Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74510.t1 | XP_013442808.1 | 93.4 | 182 | 12 | 0 | 1 | 182 | 12 | 193 | 8.00E-61 | 243.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74510.t1 | Q9LXD1 | 52.7 | 182 | 71 | 3 | 1 | 182 | 14 | 180 | 3.5e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74510.t1 | A0A072TIW3 | 93.4 | 182 | 12 | 0 | 1 | 182 | 12 | 193 | 5.8e-61 | 243.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene74510 | 0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene74510 | 0.813444 | 2.55E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene74510 | 0.85218 | 5.47E-61 | -1.69E-46 |
| MS.gene049499 | MS.gene74510 | 0.817482 | 3.22E-52 | -1.69E-46 |
| MS.gene049786 | MS.gene74510 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene049801 | MS.gene74510 | 0.807006 | 6.24E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene74510 | 0.851572 | 8.13E-61 | -1.69E-46 |
| MS.gene050654 | MS.gene74510 | 0.808647 | 2.80E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene74510 | 0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene74510 | 0.8139 | 2.03E-51 | -1.69E-46 |
| MS.gene051184 | MS.gene74510 | 0.830649 | 2.61E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene74510 | 0.829377 | 5.33E-55 | -1.69E-46 |
| MS.gene051655 | MS.gene74510 | 0.810601 | 1.06E-50 | -1.69E-46 |
| MS.gene051831 | MS.gene74510 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene74510 | 0.811805 | 5.83E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene74510 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene74510 | 0.814724 | 1.33E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene74510 | 0.808167 | 3.54E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene74510 | 0.807364 | 5.24E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene74510 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene74510 | 0.809961 | 1.46E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene74510 | 0.836586 | 8.58E-57 | -1.69E-46 |
| MS.gene054893 | MS.gene74510 | 0.841299 | 5.17E-58 | -1.69E-46 |
| MS.gene055864 | MS.gene74510 | 0.814925 | 1.20E-51 | -1.69E-46 |
| MS.gene05624 | MS.gene74510 | 0.804042 | 2.61E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene74510 | 0.815691 | 8.12E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene74510 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene74510 | 0.812057 | 5.13E-51 | -1.69E-46 |
| MS.gene058095 | MS.gene74510 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene74510 | 0.817516 | 3.17E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene74510 | 0.850249 | 1.92E-60 | -1.69E-46 |
| MS.gene058592 | MS.gene74510 | 0.83395 | 3.97E-56 | -1.69E-46 |
| MS.gene05878 | MS.gene74510 | 0.81398 | 1.94E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene74510 | 0.828022 | 1.13E-54 | -1.69E-46 |
| MS.gene05952 | MS.gene74510 | 0.832679 | 8.24E-56 | -1.69E-46 |
| MS.gene05956 | MS.gene74510 | 0.814238 | 1.71E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene74510 | 0.806757 | 7.05E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene74510 | 0.806812 | 6.86E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene74510 | 0.821013 | 5.06E-53 | -1.69E-46 |
| MS.gene060850 | MS.gene74510 | 0.803065 | 4.16E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene74510 | 0.813797 | 2.13E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene74510 | 0.81375 | 2.19E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene74510 | 0.828281 | 9.81E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene74510 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene74510 | 0.806686 | 7.29E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74510.t1 | MTR_0085s0010 | 95.055 | 182 | 9 | 0 | 1 | 182 | 12 | 193 | 1.64e-117 | 332 |
| MS.gene74510.t1 | MTR_3g092095 | 43.860 | 57 | 32 | 0 | 126 | 182 | 3 | 59 | 5.88e-12 | 60.5 |
| MS.gene74510.t1 | MTR_7g117990 | 36.842 | 57 | 36 | 0 | 126 | 182 | 4 | 60 | 6.42e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74510.t1 | AT5G09680 | 58.791 | 182 | 60 | 4 | 1 | 182 | 14 | 180 | 2.92e-66 | 202 |
| MS.gene74510.t1 | AT5G09680 | 58.791 | 182 | 60 | 4 | 1 | 182 | 14 | 180 | 2.92e-66 | 202 |
| MS.gene74510.t1 | AT5G09680 | 58.791 | 182 | 60 | 4 | 1 | 182 | 60 | 226 | 9.85e-66 | 202 |
| MS.gene74510.t1 | AT5G53560 | 40.351 | 57 | 34 | 0 | 126 | 182 | 3 | 59 | 2.93e-12 | 61.2 |
| MS.gene74510.t1 | AT1G26340 | 44.444 | 54 | 30 | 0 | 129 | 182 | 6 | 59 | 2.55e-11 | 58.9 |
Find 35 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGGATTCTTCCTTTA+TGG | 0.134703 | 4.1:+58999917 | None:intergenic |
| ACAATAATGGTGGTATCTTA+TGG | 0.283733 | 4.1:-58999878 | MS.gene74510:CDS |
| GTTACTACTGCTTGCATTTG+AGG | 0.317183 | 4.1:+58999902 | None:intergenic |
| TGATTCTTCAAACTCTAAAA+AGG | 0.332088 | 4.1:-58999838 | MS.gene74510:CDS |
| CCAGGGTGAAACGTCATATA+TGG | 0.357413 | 4.1:+58998098 | None:intergenic |
| CGAACTCATCCTGACCTTGC+AGG | 0.392085 | 4.1:-58999633 | MS.gene74510:intron |
| GAACAGGAGACTAATTTCTA+TGG | 0.394765 | 4.1:-58998192 | MS.gene74510:CDS |
| GTCTAAAAGGACAGTCGAAC+AGG | 0.400231 | 4.1:-58998208 | MS.gene74510:CDS |
| TATGTTGATCCAGGTCTAAA+AGG | 0.419525 | 4.1:-58998221 | MS.gene74510:intron |
| AGCAGTAGTAACAACAATAA+TGG | 0.427293 | 4.1:-58999891 | MS.gene74510:CDS |
| TGAAAAGGGTTATAGTCAAA+TGG | 0.427823 | 4.1:-58999673 | MS.gene74510:CDS |
| AATCGCGGATATTTCCATAA+AGG | 0.455333 | 4.1:-58999931 | MS.gene74510:CDS |
| ATAACAGCACCTGCAAGGTC+AGG | 0.484107 | 4.1:+58999624 | None:intergenic |
| CGAATCCTTAGCATCACTCT+TGG | 0.489419 | 4.1:+58999761 | None:intergenic |
| AGCTTGTTTGTTTCCACCGC+AGG | 0.499500 | 4.1:+58999963 | None:intergenic |
| GGAACTTTGGCCCGAACCGT+TGG | 0.513323 | 4.1:+58999699 | None:intergenic |
| GGTGGTATCTTATGGAAGGA+TGG | 0.518034 | 4.1:-58999870 | MS.gene74510:CDS |
| AGGGTTATAGTCAAATGGAT+TGG | 0.535477 | 4.1:-58999668 | MS.gene74510:CDS |
| ATCAACCAAGAGTGATGCTA+AGG | 0.568914 | 4.1:-58999766 | MS.gene74510:CDS |
| GTTAGAAAGCACAAAACAGA+AGG | 0.581274 | 4.1:-58998164 | MS.gene74510:CDS |
| TTCTGTTCTGACAACTTCTG+AGG | 0.595702 | 4.1:+58999738 | None:intergenic |
| TAATGGTGGTATCTTATGGA+AGG | 0.596595 | 4.1:-58999874 | MS.gene74510:CDS |
| TGATATGTTGATGAAGGCAG+TGG | 0.613696 | 4.1:-58997965 | MS.gene74510:CDS |
| CAAGCTTGTTTCAGAAATCG+CGG | 0.617791 | 4.1:-58999946 | MS.gene74510:CDS |
| AGGTGTTGATATGTTGATGA+AGG | 0.619372 | 4.1:-58997971 | MS.gene74510:CDS |
| CCATATATGACGTTTCACCC+TGG | 0.621706 | 4.1:-58998098 | MS.gene74510:CDS |
| ACAGAATAACAGCACCTGCA+AGG | 0.634591 | 4.1:+58999619 | None:intergenic |
| AGTAGTAACAACAATAATGG+TGG | 0.644225 | 4.1:-58999888 | MS.gene74510:CDS |
| GTAGGTGAGTACACCTGCGG+TGG | 0.648416 | 4.1:-58999976 | None:intergenic |
| ACAAAACAGAAGGTGAAATG+TGG | 0.673732 | 4.1:-58998154 | MS.gene74510:CDS |
| ATGGTGATATATTGTAGACA+CGG | 0.675806 | 4.1:+58998117 | None:intergenic |
| GATATGTTGATGAAGGCAGT+GGG | 0.698446 | 4.1:-58997964 | MS.gene74510:CDS |
| TATATGACGTTTCACCCTGG+AGG | 0.704322 | 4.1:-58998095 | MS.gene74510:intron |
| GAAATGTGGACTGTATTGAA+AGG | 0.710255 | 4.1:-58998140 | MS.gene74510:CDS |
| TTTGTAGGTGAGTACACCTG+CGG | 0.761431 | 4.1:-58999979 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATTTAAAAAGTG+AGG | + | chr4.1:58999148-58999167 | None:intergenic | 10.0% |
| !! | AAAAAATATTTAAAAAGTGA+GGG | + | chr4.1:58999147-58999166 | None:intergenic | 10.0% |
| !!! | TCACTTTTTAAATATTTTTT+TGG | - | chr4.1:58999147-58999166 | MS.gene74510:intron | 10.0% |
| !! | AAAAATATTTAAAAAGTGAG+GGG | + | chr4.1:58999146-58999165 | None:intergenic | 15.0% |
| !! | TATAGTTATGTACATATAAA+TGG | + | chr4.1:58999523-58999542 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTAAGAATAAG+AGG | - | chr4.1:58999646-58999665 | MS.gene74510:CDS | 15.0% |
| !! | AAAGAAAGCTAACATTTATA+AGG | + | chr4.1:58999396-58999415 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGAATGGAATTA+AGG | + | chr4.1:58999285-58999304 | None:intergenic | 20.0% |
| !! | AGAAAAAAGAATGGAATTAA+GGG | + | chr4.1:58999284-58999303 | None:intergenic | 20.0% |
| !! | GATTAGATATTATTAGAACT+TGG | + | chr4.1:58998524-58998543 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACTTCAATTAA+CGG | - | chr4.1:58999299-58999318 | MS.gene74510:intron | 20.0% |
| ! | AGTTGAAAAATGAATATGTG+TGG | - | chr4.1:58998413-58998432 | MS.gene74510:intron | 25.0% |
| ! | ATTATATATGCATTTCCTGT+TGG | - | chr4.1:58999910-58999929 | MS.gene74510:CDS | 25.0% |
| ! | GAAAAAAGAATGGAATTAAG+GGG | + | chr4.1:58999283-58999302 | None:intergenic | 25.0% |
| ! | GAAGTGAAAAGAAAAAAGAA+TGG | + | chr4.1:58999293-58999312 | None:intergenic | 25.0% |
| ! | TAATATCTAATCCCAATTGT+TGG | - | chr4.1:58998532-58998551 | MS.gene74510:intron | 25.0% |
| ! | TAGATATTATTAGAACTTGG+AGG | + | chr4.1:58998521-58998540 | None:intergenic | 25.0% |
| ! | TATCATACTATCATAAGCAT+TGG | + | chr4.1:58998477-58998496 | None:intergenic | 25.0% |
| ! | TGTACATAACTATATATCAG+AGG | - | chr4.1:58999529-58999548 | MS.gene74510:intron | 25.0% |
| ! | TTATATATGCATTTCCTGTT+GGG | - | chr4.1:58999911-58999930 | MS.gene74510:CDS | 25.0% |
| !! | ATTTTACGTATAATCCGTAA+GGG | + | chr4.1:58999028-58999047 | None:intergenic | 25.0% |
| !! | TGATTCTTCAAACTCTAAAA+AGG | - | chr4.1:58998075-58998094 | MS.gene74510:intron | 25.0% |
| !! | TTCAAGTATTGTCAACAATA+TGG | + | chr4.1:58998364-58998383 | None:intergenic | 25.0% |
| !! | TTTTTGGATATTTCTTTCCA+AGG | - | chr4.1:58999163-58999182 | MS.gene74510:intron | 25.0% |
| !!! | TTGTACTTGTTTTGTTATGT+TGG | - | chr4.1:58999562-58999581 | MS.gene74510:intron | 25.0% |
| AAATGAAAATCACACAGCAA+AGG | + | chr4.1:58999221-58999240 | None:intergenic | 30.0% | |
| AACACTAATCGTAAAATCGT+AGG | + | chr4.1:58998635-58998654 | None:intergenic | 30.0% | |
| ACAATAATGGTGGTATCTTA+TGG | - | chr4.1:58998035-58998054 | MS.gene74510:intron | 30.0% | |
| AGCAGTAGTAACAACAATAA+TGG | - | chr4.1:58998022-58998041 | MS.gene74510:intron | 30.0% | |
| AGTAGTAACAACAATAATGG+TGG | - | chr4.1:58998025-58998044 | MS.gene74510:intron | 30.0% | |
| ATAAATGGTCTACAACTTTC+TGG | + | chr4.1:58999508-58999527 | None:intergenic | 30.0% | |
| ATAACACTTACTCTCAATCA+TGG | - | chr4.1:58998579-58998598 | MS.gene74510:intron | 30.0% | |
| ATGGTGATATATTGTAGACA+CGG | + | chr4.1:58999799-58999818 | None:intergenic | 30.0% | |
| ATTAACGGAAGCGATTATAT+AGG | + | chr4.1:58998709-58998728 | None:intergenic | 30.0% | |
| ATTTGAGGATTCTTCCTTTA+TGG | + | chr4.1:58997999-58998018 | None:intergenic | 30.0% | |
| CTAACATTTATAAGGAAGAG+TGG | + | chr4.1:58999388-58999407 | None:intergenic | 30.0% | |
| GGTCATATCAACTTTAGTAA+TGG | + | chr4.1:58998500-58998519 | None:intergenic | 30.0% | |
| TATATATGCATTTCCTGTTG+GGG | - | chr4.1:58999912-58999931 | MS.gene74510:CDS | 30.0% | |
| TGAAAAGGGTTATAGTCAAA+TGG | - | chr4.1:58998240-58998259 | MS.gene74510:intron | 30.0% | |
| ! | ATCGTGGATTTTACGATTAA+CGG | + | chr4.1:58998724-58998743 | None:intergenic | 30.0% |
| ! | GATTTTACGTATAATCCGTA+AGG | + | chr4.1:58999029-58999048 | None:intergenic | 30.0% |
| ! | TCTTCAAACTCTAAAAAGGA+GGG | - | chr4.1:58998079-58998098 | MS.gene74510:intron | 30.0% |
| ! | TGACTATAACCCTTTTCAAA+AGG | + | chr4.1:58998238-58998257 | None:intergenic | 30.0% |
| ! | TTCTTCAAACTCTAAAAAGG+AGG | - | chr4.1:58998078-58998097 | MS.gene74510:intron | 30.0% |
| ! | TTTTACGTATAATCCGTAAG+GGG | + | chr4.1:58999027-58999046 | None:intergenic | 30.0% |
| !! | ATTTCACTGATTTAGGATTC+TGG | + | chr4.1:58998681-58998700 | None:intergenic | 30.0% |
| !! | CTATCATAAGCATTGGAAAT+TGG | + | chr4.1:58998470-58998489 | None:intergenic | 30.0% |
| !! | GGATTTCATTTCACTGATTT+AGG | + | chr4.1:58998688-58998707 | None:intergenic | 30.0% |
| !! | TTTCACTGATTTAGGATTCT+GGG | + | chr4.1:58998680-58998699 | None:intergenic | 30.0% |
| AAAAGAATGGAATTAAGGGG+CGG | + | chr4.1:58999280-58999299 | None:intergenic | 35.0% | |
| AACATCATGTATGTTGATCC+AGG | - | chr4.1:58999683-58999702 | MS.gene74510:CDS | 35.0% | |
| AATCGCGGATATTTCCATAA+AGG | - | chr4.1:58997982-58998001 | MS.gene74510:intron | 35.0% | |
| ACAAAACAGAAGGTGAAATG+TGG | - | chr4.1:58999759-58999778 | MS.gene74510:CDS | 35.0% | |
| AGAAACCCATTTCAGTAACT+CGG | - | chr4.1:58998841-58998860 | MS.gene74510:intron | 35.0% | |
| AGAGCAAGGTAGTAAAAATC+AGG | + | chr4.1:58999051-58999070 | None:intergenic | 35.0% | |
| AGAGCTTGAAACCAAAAGTA+GGG | + | chr4.1:58999334-58999353 | None:intergenic | 35.0% | |
| AGGGTTATAGTCAAATGGAT+TGG | - | chr4.1:58998245-58998264 | MS.gene74510:intron | 35.0% | |
| AGTCTCACGAGTTACTAAAA+CGG | + | chr4.1:58998881-58998900 | None:intergenic | 35.0% | |
| ATGTTGTTATGTTCCCCTTA+CGG | - | chr4.1:58999011-58999030 | MS.gene74510:intron | 35.0% | |
| CAATCATGGTAGTCAAAATC+AGG | - | chr4.1:58998593-58998612 | MS.gene74510:intron | 35.0% | |
| CTAGTTTAAGTGCATCATGT+AGG | - | chr4.1:58998921-58998940 | MS.gene74510:intron | 35.0% | |
| GAACAGGAGACTAATTTCTA+TGG | - | chr4.1:58999721-58999740 | MS.gene74510:CDS | 35.0% | |
| GAGTTCTGTTAAAAAGCCAA+CGG | - | chr4.1:58998198-58998217 | MS.gene74510:CDS | 35.0% | |
| TAATGGTGGTATCTTATGGA+AGG | - | chr4.1:58998039-58998058 | MS.gene74510:intron | 35.0% | |
| TATGTTGATCCAGGTCTAAA+AGG | - | chr4.1:58999692-58999711 | MS.gene74510:CDS | 35.0% | |
| TTAACCCGAGTTACTGAAAT+GGG | + | chr4.1:58998849-58998868 | None:intergenic | 35.0% | |
| TTGAAAGAGTTAAGAGCTAC+TGG | - | chr4.1:58998379-58998398 | MS.gene74510:intron | 35.0% | |
| ! | ACCCTTTTCAAAAGGAACTT+TGG | + | chr4.1:58998230-58998249 | None:intergenic | 35.0% |
| ! | AGATAGCTTTTGCCAACAAT+TGG | + | chr4.1:58998547-58998566 | None:intergenic | 35.0% |
| ! | ATGGAACGTTTTCAAATCGT+GGG | - | chr4.1:58998814-58998833 | MS.gene74510:intron | 35.0% |
| ! | GAAATGTGGACTGTATTGAA+AGG | - | chr4.1:58999773-58999792 | MS.gene74510:CDS | 35.0% |
| ! | GATAGCTTTTGCCAACAATT+GGG | + | chr4.1:58998546-58998565 | None:intergenic | 35.0% |
| ! | GTTAGAAAGCACAAAACAGA+AGG | - | chr4.1:58999749-58999768 | MS.gene74510:CDS | 35.0% |
| ! | TCTAAAAAGGAGGGTACAAT+TGG | - | chr4.1:58998088-58998107 | MS.gene74510:intron | 35.0% |
| !! | AGGTGTTGATATGTTGATGA+AGG | - | chr4.1:58999942-58999961 | MS.gene74510:CDS | 35.0% |
| !! | GCCAAAGTTCCTTTTGAAAA+GGG | - | chr4.1:58998226-58998245 | MS.gene74510:intron | 35.0% |
| !!! | AGTTGATAGTTTTACCTCCA+GGG | + | chr4.1:58999835-58999854 | None:intergenic | 35.0% |
| AAAGAATGGAATTAAGGGGC+GGG | + | chr4.1:58999279-58999298 | None:intergenic | 40.0% | |
| ATCAACCAAGAGTGATGCTA+AGG | - | chr4.1:58998147-58998166 | MS.gene74510:CDS | 40.0% | |
| CAGAGCTTGAAACCAAAAGT+AGG | + | chr4.1:58999335-58999354 | None:intergenic | 40.0% | |
| CTGTTAAAAAGCCAACGGTT+CGG | - | chr4.1:58998203-58998222 | MS.gene74510:CDS | 40.0% | |
| GAAACCCATTTCAGTAACTC+GGG | - | chr4.1:58998842-58998861 | MS.gene74510:intron | 40.0% | |
| GATCAACCATTCAATTCCAG+AGG | + | chr4.1:58999089-58999108 | None:intergenic | 40.0% | |
| GTCTCACGAGTTACTAAAAC+GGG | + | chr4.1:58998880-58998899 | None:intergenic | 40.0% | |
| GTTAACCCGAGTTACTGAAA+TGG | + | chr4.1:58998850-58998869 | None:intergenic | 40.0% | |
| GTTACTACTGCTTGCATTTG+AGG | + | chr4.1:58998014-58998033 | None:intergenic | 40.0% | |
| TAAAATCCACGATCTTCGAG+TGG | - | chr4.1:58998731-58998750 | MS.gene74510:intron | 40.0% | |
| TACGATTAGTGTTGCCTTGA+AGG | - | chr4.1:58998642-58998661 | MS.gene74510:intron | 40.0% | |
| TCAATTCCAGAGGCCAAATT+TGG | + | chr4.1:58999079-58999098 | None:intergenic | 40.0% | |
| TGTTAAAAAGCCAACGGTTC+GGG | - | chr4.1:58998204-58998223 | MS.gene74510:CDS | 40.0% | |
| TTCTGTTCTGACAACTTCTG+AGG | + | chr4.1:58998178-58998197 | None:intergenic | 40.0% | |
| TTTCCTGTTGGGGAAAAATC+AGG | - | chr4.1:58999922-58999941 | MS.gene74510:CDS | 40.0% | |
| ! | ACAACTTTCTGGTCAGACAA+AGG | + | chr4.1:58999497-58999516 | None:intergenic | 40.0% |
| ! | CAAGCTTGTTTCAGAAATCG+CGG | - | chr4.1:58997967-58997986 | MS.gene74510:CDS | 40.0% |
| ! | GATATGTTGATGAAGGCAGT+GGG | - | chr4.1:58999949-58999968 | MS.gene74510:CDS | 40.0% |
| ! | GATGGAACGTTTTCAAATCG+TGG | - | chr4.1:58998813-58998832 | MS.gene74510:intron | 40.0% |
| ! | GTGTGGCATGTATCAGTTTT+TGG | - | chr4.1:58998430-58998449 | MS.gene74510:intron | 40.0% |
| ! | TGATATGTTGATGAAGGCAG+TGG | - | chr4.1:58999948-58999967 | MS.gene74510:CDS | 40.0% |
| !! | AGTTTTAACGTAGCAGAGCT+CGG | - | chr4.1:58999117-58999136 | MS.gene74510:intron | 40.0% |
| !! | ATTTGGCCTCTGGAATTGAA+TGG | - | chr4.1:58999080-58999099 | MS.gene74510:intron | 40.0% |
| !! | GGCCAAAGTTCCTTTTGAAA+AGG | - | chr4.1:58998225-58998244 | MS.gene74510:intron | 40.0% |
| !!! | GAGTTGATAGTTTTACCTCC+AGG | + | chr4.1:58999836-58999855 | None:intergenic | 40.0% |
| ACAGAATAACAGCACCTGCA+AGG | + | chr4.1:58998297-58998316 | None:intergenic | 45.0% | |
| AGCAAAGGACATCGCATTCA+AGG | + | chr4.1:58999206-58999225 | None:intergenic | 45.0% | |
| AGCTCTGCTAGTCACTCAAT+TGG | - | chr4.1:58999348-58999367 | MS.gene74510:intron | 45.0% | |
| CACTAGGGTGAAATCAACCT+TGG | + | chr4.1:58999183-58999202 | None:intergenic | 45.0% | |
| CCAGGGTGAAACGTCATATA+TGG | + | chr4.1:58999818-58999837 | None:intergenic | 45.0% | |
| CCATATATGACGTTTCACCC+TGG | - | chr4.1:58999815-58999834 | MS.gene74510:CDS | 45.0% | |
| CGAATCCTTAGCATCACTCT+TGG | + | chr4.1:58998155-58998174 | None:intergenic | 45.0% | |
| CTAGTCTCGAACAACTAACC+AGG | + | chr4.1:58998905-58998924 | None:intergenic | 45.0% | |
| CTTGCTCTCTGCTCCAAATT+TGG | - | chr4.1:58999063-58999082 | MS.gene74510:intron | 45.0% | |
| GGTGGTATCTTATGGAAGGA+TGG | - | chr4.1:58998043-58998062 | MS.gene74510:intron | 45.0% | |
| GTCTAAAAGGACAGTCGAAC+AGG | - | chr4.1:58999705-58999724 | MS.gene74510:CDS | 45.0% | |
| TAGTAACTCGTGAGACTTCC+TGG | - | chr4.1:58998884-58998903 | MS.gene74510:intron | 45.0% | |
| TATATGACGTTTCACCCTGG+AGG | - | chr4.1:58999818-58999837 | MS.gene74510:CDS | 45.0% | |
| TTCTACCACTGCAACCAGAA+TGG | + | chr4.1:58998763-58998782 | None:intergenic | 45.0% | |
| ! | ACACCTGATTTTTCCCCAAC+AGG | + | chr4.1:58999928-58999947 | None:intergenic | 45.0% |
| ! | ACATCGCATTCAAGGCACTA+GGG | + | chr4.1:58999198-58999217 | None:intergenic | 45.0% |
| ! | CAAATTTGGAGCAGAGAGCA+AGG | + | chr4.1:58999065-58999084 | None:intergenic | 45.0% |
| ! | CTGATTTAGGATTCTGGGTG+TGG | + | chr4.1:58998675-58998694 | None:intergenic | 45.0% |
| ! | TTCGACTGTCCTTTTAGACC+TGG | + | chr4.1:58999704-58999723 | None:intergenic | 45.0% |
| !! | CACTCTAGGGTTAGGAAAGA+TGG | - | chr4.1:58998795-58998814 | MS.gene74510:intron | 45.0% |
| !! | GTTTTAACGTAGCAGAGCTC+GGG | - | chr4.1:58999118-58999137 | MS.gene74510:intron | 45.0% |
| !!! | TTTTTTTTAATAAAACAATA+TGG | + | chr4.1:58998323-58998342 | None:intergenic | 5.0% |
| ATAACAGCACCTGCAAGGTC+AGG | + | chr4.1:58998292-58998311 | None:intergenic | 50.0% | |
| CAGAATCCACTCGAAGATCG+TGG | + | chr4.1:58998740-58998759 | None:intergenic | 50.0% | |
| GGTGTGGTCATGATCCTTCA+AGG | + | chr4.1:58998659-58998678 | None:intergenic | 50.0% | |
| TCTGCTCCAAATTTGGCCTC+TGG | - | chr4.1:58999070-58999089 | MS.gene74510:intron | 50.0% | |
| ! | AGCTTGTTTGTTTCCACCGC+AGG | + | chr4.1:58997953-58997972 | None:intergenic | 50.0% |
| ! | GACATCGCATTCAAGGCACT+AGG | + | chr4.1:58999199-58999218 | None:intergenic | 50.0% |
| ! | GGATGTGCTCTCCCTACTTT+TGG | - | chr4.1:58999320-58999339 | MS.gene74510:intron | 50.0% |
| ! | TCGAGTGGATTCTGCCATTC+TGG | - | chr4.1:58998746-58998765 | MS.gene74510:intron | 50.0% |
| ! | TTCTGCCATTCTGGTTGCAG+TGG | - | chr4.1:58998755-58998774 | MS.gene74510:intron | 50.0% |
| AAGGGGCGGGAGAAGAAACA+GGG | + | chr4.1:58999266-58999285 | None:intergenic | 55.0% | |
| CGAACTCATCCTGACCTTGC+AGG | - | chr4.1:58998280-58998299 | MS.gene74510:intron | 55.0% | |
| TAAGGGGCGGGAGAAGAAAC+AGG | + | chr4.1:58999267-58999286 | None:intergenic | 55.0% | |
| TGCAGTGGTAGAAGTCGCGA+CGG | - | chr4.1:58998770-58998789 | MS.gene74510:intron | 55.0% | |
| GGAACTTTGGCCCGAACCGT+TGG | + | chr4.1:58998217-58998236 | None:intergenic | 60.0% | |
| AAGTCGCGACGGCGCACTCT+AGG | - | chr4.1:58998781-58998800 | MS.gene74510:intron | 65.0% | |
| AGTCGCGACGGCGCACTCTA+GGG | - | chr4.1:58998782-58998801 | MS.gene74510:intron | 65.0% | |
| !! | CGACGGCGCACTCTAGGGTT+AGG | - | chr4.1:58998787-58998806 | MS.gene74510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 58997941 | 58999994 | 58997941 | ID=MS.gene74510 |
| chr4.1 | mRNA | 58997941 | 58999994 | 58997941 | ID=MS.gene74510.t1;Parent=MS.gene74510 |
| chr4.1 | exon | 58999634 | 58999994 | 58999634 | ID=MS.gene74510.t1.exon1;Parent=MS.gene74510.t1 |
| chr4.1 | CDS | 58999634 | 58999994 | 58999634 | ID=cds.MS.gene74510.t1;Parent=MS.gene74510.t1 |
| chr4.1 | exon | 58998096 | 58998230 | 58998096 | ID=MS.gene74510.t1.exon2;Parent=MS.gene74510.t1 |
| chr4.1 | CDS | 58998096 | 58998230 | 58998096 | ID=cds.MS.gene74510.t1;Parent=MS.gene74510.t1 |
| chr4.1 | exon | 58997941 | 58997991 | 58997941 | ID=MS.gene74510.t1.exon3;Parent=MS.gene74510.t1 |
| chr4.1 | CDS | 58997941 | 58997991 | 58997941 | ID=cds.MS.gene74510.t1;Parent=MS.gene74510.t1 |
| Gene Sequence |
| Protein sequence |
