Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77870.t1 | XP_003599450.3 | 94.7 | 580 | 24 | 2 | 1 | 573 | 1 | 580 | 1.50E-251 | 878.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77870.t1 | Q4PIP8 | 21.8 | 435 | 273 | 12 | 148 | 536 | 89 | 502 | 4.0e-14 | 81.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77870.t1 | A0A396ITU0 | 94.7 | 580 | 24 | 2 | 1 | 573 | 1 | 580 | 1.1e-251 | 878.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene77870 | 0.841495 | 4.59E-58 | -1.69E-46 |
| MS.gene049435 | MS.gene77870 | 0.811667 | 6.24E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene77870 | 0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene77870 | 0.823668 | 1.22E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene77870 | 0.826164 | 3.15E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene77870 | 0.819263 | 1.27E-52 | -1.69E-46 |
| MS.gene050759 | MS.gene77870 | 0.847897 | 8.65E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene77870 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene77870 | 0.81955 | 1.10E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene77870 | 0.84356 | 1.30E-58 | -1.69E-46 |
| MS.gene051180 | MS.gene77870 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene77870 | 0.819978 | 8.74E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene77870 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene77870 | 0.804691 | 1.91E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene77870 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene77870 | 0.827076 | 1.91E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene77870 | 0.821329 | 4.28E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene77870 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene77870 | 0.835524 | 1.60E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene77870 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene77870 | 0.810837 | 9.45E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene77870 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene77870 | 0.806377 | 8.47E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene77870 | 0.812445 | 4.22E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene77870 | 0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene055222 | MS.gene77870 | 0.802768 | 4.80E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene77870 | 0.863536 | 2.32E-64 | -1.69E-46 |
| MS.gene056181 | MS.gene77870 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene05761 | MS.gene77870 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene77870 | 0.811378 | 7.21E-51 | -1.69E-46 |
| MS.gene059283 | MS.gene77870 | 0.823012 | 1.74E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene77870 | 0.81564 | 8.34E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene77870 | -0.811999 | 5.29E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene77870 | 0.806534 | 7.85E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene77870 | 0.841949 | 3.48E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene77870 | 0.876201 | 1.69E-68 | -1.69E-46 |
| MS.gene060803 | MS.gene77870 | 0.857037 | 2.14E-62 | -1.69E-46 |
| MS.gene060932 | MS.gene77870 | 0.800414 | 1.46E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene77870 | 0.802739 | 4.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77870.t1 | MTR_3g033520 | 91.897 | 580 | 39 | 3 | 1 | 573 | 1 | 579 | 0.0 | 1016 |
| MS.gene77870.t1 | MTR_3g033520 | 93.036 | 560 | 37 | 1 | 16 | 573 | 1 | 560 | 0.0 | 995 |
| MS.gene77870.t1 | MTR_7g086710 | 31.264 | 435 | 287 | 5 | 120 | 548 | 14 | 442 | 2.21e-67 | 226 |
| MS.gene77870.t1 | MTR_5g054780 | 28.247 | 308 | 183 | 7 | 255 | 536 | 150 | 445 | 1.46e-30 | 125 |
| MS.gene77870.t1 | MTR_6g027560 | 34.066 | 182 | 93 | 2 | 373 | 553 | 78 | 233 | 4.64e-29 | 115 |
| MS.gene77870.t1 | MTR_1g111330 | 27.922 | 308 | 184 | 7 | 255 | 536 | 156 | 451 | 4.70e-29 | 121 |
| MS.gene77870.t1 | MTR_1g111330 | 28.000 | 200 | 122 | 4 | 255 | 436 | 156 | 351 | 3.91e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77870.t1 | AT5G13760 | 59.437 | 604 | 171 | 7 | 1 | 568 | 1 | 566 | 0.0 | 707 |
| MS.gene77870.t1 | AT3G03700 | 29.258 | 458 | 294 | 10 | 118 | 564 | 36 | 474 | 5.09e-57 | 199 |
| MS.gene77870.t1 | AT3G04440 | 29.258 | 458 | 294 | 10 | 118 | 564 | 36 | 474 | 5.15e-57 | 199 |
| MS.gene77870.t1 | AT3G04440 | 29.476 | 458 | 293 | 10 | 118 | 564 | 13 | 451 | 7.03e-57 | 198 |
| MS.gene77870.t1 | AT5G17830 | 26.840 | 462 | 287 | 12 | 126 | 558 | 20 | 459 | 4.00e-37 | 144 |
| MS.gene77870.t1 | AT5G17830 | 27.990 | 418 | 267 | 11 | 155 | 558 | 41 | 438 | 6.86e-36 | 140 |
| MS.gene77870.t1 | AT1G25500 | 25.338 | 296 | 206 | 4 | 256 | 536 | 157 | 452 | 2.22e-18 | 88.6 |
| MS.gene77870.t1 | AT1G25500 | 25.338 | 296 | 206 | 4 | 256 | 536 | 99 | 394 | 4.16e-18 | 87.4 |
| MS.gene77870.t1 | AT1G25500 | 28.571 | 203 | 128 | 4 | 295 | 480 | 68 | 270 | 1.89e-15 | 77.8 |
Find 119 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATTCAAATCACTGAATT+TGG | 0.146968 | 3.4:-25451456 | None:intergenic |
| CCATGTCTTCCTTCTCAAAT+AGG | 0.235190 | 3.4:-25452686 | None:intergenic |
| CACCGTCGGTTGGAGGCTTT+TGG | 0.251711 | 3.4:-25451322 | None:intergenic |
| GGAAGAAGGGTTAAGGGATT+TGG | 0.258383 | 3.4:+25450006 | MS.gene77870:CDS |
| GAATCTTGGAAGTGCTTGTT+TGG | 0.268610 | 3.4:+25451721 | MS.gene77870:CDS |
| ATTCTTCATTGGATACCTTT+TGG | 0.272961 | 3.4:+25452848 | MS.gene77870:CDS |
| GGCAAGGTGCAATTAGAAAA+TGG | 0.286876 | 3.4:+25451222 | MS.gene77870:CDS |
| TGAGAGCGTTGAGATTTCTT+AGG | 0.291686 | 3.4:-25450229 | None:intergenic |
| TTGTTAATATAACGGTTAGT+AGG | 0.320823 | 3.4:+25451627 | MS.gene77870:CDS |
| CAAGAGCGATCGCTAGTAAT+TGG | 0.332002 | 3.4:-25451058 | None:intergenic |
| GATTCTTGTGGATATCTATA+TGG | 0.332920 | 3.4:+25451504 | MS.gene77870:CDS |
| GCGATTGGCAATGGCTTATA+TGG | 0.341710 | 3.4:+25451368 | MS.gene77870:CDS |
| GGTTGTTGTGGTGGTGGTGG+TGG | 0.349063 | 3.4:-25450307 | None:intergenic |
| AATCTTGGAAGTGCTTGTTT+GGG | 0.354656 | 3.4:+25451722 | MS.gene77870:CDS |
| TGTTGCGCTCGTTGTTGTTT+GGG | 0.356549 | 3.4:+25451830 | MS.gene77870:CDS |
| ATTGGTGCTGGTGTTGGTAT+TGG | 0.356830 | 3.4:-25450271 | None:intergenic |
| ATTCTCAGCGCTTCAATTGT+TGG | 0.359023 | 3.4:-25451758 | None:intergenic |
| CATCGCATTAGTGTTGAGTT+TGG | 0.360394 | 3.4:+25451577 | MS.gene77870:CDS |
| TCTTTACTCACATTCTTCAT+TGG | 0.361425 | 3.4:+25452837 | MS.gene77870:CDS |
| GAAAGAAGGAAGAAGGGTTA+AGG | 0.363593 | 3.4:+25449999 | MS.gene77870:CDS |
| ACAATCCTCAAAGGGTTAGT+AGG | 0.380125 | 3.4:-25450169 | None:intergenic |
| TTGTTGCGCTCGTTGTTGTT+TGG | 0.382253 | 3.4:+25451829 | MS.gene77870:CDS |
| ATATGGACTTTAGCAGTAGT+TGG | 0.409273 | 3.4:+25451521 | MS.gene77870:CDS |
| GGTGGTTGTTGTGGTGGTGG+TGG | 0.409681 | 3.4:-25450310 | None:intergenic |
| GTTATATCAGCATCTACTAT+TGG | 0.412428 | 3.4:-25452711 | None:intergenic |
| GAGGAATGTTGTTAATATAA+CGG | 0.414847 | 3.4:+25451619 | MS.gene77870:CDS |
| TAAACCCTACTAACCCTTTG+AGG | 0.414943 | 3.4:+25450164 | MS.gene77870:CDS |
| GGGTTAAGGGATTTGGAGAA+AGG | 0.415418 | 3.4:+25450013 | MS.gene77870:CDS |
| AGAGCGTTGACTCGGAATCT+TGG | 0.415922 | 3.4:+25451707 | MS.gene77870:CDS |
| GGTGGTTGTGGAGTTTGAAT+TGG | 0.416842 | 3.4:-25450289 | None:intergenic |
| CAGATTCTTGTACTAGTCCT+TGG | 0.419684 | 3.4:-25451106 | None:intergenic |
| ACTTATTACATGCTTGCGGC+TGG | 0.420144 | 3.4:+25451482 | MS.gene77870:CDS |
| TGTGGAGTTTGAATTGGTGC+TGG | 0.421714 | 3.4:-25450283 | None:intergenic |
| AAAGAAGGAAGAAGGGTTAA+GGG | 0.426076 | 3.4:+25450000 | MS.gene77870:CDS |
| CTTGGACCACAGAGGTTATG+AGG | 0.433740 | 3.4:+25451600 | MS.gene77870:CDS |
| GTGTTATTGTTGTAGCTGCT+TGG | 0.447472 | 3.4:+25452778 | MS.gene77870:CDS |
| TAAAACAATTAAAGATCGTC+AGG | 0.449254 | 3.4:+25453435 | MS.gene77870:CDS |
| ATGAAGGGTATAATGTTTCA+AGG | 0.451587 | 3.4:+25450131 | MS.gene77870:CDS |
| CATTAGTGTTGAGTTTGGCT+TGG | 0.452587 | 3.4:+25451582 | MS.gene77870:CDS |
| CGTTGAGATTTCTTAGGAGG+AGG | 0.452943 | 3.4:-25450223 | None:intergenic |
| TTTCAGAAATGGCAATAGTT+GGG | 0.457931 | 3.4:+25451868 | MS.gene77870:CDS |
| GCAATGGCTTATATGGTTGT+TGG | 0.459009 | 3.4:+25451375 | MS.gene77870:CDS |
| CATGTCTTCCTTCTCAAATA+GGG | 0.466916 | 3.4:-25452685 | None:intergenic |
| CAAGGACTAGTACAAGAATC+TGG | 0.467966 | 3.4:+25451107 | MS.gene77870:CDS |
| TGTGGTGGTTGTTGTGGTGG+TGG | 0.470415 | 3.4:-25450313 | None:intergenic |
| TGTTAATATAACGGTTAGTA+GGG | 0.478570 | 3.4:+25451628 | MS.gene77870:CDS |
| AGCTCAATTTGCTTCCTCAC+AGG | 0.480823 | 3.4:+25452735 | MS.gene77870:CDS |
| GTTTGAATTGGTGCTGGTGT+TGG | 0.482355 | 3.4:-25450277 | None:intergenic |
| GATGATGGAAAGAAGGAAGA+AGG | 0.493045 | 3.4:+25449992 | MS.gene77870:CDS |
| AAAGATGGATGATGGAAAGA+AGG | 0.495208 | 3.4:+25449985 | MS.gene77870:CDS |
| CTTCTTGAATTAAGTGTCAC+CGG | 0.495904 | 3.4:-25450996 | None:intergenic |
| TGAAGAATGTGAGTAAAGAC+AGG | 0.496211 | 3.4:-25452833 | None:intergenic |
| TTGTGATGTCTCTTGCAGCC+GGG | 0.496627 | 3.4:+25451282 | MS.gene77870:CDS |
| AAGAATCTGGTTCTGTTAAG+AGG | 0.500285 | 3.4:+25451120 | MS.gene77870:CDS |
| GACTTAGAAGATATACTTCA+AGG | 0.502776 | 3.4:+25453503 | MS.gene77870:CDS |
| CAATCCTCAAAGGGTTAGTA+GGG | 0.503463 | 3.4:-25450168 | None:intergenic |
| CTTGTGTTCAAGGGAGTCCA+AGG | 0.503627 | 3.4:+25451089 | MS.gene77870:CDS |
| TCGTAACAGATTGCAGCCTA+TGG | 0.505427 | 3.4:+25452627 | MS.gene77870:intron |
| CAGATTGCAGCCTATGGAAG+AGG | 0.505751 | 3.4:+25452633 | MS.gene77870:intron |
| CAATAGTTGGGCATATGTAC+AGG | 0.512027 | 3.4:+25451880 | MS.gene77870:CDS |
| GGAGCTAGAAAGATGGATGA+TGG | 0.512342 | 3.4:+25449977 | MS.gene77870:CDS |
| TGCTGGTGTTGGTATTGGAA+TGG | 0.515943 | 3.4:-25450266 | None:intergenic |
| CTATTCATCACAATCCTCAA+AGG | 0.517811 | 3.4:-25450178 | None:intergenic |
| GAGCGTTGAGATTTCTTAGG+AGG | 0.523480 | 3.4:-25450226 | None:intergenic |
| CATACCTGTGGTGGTTGTTG+TGG | 0.523510 | 3.4:-25450319 | None:intergenic |
| AAGCGCTGAGAATTGTTGCT+AGG | 0.526914 | 3.4:+25451768 | MS.gene77870:CDS |
| GCTTTCTGAGAGCGTTGACT+CGG | 0.527234 | 3.4:+25451699 | MS.gene77870:CDS |
| AAGTGAAGGAGCTAGAAAGA+TGG | 0.528600 | 3.4:+25449970 | MS.gene77870:CDS |
| TTTGTGATGTCTCTTGCAGC+CGG | 0.528803 | 3.4:+25451281 | MS.gene77870:CDS |
| TTCCTCACAGGAGTTTGTAG+TGG | 0.532054 | 3.4:+25452747 | MS.gene77870:CDS |
| TGAGATTTCTTAGGAGGAGG+AGG | 0.532542 | 3.4:-25450220 | None:intergenic |
| TATTCATCACAATCCTCAAA+GGG | 0.536329 | 3.4:-25450177 | None:intergenic |
| GAGAATGTTGCTCATGGTCA+TGG | 0.538173 | 3.4:+25450094 | MS.gene77870:CDS |
| TGCTTGCGGCTGGATTCTTG+TGG | 0.540887 | 3.4:+25451492 | MS.gene77870:CDS |
| GTATATCTTCTAAGTCCCCT+TGG | 0.542647 | 3.4:-25453496 | None:intergenic |
| ACACCAACACCGTCGGTTGG+AGG | 0.545410 | 3.4:-25451329 | None:intergenic |
| CTTCTAAGTCCCCTTGGTGT+AGG | 0.546621 | 3.4:-25453490 | None:intergenic |
| ACCTGTGGTGGTTGTTGTGG+TGG | 0.548767 | 3.4:-25450316 | None:intergenic |
| AAAGTTGCAGCTTCCACTTG+TGG | 0.550103 | 3.4:-25451173 | None:intergenic |
| ATCGCGTTGTATTACTTGAG+AGG | 0.553720 | 3.4:+25451653 | MS.gene77870:CDS |
| AGCGCTGAGAATTGTTGCTA+GGG | 0.557666 | 3.4:+25451769 | MS.gene77870:CDS |
| ATGATGGAAAGAAGGAAGAA+GGG | 0.557742 | 3.4:+25449993 | MS.gene77870:CDS |
| AAGCCTCCAACCGACGGTGT+TGG | 0.558221 | 3.4:+25451326 | MS.gene77870:CDS |
| ATCTTGGAAGTGCTTGTTTG+GGG | 0.569876 | 3.4:+25451723 | MS.gene77870:CDS |
| GAGCGATCGCTAGTAATTGG+TGG | 0.573202 | 3.4:-25451055 | None:intergenic |
| TGTGAGGAAGCAAATTGAGC+TGG | 0.579856 | 3.4:-25452733 | None:intergenic |
| GAAATTAATTACATGTTCAG+TGG | 0.579891 | 3.4:-25449819 | None:intergenic |
| TGTTAGGTGGATGAAAGTGA+AGG | 0.579987 | 3.4:+25449956 | MS.gene77870:intron |
| CATTACAAAACCTCTTCCAT+AGG | 0.590212 | 3.4:-25452643 | None:intergenic |
| GAAGCAAATAAGAAGAATCC+CGG | 0.590499 | 3.4:-25451300 | None:intergenic |
| CAAACACCAACACCGTCGGT+TGG | 0.593373 | 3.4:-25451332 | None:intergenic |
| ACCTACTTATTACATGCTTG+CGG | 0.593868 | 3.4:+25451478 | MS.gene77870:CDS |
| ACCACCACAACAACCACCAC+AGG | 0.595379 | 3.4:+25450315 | MS.gene77870:CDS |
| CACATGGTCCCTATTTGAGA+AGG | 0.599548 | 3.4:+25452677 | MS.gene77870:CDS |
| CCTATTTGAGAAGGAAGACA+TGG | 0.604555 | 3.4:+25452686 | MS.gene77870:CDS |
| TTCCAAAAGCCTCCAACCGA+CGG | 0.616758 | 3.4:+25451320 | MS.gene77870:CDS |
| AAATCACTGAATTTGGACAT+CGG | 0.616978 | 3.4:-25451449 | None:intergenic |
| TTTGCAGACTAGGATTGCAA+TGG | 0.618762 | 3.4:+25453342 | MS.gene77870:intron |
| GCCGCAAGCATGTAATAAGT+AGG | 0.626255 | 3.4:-25451479 | None:intergenic |
| ATTGGCTGTACCTACACCAA+GGG | 0.639295 | 3.4:+25453480 | MS.gene77870:CDS |
| CGCTGAGAATTGTTGCTAGG+GGG | 0.642798 | 3.4:+25451771 | MS.gene77870:CDS |
| GAAACAAACACCAACACCGT+CGG | 0.650322 | 3.4:-25451336 | None:intergenic |
| TAACAACTCACACAAGCATG+AGG | 0.654342 | 3.4:-25453370 | None:intergenic |
| GCGCTGAGAATTGTTGCTAG+GGG | 0.663147 | 3.4:+25451770 | MS.gene77870:CDS |
| GGTGGTCATGATGATCATGA+AGG | 0.663679 | 3.4:+25450115 | MS.gene77870:CDS |
| GATGTTGAGAATGTTGCTCA+TGG | 0.669928 | 3.4:+25450088 | MS.gene77870:CDS |
| GTGGAGAGCAAATATAAACA+AGG | 0.675515 | 3.4:-25451036 | None:intergenic |
| GTGGTCATGATGATCATGAA+GGG | 0.680503 | 3.4:+25450116 | MS.gene77870:CDS |
| AATTGGCTGTACCTACACCA+AGG | 0.681948 | 3.4:+25453479 | MS.gene77870:CDS |
| ACTAATGCGATGATAACCAA+AGG | 0.685584 | 3.4:-25451566 | None:intergenic |
| AACATTCCTCATAACCTCTG+TGG | 0.686877 | 3.4:-25451606 | None:intergenic |
| TAATGGCATCACAAGACACA+TGG | 0.695244 | 3.4:+25452661 | MS.gene77870:CDS |
| GAGTTTGGCTTGGACCACAG+AGG | 0.698961 | 3.4:+25451592 | MS.gene77870:CDS |
| AATGCGATGATAACCAAAGG+CGG | 0.700321 | 3.4:-25451563 | None:intergenic |
| TTGGCTGTACCTACACCAAG+GGG | 0.705525 | 3.4:+25453481 | MS.gene77870:CDS |
| GAAGAATGTGAGTAAAGACA+GGG | 0.705854 | 3.4:-25452832 | None:intergenic |
| AGCCACTACAAACTCCTGTG+AGG | 0.724232 | 3.4:-25452749 | None:intergenic |
| AATGTTGCTCATGGTCATGG+TGG | 0.726262 | 3.4:+25450097 | MS.gene77870:CDS |
| GAATGTGAGTAAAGACAGGG+TGG | 0.767321 | 3.4:-25452829 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTGTTTAAAAAATTA+AGG | - | chr3.4:25453084-25453103 | None:intergenic | 10.0% |
| !! | ATAGATATAGTTATATTATA+TGG | - | chr3.4:25451941-25451960 | None:intergenic | 10.0% |
| !!! | AAATTTACATTTTTGTTAAA+GGG | + | chr3.4:25450592-25450611 | MS.gene77870:intron | 10.0% |
| !!! | AAATTTACTTTTTTTAGTAA+AGG | + | chr3.4:25450733-25450752 | MS.gene77870:intron | 10.0% |
| !!! | ATTTTATATAAATTAGAGTT+AGG | - | chr3.4:25453131-25453150 | None:intergenic | 10.0% |
| !!! | TAAATTATTTTAAAAATCCA+AGG | - | chr3.4:25453052-25453071 | None:intergenic | 10.0% |
| !!! | TACTTTAATTTTTTCAAAAT+GGG | + | chr3.4:25449872-25449891 | MS.gene77870:intron | 10.0% |
| !!! | TTTTTAAACAATTTGTATTT+GGG | + | chr3.4:25453088-25453107 | MS.gene77870:intron | 10.0% |
| !!! | TTTTTTAAACAATTTGTATT+TGG | + | chr3.4:25453087-25453106 | MS.gene77870:intron | 10.0% |
| !! | ATAAAATGAACCATAAAAAT+TGG | - | chr3.4:25451248-25451267 | None:intergenic | 15.0% |
| !! | CATTAAAAGATATGAAAAAA+TGG | - | chr3.4:25452892-25452911 | None:intergenic | 15.0% |
| !!! | ACAAAGATTGTAATTTTTTA+AGG | + | chr3.4:25450904-25450923 | MS.gene77870:intron | 15.0% |
| !!! | AGATTAAAATTTTACACAAA+TGG | - | chr3.4:25449904-25449923 | None:intergenic | 15.0% |
| !!! | CAAAGATTGTAATTTTTTAA+GGG | + | chr3.4:25450905-25450924 | MS.gene77870:intron | 15.0% |
| !!! | CATTTTTTCATATCTTTTAA+TGG | + | chr3.4:25452890-25452909 | MS.gene77870:intron | 15.0% |
| !!! | CTACTTTAATTTTTTCAAAA+TGG | + | chr3.4:25449871-25449890 | MS.gene77870:intron | 15.0% |
| !!! | GAAATTTACATTTTTGTTAA+AGG | + | chr3.4:25450591-25450610 | MS.gene77870:intron | 15.0% |
| !!! | GACTATTATAATTAATTTTC+TGG | + | chr3.4:25451965-25451984 | MS.gene77870:intron | 15.0% |
| !!! | TTAGTAGTTTAGTTTTATTT+GGG | - | chr3.4:25453162-25453181 | None:intergenic | 15.0% |
| !!! | TTATTTTTATTTTTGGTAAG+TGG | + | chr3.4:25450810-25450829 | MS.gene77870:intron | 15.0% |
| !!! | TTTTTTTTGTTGTTTTTGTT+AGG | + | chr3.4:25449940-25449959 | MS.gene77870:intron | 15.0% |
| !! | AAAAATCACAAATTAAGTCA+GGG | - | chr3.4:25452939-25452958 | None:intergenic | 20.0% |
| !! | ATAATGTCTTTAAGTAGTTA+AGG | + | chr3.4:25453228-25453247 | MS.gene77870:intron | 20.0% |
| !! | ATGAAAAAATGGTCAAATAA+GGG | - | chr3.4:25452881-25452900 | None:intergenic | 20.0% |
| !! | GTTAGGTAACTTAAAATAAT+TGG | - | chr3.4:25452592-25452611 | None:intergenic | 20.0% |
| !! | TAAAAATCACAAATTAAGTC+AGG | - | chr3.4:25452940-25452959 | None:intergenic | 20.0% |
| !! | TAAATTTACATGTGTTCATT+TGG | + | chr3.4:25450881-25450900 | MS.gene77870:intron | 20.0% |
| !! | TAATGTCTTTAAGTAGTTAA+GGG | + | chr3.4:25453229-25453248 | MS.gene77870:intron | 20.0% |
| !! | TATGAAAAAATGGTCAAATA+AGG | - | chr3.4:25452882-25452901 | None:intergenic | 20.0% |
| !!! | ATCATAGTAAAATGTGATTT+TGG | - | chr3.4:25452205-25452224 | None:intergenic | 20.0% |
| !!! | GATCAATTCAAATTTAAGTT+AGG | - | chr3.4:25452609-25452628 | None:intergenic | 20.0% |
| !!! | GTTAGTAGTTTAGTTTTATT+TGG | - | chr3.4:25453163-25453182 | None:intergenic | 20.0% |
| !!! | TAAACTACTAACCAAATTTT+GGG | + | chr3.4:25453171-25453190 | MS.gene77870:intron | 20.0% |
| !!! | TTAGTTGTTTTCTTTGTAAT+GGG | + | chr3.4:25450666-25450685 | MS.gene77870:intron | 20.0% |
| !!! | TTATGGTTCATTTTATACTT+TGG | + | chr3.4:25451252-25451271 | MS.gene77870:CDS | 20.0% |
| !!! | TTTAGTTGTTTTCTTTGTAA+TGG | + | chr3.4:25450665-25450684 | MS.gene77870:intron | 20.0% |
| !!! | TTTTTTGTTAATGTGTTAAG+AGG | + | chr3.4:25450519-25450538 | MS.gene77870:intron | 20.0% |
| ! | AGGTAACTTAAAATAATTGG+TGG | - | chr3.4:25452589-25452608 | None:intergenic | 25.0% |
| ! | ATCAAATAAACACATGAATG+AGG | - | chr3.4:25452355-25452374 | None:intergenic | 25.0% |
| ! | ATGAACAGTTGATTAGTATT+TGG | + | chr3.4:25451914-25451933 | MS.gene77870:intron | 25.0% |
| ! | ATGACAACAAATTTGAAAGA+CGG | - | chr3.4:25452543-25452562 | None:intergenic | 25.0% |
| ! | CGGTTAAAAAAAATTAGTTC+GGG | - | chr3.4:25453026-25453045 | None:intergenic | 25.0% |
| ! | GAAATTAATTACATGTTCAG+TGG | - | chr3.4:25449822-25449841 | None:intergenic | 25.0% |
| ! | GAGGAATGTTGTTAATATAA+CGG | + | chr3.4:25451619-25451638 | MS.gene77870:CDS | 25.0% |
| ! | GCGGTTAAAAAAAATTAGTT+CGG | - | chr3.4:25453027-25453046 | None:intergenic | 25.0% |
| ! | GTGAACTAATAATAGAAAAC+TGG | - | chr3.4:25453273-25453292 | None:intergenic | 25.0% |
| ! | TAAAACAATTAAAGATCGTC+AGG | + | chr3.4:25453435-25453454 | MS.gene77870:CDS | 25.0% |
| ! | TCAAATAAACACATGAATGA+GGG | - | chr3.4:25452354-25452373 | None:intergenic | 25.0% |
| ! | TGAAAAAATGGTCAAATAAG+GGG | - | chr3.4:25452880-25452899 | None:intergenic | 25.0% |
| ! | TGTTAATATAACGGTTAGTA+GGG | + | chr3.4:25451628-25451647 | MS.gene77870:CDS | 25.0% |
| ! | TTGTTAATATAACGGTTAGT+AGG | + | chr3.4:25451627-25451646 | MS.gene77870:CDS | 25.0% |
| ! | TTGTTGAATTCAAATACTTG+AGG | + | chr3.4:25450770-25450789 | MS.gene77870:intron | 25.0% |
| !! | AACTGGTTTAATTACAATGT+AGG | - | chr3.4:25453256-25453275 | None:intergenic | 25.0% |
| !! | ATGCAATCAATTTTCAGAAA+TGG | + | chr3.4:25451857-25451876 | MS.gene77870:CDS | 25.0% |
| !! | CTAAACTACTAACCAAATTT+TGG | + | chr3.4:25453170-25453189 | MS.gene77870:intron | 25.0% |
| !! | TAGAAAATGGCCAATTTTTA+TGG | + | chr3.4:25451235-25451254 | MS.gene77870:CDS | 25.0% |
| !! | TGACTTTAAAAAAAAATCCG+TGG | + | chr3.4:25452175-25452194 | MS.gene77870:intron | 25.0% |
| !! | TTATCAAACAATCTGTTTTC+TGG | - | chr3.4:25453418-25453437 | None:intergenic | 25.0% |
| !!! | AAAGTATTGACATGAACAAT+GGG | - | chr3.4:25450475-25450494 | None:intergenic | 25.0% |
| !!! | CACATAGTTATTTTTCGTAT+TGG | - | chr3.4:25452402-25452421 | None:intergenic | 25.0% |
| !!! | GCATAATTCTTGCTTTTTTT+TGG | + | chr3.4:25451201-25451220 | MS.gene77870:CDS | 25.0% |
| !!! | TAAAGTATTGACATGAACAA+TGG | - | chr3.4:25450476-25450495 | None:intergenic | 25.0% |
| !!! | TTGTTCATGTCAGTTTTTTT+TGG | + | chr3.4:25450394-25450413 | MS.gene77870:intron | 25.0% |
| !!! | TTTTTGTTGTTTTTGTTAGG+TGG | + | chr3.4:25449943-25449962 | MS.gene77870:intron | 25.0% |
| AAATCACTGAATTTGGACAT+CGG | - | chr3.4:25451452-25451471 | None:intergenic | 30.0% | |
| AACAAATTTGAAAGACGGTA+GGG | - | chr3.4:25452538-25452557 | None:intergenic | 30.0% | |
| AACCATTAGCTGTAAAAATG+CGG | - | chr3.4:25452276-25452295 | None:intergenic | 30.0% | |
| AAGAAAAAGAAACATACCTG+TGG | - | chr3.4:25450334-25450353 | None:intergenic | 30.0% | |
| AGCTCAATTGAATTGAAGTA+AGG | - | chr3.4:25450446-25450465 | None:intergenic | 30.0% | |
| GACTTAGAAGATATACTTCA+AGG | + | chr3.4:25453503-25453522 | MS.gene77870:CDS | 30.0% | |
| GATTCTTGTGGATATCTATA+TGG | + | chr3.4:25451504-25451523 | MS.gene77870:CDS | 30.0% | |
| GTTATATCAGCATCTACTAT+TGG | - | chr3.4:25452714-25452733 | None:intergenic | 30.0% | |
| TACGTTTATTATGGAATCCT+CGG | + | chr3.4:25452306-25452325 | MS.gene77870:intron | 30.0% | |
| TATTCATCACAATCCTCAAA+GGG | - | chr3.4:25450180-25450199 | None:intergenic | 30.0% | |
| TCGATTCAAATCACTGAATT+TGG | - | chr3.4:25451459-25451478 | None:intergenic | 30.0% | |
| TCTTTACTCACATTCTTCAT+TGG | + | chr3.4:25452837-25452856 | MS.gene77870:CDS | 30.0% | |
| TGTAATTGAGTCCCAAAATT+TGG | - | chr3.4:25453185-25453204 | None:intergenic | 30.0% | |
| TTGAGTATATGTTGAACACT+CGG | + | chr3.4:25452376-25452395 | MS.gene77870:intron | 30.0% | |
| TTTCAGAAATGGCAATAGTT+GGG | + | chr3.4:25451868-25451887 | MS.gene77870:CDS | 30.0% | |
| ! | ATGAAGGGTATAATGTTTCA+AGG | + | chr3.4:25450131-25450150 | MS.gene77870:CDS | 30.0% |
| ! | ATTCTTCATTGGATACCTTT+TGG | + | chr3.4:25452848-25452867 | MS.gene77870:CDS | 30.0% |
| ! | CATTTTTACAGCTAATGGTT+TGG | + | chr3.4:25452276-25452295 | MS.gene77870:intron | 30.0% |
| ! | TTTTCAGAAATGGCAATAGT+TGG | + | chr3.4:25451867-25451886 | MS.gene77870:CDS | 30.0% |
| ! | TTTTTGTTAAAGGGTTATGC+AGG | + | chr3.4:25450601-25450620 | MS.gene77870:intron | 30.0% |
| !! | ATTTGGGTTTCTAAAGTTCA+AGG | + | chr3.4:25453104-25453123 | MS.gene77870:intron | 30.0% |
| !! | ATTTTAAAAATCCAAGGACG+CGG | - | chr3.4:25453046-25453065 | None:intergenic | 30.0% |
| !!! | ATTCTTGCTTTTTTTTGGCA+AGG | + | chr3.4:25451206-25451225 | MS.gene77870:CDS | 30.0% |
| AAAAAGAAACATACCTGTGG+TGG | - | chr3.4:25450331-25450350 | None:intergenic | 35.0% | |
| AAAGAAGGAAGAAGGGTTAA+GGG | + | chr3.4:25450000-25450019 | MS.gene77870:CDS | 35.0% | |
| ACCTACTTATTACATGCTTG+CGG | + | chr3.4:25451478-25451497 | MS.gene77870:CDS | 35.0% | |
| ACGTTTATTATGGAATCCTC+GGG | + | chr3.4:25452307-25452326 | MS.gene77870:intron | 35.0% | |
| ACTAATGCGATGATAACCAA+AGG | - | chr3.4:25451569-25451588 | None:intergenic | 35.0% | |
| ATATGGACTTTAGCAGTAGT+TGG | + | chr3.4:25451521-25451540 | MS.gene77870:CDS | 35.0% | |
| CAACAAATTTGAAAGACGGT+AGG | - | chr3.4:25452539-25452558 | None:intergenic | 35.0% | |
| CATGTCTTCCTTCTCAAATA+GGG | - | chr3.4:25452688-25452707 | None:intergenic | 35.0% | |
| CATTACAAAACCTCTTCCAT+AGG | - | chr3.4:25452646-25452665 | None:intergenic | 35.0% | |
| CTATTCATCACAATCCTCAA+AGG | - | chr3.4:25450181-25450200 | None:intergenic | 35.0% | |
| CTTCTTGAATTAAGTGTCAC+CGG | - | chr3.4:25450999-25451018 | None:intergenic | 35.0% | |
| GAAGAATGTGAGTAAAGACA+GGG | - | chr3.4:25452835-25452854 | None:intergenic | 35.0% | |
| GAAGCAAATAAGAAGAATCC+CGG | - | chr3.4:25451303-25451322 | None:intergenic | 35.0% | |
| GGCTATGAGTACGTTTATTA+TGG | + | chr3.4:25452297-25452316 | MS.gene77870:intron | 35.0% | |
| GGTATATGAGTGCAAATTGT+TGG | + | chr3.4:25451986-25452005 | MS.gene77870:intron | 35.0% | |
| GTGGAGAGCAAATATAAACA+AGG | - | chr3.4:25451039-25451058 | None:intergenic | 35.0% | |
| GTTAAAAACTGGTCGTGAAT+TGG | + | chr3.4:25453462-25453481 | MS.gene77870:CDS | 35.0% | |
| GTTTGTCTACTATGCTATGT+AGG | + | chr3.4:25452912-25452931 | MS.gene77870:intron | 35.0% | |
| TGAAGAATGTGAGTAAAGAC+AGG | - | chr3.4:25452836-25452855 | None:intergenic | 35.0% | |
| TTTCGGATTATGTGATCTGT+TGG | + | chr3.4:25452494-25452513 | MS.gene77870:intron | 35.0% | |
| ! | AATGTGATTTTGGATGACCA+CGG | - | chr3.4:25452195-25452214 | None:intergenic | 35.0% |
| ! | ATCCGCATTTTTACAGCTAA+TGG | + | chr3.4:25452271-25452290 | MS.gene77870:intron | 35.0% |
| ! | ATGATGGAAAGAAGGAAGAA+GGG | + | chr3.4:25449993-25450012 | MS.gene77870:CDS | 35.0% |
| ! | CATCGAACTCTTTTCTGTTT+CGG | + | chr3.4:25452477-25452496 | MS.gene77870:intron | 35.0% |
| ! | CTATGTGACTTCGATTTGAT+TGG | + | chr3.4:25452415-25452434 | MS.gene77870:intron | 35.0% |
| ! | GATGTATTTTCTTCCACAAG+TGG | + | chr3.4:25451160-25451179 | MS.gene77870:CDS | 35.0% |
| ! | GTGTGTTTTCTTGTGTTCAA+GGG | + | chr3.4:25451080-25451099 | MS.gene77870:CDS | 35.0% |
| ! | TGTGTGTTTTCTTGTGTTCA+AGG | + | chr3.4:25451079-25451098 | MS.gene77870:CDS | 35.0% |
| ! | TTCATTGGATACCTTTTGGT+TGG | + | chr3.4:25452852-25452871 | MS.gene77870:intron | 35.0% |
| !! | AAAGATGGATGATGGAAAGA+AGG | + | chr3.4:25449985-25450004 | MS.gene77870:CDS | 35.0% |
| !! | AAGAATCTGGTTCTGTTAAG+AGG | + | chr3.4:25451120-25451139 | MS.gene77870:CDS | 35.0% |
| !! | AATCTTGGAAGTGCTTGTTT+GGG | + | chr3.4:25451722-25451741 | MS.gene77870:CDS | 35.0% |
| !! | CTATGGAAGAGGTTTTGTAA+TGG | + | chr3.4:25452644-25452663 | MS.gene77870:CDS | 35.0% |
| !! | TGTTTCATTGCTTTTGCGAT+TGG | + | chr3.4:25451353-25451372 | MS.gene77870:CDS | 35.0% |
| !! | TTCTTTGTAATGGGTAACGA+GGG | + | chr3.4:25450675-25450694 | MS.gene77870:intron | 35.0% |
| !! | TTTCTTTGTAATGGGTAACG+AGG | + | chr3.4:25450674-25450693 | MS.gene77870:intron | 35.0% |
| !! | TTTTTGGTAAGTGGCTATGA+GGG | + | chr3.4:25450819-25450838 | MS.gene77870:intron | 35.0% |
| !!! | ACTTGTTGATTTTGCAGACT+AGG | + | chr3.4:25453332-25453351 | MS.gene77870:intron | 35.0% |
| !!! | ATTTTTGGTAAGTGGCTATG+AGG | + | chr3.4:25450818-25450837 | MS.gene77870:intron | 35.0% |
| !!! | ATTTTTTTTAACCGCGTCCT+TGG | + | chr3.4:25453032-25453051 | MS.gene77870:intron | 35.0% |
| !!! | GAACTTTTATTTTCCGCCTT+TGG | + | chr3.4:25451550-25451569 | MS.gene77870:CDS | 35.0% |
| !!! | TTCATTTTTTCAGCAGCAAC+CGG | + | chr3.4:25450977-25450996 | MS.gene77870:intron | 35.0% |
| AACATTCCTCATAACCTCTG+TGG | - | chr3.4:25451609-25451628 | None:intergenic | 40.0% | |
| AAGTGAAGGAGCTAGAAAGA+TGG | + | chr3.4:25449970-25449989 | MS.gene77870:CDS | 40.0% | |
| AATGCGATGATAACCAAAGG+CGG | - | chr3.4:25451566-25451585 | None:intergenic | 40.0% | |
| ACACATGAATGAGGGAAATG+TGG | - | chr3.4:25452346-25452365 | None:intergenic | 40.0% | |
| ATCGCGTTGTATTACTTGAG+AGG | + | chr3.4:25451653-25451672 | MS.gene77870:CDS | 40.0% | |
| ATTCTCAGCGCTTCAATTGT+TGG | - | chr3.4:25451761-25451780 | None:intergenic | 40.0% | |
| CAATAGTTGGGCATATGTAC+AGG | + | chr3.4:25451880-25451899 | MS.gene77870:CDS | 40.0% | |
| CAGATTCTTGTACTAGTCCT+TGG | - | chr3.4:25451109-25451128 | None:intergenic | 40.0% | |
| CCATGTCTTCCTTCTCAAAT+AGG | - | chr3.4:25452689-25452708 | None:intergenic | 40.0% | |
| CCTATTTGAGAAGGAAGACA+TGG | + | chr3.4:25452686-25452705 | MS.gene77870:CDS | 40.0% | |
| CGGTAGGGTCAATGTAATAA+AGG | - | chr3.4:25452523-25452542 | None:intergenic | 40.0% | |
| GAAAGAAGGAAGAAGGGTTA+AGG | + | chr3.4:25449999-25450018 | MS.gene77870:CDS | 40.0% | |
| GATGTTGAGAATGTTGCTCA+TGG | + | chr3.4:25450088-25450107 | MS.gene77870:CDS | 40.0% | |
| GCAATGGCTTATATGGTTGT+TGG | + | chr3.4:25451375-25451394 | MS.gene77870:CDS | 40.0% | |
| GGCAAGGTGCAATTAGAAAA+TGG | + | chr3.4:25451222-25451241 | MS.gene77870:CDS | 40.0% | |
| GTATATCTTCTAAGTCCCCT+TGG | - | chr3.4:25453499-25453518 | None:intergenic | 40.0% | |
| GTGGTCATGATGATCATGAA+GGG | + | chr3.4:25450116-25450135 | MS.gene77870:CDS | 40.0% | |
| TAAACCCTACTAACCCTTTG+AGG | + | chr3.4:25450164-25450183 | MS.gene77870:CDS | 40.0% | |
| TAACAACTCACACAAGCATG+AGG | - | chr3.4:25453373-25453392 | None:intergenic | 40.0% | |
| TAATGGCATCACAAGACACA+TGG | + | chr3.4:25452661-25452680 | MS.gene77870:CDS | 40.0% | |
| TGTTAGGTGGATGAAAGTGA+AGG | + | chr3.4:25449956-25449975 | MS.gene77870:intron | 40.0% | |
| TTTGCAGACTAGGATTGCAA+TGG | + | chr3.4:25453342-25453361 | MS.gene77870:intron | 40.0% | |
| ! | ACAATCCTCAAAGGGTTAGT+AGG | - | chr3.4:25450172-25450191 | None:intergenic | 40.0% |
| ! | CAAGGACTAGTACAAGAATC+TGG | + | chr3.4:25451107-25451126 | MS.gene77870:CDS | 40.0% |
| ! | CAATCCTCAAAGGGTTAGTA+GGG | - | chr3.4:25450171-25450190 | None:intergenic | 40.0% |
| ! | CATCGCATTAGTGTTGAGTT+TGG | + | chr3.4:25451577-25451596 | MS.gene77870:CDS | 40.0% |
| ! | CATTAGTGTTGAGTTTGGCT+TGG | + | chr3.4:25451582-25451601 | MS.gene77870:CDS | 40.0% |
| ! | GTGTTATTGTTGTAGCTGCT+TGG | + | chr3.4:25452778-25452797 | MS.gene77870:CDS | 40.0% |
| !! | AATAAGGGGTACCAACCAAA+AGG | - | chr3.4:25452866-25452885 | None:intergenic | 40.0% |
| !! | ATCTTGGAAGTGCTTGTTTG+GGG | + | chr3.4:25451723-25451742 | MS.gene77870:CDS | 40.0% |
| !! | ATTGCTTTTGCGATTGGCAA+TGG | + | chr3.4:25451359-25451378 | MS.gene77870:CDS | 40.0% |
| !! | CGTCAGGCTTTGTTAAAAAC+TGG | + | chr3.4:25453451-25453470 | MS.gene77870:CDS | 40.0% |
| !! | GAATCTTGGAAGTGCTTGTT+TGG | + | chr3.4:25451721-25451740 | MS.gene77870:CDS | 40.0% |
| !! | GATGATGGAAAGAAGGAAGA+AGG | + | chr3.4:25449992-25450011 | MS.gene77870:CDS | 40.0% |
| !! | TGAGAGCGTTGAGATTTCTT+AGG | - | chr3.4:25450232-25450251 | None:intergenic | 40.0% |
| AAAGTTGCAGCTTCCACTTG+TGG | - | chr3.4:25451176-25451195 | None:intergenic | 45.0% | |
| AATGTTGCTCATGGTCATGG+TGG | + | chr3.4:25450097-25450116 | MS.gene77870:CDS | 45.0% | |
| AATTGGCTGTACCTACACCA+AGG | + | chr3.4:25453479-25453498 | MS.gene77870:CDS | 45.0% | |
| ACTTATTACATGCTTGCGGC+TGG | + | chr3.4:25451482-25451501 | MS.gene77870:CDS | 45.0% | |
| ATGAGGGAAATGTGGTGATC+AGG | - | chr3.4:25452338-25452357 | None:intergenic | 45.0% | |
| ATTGGCTGTACCTACACCAA+GGG | + | chr3.4:25453480-25453499 | MS.gene77870:CDS | 45.0% | |
| CAAGAGCGATCGCTAGTAAT+TGG | - | chr3.4:25451061-25451080 | None:intergenic | 45.0% | |
| CACATGGTCCCTATTTGAGA+AGG | + | chr3.4:25452677-25452696 | MS.gene77870:CDS | 45.0% | |
| CGTTGAGATTTCTTAGGAGG+AGG | - | chr3.4:25450226-25450245 | None:intergenic | 45.0% | |
| GAAACAAACACCAACACCGT+CGG | - | chr3.4:25451339-25451358 | None:intergenic | 45.0% | |
| GAATGTGAGTAAAGACAGGG+TGG | - | chr3.4:25452832-25452851 | None:intergenic | 45.0% | |
| GAGAATGTTGCTCATGGTCA+TGG | + | chr3.4:25450094-25450113 | MS.gene77870:CDS | 45.0% | |
| GCCGCAAGCATGTAATAAGT+AGG | - | chr3.4:25451482-25451501 | None:intergenic | 45.0% | |
| GCGATTGGCAATGGCTTATA+TGG | + | chr3.4:25451368-25451387 | MS.gene77870:CDS | 45.0% | |
| GGAAGAAGGGTTAAGGGATT+TGG | + | chr3.4:25450006-25450025 | MS.gene77870:CDS | 45.0% | |
| GGAGCTAGAAAGATGGATGA+TGG | + | chr3.4:25449977-25449996 | MS.gene77870:CDS | 45.0% | |
| GGGTTAAGGGATTTGGAGAA+AGG | + | chr3.4:25450013-25450032 | MS.gene77870:CDS | 45.0% | |
| GGTGGTCATGATGATCATGA+AGG | + | chr3.4:25450115-25450134 | MS.gene77870:CDS | 45.0% | |
| GGTGGTTGTGGAGTTTGAAT+TGG | - | chr3.4:25450292-25450311 | None:intergenic | 45.0% | |
| TCGTAACAGATTGCAGCCTA+TGG | + | chr3.4:25452627-25452646 | MS.gene77870:intron | 45.0% | |
| TGAGATTTCTTAGGAGGAGG+AGG | - | chr3.4:25450223-25450242 | None:intergenic | 45.0% | |
| TGTGAGGAAGCAAATTGAGC+TGG | - | chr3.4:25452736-25452755 | None:intergenic | 45.0% | |
| TGTGGAGTTTGAATTGGTGC+TGG | - | chr3.4:25450286-25450305 | None:intergenic | 45.0% | |
| TTCCTCACAGGAGTTTGTAG+TGG | + | chr3.4:25452747-25452766 | MS.gene77870:CDS | 45.0% | |
| TTTGTGATGTCTCTTGCAGC+CGG | + | chr3.4:25451281-25451300 | MS.gene77870:CDS | 45.0% | |
| ! | AGCGCTGAGAATTGTTGCTA+GGG | + | chr3.4:25451769-25451788 | MS.gene77870:CDS | 45.0% |
| ! | AGCTCAATTTGCTTCCTCAC+AGG | + | chr3.4:25452735-25452754 | MS.gene77870:CDS | 45.0% |
| ! | TTGTTGCGCTCGTTGTTGTT+TGG | + | chr3.4:25451829-25451848 | MS.gene77870:CDS | 45.0% |
| !! | AAGCGCTGAGAATTGTTGCT+AGG | + | chr3.4:25451768-25451787 | MS.gene77870:CDS | 45.0% |
| !! | ATTGGTGCTGGTGTTGGTAT+TGG | - | chr3.4:25450274-25450293 | None:intergenic | 45.0% |
| !! | GAGCGTTGAGATTTCTTAGG+AGG | - | chr3.4:25450229-25450248 | None:intergenic | 45.0% |
| !! | GTTTGAATTGGTGCTGGTGT+TGG | - | chr3.4:25450280-25450299 | None:intergenic | 45.0% |
| !! | TGCTGGTGTTGGTATTGGAA+TGG | - | chr3.4:25450269-25450288 | None:intergenic | 45.0% |
| !! | TGTTGCGCTCGTTGTTGTTT+GGG | + | chr3.4:25451830-25451849 | MS.gene77870:CDS | 45.0% |
| !!! | ACATTTTTTATTTTTATTTT+TGG | + | chr3.4:25450803-25450822 | MS.gene77870:intron | 5.0% |
| !!! | ACTAAATTTATTTTTTAATA+TGG | + | chr3.4:25450947-25450966 | MS.gene77870:intron | 5.0% |
| !!! | CTAATTTATATAAAATTTTA+TGG | + | chr3.4:25453135-25453154 | MS.gene77870:intron | 5.0% |
| !!! | TTTTAAAATAATTTATAATC+AGG | + | chr3.4:25453057-25453076 | MS.gene77870:intron | 5.0% |
| AGCCACTACAAACTCCTGTG+AGG | - | chr3.4:25452752-25452771 | None:intergenic | 50.0% | |
| CAGATTGCAGCCTATGGAAG+AGG | + | chr3.4:25452633-25452652 | MS.gene77870:intron | 50.0% | |
| CATACCTGTGGTGGTTGTTG+TGG | - | chr3.4:25450322-25450341 | None:intergenic | 50.0% | |
| CGCTGAGAATTGTTGCTAGG+GGG | + | chr3.4:25451771-25451790 | MS.gene77870:CDS | 50.0% | |
| CTTGGACCACAGAGGTTATG+AGG | + | chr3.4:25451600-25451619 | MS.gene77870:CDS | 50.0% | |
| CTTGTGTTCAAGGGAGTCCA+AGG | + | chr3.4:25451089-25451108 | MS.gene77870:CDS | 50.0% | |
| GAGCGATCGCTAGTAATTGG+TGG | - | chr3.4:25451058-25451077 | None:intergenic | 50.0% | |
| GCGCTGAGAATTGTTGCTAG+GGG | + | chr3.4:25451770-25451789 | MS.gene77870:CDS | 50.0% | |
| TTCCAAAAGCCTCCAACCGA+CGG | + | chr3.4:25451320-25451339 | MS.gene77870:CDS | 50.0% | |
| TTGGCTGTACCTACACCAAG+GGG | + | chr3.4:25453481-25453500 | MS.gene77870:CDS | 50.0% | |
| TTGTGATGTCTCTTGCAGCC+GGG | + | chr3.4:25451282-25451301 | MS.gene77870:CDS | 50.0% | |
| ! | AGGGGGCTGAATTTGCTTGA+GGG | + | chr3.4:25451788-25451807 | MS.gene77870:CDS | 50.0% |
| ! | CTTCTAAGTCCCCTTGGTGT+AGG | - | chr3.4:25453493-25453512 | None:intergenic | 50.0% |
| ! | TAGGGGGCTGAATTTGCTTG+AGG | + | chr3.4:25451787-25451806 | MS.gene77870:CDS | 50.0% |
| !! | AGAGCGTTGACTCGGAATCT+TGG | + | chr3.4:25451707-25451726 | MS.gene77870:CDS | 50.0% |
| !! | GCTTTCTGAGAGCGTTGACT+CGG | + | chr3.4:25451699-25451718 | MS.gene77870:CDS | 50.0% |
| ACCACCACAACAACCACCAC+AGG | + | chr3.4:25450315-25450334 | MS.gene77870:CDS | 55.0% | |
| ACCTGTGGTGGTTGTTGTGG+TGG | - | chr3.4:25450319-25450338 | None:intergenic | 55.0% | |
| CAAACACCAACACCGTCGGT+TGG | - | chr3.4:25451335-25451354 | None:intergenic | 55.0% | |
| TGCTTGCGGCTGGATTCTTG+TGG | + | chr3.4:25451492-25451511 | MS.gene77870:CDS | 55.0% | |
| TGTGGTGGTTGTTGTGGTGG+TGG | - | chr3.4:25450316-25450335 | None:intergenic | 55.0% | |
| !! | GAGTTTGGCTTGGACCACAG+AGG | + | chr3.4:25451592-25451611 | MS.gene77870:CDS | 55.0% |
| AAGCCTCCAACCGACGGTGT+TGG | + | chr3.4:25451326-25451345 | MS.gene77870:CDS | 60.0% | |
| TGGTGATCAGGTTCGACCCG+AGG | - | chr3.4:25452326-25452345 | None:intergenic | 60.0% | |
| ! | ACACCAACACCGTCGGTTGG+AGG | - | chr3.4:25451332-25451351 | None:intergenic | 60.0% |
| !! | CACCGTCGGTTGGAGGCTTT+TGG | - | chr3.4:25451325-25451344 | None:intergenic | 60.0% |
| !! | GGTGGTTGTTGTGGTGGTGG+TGG | - | chr3.4:25450313-25450332 | None:intergenic | 60.0% |
| !! | GGTTGTTGTGGTGGTGGTGG+TGG | - | chr3.4:25450310-25450329 | None:intergenic | 60.0% |
| !! | TGTGGTGGTGGTGGTGGTTG+TGG | - | chr3.4:25450304-25450323 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 25449812 | 25453531 | 25449812 | ID=MS.gene77870 |
| chr3.4 | mRNA | 25449812 | 25453531 | 25449812 | ID=MS.gene77870.t1;Parent=MS.gene77870 |
| chr3.4 | exon | 25449812 | 25449829 | 25449812 | ID=MS.gene77870.t1.exon1;Parent=MS.gene77870.t1 |
| chr3.4 | CDS | 25449812 | 25449829 | 25449812 | ID=cds.MS.gene77870.t1;Parent=MS.gene77870.t1 |
| chr3.4 | exon | 25449962 | 25450336 | 25449962 | ID=MS.gene77870.t1.exon2;Parent=MS.gene77870.t1 |
| chr3.4 | CDS | 25449962 | 25450336 | 25449962 | ID=cds.MS.gene77870.t1;Parent=MS.gene77870.t1 |
| chr3.4 | exon | 25450990 | 25451901 | 25450990 | ID=MS.gene77870.t1.exon3;Parent=MS.gene77870.t1 |
| chr3.4 | CDS | 25450990 | 25451901 | 25450990 | ID=cds.MS.gene77870.t1;Parent=MS.gene77870.t1 |
| chr3.4 | exon | 25452636 | 25452869 | 25452636 | ID=MS.gene77870.t1.exon4;Parent=MS.gene77870.t1 |
| chr3.4 | CDS | 25452636 | 25452869 | 25452636 | ID=cds.MS.gene77870.t1;Parent=MS.gene77870.t1 |
| chr3.4 | exon | 25453349 | 25453531 | 25453349 | ID=MS.gene77870.t1.exon5;Parent=MS.gene77870.t1 |
| chr3.4 | CDS | 25453349 | 25453531 | 25453349 | ID=cds.MS.gene77870.t1;Parent=MS.gene77870.t1 |
| Gene Sequence |
| Protein sequence |
