Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77677.t1 | XP_013455381.1 | 89.3 | 281 | 20 | 3 | 1 | 278 | 1 | 274 | 2.00E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77677.t1 | A0A072UIE0 | 89.3 | 281 | 20 | 3 | 1 | 278 | 1 | 274 | 1.4e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene77677 | 0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene049284 | MS.gene77677 | 0.809035 | 2.31E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene77677 | 0.801243 | 9.87E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene77677 | 0.801871 | 7.34E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene77677 | 0.810781 | 9.72E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene77677 | -0.821005 | 5.08E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene77677 | 0.802664 | 5.04E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene77677 | 0.841819 | 3.77E-58 | -1.69E-46 |
| MS.gene050812 | MS.gene77677 | 0.827395 | 1.60E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene77677 | 0.816568 | 5.17E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene77677 | 0.810933 | 9.01E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene77677 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene77677 | 0.810275 | 1.25E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene77677 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene77677 | 0.826332 | 2.88E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene77677 | 0.814359 | 1.60E-51 | -1.69E-46 |
| MS.gene052322 | MS.gene77677 | 0.817691 | 2.89E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene77677 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene77677 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene77677 | 0.82592 | 3.60E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene77677 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene055370 | MS.gene77677 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene77677 | 0.807733 | 4.38E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene77677 | 0.805763 | 1.14E-49 | -1.69E-46 |
| MS.gene056497 | MS.gene77677 | 0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene77677 | 0.800986 | 1.11E-48 | -1.69E-46 |
| MS.gene056659 | MS.gene77677 | 0.80482 | 1.80E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene77677 | -0.811345 | 7.33E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene77677 | 0.829342 | 5.43E-55 | -1.69E-46 |
| MS.gene057207 | MS.gene77677 | 0.821077 | 4.89E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene77677 | 0.807862 | 4.11E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene77677 | 0.818062 | 2.38E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene77677 | 0.822991 | 1.76E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene77677 | 0.817658 | 2.94E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene77677 | 0.822547 | 2.23E-53 | -1.69E-46 |
| MS.gene058928 | MS.gene77677 | 0.81015 | 1.33E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene77677 | 0.801453 | 8.94E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene77677 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene059597 | MS.gene77677 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene77677 | 0.800147 | 1.65E-48 | -1.69E-46 |
| MS.gene059894 | MS.gene77677 | 0.807867 | 4.10E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene77677 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene77677 | 0.83215 | 1.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77677.t1 | MTR_4g036465 | 89.324 | 281 | 20 | 3 | 1 | 278 | 1 | 274 | 7.76e-170 | 471 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77677.t1 | AT4G25170 | 37.069 | 232 | 118 | 6 | 64 | 275 | 118 | 341 | 5.16e-37 | 134 |
| MS.gene77677.t1 | AT4G25170 | 34.818 | 247 | 118 | 7 | 64 | 275 | 118 | 356 | 5.01e-33 | 124 |
| MS.gene77677.t1 | AT5G61490 | 37.500 | 208 | 102 | 3 | 69 | 275 | 75 | 255 | 1.52e-30 | 115 |
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGTTTAAAACAGAAAA+AGG | 0.227940 | 4.4:-67297680 | None:intergenic |
| CAGCATAAGTGCAGGGTGTT+AGG | 0.262984 | 4.4:+67299858 | MS.gene77677:intron |
| CTTCACGTGCCGAGCTCCTT+AGG | 0.274000 | 4.4:+67299886 | MS.gene77677:CDS |
| ATCGCCAGTAGTAGTATTAT+TGG | 0.307494 | 4.4:-67297717 | None:intergenic |
| AAAACATTTGTTGTATTGTC+AGG | 0.320543 | 4.4:-67300843 | None:intergenic |
| TTCTTTCATGCTTTCGATCA+TGG | 0.323980 | 4.4:+67301013 | MS.gene77677:CDS |
| CTCGATTACTTCGATGAGTT+TGG | 0.325783 | 4.4:-67300892 | None:intergenic |
| TGATAAAGATTTGCGTTTGC+AGG | 0.345537 | 4.4:-67297615 | None:intergenic |
| TCGCCAGTAGTAGTATTATT+GGG | 0.354114 | 4.4:-67297716 | None:intergenic |
| TATCAACCGATGAAGCTGTT+TGG | 0.376110 | 4.4:+67300425 | MS.gene77677:CDS |
| GGTGTTGCTGCACCCTTCAT+TGG | 0.377511 | 4.4:+67297755 | MS.gene77677:CDS |
| ATCAACCGATGAAGCTGTTT+GGG | 0.379156 | 4.4:+67300426 | MS.gene77677:CDS |
| TGAGAAGAATAAGAAGATAA+TGG | 0.393458 | 4.4:-67297647 | None:intergenic |
| AATAAGAAGATAATGGAAAA+GGG | 0.394078 | 4.4:-67297640 | None:intergenic |
| GAATAAGAAGATAATGGAAA+AGG | 0.394823 | 4.4:-67297641 | None:intergenic |
| GCAGACTGATCCATCTGTTC+AGG | 0.407910 | 4.4:+67300067 | MS.gene77677:CDS |
| AGCATAAGTGCAGGGTGTTA+GGG | 0.422717 | 4.4:+67299859 | MS.gene77677:intron |
| AATTATGTTGCGCCTAACTT+TGG | 0.436566 | 4.4:-67301064 | None:intergenic |
| AGGAGCTCGGCACGTGAAGC+AGG | 0.444376 | 4.4:-67299882 | None:intergenic |
| TATTCTCATCTTCAGAAACT+TGG | 0.451065 | 4.4:-67299953 | None:intergenic |
| GGATTATATGGAAACAAAGA+TGG | 0.462920 | 4.4:-67299990 | None:intergenic |
| ATGAAGTTGTTCAGCAACTC+AGG | 0.463056 | 4.4:+67300464 | MS.gene77677:CDS |
| TTCACGTGCCGAGCTCCTTA+GGG | 0.470566 | 4.4:+67299887 | MS.gene77677:CDS |
| GAAATTGAGCTAGGCAGTCT+TGG | 0.472920 | 4.4:+67299930 | MS.gene77677:CDS |
| ACCATTACAATGAAGCTTCG+CGG | 0.494281 | 4.4:+67297572 | None:intergenic |
| AGAAGGAGGAGGACCAATGA+AGG | 0.500321 | 4.4:-67297768 | None:intergenic |
| TCCTCCTCCTTCTCAAACTG+AGG | 0.503769 | 4.4:+67297778 | MS.gene77677:CDS |
| ATATAATCCGAAAATGCTAC+AGG | 0.513690 | 4.4:+67300004 | MS.gene77677:CDS |
| GGTGCATCGTAACCAAAGTT+AGG | 0.522125 | 4.4:+67301052 | MS.gene77677:CDS |
| AAACATTTGTTGTATTGTCA+GGG | 0.524197 | 4.4:-67300842 | None:intergenic |
| ATAGACTGCACCTGAACAGA+TGG | 0.531174 | 4.4:-67300077 | None:intergenic |
| CGCCAGTAGTAGTATTATTG+GGG | 0.534177 | 4.4:-67297715 | None:intergenic |
| GTGCCGAGCTCCTTAGGGAC+AGG | 0.542730 | 4.4:+67299892 | MS.gene77677:CDS |
| GTGCAGCAACACCATCATCA+TGG | 0.547802 | 4.4:-67297745 | None:intergenic |
| TGTTGAAATACCTGTCCCTA+AGG | 0.548759 | 4.4:-67299902 | None:intergenic |
| AGCCTCCCAAACAGCTTCAT+CGG | 0.552589 | 4.4:-67300431 | None:intergenic |
| ATAAGAAGATAATGGAAAAG+GGG | 0.572203 | 4.4:-67297639 | None:intergenic |
| CTGAAGATGAGAATATAGAC+TGG | 0.575112 | 4.4:+67299961 | MS.gene77677:CDS |
| AACAAACTAGAAATTGAGCT+AGG | 0.577265 | 4.4:+67299921 | MS.gene77677:CDS |
| CCGAAAATGCTACAGGATGA+CGG | 0.579444 | 4.4:+67300011 | MS.gene77677:CDS |
| TGAAGTTGTTCAGCAACTCA+GGG | 0.586059 | 4.4:+67300465 | MS.gene77677:CDS |
| GATCATGGTCTTGTTGATTG+TGG | 0.588306 | 4.4:+67301028 | MS.gene77677:CDS |
| ATGCTCTCTCTTCTCTTCAA+CGG | 0.589548 | 4.4:+67297807 | MS.gene77677:CDS |
| ATACCTGTCCCTAAGGAGCT+CGG | 0.592229 | 4.4:-67299895 | None:intergenic |
| GGCGATGTTATCCATGATGA+TGG | 0.592491 | 4.4:+67297734 | MS.gene77677:CDS |
| TGAACCTCAGTTTGAGAAGG+AGG | 0.594126 | 4.4:-67297782 | None:intergenic |
| TTTGCGTTTGCAGGTACGTG+TGG | 0.611697 | 4.4:-67297606 | None:intergenic |
| CATGGTCTTGTTGATTGTGG+TGG | 0.612289 | 4.4:+67301031 | MS.gene77677:CDS |
| ACCTCAGTTTGAGAAGGAGG+AGG | 0.616992 | 4.4:-67297779 | None:intergenic |
| TCATGAACCTCAGTTTGAGA+AGG | 0.620679 | 4.4:-67297785 | None:intergenic |
| GAAGGAGGAGGACCAATGAA+GGG | 0.630566 | 4.4:-67297767 | None:intergenic |
| AACCGATGAAGCTGTTTGGG+AGG | 0.644231 | 4.4:+67300429 | MS.gene77677:CDS |
| AAGTTGTTCAGCAACTCAGG+GGG | 0.698699 | 4.4:+67300467 | MS.gene77677:CDS |
| GCCAGTAGTAGTATTATTGG+GGG | 0.702761 | 4.4:-67297714 | None:intergenic |
| GAAGTTGTTCAGCAACTCAG+GGG | 0.702778 | 4.4:+67300466 | MS.gene77677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATATGAGATTAATAT+AGG | - | chr4.4:67298607-67298626 | None:intergenic | 15.0% |
| !! | AAGAGTTAAAAAAATGATAT+AGG | + | chr4.4:67298630-67298649 | MS.gene77677:intron | 15.0% |
| !! | TTAAAATTCATATAACAGTA+TGG | - | chr4.4:67299149-67299168 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTATCACAATCT+TGG | - | chr4.4:67300925-67300944 | None:intergenic | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+CGG | - | chr4.4:67298446-67298465 | None:intergenic | 15.0% |
| !!! | TGAATTTGATTTTTTGAATT+CGG | + | chr4.4:67298984-67299003 | MS.gene77677:intron | 15.0% |
| !!! | TTATAGATATTTGATAACTA+AGG | + | chr4.4:67300372-67300391 | MS.gene77677:intron | 15.0% |
| !!! | TTTTATTGTTTAAGTGATAT+TGG | + | chr4.4:67297903-67297922 | MS.gene77677:intron | 15.0% |
| !!! | TTTTCGTTTTCTTTAATATT+TGG | + | chr4.4:67300516-67300535 | MS.gene77677:intron | 15.0% |
| !! | AAACTATTGTTTACCAAATT+TGG | + | chr4.4:67299807-67299826 | MS.gene77677:intron | 20.0% |
| !! | AACTAGTAGTAAAAATTTAG+TGG | + | chr4.4:67299600-67299619 | MS.gene77677:intron | 20.0% |
| !! | ATTTGACTGATTAAAAACTT+TGG | + | chr4.4:67298659-67298678 | MS.gene77677:intron | 20.0% |
| !! | TGAGATTAATATAGGATATA+TGG | - | chr4.4:67298599-67298618 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+AGG | + | chr4.4:67298214-67298233 | MS.gene77677:intron | 20.0% |
| !!! | AAACAAACACAATTTTACTA+AGG | - | chr4.4:67297875-67297894 | None:intergenic | 20.0% |
| !!! | AAAGAGTTTAAAACAGAAAA+AGG | - | chr4.4:67297683-67297702 | None:intergenic | 20.0% |
| !!! | AATAAGAAGATAATGGAAAA+GGG | - | chr4.4:67297643-67297662 | None:intergenic | 20.0% |
| !!! | AATTACGATTTTGATTATGT+TGG | - | chr4.4:67299339-67299358 | None:intergenic | 20.0% |
| !!! | ATACAACAAATGTTTTGATT+TGG | + | chr4.4:67300850-67300869 | MS.gene77677:CDS | 20.0% |
| !!! | ATGTTTTCTCAAATTGTTAT+TGG | + | chr4.4:67299252-67299271 | MS.gene77677:intron | 20.0% |
| !!! | CATAATTATATTGGTAATGA+TGG | + | chr4.4:67298549-67298568 | MS.gene77677:intron | 20.0% |
| !!! | CATACATAAGCTATTTTTAT+AGG | + | chr4.4:67298014-67298033 | MS.gene77677:intron | 20.0% |
| !!! | GTAGTATTTTGAATTCAATT+TGG | + | chr4.4:67298805-67298824 | MS.gene77677:intron | 20.0% |
| ! | AAAATAAGCTGAAGCTATAT+TGG | + | chr4.4:67298186-67298205 | MS.gene77677:intron | 25.0% |
| ! | AAACACAACACAAATTAAGA+CGG | - | chr4.4:67298881-67298900 | None:intergenic | 25.0% |
| ! | AAAGAGATAATTTAACCATG+AGG | + | chr4.4:67300331-67300350 | MS.gene77677:intron | 25.0% |
| ! | ACCAATATAATTATGAAGCA+CGG | - | chr4.4:67298544-67298563 | None:intergenic | 25.0% |
| ! | ATTATAGAATTATGACCTAC+TGG | + | chr4.4:67300733-67300752 | MS.gene77677:intron | 25.0% |
| ! | CTCAAATCAATATCCAAATT+TGG | - | chr4.4:67299823-67299842 | None:intergenic | 25.0% |
| ! | CTTCAACGGTAAAAATATAT+TGG | + | chr4.4:67297821-67297840 | MS.gene77677:intron | 25.0% |
| ! | GAGTACATAGATTAGATTTA+TGG | + | chr4.4:67300678-67300697 | MS.gene77677:intron | 25.0% |
| ! | TATATCTGCATGATGTTATT+CGG | + | chr4.4:67300642-67300661 | MS.gene77677:intron | 25.0% |
| ! | TGAATTCAATTTGGCAAATT+TGG | + | chr4.4:67298814-67298833 | MS.gene77677:intron | 25.0% |
| ! | TGAGAAGAATAAGAAGATAA+TGG | - | chr4.4:67297650-67297669 | None:intergenic | 25.0% |
| ! | TGATACATTCTTATATGTCA+TGG | + | chr4.4:67299406-67299425 | MS.gene77677:intron | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | + | chr4.4:67298472-67298491 | MS.gene77677:intron | 25.0% |
| !! | ATATTGGTAATCATGGTATA+AGG | + | chr4.4:67297919-67297938 | MS.gene77677:intron | 25.0% |
| !! | TTAAGTGATATTGGTAATCA+TGG | + | chr4.4:67297912-67297931 | MS.gene77677:intron | 25.0% |
| !!! | AAAACATTTGTTGTATTGTC+AGG | - | chr4.4:67300846-67300865 | None:intergenic | 25.0% |
| !!! | AAACATTTGTTGTATTGTCA+GGG | - | chr4.4:67300845-67300864 | None:intergenic | 25.0% |
| !!! | ATAAGAAGATAATGGAAAAG+GGG | - | chr4.4:67297642-67297661 | None:intergenic | 25.0% |
| !!! | CATAAGCTATTTTTATAGGA+AGG | + | chr4.4:67298018-67298037 | MS.gene77677:intron | 25.0% |
| !!! | CTTCTAAAACCCTTATATTA+AGG | + | chr4.4:67298357-67298376 | MS.gene77677:intron | 25.0% |
| !!! | GAATAAGAAGATAATGGAAA+AGG | - | chr4.4:67297644-67297663 | None:intergenic | 25.0% |
| AACAAACTAGAAATTGAGCT+AGG | + | chr4.4:67299921-67299940 | MS.gene77677:CDS | 30.0% | |
| ACAACTGCAACCTTAATATA+AGG | - | chr4.4:67298370-67298389 | None:intergenic | 30.0% | |
| ATATAATCCGAAAATGCTAC+AGG | + | chr4.4:67300004-67300023 | MS.gene77677:CDS | 30.0% | |
| ATATCTGCATGATGTTATTC+GGG | + | chr4.4:67300643-67300662 | MS.gene77677:intron | 30.0% | |
| CAACTGCAACCTTAATATAA+GGG | - | chr4.4:67298369-67298388 | None:intergenic | 30.0% | |
| GGATTATATGGAAACAAAGA+TGG | - | chr4.4:67299993-67300012 | None:intergenic | 30.0% | |
| TATTCTCATCTTCAGAAACT+TGG | - | chr4.4:67299956-67299975 | None:intergenic | 30.0% | |
| TCCGTGCTTCATAATTATAT+TGG | + | chr4.4:67298540-67298559 | MS.gene77677:intron | 30.0% | |
| TTATATTAAGGTTGCAGTTG+TGG | + | chr4.4:67298369-67298388 | MS.gene77677:intron | 30.0% | |
| ! | TGAATTTGATTAGCTGATGT+TGG | + | chr4.4:67298722-67298741 | MS.gene77677:intron | 30.0% |
| ! | TGTAGCATTTTCGGATTATA+TGG | - | chr4.4:67300005-67300024 | None:intergenic | 30.0% |
| ! | TGTGTTTTGTATTCAATTGC+TGG | + | chr4.4:67299059-67299078 | MS.gene77677:intron | 30.0% |
| ! | TTAGCTGATGTTGGAATTTT+AGG | + | chr4.4:67298731-67298750 | MS.gene77677:intron | 30.0% |
| !! | TTATGTCGATAGCTTTGTTA+AGG | + | chr4.4:67300542-67300561 | MS.gene77677:intron | 30.0% |
| !!! | ATTTTTTGAATTCGGATCTG+AGG | + | chr4.4:67298992-67299011 | MS.gene77677:intron | 30.0% |
| AATGACCGTAATGACTAATG+AGG | - | chr4.4:67299655-67299674 | None:intergenic | 35.0% | |
| ATAAATCTCAGCATAAGTGC+AGG | + | chr4.4:67299850-67299869 | MS.gene77677:intron | 35.0% | |
| ATCGCCAGTAGTAGTATTAT+TGG | - | chr4.4:67297720-67297739 | None:intergenic | 35.0% | |
| CATTAGTCATTACGGTCATT+AGG | + | chr4.4:67299655-67299674 | MS.gene77677:intron | 35.0% | |
| CCATACCTCATTAGTCATTA+CGG | + | chr4.4:67299647-67299666 | MS.gene77677:intron | 35.0% | |
| CTGAAGATGAGAATATAGAC+TGG | + | chr4.4:67299961-67299980 | MS.gene77677:CDS | 35.0% | |
| GATCTCTAATTCTGAATTCC+TGG | - | chr4.4:67299548-67299567 | None:intergenic | 35.0% | |
| TAAATCTCAGCATAAGTGCA+GGG | + | chr4.4:67299851-67299870 | MS.gene77677:intron | 35.0% | |
| TAAGTTGTGTGAGACTGTTT+AGG | - | chr4.4:67298277-67298296 | None:intergenic | 35.0% | |
| TATCTGCATGATGTTATTCG+GGG | + | chr4.4:67300644-67300663 | MS.gene77677:intron | 35.0% | |
| TCGCCAGTAGTAGTATTATT+GGG | - | chr4.4:67297719-67297738 | None:intergenic | 35.0% | |
| TGATAAAGATTTGCGTTTGC+AGG | - | chr4.4:67297618-67297637 | None:intergenic | 35.0% | |
| TTCTTTCATGCTTTCGATCA+TGG | + | chr4.4:67301013-67301032 | MS.gene77677:CDS | 35.0% | |
| TTGTGGTTGTTTATGAAGCA+CGG | + | chr4.4:67298386-67298405 | MS.gene77677:intron | 35.0% | |
| TTGTTTATGAAGCACGGATA+CGG | + | chr4.4:67298392-67298411 | MS.gene77677:intron | 35.0% | |
| !!! | GGTTTTAGAAGTCTCAAAAG+CGG | - | chr4.4:67298348-67298367 | None:intergenic | 35.0% |
| ACAGACACTTAACACTGAAC+AGG | - | chr4.4:67299295-67299314 | None:intergenic | 40.0% | |
| ACCCCCAATAATACTACTAC+TGG | + | chr4.4:67297713-67297732 | MS.gene77677:CDS | 40.0% | |
| AGCATTTCAGTGCCTAATCA+TGG | + | chr4.4:67299460-67299479 | MS.gene77677:intron | 40.0% | |
| ATCAACCGATGAAGCTGTTT+GGG | + | chr4.4:67300426-67300445 | MS.gene77677:CDS | 40.0% | |
| ATGAAGTTGTTCAGCAACTC+AGG | + | chr4.4:67300464-67300483 | MS.gene77677:CDS | 40.0% | |
| ATGCTCTCTCTTCTCTTCAA+CGG | + | chr4.4:67297807-67297826 | MS.gene77677:CDS | 40.0% | |
| CCGTAATGACTAATGAGGTA+TGG | - | chr4.4:67299650-67299669 | None:intergenic | 40.0% | |
| CGCCAGTAGTAGTATTATTG+GGG | - | chr4.4:67297718-67297737 | None:intergenic | 40.0% | |
| CTCACACAACTTATGTCAGT+AGG | + | chr4.4:67298284-67298303 | MS.gene77677:intron | 40.0% | |
| CTCGATTACTTCGATGAGTT+TGG | - | chr4.4:67300895-67300914 | None:intergenic | 40.0% | |
| CTGAAATCAGTAAAGCCTCA+TGG | - | chr4.4:67300349-67300368 | None:intergenic | 40.0% | |
| GATGGGCATAAACACTAATC+TGG | + | chr4.4:67300758-67300777 | MS.gene77677:intron | 40.0% | |
| GCACTGAAATGCTTGCAAAA+TGG | - | chr4.4:67299453-67299472 | None:intergenic | 40.0% | |
| GCCAGTAGTAGTATTATTGG+GGG | - | chr4.4:67297717-67297736 | None:intergenic | 40.0% | |
| TATCAACCGATGAAGCTGTT+TGG | + | chr4.4:67300425-67300444 | MS.gene77677:CDS | 40.0% | |
| TCATGAACCTCAGTTTGAGA+AGG | - | chr4.4:67297788-67297807 | None:intergenic | 40.0% | |
| TCATGGTATAAGGCTCTGTT+TGG | + | chr4.4:67297929-67297948 | MS.gene77677:intron | 40.0% | |
| TGAAGTTGTTCAGCAACTCA+GGG | + | chr4.4:67300465-67300484 | MS.gene77677:CDS | 40.0% | |
| TGTTGAAATACCTGTCCCTA+AGG | - | chr4.4:67299905-67299924 | None:intergenic | 40.0% | |
| ! | AAGTTTGCTCACTGCAATGT+TGG | + | chr4.4:67298950-67298969 | MS.gene77677:intron | 40.0% |
| ! | AATTATGACCTACTGGCTGA+TGG | + | chr4.4:67300740-67300759 | MS.gene77677:intron | 40.0% |
| ! | ATTATGACCTACTGGCTGAT+GGG | + | chr4.4:67300741-67300760 | MS.gene77677:intron | 40.0% |
| ! | CATGTGGTGCATAAGACTTT+TGG | - | chr4.4:67299512-67299531 | None:intergenic | 40.0% |
| !! | CTTTGAGAAGCACTTCATAC+TGG | + | chr4.4:67300185-67300204 | MS.gene77677:intron | 40.0% |
| !! | GATCATGGTCTTGTTGATTG+TGG | + | chr4.4:67301028-67301047 | MS.gene77677:CDS | 40.0% |
| !! | TCGATAGCTTTGTTAAGGTG+TGG | + | chr4.4:67300547-67300566 | MS.gene77677:intron | 40.0% |
| AACTCAACGACGCCATGATT+AGG | - | chr4.4:67299475-67299494 | None:intergenic | 45.0% | |
| AACTGTGGGTCTGTTTGGAT+TGG | - | chr4.4:67298324-67298343 | None:intergenic | 45.0% | |
| AAGTTGTTCAGCAACTCAGG+GGG | + | chr4.4:67300467-67300486 | MS.gene77677:CDS | 45.0% | |
| ACATGATGAGCTTAGCTACC+AGG | + | chr4.4:67299527-67299546 | MS.gene77677:intron | 45.0% | |
| ATAGACTGCACCTGAACAGA+TGG | - | chr4.4:67300080-67300099 | None:intergenic | 45.0% | |
| ATCTGTTCAGGTGCAGTCTA+TGG | + | chr4.4:67300079-67300098 | MS.gene77677:intron | 45.0% | |
| CAACACAACACTGACACTTG+TGG | + | chr4.4:67299214-67299233 | MS.gene77677:intron | 45.0% | |
| CACAAGTGTCAGTGTTGTGT+TGG | - | chr4.4:67299216-67299235 | None:intergenic | 45.0% | |
| CCGAAAATGCTACAGGATGA+CGG | + | chr4.4:67300011-67300030 | MS.gene77677:CDS | 45.0% | |
| GAAATTGAGCTAGGCAGTCT+TGG | + | chr4.4:67299930-67299949 | MS.gene77677:CDS | 45.0% | |
| GAAGTTGTTCAGCAACTCAG+GGG | + | chr4.4:67300466-67300485 | MS.gene77677:CDS | 45.0% | |
| GCTATAGCGCTATTGCATAG+CGG | + | chr4.4:67300230-67300249 | MS.gene77677:intron | 45.0% | |
| GCTCTCTGAATTAGTGGTGA+GGG | + | chr4.4:67300573-67300592 | MS.gene77677:intron | 45.0% | |
| GGCGATGTTATCCATGATGA+TGG | + | chr4.4:67297734-67297753 | MS.gene77677:CDS | 45.0% | |
| TATGAAGCACGGACACTCTT+CGG | - | chr4.4:67298533-67298552 | None:intergenic | 45.0% | |
| TGAACCTCAGTTTGAGAAGG+AGG | - | chr4.4:67297785-67297804 | None:intergenic | 45.0% | |
| TGCATGATGTTATTCGGGGA+AGG | + | chr4.4:67300648-67300667 | MS.gene77677:intron | 45.0% | |
| TGGTAGCTAAGCTCATCATG+TGG | - | chr4.4:67299528-67299547 | None:intergenic | 45.0% | |
| TGGTTCGCTCTCTGAATTAG+TGG | + | chr4.4:67300567-67300586 | MS.gene77677:intron | 45.0% | |
| ! | AGCATAAGTGCAGGGTGTTA+GGG | + | chr4.4:67299859-67299878 | MS.gene77677:intron | 45.0% |
| ! | CCGTCATCCTGTAGCATTTT+CGG | - | chr4.4:67300014-67300033 | None:intergenic | 45.0% |
| ! | CTGAAGTGTCAGAGCTACAT+AGG | - | chr4.4:67299172-67299191 | None:intergenic | 45.0% |
| !! | CATGGTCTTGTTGATTGTGG+TGG | + | chr4.4:67301031-67301050 | MS.gene77677:CDS | 45.0% |
| !! | CTATGTAGCTCTGACACTTC+AGG | + | chr4.4:67299170-67299189 | MS.gene77677:intron | 45.0% |
| AACCGATGAAGCTGTTTGGG+AGG | + | chr4.4:67300429-67300448 | MS.gene77677:CDS | 50.0% | |
| ACCTCAGTTTGAGAAGGAGG+AGG | - | chr4.4:67297782-67297801 | None:intergenic | 50.0% | |
| AGAAGGAGGAGGACCAATGA+AGG | - | chr4.4:67297771-67297790 | None:intergenic | 50.0% | |
| AGCCTCCCAAACAGCTTCAT+CGG | - | chr4.4:67300434-67300453 | None:intergenic | 50.0% | |
| AGTCTCAAAAGCGGCAACTG+TGG | - | chr4.4:67298339-67298358 | None:intergenic | 50.0% | |
| ATACCTGTCCCTAAGGAGCT+CGG | - | chr4.4:67299898-67299917 | None:intergenic | 50.0% | |
| CGCTCTCTGAATTAGTGGTG+AGG | + | chr4.4:67300572-67300591 | MS.gene77677:intron | 50.0% | |
| GAAGGAGGAGGACCAATGAA+GGG | - | chr4.4:67297770-67297789 | None:intergenic | 50.0% | |
| GCAGACTGATCCATCTGTTC+AGG | + | chr4.4:67300067-67300086 | MS.gene77677:CDS | 50.0% | |
| GTCTCAAAAGCGGCAACTGT+GGG | - | chr4.4:67298338-67298357 | None:intergenic | 50.0% | |
| GTGCAGCAACACCATCATCA+TGG | - | chr4.4:67297748-67297767 | None:intergenic | 50.0% | |
| GTTTATGCCCATCAGCCAGT+AGG | - | chr4.4:67300751-67300770 | None:intergenic | 50.0% | |
| TCCTCCTCCTTCTCAAACTG+AGG | + | chr4.4:67297778-67297797 | MS.gene77677:CDS | 50.0% | |
| TTTGCGTTTGCAGGTACGTG+TGG | - | chr4.4:67297609-67297628 | None:intergenic | 50.0% | |
| ! | CAGCATAAGTGCAGGGTGTT+AGG | + | chr4.4:67299858-67299877 | MS.gene77677:intron | 50.0% |
| CTCAGGGGGTCAATATCTGC+AGG | + | chr4.4:67300481-67300500 | MS.gene77677:CDS | 55.0% | |
| GCACGGACACTCTTCGGATT+AGG | - | chr4.4:67298527-67298546 | None:intergenic | 55.0% | |
| GGGGGTCAATATCTGCAGGT+TGG | + | chr4.4:67300485-67300504 | MS.gene77677:intron | 55.0% | |
| TTCACGTGCCGAGCTCCTTA+GGG | + | chr4.4:67299887-67299906 | MS.gene77677:CDS | 55.0% | |
| ! | TCTTCGGATTAGGCGTGTCC+CGG | - | chr4.4:67298517-67298536 | None:intergenic | 55.0% |
| !! | GGTGTTGCTGCACCCTTCAT+TGG | + | chr4.4:67297755-67297774 | MS.gene77677:CDS | 55.0% |
| CTTCACGTGCCGAGCTCCTT+AGG | + | chr4.4:67299886-67299905 | MS.gene77677:CDS | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4.4:67298511-67298530 | None:intergenic | 60.0% | |
| GCACGGATACGGACACGACA+CGG | + | chr4.4:67298403-67298422 | MS.gene77677:intron | 60.0% | |
| GCGGCAACTGTGGGTCTGTT+TGG | - | chr4.4:67298329-67298348 | None:intergenic | 60.0% | |
| AGGAGCTCGGCACGTGAAGC+AGG | - | chr4.4:67299885-67299904 | None:intergenic | 65.0% | |
| GTGCCGAGCTCCTTAGGGAC+AGG | + | chr4.4:67299892-67299911 | MS.gene77677:CDS | 65.0% | |
| TGTCGCGTCGTGTCCGACAC+CGG | + | chr4.4:67298495-67298514 | MS.gene77677:intron | 65.0% | |
| GTCGCGTCGTGTCCGACACC+GGG | + | chr4.4:67298496-67298515 | MS.gene77677:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 67297581 | 67301073 | 67297581 | ID=MS.gene77677 |
| chr4.4 | mRNA | 67297581 | 67301073 | 67297581 | ID=MS.gene77677.t1;Parent=MS.gene77677 |
| chr4.4 | exon | 67297581 | 67297828 | 67297581 | ID=MS.gene77677.t1.exon1;Parent=MS.gene77677.t1 |
| chr4.4 | CDS | 67297581 | 67297828 | 67297581 | ID=cds.MS.gene77677.t1;Parent=MS.gene77677.t1 |
| chr4.4 | exon | 67299872 | 67300088 | 67299872 | ID=MS.gene77677.t1.exon2;Parent=MS.gene77677.t1 |
| chr4.4 | CDS | 67299872 | 67300088 | 67299872 | ID=cds.MS.gene77677.t1;Parent=MS.gene77677.t1 |
| chr4.4 | exon | 67300409 | 67300502 | 67300409 | ID=MS.gene77677.t1.exon3;Parent=MS.gene77677.t1 |
| chr4.4 | CDS | 67300409 | 67300502 | 67300409 | ID=cds.MS.gene77677.t1;Parent=MS.gene77677.t1 |
| chr4.4 | exon | 67300796 | 67301073 | 67300796 | ID=MS.gene77677.t1.exon4;Parent=MS.gene77677.t1 |
| chr4.4 | CDS | 67300796 | 67301073 | 67300796 | ID=cds.MS.gene77677.t1;Parent=MS.gene77677.t1 |
| Gene Sequence |
| Protein sequence |
