 374 | 157 | 14 | 472 | 835 | 197 | 491 | 2.95e-36 | 144 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT1G04490 | 37.607 | 117 | 59 | 4 | 765 | 880 | 289 | 392 | 1.06e-19 | 93.2 |
| MS.gene73228.t1 | AT2G33360 | 40.517 | 116 | 62 | 4 | 768 | 881 | 325 | 435 | 1.99e-18 | 89.7 |
| MS.gene73228.t1 | AT2G33360 | 40.517 | 116 | 62 | 4 | 768 | 881 | 480 | 590 | 3.11e-18 | 90.1 |
| MS.gene73228.t1 | AT1G63520 | 34.899 | 149 | 73 | 4 | 730 | 876 | 351 | 477 | 6.24e-18 | 89.0 |
| MS.gene73228.t1 | AT1G04490 | 44.444 | 72 | 27 | 3 | 765 | 835 | 289 | 348 | 1.76e-12 | 70.5 |
Find 186 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCTATGGCTATGTTTA+TGG | 0.115170 | 4.1:+78330795 | None:intergenic |
| CCAAGGAACCTGGTTGTTTC+TGG | 0.121277 | 4.1:+78328778 | None:intergenic |
| ACCAGACATCTTGTTTATTT+TGG | 0.128745 | 4.1:+78330472 | None:intergenic |
| CCTTCTGAAGATATGGTATT+TGG | 0.134107 | 4.1:-78331736 | MS.gene73228:CDS |
| ATTCACTGATTCAGTGAATT+TGG | 0.158512 | 4.1:+78329701 | None:intergenic |
| AAGTCTTCTGCTGTTGTTAT+TGG | 0.224622 | 4.1:+78328713 | None:intergenic |
| GGTTAAAGAATATGTCTTAT+TGG | 0.229796 | 4.1:-78329655 | MS.gene73228:CDS |
| CACTTCTCTTCGCAGTTTCC+CGG | 0.247251 | 4.1:+78331518 | None:intergenic |
| CGACTTGAAAGTGCAATTTC+AGG | 0.278575 | 4.1:+78330602 | None:intergenic |
| TTCAACAATCAGTCATTTAC+AGG | 0.283884 | 4.1:-78328832 | MS.gene73228:CDS |
| ACTTTGTTGCCGTTGAATAA+TGG | 0.284490 | 4.1:-78328876 | MS.gene73228:CDS |
| AACGGATCAGACCGAATAAC+AGG | 0.305934 | 4.1:-78331219 | MS.gene73228:CDS |
| TATTGGAACTTGGTTCCTTA+AGG | 0.308974 | 4.1:+78328730 | None:intergenic |
| AGTTCTACTGTTATTCTTCC+AGG | 0.317642 | 4.1:-78329483 | MS.gene73228:CDS |
| TATGAAACCTTCTGAAGATA+TGG | 0.321125 | 4.1:-78331743 | MS.gene73228:CDS |
| GCACATGAGAAGAATGATTT+AGG | 0.338212 | 4.1:-78329852 | MS.gene73228:CDS |
| TAACAACAGCAGAAGACTTC+AGG | 0.340482 | 4.1:-78328709 | MS.gene73228:CDS |
| TGATGAAGCTAAGCAGAAAA+TGG | 0.341705 | 4.1:-78331002 | MS.gene73228:CDS |
| AGACTACTTCGGCTTGATTC+TGG | 0.342643 | 4.1:+78330671 | None:intergenic |
| ATTCTTCCAGGTGGTGTACA+TGG | 0.343997 | 4.1:-78329471 | MS.gene73228:CDS |
| AAAAGGATGTGTTAGACAAT+AGG | 0.348011 | 4.1:-78330424 | MS.gene73228:CDS |
| CTGCTGTTGTTATTGGAACT+TGG | 0.350911 | 4.1:+78328720 | None:intergenic |
| AAACGACTAGTTAGATCTTC+TGG | 0.351862 | 4.1:+78331346 | None:intergenic |
| AAGTCAGCTCAGCAGTTTCT+TGG | 0.352085 | 4.1:+78330357 | None:intergenic |
| CTCATTCAGTTCTAAGAAAA+CGG | 0.353278 | 4.1:-78330882 | MS.gene73228:CDS |
| GTTAAAGAATATGTCTTATT+GGG | 0.356219 | 4.1:-78329654 | MS.gene73228:CDS |
| TACGTTTAAACTCTGCCAAC+AGG | 0.363429 | 4.1:+78328645 | None:intergenic |
| ATGTGCTGCTAAACTATTCT+TGG | 0.364355 | 4.1:+78329869 | None:intergenic |
| CTTCTCACTTCCTATCCTCT+TGG | 0.365421 | 4.1:+78331126 | None:intergenic |
| TTACTTGGTTGTATATTGAT+TGG | 0.367397 | 4.1:+78331772 | None:intergenic |
| ATTGGAACTTGGTTCCTTAA+GGG | 0.372550 | 4.1:+78328731 | None:intergenic |
| CAGTGACTCCTGAATCTTCT+AGG | 0.374114 | 4.1:-78330199 | MS.gene73228:CDS |
| GCATCAGGCACGCACCATTC+AGG | 0.384867 | 4.1:-78330080 | MS.gene73228:CDS |
| GGAAGTGCATCCCTGTTATT+CGG | 0.392157 | 4.1:+78331208 | None:intergenic |
| TCCCAACGCCTAGAAGATTC+AGG | 0.392268 | 4.1:+78330191 | None:intergenic |
| CAACGGCAACAAAGTGAAAT+GGG | 0.394423 | 4.1:+78328884 | None:intergenic |
| GGTTTCATAAATTCATTACT+TGG | 0.400918 | 4.1:+78331757 | None:intergenic |
| CTCTTGGATCCACTTCTAGA+AGG | 0.401913 | 4.1:+78331142 | None:intergenic |
| GATTATGCGATTGTGGTGGT+TGG | 0.405472 | 4.1:-78329395 | MS.gene73228:CDS |
| GTGAATCAGTTGCTGGAGTC+AGG | 0.405491 | 4.1:-78330830 | MS.gene73228:CDS |
| TCAACGGCAACAAAGTGAAA+TGG | 0.405989 | 4.1:+78328883 | None:intergenic |
| CAGTTCTAAGAAAACGGGTT+CGG | 0.406997 | 4.1:-78330876 | MS.gene73228:CDS |
| CAAGAGAAAGCTTTCAATGT+TGG | 0.410712 | 4.1:-78331415 | MS.gene73228:CDS |
| TGGTAAGGTTTATAACTTCT+CGG | 0.411590 | 4.1:+78329318 | None:intergenic |
| ATTGGTCTCGACTTGAGAAC+TGG | 0.413293 | 4.1:-78331384 | MS.gene73228:CDS |
| AAGTTTGTCTCTTCAAAGTC+AGG | 0.413851 | 4.1:-78330224 | MS.gene73228:CDS |
| GGATCTAATAACCTCTTAAG+AGG | 0.414021 | 4.1:+78330119 | None:intergenic |
| GAGGGAAGTTTGCTACTTTG+TGG | 0.414951 | 4.1:+78331187 | None:intergenic |
| TGTCTGTTCCATCTCAGATA+TGG | 0.417769 | 4.1:+78330931 | None:intergenic |
| AAATCATCCACCAGTGTTAG+TGG | 0.419968 | 4.1:-78331274 | MS.gene73228:CDS |
| CTTCATCGTTAATCCATAGA+TGG | 0.423295 | 4.1:-78329428 | MS.gene73228:CDS |
| TCCTGAATCTTCTAGGCGTT+GGG | 0.424320 | 4.1:-78330192 | MS.gene73228:CDS |
| CTCCTGAATCTTCTAGGCGT+TGG | 0.428185 | 4.1:-78330193 | MS.gene73228:CDS |
| TTTAACCATATGCTGTCTCT+TGG | 0.429134 | 4.1:+78329671 | None:intergenic |
| CTCGACCTATCCGCACTCTT+CGG | 0.429896 | 4.1:+78331619 | None:intergenic |
| CAAGATCAAGCCCTCTTAAG+AGG | 0.431000 | 4.1:-78330130 | MS.gene73228:CDS |
| TTGGCGGTCCTTGATCTGTC+TGG | 0.431959 | 4.1:+78329619 | None:intergenic |
| AGAAGCTGCTTGCTTTGAAA+AGG | 0.434192 | 4.1:-78330441 | MS.gene73228:CDS |
| CAGAAGGAAATGTTCGGAAC+CGG | 0.435575 | 4.1:-78331537 | MS.gene73228:CDS |
| ACAGGGGAAAGAGGTGGAAT+TGG | 0.439580 | 4.1:+78328663 | None:intergenic |
| GCACAGATTCGTCCAGTTTG+AGG | 0.440932 | 4.1:-78330031 | MS.gene73228:CDS |
| CCAGAAACAACCAGGTTCCT+TGG | 0.442985 | 4.1:-78328778 | MS.gene73228:CDS |
| CACACCGATACTCCTCAAAC+TGG | 0.446204 | 4.1:+78330019 | None:intergenic |
| ATTATGCGATTGTGGTGGTT+GGG | 0.446726 | 4.1:-78329394 | MS.gene73228:CDS |
| TCCATGGTCGGGATGAACTT+TGG | 0.446909 | 4.1:+78329600 | None:intergenic |
| ATTAAAAGAACTTCAGATGT+TGG | 0.447536 | 4.1:-78331088 | MS.gene73228:CDS |
| CAATATTACTTGGCTTGCTA+TGG | 0.449056 | 4.1:+78330783 | None:intergenic |
| AGTTCTAAGAAAACGGGTTC+GGG | 0.449744 | 4.1:-78330875 | MS.gene73228:CDS |
| TTAATCCATAGATGGAGAAC+CGG | 0.450697 | 4.1:-78329420 | MS.gene73228:CDS |
| TCTGACTACTTTCACCTGAA+TGG | 0.453420 | 4.1:+78330066 | None:intergenic |
| TCAAAAGGTGAATCAGTTGC+TGG | 0.453651 | 4.1:-78330837 | MS.gene73228:CDS |
| TCCAAAATAAACAAGATGTC+TGG | 0.456526 | 4.1:-78330473 | MS.gene73228:CDS |
| TCATTCAGTTCTAAGAAAAC+GGG | 0.456581 | 4.1:-78330881 | MS.gene73228:CDS |
| TGACTTTGAAGAGACAAACT+TGG | 0.458693 | 4.1:+78330226 | None:intergenic |
| ATTCCACCTCTTTCCCCTGT+TGG | 0.458904 | 4.1:-78328660 | MS.gene73228:CDS |
| CTATCCGCACTCTTCGGATT+CGG | 0.463761 | 4.1:+78331625 | None:intergenic |
| GATGAAGGTTCACCTCTGTT+TGG | 0.466821 | 4.1:+78329444 | None:intergenic |
| TTGCCAACGTAAACCTCCTC+TGG | 0.467221 | 4.1:+78330632 | None:intergenic |
| AGATCCTATACTGAAGCATA+AGG | 0.467514 | 4.1:-78330102 | MS.gene73228:CDS |
| GAACTAAATTGTGAAGCTGC+AGG | 0.481133 | 4.1:+78330248 | None:intergenic |
| CAGCAGCAAGCTCCATGGTC+GGG | 0.486385 | 4.1:+78329589 | None:intergenic |
| CAAATCAACCAGACAGATCA+AGG | 0.488665 | 4.1:-78329627 | MS.gene73228:CDS |
| CATCCACCAGTGTTAGTGGC+AGG | 0.491959 | 4.1:-78331270 | MS.gene73228:CDS |
| AGCTTCAGCTTAAGTCGAAT+CGG | 0.493820 | 4.1:-78330296 | MS.gene73228:CDS |
| TTCCCTGCCACTAACACTGG+TGG | 0.494216 | 4.1:+78331267 | None:intergenic |
| ATACTGAAGCATAAGGCATC+AGG | 0.494815 | 4.1:-78330095 | MS.gene73228:CDS |
| ATCATCTGAAGAACTTGAGT+CGG | 0.495856 | 4.1:+78330736 | None:intergenic |
| TAAAGCAGCACAATATTACT+TGG | 0.496475 | 4.1:+78330773 | None:intergenic |
| GGATAATTCAAGCAAAGAAA+AGG | 0.498701 | 4.1:-78330171 | MS.gene73228:CDS |
| GGATAGGAAGTGAGAAGATG+AGG | 0.500215 | 4.1:-78331120 | MS.gene73228:CDS |
| GATGCCTTATGCTTCAGTAT+AGG | 0.505162 | 4.1:+78330098 | None:intergenic |
| CTACTCATTTCCAAGGAACC+TGG | 0.506906 | 4.1:+78328768 | None:intergenic |
| TTCTCGGAATGTTTGAACTC+AGG | 0.509206 | 4.1:+78329334 | None:intergenic |
| AAACACATGTCTAATTTGCC+AGG | 0.511224 | 4.1:-78331472 | MS.gene73228:CDS |
| AACAACAGCAGAAGACTTCA+GGG | 0.512575 | 4.1:-78328708 | MS.gene73228:CDS |
| GAAATTTAGCATCGAACTCA+AGG | 0.514910 | 4.1:-78331066 | MS.gene73228:CDS |
| AGTTGAAAACGATCCTGGTA+AGG | 0.515550 | 4.1:+78329303 | None:intergenic |
| TTCTTCCAGGTGGTGTACAT+GGG | 0.515555 | 4.1:-78329470 | MS.gene73228:CDS |
| TTGTGATCTGCAAGAGACCT+TGG | 0.518732 | 4.1:+78329955 | None:intergenic |
| TCATCTGAAGAACTTGAGTC+GGG | 0.521685 | 4.1:+78330737 | None:intergenic |
| GAACTCCAAGAGACAGCATA+TGG | 0.521942 | 4.1:-78329676 | MS.gene73228:CDS |
| TGCTGAGCTGACTTCGCAGA+AGG | 0.523784 | 4.1:-78330348 | MS.gene73228:CDS |
| GATAATGATATTATGAAGAA+AGG | 0.524959 | 4.1:-78329516 | MS.gene73228:CDS |
| CGAAGAGTGCGGATAGGTCG+AGG | 0.525221 | 4.1:-78331618 | MS.gene73228:CDS |
| TCTCAAACAGAAGGCAAAGC+AGG | 0.526428 | 4.1:-78331563 | MS.gene73228:CDS |
| AGAAGGAAATGTTCGGAACC+GGG | 0.531429 | 4.1:-78331536 | MS.gene73228:CDS |
| GATTGTGGTGGTTGGGACAT+AGG | 0.533688 | 4.1:-78329387 | MS.gene73228:CDS |
| TCATAAGTCCATATCTGAGA+TGG | 0.534433 | 4.1:-78330939 | MS.gene73228:CDS |
| AGAATGCGAATCCAGTCAAA+AGG | 0.534610 | 4.1:-78330852 | MS.gene73228:CDS |
| CATCTATGGATTAACGATGA+AGG | 0.534839 | 4.1:+78329429 | None:intergenic |
| TGTTTGAGATCACTGCATTG+AGG | 0.536120 | 4.1:+78331577 | None:intergenic |
| CATGAGTGTAGAGACCCTTA+AGG | 0.537517 | 4.1:-78328745 | MS.gene73228:CDS |
| CGGTTTGAACCTTCTAGAAG+TGG | 0.538283 | 4.1:-78331151 | MS.gene73228:CDS |
| GCGAAGAGAAGTGGAAATGA+AGG | 0.539648 | 4.1:-78331508 | MS.gene73228:CDS |
| TGCTAAACTATTCTTGGTAG+CGG | 0.539736 | 4.1:+78329875 | None:intergenic |
| TCGTCCAGTTTGAGGAGTAT+CGG | 0.539957 | 4.1:-78330023 | MS.gene73228:CDS |
| TTCCCTCTGAGAATGTCAAA+CGG | 0.546337 | 4.1:-78331171 | MS.gene73228:CDS |
| CGGGAAACTGCGAAGAGAAG+TGG | 0.549836 | 4.1:-78331517 | MS.gene73228:CDS |
| TTCGGAATTCCAAACATCAT+CGG | 0.550049 | 4.1:-78330705 | MS.gene73228:CDS |
| AGAAGTGGATCCAAGAGGAT+AGG | 0.552006 | 4.1:-78331136 | MS.gene73228:CDS |
| ACTCTGCCAACAGGGGAAAG+AGG | 0.552468 | 4.1:+78328654 | None:intergenic |
| CACTGATTCAGTGAATTTGG+AGG | 0.552575 | 4.1:+78329704 | None:intergenic |
| CATCGAACTCAAGGCACCGC+AGG | 0.553778 | 4.1:-78331057 | MS.gene73228:CDS |
| TAATCCATAGATGGAGAACC+GGG | 0.557653 | 4.1:-78329419 | MS.gene73228:CDS |
| CTAAACCGACGGTTGTGAGA+TGG | 0.558674 | 4.1:+78330317 | None:intergenic |
| ACGTTTAAACTCTGCCAACA+GGG | 0.559891 | 4.1:+78328646 | None:intergenic |
| ATGGTCGGGATGAACTTTGG+CGG | 0.561832 | 4.1:+78329603 | None:intergenic |
| TTCGGACTTTGATGTAATTG+CGG | 0.562088 | 4.1:+78331643 | None:intergenic |
| AGTTCAAAGACAGCTAAAGA+AGG | 0.564381 | 4.1:-78331676 | MS.gene73228:CDS |
| CCAAATACCATATCTTCAGA+AGG | 0.564419 | 4.1:+78331736 | None:intergenic |
| GTCATATGTTTCTATTCCAG+AGG | 0.564694 | 4.1:-78330648 | MS.gene73228:CDS |
| TCTACTGTTATTCTTCCAGG+TGG | 0.565467 | 4.1:-78329480 | MS.gene73228:CDS |
| TCTCAGAAATTGAAGAAGAA+CGG | 0.566407 | 4.1:+78330504 | None:intergenic |
| TTGAGCACAAACTTAAACAA+AGG | 0.567029 | 4.1:+78329918 | None:intergenic |
| AACTAAATTGTGAAGCTGCA+GGG | 0.567980 | 4.1:+78330249 | None:intergenic |
| ATATGTTTCTATTCCAGAGG+AGG | 0.571785 | 4.1:-78330645 | MS.gene73228:CDS |
| GATGATTCGCCTCTACTGAA+TGG | 0.574870 | 4.1:+78331319 | None:intergenic |
| AAGGCAAAGCAGGATGCAGA+AGG | 0.576872 | 4.1:-78331553 | MS.gene73228:CDS |
| GAGAAGTTATAAACCTTACC+AGG | 0.578060 | 4.1:-78329316 | MS.gene73228:CDS |
| CGGTGTGAATGAATCACTGC+AGG | 0.580996 | 4.1:-78330003 | MS.gene73228:CDS |
| TCATTATGCAGTAGATAACC+TGG | 0.581839 | 4.1:+78331454 | None:intergenic |
| CTAGAAGATTCAGGAGTCAC+TGG | 0.582953 | 4.1:+78330200 | None:intergenic |
| TTAAGCTGCCAGAAACAACC+AGG | 0.587761 | 4.1:-78328786 | MS.gene73228:CDS |
| TCGAGGTCAAAGAGTAGTGT+TGG | 0.589460 | 4.1:-78331601 | MS.gene73228:CDS |
| ATGCAGTGATCTCAAACAGA+AGG | 0.593803 | 4.1:-78331572 | MS.gene73228:CDS |
| AGGATGCAGAAGGAAATGTT+CGG | 0.594208 | 4.1:-78331543 | MS.gene73228:CDS |
| ACAGCAGCAAGCTCCATGGT+CGG | 0.596519 | 4.1:+78329588 | None:intergenic |
| AACCGTTTGACATTCTCAGA+GGG | 0.598569 | 4.1:+78331169 | None:intergenic |
| ATCCACCAGTGTTAGTGGCA+GGG | 0.601571 | 4.1:-78331269 | MS.gene73228:CDS |
| GCTGAGCTGACTTCGCAGAA+GGG | 0.602620 | 4.1:-78330347 | MS.gene73228:CDS |
| CGTTTCACACCATTCAGTAG+AGG | 0.604174 | 4.1:-78331328 | MS.gene73228:CDS |
| GCCAAAGTTCATCCCGACCA+TGG | 0.607703 | 4.1:-78329601 | MS.gene73228:CDS |
| GATCTAATAACCTCTTAAGA+GGG | 0.611308 | 4.1:+78330120 | None:intergenic |
| ACTCATGCTACTCATTTCCA+AGG | 0.617071 | 4.1:+78328761 | None:intergenic |
| TCTACTGCATAATGATAGAG+TGG | 0.617688 | 4.1:-78331446 | MS.gene73228:CDS |
| ATTCCAGAGGAGGTTTACGT+TGG | 0.618088 | 4.1:-78330635 | MS.gene73228:CDS |
| ACCACAATCGCATAATCCCC+CGG | 0.618179 | 4.1:+78329401 | None:intergenic |
| AGCAAGGTATCATCAATCCA+AGG | 0.618319 | 4.1:-78329972 | MS.gene73228:CDS |
| AACAACAGCAGCAAGCTCCA+TGG | 0.623805 | 4.1:+78329584 | None:intergenic |
| CTGCCAACAGGGGAAAGAGG+TGG | 0.625772 | 4.1:+78328657 | None:intergenic |
| AAACATATGACAGACTACTT+CGG | 0.625938 | 4.1:+78330660 | None:intergenic |
| CTTGAGTCGGGAATATCATG+TGG | 0.628330 | 4.1:+78330749 | None:intergenic |
| CAAATCCATCTCACAACCGT+CGG | 0.629325 | 4.1:-78330322 | MS.gene73228:CDS |
| ATGATTGGAAAGGTTCGCAA+CGG | 0.629860 | 4.1:-78331237 | MS.gene73228:CDS |
| CGAATCCGAAGAGTGCGGAT+AGG | 0.632895 | 4.1:-78331624 | MS.gene73228:CDS |
| GAAGCTAAGCAGAAAATGGA+GGG | 0.635705 | 4.1:-78330998 | MS.gene73228:CDS |
| AGTGGTGGATGGATGAGTCA+CGG | 0.636917 | 4.1:-78329786 | MS.gene73228:CDS |
| GAGTAGAATCCATTATTCAA+CGG | 0.638175 | 4.1:+78328867 | None:intergenic |
| TGAAGCTAAGCAGAAAATGG+AGG | 0.642246 | 4.1:-78330999 | MS.gene73228:CDS |
| AAGTATGCTCAATCGCAGAA+CGG | 0.651591 | 4.1:+78330576 | None:intergenic |
| ATCCATAGATGGAGAACCGG+GGG | 0.654635 | 4.1:-78329417 | MS.gene73228:CDS |
| GGTGACCCATGTACACCACC+TGG | 0.655426 | 4.1:+78329465 | None:intergenic |
| GTTGCTTGAGTTTCCACACG+AGG | 0.656183 | 4.1:+78329554 | None:intergenic |
| AAACCGTTTGACATTCTCAG+AGG | 0.658195 | 4.1:+78331168 | None:intergenic |
| TCAAGCAACGAACAATTGCA+TGG | 0.659675 | 4.1:-78329540 | MS.gene73228:CDS |
| CGTTTAAACTCTGCCAACAG+GGG | 0.660756 | 4.1:+78328647 | None:intergenic |
| ACTGCAGGATGAAAAGAGCA+AGG | 0.666537 | 4.1:-78329988 | MS.gene73228:CDS |
| GAACAGAAGACGAGATCCTG+CGG | 0.678552 | 4.1:+78331041 | None:intergenic |
| AACGGCAACAAAGTGAAATG+GGG | 0.680624 | 4.1:+78328885 | None:intergenic |
| TTAAGCTGAAGCTAAACCGA+CGG | 0.682871 | 4.1:+78330306 | None:intergenic |
| ACGGATCAGACCGAATAACA+GGG | 0.686080 | 4.1:-78331218 | MS.gene73228:CDS |
| CTTCTAGAAGTGGATCCAAG+AGG | 0.703082 | 4.1:-78331141 | MS.gene73228:CDS |
| ACAACAGCAGAAGACTTCAG+GGG | 0.720766 | 4.1:-78328707 | MS.gene73228:CDS |
| AAGTCCGAATCCGAAGAGTG+CGG | 0.720839 | 4.1:-78331629 | MS.gene73228:CDS |
| GTACATGGGTCACCAAACAG+AGG | 0.726146 | 4.1:-78329456 | MS.gene73228:CDS |
| AATCCATAGATGGAGAACCG+GGG | 0.736635 | 4.1:-78329418 | MS.gene73228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAATTAAGAAAAAGAG+TGG | - | chr4.1:78330621-78330640 | MS.gene73228:CDS | 20.0% |
| !! | GATAATGATATTATGAAGAA+AGG | - | chr4.1:78330909-78330928 | MS.gene73228:CDS | 20.0% |
| !! | TAATCATAACCATATGTAAA+TGG | + | chr4.1:78331492-78331511 | None:intergenic | 20.0% |
| !! | TTATAAAAATAGCTATGCAT+AGG | - | chr4.1:78331358-78331377 | MS.gene73228:CDS | 20.0% |
| !!! | GTTAAAGAATATGTCTTATT+GGG | - | chr4.1:78330771-78330790 | MS.gene73228:CDS | 20.0% |
| !!! | TCATCATCTTTATTTTCATT+AGG | + | chr4.1:78329409-78329428 | None:intergenic | 20.0% |
| ! | AACAAGTCAAAAACAACTTA+TGG | + | chr4.1:78331264-78331283 | None:intergenic | 25.0% |
| ! | ACAGTAAAATCAAAAAGCAA+AGG | - | chr4.1:78329517-78329536 | MS.gene73228:CDS | 25.0% |
| ! | AGTAAAATCAAAAAGCAAAG+GGG | - | chr4.1:78329519-78329538 | MS.gene73228:CDS | 25.0% |
| ! | ATATGGTTATGATTACTTTC+AGG | - | chr4.1:78331497-78331516 | MS.gene73228:CDS | 25.0% |
| ! | ATTAAAAGAACTTCAGATGT+TGG | - | chr4.1:78329337-78329356 | MS.gene73228:CDS | 25.0% |
| ! | CAGTAAAATCAAAAAGCAAA+GGG | - | chr4.1:78329518-78329537 | MS.gene73228:CDS | 25.0% |
| ! | GGAAATAAAGAAAAAAGTTG+TGG | - | chr4.1:78330660-78330679 | MS.gene73228:CDS | 25.0% |
| ! | GGTTAAAGAATATGTCTTAT+TGG | - | chr4.1:78330770-78330789 | MS.gene73228:CDS | 25.0% |
| ! | GGTTTCATAAATTCATTACT+TGG | + | chr4.1:78328671-78328690 | None:intergenic | 25.0% |
| ! | TATAATTGTAGACTGTATTG+TGG | - | chr4.1:78331461-78331480 | MS.gene73228:CDS | 25.0% |
| ! | TTACTTGGTTGTATATTGAT+TGG | + | chr4.1:78328656-78328675 | None:intergenic | 25.0% |
| ! | TTGCAGATCACAATTAAAAA+TGG | - | chr4.1:78330480-78330499 | MS.gene73228:CDS | 25.0% |
| !! | GGAATTGGTGTATATTTTAT+AGG | + | chr4.1:78331750-78331769 | None:intergenic | 25.0% |
| !!! | AGAAGTTTCAGTTTTAAAGA+AGG | - | chr4.1:78330153-78330172 | MS.gene73228:CDS | 25.0% |
| !!! | TGCATAGCTATTTTTATAAC+AGG | + | chr4.1:78331357-78331376 | None:intergenic | 25.0% |
| AAAAGGATGTGTTAGACAAT+AGG | - | chr4.1:78330001-78330020 | MS.gene73228:CDS | 30.0% | |
| AAACATATGACAGACTACTT+CGG | + | chr4.1:78329768-78329787 | None:intergenic | 30.0% | |
| AAACCTTCTACATTCTACTT+GGG | - | chr4.1:78331159-78331178 | MS.gene73228:CDS | 30.0% | |
| GAAATTAAGAAAAAGAGTGG+TGG | - | chr4.1:78330624-78330643 | MS.gene73228:CDS | 30.0% | |
| GAGTAGAATCCATTATTCAA+CGG | + | chr4.1:78331561-78331580 | None:intergenic | 30.0% | |
| GATCTAATAACCTCTTAAGA+GGG | + | chr4.1:78330308-78330327 | None:intergenic | 30.0% | |
| GGATAATTCAAGCAAAGAAA+AGG | - | chr4.1:78330254-78330273 | MS.gene73228:CDS | 30.0% | |
| TAAACCTTCTACATTCTACT+TGG | - | chr4.1:78331158-78331177 | MS.gene73228:CDS | 30.0% | |
| TAAAGCAGCACAATATTACT+TGG | + | chr4.1:78329655-78329674 | None:intergenic | 30.0% | |
| TCCAAAATAAACAAGATGTC+TGG | - | chr4.1:78329952-78329971 | MS.gene73228:CDS | 30.0% | |
| TCTCAGAAATTGAAGAAGAA+CGG | + | chr4.1:78329924-78329943 | None:intergenic | 30.0% | |
| TGGTAAGGTTTATAACTTCT+CGG | + | chr4.1:78331110-78331129 | None:intergenic | 30.0% | |
| TTCAACAATCAGTCATTTAC+AGG | - | chr4.1:78331593-78331612 | MS.gene73228:CDS | 30.0% | |
| TTGAGCACAAACTTAAACAA+AGG | + | chr4.1:78330510-78330529 | None:intergenic | 30.0% | |
| ! | ATTGAGCATACTTCTTTTTC+TGG | - | chr4.1:78329859-78329878 | MS.gene73228:CDS | 30.0% |
| ! | CAAGTTCTTCAGATGATTTT+CGG | - | chr4.1:78329695-78329714 | MS.gene73228:CDS | 30.0% |
| ! | GAAAAACTTGATGATTGGAA+AGG | - | chr4.1:78329178-78329197 | MS.gene73228:intron | 30.0% |
| ! | GATTTCTCTCTATTTTCTTG+TGG | + | chr4.1:78329468-78329487 | None:intergenic | 30.0% |
| ! | GGTTTAGAATTCAAAAAGCT+CGG | - | chr4.1:78328710-78328729 | MS.gene73228:CDS | 30.0% |
| ! | TATGAAACCTTCTGAAGATA+TGG | - | chr4.1:78328682-78328701 | MS.gene73228:CDS | 30.0% |
| ! | TCGTTTTCAACTTTTTGTTC+AGG | - | chr4.1:78331133-78331152 | MS.gene73228:CDS | 30.0% |
| !! | ACCAGACATCTTGTTTATTT+TGG | + | chr4.1:78329956-78329975 | None:intergenic | 30.0% |
| !! | ATTCACTGATTCAGTGAATT+TGG | + | chr4.1:78330727-78330746 | None:intergenic | 30.0% |
| !! | CTCATTCAGTTCTAAGAAAA+CGG | - | chr4.1:78329543-78329562 | MS.gene73228:CDS | 30.0% |
| !! | TCAATGTTGGTGTTTTAGAT+TGG | - | chr4.1:78329023-78329042 | MS.gene73228:intron | 30.0% |
| !! | TCATTCAGTTCTAAGAAAAC+GGG | - | chr4.1:78329544-78329563 | MS.gene73228:CDS | 30.0% |
| !!! | GCTTTTTTGAGTTTATCTAC+TGG | - | chr4.1:78331196-78331215 | MS.gene73228:CDS | 30.0% |
| AACCTTCTACATTCTACTTG+GGG | - | chr4.1:78331160-78331179 | MS.gene73228:CDS | 35.0% | |
| AACTAAATTGTGAAGCTGCA+GGG | + | chr4.1:78330179-78330198 | None:intergenic | 35.0% | |
| AAGCACTTGTGAAACTAACT+GGG | - | chr4.1:78331222-78331241 | MS.gene73228:CDS | 35.0% | |
| AAGTCTTCTGCTGTTGTTAT+TGG | + | chr4.1:78331715-78331734 | None:intergenic | 35.0% | |
| AAGTTTGTCTCTTCAAAGTC+AGG | - | chr4.1:78330201-78330220 | MS.gene73228:CDS | 35.0% | |
| ACTTTGTTGCCGTTGAATAA+TGG | - | chr4.1:78331549-78331568 | MS.gene73228:CDS | 35.0% | |
| AGATCCTATACTGAAGCATA+AGG | - | chr4.1:78330323-78330342 | MS.gene73228:CDS | 35.0% | |
| AGTTCAAAGACAGCTAAAGA+AGG | - | chr4.1:78328749-78328768 | MS.gene73228:CDS | 35.0% | |
| AGTTCTACTGTTATTCTTCC+AGG | - | chr4.1:78330942-78330961 | MS.gene73228:CDS | 35.0% | |
| ATCATCTGAAGAACTTGAGT+CGG | + | chr4.1:78329692-78329711 | None:intergenic | 35.0% | |
| ATGTCATCATGCACTTTGTT+TGG | + | chr4.1:78331434-78331453 | None:intergenic | 35.0% | |
| ATTGGAACTTGGTTCCTTAA+GGG | + | chr4.1:78331697-78331716 | None:intergenic | 35.0% | |
| CAAAAAGTTGAAAACGATCC+TGG | + | chr4.1:78331130-78331149 | None:intergenic | 35.0% | |
| CAAGAGAAAGCTTTCAATGT+TGG | - | chr4.1:78329010-78329029 | MS.gene73228:intron | 35.0% | |
| CCAAATACCATATCTTCAGA+AGG | + | chr4.1:78328692-78328711 | None:intergenic | 35.0% | |
| CTTCATCGTTAATCCATAGA+TGG | - | chr4.1:78330997-78331016 | MS.gene73228:CDS | 35.0% | |
| GAGAAGTTATAAACCTTACC+AGG | - | chr4.1:78331109-78331128 | MS.gene73228:CDS | 35.0% | |
| GCACATGAGAAGAATGATTT+AGG | - | chr4.1:78330573-78330592 | MS.gene73228:CDS | 35.0% | |
| GGATCTAATAACCTCTTAAG+AGG | + | chr4.1:78330309-78330328 | None:intergenic | 35.0% | |
| GGTTATGATTACTTTCAGGA+AGG | - | chr4.1:78331501-78331520 | MS.gene73228:CDS | 35.0% | |
| GTGGATACTCCATTTACATA+TGG | - | chr4.1:78331480-78331499 | MS.gene73228:CDS | 35.0% | |
| TAAGCACTTGTGAAACTAAC+TGG | - | chr4.1:78331221-78331240 | MS.gene73228:CDS | 35.0% | |
| TATTGGAACTTGGTTCCTTA+AGG | + | chr4.1:78331698-78331717 | None:intergenic | 35.0% | |
| TCATAAGTCCATATCTGAGA+TGG | - | chr4.1:78329486-78329505 | MS.gene73228:CDS | 35.0% | |
| TCATTATGCAGTAGATAACC+TGG | + | chr4.1:78328974-78328993 | None:intergenic | 35.0% | |
| TCTACTGCATAATGATAGAG+TGG | - | chr4.1:78328979-78328998 | MS.gene73228:intron | 35.0% | |
| TGATGAAGCTAAGCAGAAAA+TGG | - | chr4.1:78329423-78329442 | MS.gene73228:CDS | 35.0% | |
| TGCTAAACTATTCTTGGTAG+CGG | + | chr4.1:78330553-78330572 | None:intergenic | 35.0% | |
| TTAATCCATAGATGGAGAAC+CGG | - | chr4.1:78331005-78331024 | MS.gene73228:CDS | 35.0% | |
| TTCGGAATTCCAAACATCAT+CGG | - | chr4.1:78329720-78329739 | MS.gene73228:CDS | 35.0% | |
| TTCGGACTTTGATGTAATTG+CGG | + | chr4.1:78328785-78328804 | None:intergenic | 35.0% | |
| TTTAACCATATGCTGTCTCT+TGG | + | chr4.1:78330757-78330776 | None:intergenic | 35.0% | |
| ! | AAACACATGTCTAATTTGCC+AGG | - | chr4.1:78328953-78328972 | MS.gene73228:intron | 35.0% |
| ! | AAACGACTAGTTAGATCTTC+TGG | + | chr4.1:78329082-78329101 | None:intergenic | 35.0% |
| ! | ATATGTTTCTATTCCAGAGG+AGG | - | chr4.1:78329780-78329799 | MS.gene73228:CDS | 35.0% |
| ! | ATGTGCTGCTAAACTATTCT+TGG | + | chr4.1:78330559-78330578 | None:intergenic | 35.0% |
| ! | CATCTATGGATTAACGATGA+AGG | + | chr4.1:78330999-78331018 | None:intergenic | 35.0% |
| ! | CCTTCTGAAGATATGGTATT+TGG | - | chr4.1:78328689-78328708 | MS.gene73228:CDS | 35.0% |
| ! | GAAATTTAGCATCGAACTCA+AGG | - | chr4.1:78329359-78329378 | MS.gene73228:CDS | 35.0% |
| ! | GATTTTCATCCGATGATGTT+TGG | + | chr4.1:78329732-78329751 | None:intergenic | 35.0% |
| ! | GTCATATGTTTCTATTCCAG+AGG | - | chr4.1:78329777-78329796 | MS.gene73228:CDS | 35.0% |
| ! | TGACTTTGAAGAGACAAACT+TGG | + | chr4.1:78330202-78330221 | None:intergenic | 35.0% |
| ! | TTAAGAAAAAGAGTGGTGGA+TGG | - | chr4.1:78330628-78330647 | MS.gene73228:CDS | 35.0% |
| ! | TTCAGATGATTTTCGGCTTT+CGG | - | chr4.1:78329702-78329721 | MS.gene73228:CDS | 35.0% |
| !! | CAATATTACTTGGCTTGCTA+TGG | + | chr4.1:78329645-78329664 | None:intergenic | 35.0% |
| !!! | ACTGGTGGATGATTTTGATT+TGG | + | chr4.1:78329146-78329165 | None:intergenic | 35.0% |
| AAACCGTTTGACATTCTCAG+AGG | + | chr4.1:78329260-78329279 | None:intergenic | 40.0% | |
| AAATCATCCACCAGTGTTAG+TGG | - | chr4.1:78329151-78329170 | MS.gene73228:intron | 40.0% | |
| AACAACAGCAGAAGACTTCA+GGG | - | chr4.1:78331717-78331736 | MS.gene73228:CDS | 40.0% | |
| AACCGTTTGACATTCTCAGA+GGG | + | chr4.1:78329259-78329278 | None:intergenic | 40.0% | |
| AACGGCAACAAAGTGAAATG+GGG | + | chr4.1:78331543-78331562 | None:intergenic | 40.0% | |
| AAGTATGCTCAATCGCAGAA+CGG | + | chr4.1:78329852-78329871 | None:intergenic | 40.0% | |
| ACTCATGCTACTCATTTCCA+AGG | + | chr4.1:78331667-78331686 | None:intergenic | 40.0% | |
| AGAATGCGAATCCAGTCAAA+AGG | - | chr4.1:78329573-78329592 | MS.gene73228:CDS | 40.0% | |
| AGCTTCAGCTTAAGTCGAAT+CGG | - | chr4.1:78330129-78330148 | MS.gene73228:CDS | 40.0% | |
| AGGATGCAGAAGGAAATGTT+CGG | - | chr4.1:78328882-78328901 | MS.gene73228:CDS | 40.0% | |
| AGTTGAAAACGATCCTGGTA+AGG | + | chr4.1:78331125-78331144 | None:intergenic | 40.0% | |
| ATGATTGGAAAGGTTCGCAA+CGG | - | chr4.1:78329188-78329207 | MS.gene73228:intron | 40.0% | |
| ATGCAGTGATCTCAAACAGA+AGG | - | chr4.1:78328853-78328872 | MS.gene73228:CDS | 40.0% | |
| ATTATGCGATTGTGGTGGTT+GGG | - | chr4.1:78331031-78331050 | MS.gene73228:CDS | 40.0% | |
| CAAAGTGCATGATGACATTG+TGG | - | chr4.1:78331436-78331455 | MS.gene73228:CDS | 40.0% | |
| CAAATCAACCAGACAGATCA+AGG | - | chr4.1:78330798-78330817 | MS.gene73228:CDS | 40.0% | |
| CAACGGCAACAAAGTGAAAT+GGG | + | chr4.1:78331544-78331563 | None:intergenic | 40.0% | |
| GAACTAAATTGTGAAGCTGC+AGG | + | chr4.1:78330180-78330199 | None:intergenic | 40.0% | |
| GAAGCTAAGCAGAAAATGGA+GGG | - | chr4.1:78329427-78329446 | MS.gene73228:CDS | 40.0% | |
| GATGCCTTATGCTTCAGTAT+AGG | + | chr4.1:78330330-78330349 | None:intergenic | 40.0% | |
| TAACAACAGCAGAAGACTTC+AGG | - | chr4.1:78331716-78331735 | MS.gene73228:CDS | 40.0% | |
| TAATCCATAGATGGAGAACC+GGG | - | chr4.1:78331006-78331025 | MS.gene73228:CDS | 40.0% | |
| TCAAAAAGCTCGGCTCAAAA+CGG | - | chr4.1:78328720-78328739 | MS.gene73228:CDS | 40.0% | |
| TCAAAAGGTGAATCAGTTGC+TGG | - | chr4.1:78329588-78329607 | MS.gene73228:CDS | 40.0% | |
| TCAACGGCAACAAAGTGAAA+TGG | + | chr4.1:78331545-78331564 | None:intergenic | 40.0% | |
| TCAAGCAACGAACAATTGCA+TGG | - | chr4.1:78330885-78330904 | MS.gene73228:CDS | 40.0% | |
| TCATCTGAAGAACTTGAGTC+GGG | + | chr4.1:78329691-78329710 | None:intergenic | 40.0% | |
| TCTACTGTTATTCTTCCAGG+TGG | - | chr4.1:78330945-78330964 | MS.gene73228:CDS | 40.0% | |
| TCTGACTACTTTCACCTGAA+TGG | + | chr4.1:78330362-78330381 | None:intergenic | 40.0% | |
| TGAAGCTAAGCAGAAAATGG+AGG | - | chr4.1:78329426-78329445 | MS.gene73228:CDS | 40.0% | |
| TGTCTGTTCCATCTCAGATA+TGG | + | chr4.1:78329497-78329516 | None:intergenic | 40.0% | |
| TTAAGCTGAAGCTAAACCGA+CGG | + | chr4.1:78330122-78330141 | None:intergenic | 40.0% | |
| TTCTCGGAATGTTTGAACTC+AGG | + | chr4.1:78331094-78331113 | None:intergenic | 40.0% | |
| ! | AGCAAGGTATCATCAATCCA+AGG | - | chr4.1:78330453-78330472 | MS.gene73228:CDS | 40.0% |
| ! | ATACTGAAGCATAAGGCATC+AGG | - | chr4.1:78330330-78330349 | MS.gene73228:CDS | 40.0% |
| ! | CGACTTGAAAGTGCAATTTC+AGG | + | chr4.1:78329826-78329845 | None:intergenic | 40.0% |
| ! | CTGCTGTTGTTATTGGAACT+TGG | + | chr4.1:78331708-78331727 | None:intergenic | 40.0% |
| ! | GCAGGGAAAAACTTGATGAT+TGG | - | chr4.1:78329173-78329192 | MS.gene73228:intron | 40.0% |
| ! | TGTTTGAGATCACTGCATTG+AGG | + | chr4.1:78328851-78328870 | None:intergenic | 40.0% |
| ! | TTCCCTCTGAGAATGTCAAA+CGG | - | chr4.1:78329254-78329273 | MS.gene73228:intron | 40.0% |
| !! | AGAAGCTGCTTGCTTTGAAA+AGG | - | chr4.1:78329984-78330003 | MS.gene73228:CDS | 40.0% |
| !! | AGTTCTAAGAAAACGGGTTC+GGG | - | chr4.1:78329550-78329569 | MS.gene73228:CDS | 40.0% |
| !! | CAACTGATTCACCTTTTGAC+TGG | + | chr4.1:78329587-78329606 | None:intergenic | 40.0% |
| !! | CACTGATTCAGTGAATTTGG+AGG | + | chr4.1:78330724-78330743 | None:intergenic | 40.0% |
| !! | CAGTTCTAAGAAAACGGGTT+CGG | - | chr4.1:78329549-78329568 | MS.gene73228:CDS | 40.0% |
| !! | GCTTGCTATGGCTATGTTTA+TGG | + | chr4.1:78329633-78329652 | None:intergenic | 40.0% |
| !!! | GGTGGATGATTTTGATTTGG+TGG | + | chr4.1:78329143-78329162 | None:intergenic | 40.0% |
| AACGGATCAGACCGAATAAC+AGG | - | chr4.1:78329206-78329225 | MS.gene73228:intron | 45.0% | |
| AAGTCAGCTCAGCAGTTTCT+TGG | + | chr4.1:78330071-78330090 | None:intergenic | 45.0% | |
| AATCCATAGATGGAGAACCG+GGG | - | chr4.1:78331007-78331026 | MS.gene73228:CDS | 45.0% | |
| ACAACAGCAGAAGACTTCAG+GGG | - | chr4.1:78331718-78331737 | MS.gene73228:CDS | 45.0% | |
| ACGGATCAGACCGAATAACA+GGG | - | chr4.1:78329207-78329226 | MS.gene73228:intron | 45.0% | |
| ACTGCAGGATGAAAAGAGCA+AGG | - | chr4.1:78330437-78330456 | MS.gene73228:CDS | 45.0% | |
| AGAAGGAAATGTTCGGAACC+GGG | - | chr4.1:78328889-78328908 | MS.gene73228:CDS | 45.0% | |
| AGAAGTGGATCCAAGAGGAT+AGG | - | chr4.1:78329289-78329308 | MS.gene73228:intron | 45.0% | |
| AGCCCCAAGTAGAATGTAGA+AGG | + | chr4.1:78331165-78331184 | None:intergenic | 45.0% | |
| ATTCCAGAGGAGGTTTACGT+TGG | - | chr4.1:78329790-78329809 | MS.gene73228:CDS | 45.0% | |
| ATTCTTCCAGGTGGTGTACA+TGG | - | chr4.1:78330954-78330973 | MS.gene73228:CDS | 45.0% | |
| CAAATCCATCTCACAACCGT+CGG | - | chr4.1:78330103-78330122 | MS.gene73228:CDS | 45.0% | |
| CAAGATCAAGCCCTCTTAAG+AGG | - | chr4.1:78330295-78330314 | MS.gene73228:CDS | 45.0% | |
| CAGAAGGAAATGTTCGGAAC+CGG | - | chr4.1:78328888-78328907 | MS.gene73228:CDS | 45.0% | |
| CAGTGACTCCTGAATCTTCT+AGG | - | chr4.1:78330226-78330245 | MS.gene73228:CDS | 45.0% | |
| CATGAGTGTAGAGACCCTTA+AGG | - | chr4.1:78331680-78331699 | MS.gene73228:CDS | 45.0% | |
| CGTTTCACACCATTCAGTAG+AGG | - | chr4.1:78329097-78329116 | MS.gene73228:intron | 45.0% | |
| CTACTCATTTCCAAGGAACC+TGG | + | chr4.1:78331660-78331679 | None:intergenic | 45.0% | |
| CTAGAAGATTCAGGAGTCAC+TGG | + | chr4.1:78330228-78330247 | None:intergenic | 45.0% | |
| CTCTTGGATCCACTTCTAGA+AGG | + | chr4.1:78329286-78329305 | None:intergenic | 45.0% | |
| CTTCTCACTTCCTATCCTCT+TGG | + | chr4.1:78329302-78329321 | None:intergenic | 45.0% | |
| CTTGAGTCGGGAATATCATG+TGG | + | chr4.1:78329679-78329698 | None:intergenic | 45.0% | |
| GAACTCCAAGAGACAGCATA+TGG | - | chr4.1:78330749-78330768 | MS.gene73228:CDS | 45.0% | |
| GATGAAGGTTCACCTCTGTT+TGG | + | chr4.1:78330984-78331003 | None:intergenic | 45.0% | |
| GATGATTCGCCTCTACTGAA+TGG | + | chr4.1:78329109-78329128 | None:intergenic | 45.0% | |
| GATTATGCGATTGTGGTGGT+TGG | - | chr4.1:78331030-78331049 | MS.gene73228:CDS | 45.0% | |
| GCGAAGAGAAGTGGAAATGA+AGG | - | chr4.1:78328917-78328936 | MS.gene73228:intron | 45.0% | |
| GGATAGGAAGTGAGAAGATG+AGG | - | chr4.1:78329305-78329324 | MS.gene73228:CDS | 45.0% | |
| TCCTGAATCTTCTAGGCGTT+GGG | - | chr4.1:78330233-78330252 | MS.gene73228:CDS | 45.0% | |
| TCGAGGTCAAAGAGTAGTGT+TGG | - | chr4.1:78328824-78328843 | MS.gene73228:CDS | 45.0% | |
| TCTCAAACAGAAGGCAAAGC+AGG | - | chr4.1:78328862-78328881 | MS.gene73228:CDS | 45.0% | |
| TTAAGCTGCCAGAAACAACC+AGG | - | chr4.1:78331639-78331658 | MS.gene73228:CDS | 45.0% | |
| TTCTTCCAGGTGGTGTACAT+GGG | - | chr4.1:78330955-78330974 | MS.gene73228:CDS | 45.0% | |
| TTGTGATCTGCAAGAGACCT+TGG | + | chr4.1:78330473-78330492 | None:intergenic | 45.0% | |
| ! | AGACTACTTCGGCTTGATTC+TGG | + | chr4.1:78329757-78329776 | None:intergenic | 45.0% |
| ! | ATTGGTCTCGACTTGAGAAC+TGG | - | chr4.1:78329041-78329060 | MS.gene73228:intron | 45.0% |
| ! | CGGTTTGAACCTTCTAGAAG+TGG | - | chr4.1:78329274-78329293 | MS.gene73228:intron | 45.0% |
| ! | CTTCTAGAAGTGGATCCAAG+AGG | - | chr4.1:78329284-78329303 | MS.gene73228:intron | 45.0% |
| ! | GGAAGTGCATCCCTGTTATT+CGG | + | chr4.1:78329220-78329239 | None:intergenic | 45.0% |
| ! | TACTTGGGGCTTGTTTCGAT+TGG | - | chr4.1:78331174-78331193 | MS.gene73228:CDS | 45.0% |
| ! | TCGTCCAGTTTGAGGAGTAT+CGG | - | chr4.1:78330402-78330421 | MS.gene73228:CDS | 45.0% |
| ! | TTTTTCCCTGCCACTAACAC+TGG | + | chr4.1:78329164-78329183 | None:intergenic | 45.0% |
| !! | GAGGGAAGTTTGCTACTTTG+TGG | + | chr4.1:78329241-78329260 | None:intergenic | 45.0% |
| !!! | GTTGTTTTTGAGACCTCGTG+TGG | - | chr4.1:78330858-78330877 | MS.gene73228:CDS | 45.0% |
| AACAACAGCAGCAAGCTCCA+TGG | + | chr4.1:78330844-78330863 | None:intergenic | 50.0% | |
| AAGGCAAAGCAGGATGCAGA+AGG | - | chr4.1:78328872-78328891 | MS.gene73228:CDS | 50.0% | |
| AAGTCCGAATCCGAAGAGTG+CGG | - | chr4.1:78328796-78328815 | MS.gene73228:CDS | 50.0% | |
| ACAGGGGAAAGAGGTGGAAT+TGG | + | chr4.1:78331765-78331784 | None:intergenic | 50.0% | |
| ACCACAATCGCATAATCCCC+CGG | + | chr4.1:78331027-78331046 | None:intergenic | 50.0% | |
| ATCCACCAGTGTTAGTGGCA+GGG | - | chr4.1:78329156-78329175 | MS.gene73228:intron | 50.0% | |
| ATCCATAGATGGAGAACCGG+GGG | - | chr4.1:78331008-78331027 | MS.gene73228:CDS | 50.0% | |
| ATGGTCGGGATGAACTTTGG+CGG | + | chr4.1:78330825-78330844 | None:intergenic | 50.0% | |
| ATTCCACCTCTTTCCCCTGT+TGG | - | chr4.1:78331765-78331784 | MS.gene73228:CDS | 50.0% | |
| CACACCGATACTCCTCAAAC+TGG | + | chr4.1:78330409-78330428 | None:intergenic | 50.0% | |
| CACTTCTCTTCGCAGTTTCC+CGG | + | chr4.1:78328910-78328929 | None:intergenic | 50.0% | |
| CCAGAAACAACCAGGTTCCT+TGG | - | chr4.1:78331647-78331666 | MS.gene73228:CDS | 50.0% | |
| CGGTGTGAATGAATCACTGC+AGG | - | chr4.1:78330422-78330441 | MS.gene73228:CDS | 50.0% | |
| CTAAACCGACGGTTGTGAGA+TGG | + | chr4.1:78330111-78330130 | None:intergenic | 50.0% | |
| CTATCCGCACTCTTCGGATT+CGG | + | chr4.1:78328803-78328822 | None:intergenic | 50.0% | |
| CTCCTGAATCTTCTAGGCGT+TGG | - | chr4.1:78330232-78330251 | MS.gene73228:CDS | 50.0% | |
| GAACAGAAGACGAGATCCTG+CGG | + | chr4.1:78329387-78329406 | None:intergenic | 50.0% | |
| GATTGTGGTGGTTGGGACAT+AGG | - | chr4.1:78331038-78331057 | MS.gene73228:CDS | 50.0% | |
| GCACAGATTCGTCCAGTTTG+AGG | - | chr4.1:78330394-78330413 | MS.gene73228:CDS | 50.0% | |
| GTACATGGGTCACCAAACAG+AGG | - | chr4.1:78330969-78330988 | MS.gene73228:CDS | 50.0% | |
| GTGAATCAGTTGCTGGAGTC+AGG | - | chr4.1:78329595-78329614 | MS.gene73228:CDS | 50.0% | |
| GTTGCTTGAGTTTCCACACG+AGG | + | chr4.1:78330874-78330893 | None:intergenic | 50.0% | |
| TCCATGGTCGGGATGAACTT+TGG | + | chr4.1:78330828-78330847 | None:intergenic | 50.0% | |
| TCCCAACGCCTAGAAGATTC+AGG | + | chr4.1:78330237-78330256 | None:intergenic | 50.0% | |
| TTGCCAACGTAAACCTCCTC+TGG | + | chr4.1:78329796-78329815 | None:intergenic | 50.0% | |
| ! | CCAAGGAACCTGGTTGTTTC+TGG | + | chr4.1:78331650-78331669 | None:intergenic | 50.0% |
| !! | AGTGGTGGATGGATGAGTCA+CGG | - | chr4.1:78330639-78330658 | MS.gene73228:CDS | 50.0% |
| ACAGCAGCAAGCTCCATGGT+CGG | + | chr4.1:78330840-78330859 | None:intergenic | 55.0% | |
| ACCGGGGGATTATGCGATTG+TGG | - | chr4.1:78331023-78331042 | MS.gene73228:CDS | 55.0% | |
| ACTCTGCCAACAGGGGAAAG+AGG | + | chr4.1:78331774-78331793 | None:intergenic | 55.0% | |
| ATCCCCCGGTTCTCCATCTA+TGG | + | chr4.1:78331013-78331032 | None:intergenic | 55.0% | |
| CATCCACCAGTGTTAGTGGC+AGG | - | chr4.1:78329155-78329174 | MS.gene73228:intron | 55.0% | |
| CGGGAAACTGCGAAGAGAAG+TGG | - | chr4.1:78328908-78328927 | MS.gene73228:CDS | 55.0% | |
| CTCGACCTATCCGCACTCTT+CGG | + | chr4.1:78328809-78328828 | None:intergenic | 55.0% | |
| GCCAAAGTTCATCCCGACCA+TGG | - | chr4.1:78330824-78330843 | MS.gene73228:CDS | 55.0% | |
| GGGGGATTATGCGATTGTGG+TGG | - | chr4.1:78331026-78331045 | MS.gene73228:CDS | 55.0% | |
| TTCCCTGCCACTAACACTGG+TGG | + | chr4.1:78329161-78329180 | None:intergenic | 55.0% | |
| TTGGCGGTCCTTGATCTGTC+TGG | + | chr4.1:78330809-78330828 | None:intergenic | 55.0% | |
| ! | CGAATCCGAAGAGTGCGGAT+AGG | - | chr4.1:78328801-78328820 | MS.gene73228:CDS | 55.0% |
| ! | GCTGAGCTGACTTCGCAGAA+GGG | - | chr4.1:78330078-78330097 | MS.gene73228:CDS | 55.0% |
| ! | TGCTGAGCTGACTTCGCAGA+AGG | - | chr4.1:78330077-78330096 | MS.gene73228:CDS | 55.0% |
| CAGCAGCAAGCTCCATGGTC+GGG | + | chr4.1:78330839-78330858 | None:intergenic | 60.0% | |
| CTGCCAACAGGGGAAAGAGG+TGG | + | chr4.1:78331771-78331790 | None:intergenic | 60.0% | |
| GCATCAGGCACGCACCATTC+AGG | - | chr4.1:78330345-78330364 | MS.gene73228:CDS | 60.0% | |
| GGTGACCCATGTACACCACC+TGG | + | chr4.1:78330963-78330982 | None:intergenic | 60.0% | |
| ! | CGAAGAGTGCGGATAGGTCG+AGG | - | chr4.1:78328807-78328826 | MS.gene73228:CDS | 60.0% |
| !! | CATCGAACTCAAGGCACCGC+AGG | - | chr4.1:78329368-78329387 | MS.gene73228:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 78328650 | 78331797 | 78328650 | ID=MS.gene73228 |
| chr4.1 | mRNA | 78328650 | 78331797 | 78328650 | ID=MS.gene73228.t1;Parent=MS.gene73228 |
| chr4.1 | exon | 78329293 | 78331797 | 78329293 | ID=MS.gene73228.t1.exon1;Parent=MS.gene73228.t1 |
| chr4.1 | CDS | 78329293 | 78331797 | 78329293 | ID=cds.MS.gene73228.t1;Parent=MS.gene73228.t1 |
| chr4.1 | exon | 78328650 | 78328928 | 78328650 | ID=MS.gene73228.t1.exon2;Parent=MS.gene73228.t1 |
| chr4.1 | CDS | 78328650 | 78328928 | 78328650 | ID=cds.MS.gene73228.t1;Parent=MS.gene73228.t1 |
| Gene Sequence |
| Protein sequence |
