AlfalfaGEDB | MS.gene75523

M. sativa cultivar XinJiangDaYe / MS.gene75523

KEGG: -
GO: -
PFAM: PF02657.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75523.t1	XP_003601900.1	88.9	180	11	3	30	209	24	194	9.40E-82	313.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75523.t1	Q9FXE3	49.2	181	89	3	30	209	31	209	3.4e-40	166.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75523.t1	G7J358	88.9	180	11	3	30	209	24	194	6.8e-82	313.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene75523	-0.800022	1.75E-48	-1.69E-46
MS.gene049312	MS.gene75523	0.814862	1.24E-51	-1.69E-46
MS.gene050216	MS.gene75523	-0.843162	1.66E-58	-1.69E-46
MS.gene050380	MS.gene75523	0.810849	9.40E-51	-1.69E-46
MS.gene050381	MS.gene75523	0.851654	7.71E-61	-1.69E-46
MS.gene050504	MS.gene75523	-0.800134	1.66E-48	-1.69E-46
MS.gene050612	MS.gene75523	-0.80228	6.05E-49	-1.69E-46
MS.gene050868	MS.gene75523	-0.814752	1.31E-51	-1.69E-46
MS.gene050871	MS.gene75523	-0.813449	2.55E-51	-1.69E-46
MS.gene050883	MS.gene75523	0.807841	4.15E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75523.t1	MTR_3g086590	90.431	209	5	4	1	209	1	194	2.59e-133	372
MS.gene75523.t1	MTR_4g104680	58.519	135	54	2	75	209	58	190	1.43e-47	166
MS.gene75523.t1	MTR_1g047990	34.109	129	82	1	75	203	78	203	9.36e-17	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75523.t1	AT1G67810	51.064	188	84	5	25	209	27	209	1.13e-56	180
MS.gene75523.t1	AT5G50210	48.889	135	67	1	75	209	87	219	1.55e-37	138
MS.gene75523.t1	AT4G26500	35.659	129	80	1	75	203	86	211	1.82e-16	77.0

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Find 69 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGAAGGAGAAGGAGA+AGG	0.545044	3.3:-72266154	None:intergenic
AACCCGGTCGGACCGGTCTA+AGG	0.264863	3.3:-72266401	None:intergenic
AACGGCGGCGGCGTTAAGTT+TGG	0.345006	3.3:-72266182	None:intergenic
AAGGAGAAGGAGAAGGAGGG+AGG	0.455202	3.3:-72266147	None:intergenic
AATGTGTTGTTGAAGGGAGG+AGG	0.512295	3.3:-72266241	None:intergenic
ACCCGGTCGGACCGGTCTAA+GGG	0.546406	3.3:-72266400	None:intergenic
AGAAGGAGGGAGGGTTAATA+GGG	0.328208	3.3:-72266137	None:intergenic
AGACCGGTCCGACCGGGTTC+CGG	0.370178	3.3:+72266405	MS.gene75523:CDS
AGATATCGAAGGGGTTCTGT+TGG	0.579062	3.3:+72266521	MS.gene75523:CDS
AGCGATTCGGAGATATCGAA+GGG	0.599661	3.3:+72266511	MS.gene75523:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATGTTAAAGCACGTTCT+AGG	+	chr3.3:72266635-72266654	MS.gene75523:CDS	30.0%
ATTTCCATTCCCAACTTCTA+CGG	+	chr3.3:72266105-72266124	MS.gene75523:CDS	35.0%
AAATGAGAAGGAGAAGGAGA+AGG	-	chr3.3:72266157-72266176	None:intergenic	40.0%
AGGTTGTTCGACAGATGTTT+GGG	+	chr3.3:72266441-72266460	MS.gene75523:CDS	40.0%
AGTTTGGAGGAGAAATGAGA+AGG	-	chr3.3:72266169-72266188	None:intergenic	40.0%
GTAGAAGTTGGGAATGGAAA+TGG	-	chr3.3:72266106-72266125	None:intergenic	40.0%
GTTGGGAATGGAAATGGAAA+TGG	-	chr3.3:72266100-72266119	None:intergenic	40.0%
TAGACAAAGGTAGGAGAATG+AGG	+	chr3.3:72266476-72266495	MS.gene75523:CDS	40.0%
TGCCATGCAAAAAGCTACAA+AGG	+	chr3.3:72266684-72266703	MS.gene75523:CDS	40.0%
TTCTCCTACCTTTGTCTATG+CGG	-	chr3.3:72266474-72266493	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	72266088	72266717	72266088	ID=MS.gene75523
chr3.3	mRNA	72266088	72266717	72266088	ID=MS.gene75523.t1;Parent=MS.gene75523
chr3.3	exon	72266088	72266717	72266088	ID=MS.gene75523.t1.exon1;Parent=MS.gene75523.t1
chr3.3	CDS	72266088	72266717	72266088	ID=cds.MS.gene75523.t1;Parent=MS.gene75523.t1

Gene Sequence

>MS.gene75523

ATGCTATATCCATTTCCATTTCCATTCCCAACTTCTACGGCAAGTTCCACCCTATTAACCCTCCCTCCTTCTCCTTCTCCTTCTCATTTCTCCTCCAAACTTAACGCCGCCGCCGTTACTTCAAAACAAATCCATCTCAAACTCTCCGTTAACCCTCCTCCCTTCAACAACACATTAACATCATCTTTTTCATCATCACCGTCATCTCACGGTGTCACTGACAAGCTCAACAATCTCACCATCGAATTTGCCTCTCTCTCCGAACCCATCGACCGAGTAAAAAGACTATTACATTACGCATCTTTATTGCCTCCCTTAGACCGGTCCGACCGGGTTCCGGAGAACCGGGTGACAGGTTGTTCGACAGATGTTTGGGTGGTGGCCCGCATAGACAAAGGTAGGAGAATGAGGTTTCAAGCAGACAGCGATTCGGAGATATCGAAGGGGTTCTGTTGGTGTCTTGTTTGGATGTTTGACGGCGCGGAGCCTGAGGAAGTGCTTAACGTCGAGAAAGATGTTTTGGTTGGTATGAATGTAGTAGGGTTGAATAATGTTAAAGCACGTTCTAGGATTAACACGTGGCATAATGTTTTCTTTGCCATGCAAAAAGCTACAAAGGATTTAATTTAA

Protein sequence

>MS.gene75523.t1

MLYPFPFPFPTSTASSTLLTLPPSPSPSHFSSKLNAAAVTSKQIHLKLSVNPPPFNNTLTSSFSSSPSSHGVTDKLNNLTIEFASLSEPIDRVKRLLHYASLLPPLDRSDRVPENRVTGCSTDVWVVARIDKGRRMRFQADSDSEISKGFCWCLVWMFDGAEPEEVLNVEKDVLVGMNVVGLNNVKARSRINTWHNVFFAMQKATKDLI