Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78113.t1 | AES88429.1 | 97.3 | 182 | 5 | 0 | 1 | 182 | 1 | 182 | 3.70E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78113.t1 | Q55535 | 49.7 | 157 | 71 | 2 | 16 | 172 | 3 | 151 | 1.5e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78113.t1 | G7JKW9 | 97.3 | 182 | 5 | 0 | 1 | 182 | 1 | 182 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene78113 | 0.808648 | 2.79E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene78113 | 0.809117 | 2.22E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene78113 | 0.819203 | 1.31E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene78113 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene78113 | 0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene78113 | 0.811797 | 5.85E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene78113 | 0.805288 | 1.44E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene78113 | 0.808838 | 2.54E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene78113 | 0.809658 | 1.70E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene78113 | 0.818878 | 1.56E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene78113 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene78113 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene78113 | 0.801059 | 1.08E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene78113 | 0.826075 | 3.31E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene78113 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene78113 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene052505 | MS.gene78113 | 0.81919 | 1.32E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene78113 | 0.844637 | 6.68E-59 | -1.69E-46 |
| MS.gene052982 | MS.gene78113 | 0.827883 | 1.22E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene78113 | 0.837864 | 4.04E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene78113 | 0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene78113 | 0.814503 | 1.49E-51 | -1.69E-46 |
| MS.gene054422 | MS.gene78113 | -0.805473 | 1.31E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene78113 | 0.816797 | 4.60E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene78113 | 0.816683 | 4.87E-52 | -1.69E-46 |
| MS.gene055486 | MS.gene78113 | 0.854584 | 1.12E-61 | -1.69E-46 |
| MS.gene05594 | MS.gene78113 | 0.808473 | 3.04E-50 | -1.69E-46 |
| MS.gene056448 | MS.gene78113 | 0.807096 | 5.97E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene78113 | 0.807166 | 5.77E-50 | -1.69E-46 |
| MS.gene056782 | MS.gene78113 | 0.808336 | 3.26E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene78113 | 0.816952 | 4.24E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene78113 | 0.8104 | 1.17E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene78113 | 0.817377 | 3.40E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene78113 | 0.817695 | 2.89E-52 | -1.69E-46 |
| MS.gene05883 | MS.gene78113 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene78113 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene78113 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene78113 | 0.820924 | 5.30E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene78113 | 0.805875 | 1.08E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene78113 | 0.80535 | 1.39E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene78113 | 0.809634 | 1.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78113.t1 | MTR_4g055030 | 97.253 | 182 | 5 | 0 | 1 | 182 | 1 | 182 | 6.31e-134 | 372 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78113.t1 | AT3G44620 | 76.836 | 177 | 40 | 1 | 1 | 176 | 63 | 239 | 1.65e-96 | 280 |
| MS.gene78113.t1 | AT3G44620 | 68.000 | 200 | 40 | 2 | 1 | 176 | 63 | 262 | 9.57e-91 | 266 |
| MS.gene78113.t1 | AT3G44485 | 53.333 | 60 | 22 | 1 | 117 | 170 | 5 | 64 | 3.25e-11 | 57.0 |
Find 28 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGCTGACCTCATTCT+TGG | 0.214058 | 4.4:+47973540 | None:intergenic |
| ATCATTGCTGGATAGCATTT+TGG | 0.270039 | 4.4:-47971765 | MS.gene78113:CDS |
| ACCTGAAGATGCACACAAAA+AGG | 0.322490 | 4.4:-47973270 | MS.gene78113:intron |
| TCCGTTCTCTTTGTATGTCT+TGG | 0.367142 | 4.4:-47973977 | MS.gene78113:CDS |
| ACAAAATCAGAAGGCTTGAT+TGG | 0.384101 | 4.4:+47973483 | None:intergenic |
| TTCAGATAACTTCAATTTCA+AGG | 0.407069 | 4.4:-47973506 | MS.gene78113:CDS |
| AGATGCTTGTGAATCATTGC+TGG | 0.423871 | 4.4:-47971777 | MS.gene78113:CDS |
| TTGTGTGCATCTTCAGGTAA+AGG | 0.430130 | 4.4:+47973275 | None:intergenic |
| GTGAAAACACCTTCAGCAGC+TGG | 0.442462 | 4.4:+47973938 | None:intergenic |
| GTTTGATCTTATTCTTGCTA+TGG | 0.444378 | 4.4:-47973457 | MS.gene78113:CDS |
| ATTGATTCTGCTGGTACAAT+CGG | 0.457565 | 4.4:-47973875 | MS.gene78113:CDS |
| GAAGTCCCGGATCCTTACTA+TGG | 0.472238 | 4.4:-47972817 | MS.gene78113:CDS |
| AAGTTCAGAATTGATTCTGC+TGG | 0.475953 | 4.4:-47973884 | MS.gene78113:CDS |
| GGTCCACCATAGTAAGGATC+CGG | 0.483919 | 4.4:+47972811 | None:intergenic |
| CCTTGAGGTCCACCATAGTA+AGG | 0.486542 | 4.4:+47972805 | None:intergenic |
| CCTTACTATGGTGGACCTCA+AGG | 0.500453 | 4.4:-47972805 | MS.gene78113:CDS |
| GCATGATGAAACCGAAGTCC+CGG | 0.534176 | 4.4:-47972830 | MS.gene78113:CDS |
| CATACAAAGAGAACGGAGAA+TGG | 0.541536 | 4.4:+47973983 | None:intergenic |
| TGTAGAAGCCCAGCTGCTGA+AGG | 0.566668 | 4.4:-47973947 | MS.gene78113:CDS |
| TGAAAACACCTTCAGCAGCT+GGG | 0.579306 | 4.4:+47973939 | None:intergenic |
| ATAGTAAGGATCCGGGACTT+CGG | 0.579621 | 4.4:+47972819 | None:intergenic |
| GTCCACCATAGTAAGGATCC+GGG | 0.586473 | 4.4:+47972812 | None:intergenic |
| TCAAACTCAACAAAATCAGA+AGG | 0.591117 | 4.4:+47973474 | None:intergenic |
| ATGAAGCTGATCCAAGAATG+AGG | 0.615117 | 4.4:-47973551 | MS.gene78113:CDS |
| GTCCCGGATCCTTACTATGG+TGG | 0.618032 | 4.4:-47972814 | MS.gene78113:CDS |
| GCCAAGACATACAAAGAGAA+CGG | 0.626597 | 4.4:+47973976 | None:intergenic |
| GCTATGGACAAGCAAAACAA+AGG | 0.649274 | 4.4:-47973441 | MS.gene78113:intron |
| TATACCTTCTCAAAACCTTG+AGG | 0.655564 | 4.4:+47972790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAAAAAATTTGTTTTTTT+GGG | - | chr4.4:47972121-47972140 | MS.gene78113:intron | 10.0% |
| !!! | GTGTTTATTTTTTTAAATTT+CGG | - | chr4.4:47972015-47972034 | MS.gene78113:intron | 10.0% |
| !!! | TATGAAAAAATTTGTTTTTT+TGG | - | chr4.4:47972120-47972139 | MS.gene78113:intron | 10.0% |
| !! | AAAACAAAAAAAAAACAACA+AGG | + | chr4.4:47972417-47972436 | None:intergenic | 15.0% |
| !!! | AAAAAGTTGATTTTTTATGA+TGG | - | chr4.4:47971967-47971986 | MS.gene78113:intron | 15.0% |
| !!! | AAAAGTTGATTTTTTATGAT+GGG | - | chr4.4:47971968-47971987 | MS.gene78113:intron | 15.0% |
| !!! | AAAGTTGATATTTTTTTTGA+AGG | - | chr4.4:47972178-47972197 | MS.gene78113:intron | 15.0% |
| !!! | AAGTTGATATTTTTTTTGAA+GGG | - | chr4.4:47972179-47972198 | MS.gene78113:intron | 15.0% |
| !!! | ATAAAATTTTCATTTTTCCT+TGG | + | chr4.4:47972704-47972723 | None:intergenic | 15.0% |
| !!! | CTCTTTTTATTAAATTGTAA+TGG | - | chr4.4:47972390-47972409 | MS.gene78113:intron | 15.0% |
| !!! | TTGTTTTTTTTTTGTTTTAG+AGG | - | chr4.4:47972419-47972438 | MS.gene78113:intron | 15.0% |
| !! | ATTGCATATATTCTAATATG+AGG | - | chr4.4:47973418-47973437 | MS.gene78113:intron | 20.0% |
| !! | ATTTGATATAGAGATGTTTA+AGG | + | chr4.4:47971926-47971945 | None:intergenic | 20.0% |
| !! | TATTCTTTATGATAGGTTAT+TGG | - | chr4.4:47972986-47973005 | MS.gene78113:intron | 20.0% |
| !!! | AGAATCAAAAAACTACATTT+TGG | - | chr4.4:47973743-47973762 | MS.gene78113:intron | 20.0% |
| !!! | AGTTTTTTTTTTTCTCTTTC+TGG | - | chr4.4:47972738-47972757 | MS.gene78113:intron | 20.0% |
| !!! | ATGATAATATTTTCTGTCAT+TGG | - | chr4.4:47973395-47973414 | MS.gene78113:intron | 20.0% |
| !!! | CTTCTAAAGACATTTTAAAT+TGG | - | chr4.4:47973670-47973689 | MS.gene78113:intron | 20.0% |
| !!! | TGTTTTCAAATGATAATATG+TGG | + | chr4.4:47973871-47973890 | None:intergenic | 20.0% |
| ! | AATCTGAATTTGGTTGTTTA+TGG | - | chr4.4:47972355-47972374 | MS.gene78113:intron | 25.0% |
| ! | ACAATCAATTATCATGAAGT+GGG | - | chr4.4:47972054-47972073 | MS.gene78113:intron | 25.0% |
| ! | AGAAGTTGAATATCATTTAC+CGG | - | chr4.4:47973035-47973054 | MS.gene78113:intron | 25.0% |
| ! | ATATTGAGTGAAATTCATGT+AGG | - | chr4.4:47973474-47973493 | MS.gene78113:CDS | 25.0% |
| ! | ATTCTAATATGAGGAATACT+AGG | - | chr4.4:47973427-47973446 | MS.gene78113:intron | 25.0% |
| ! | GAGATGTTATAATCTGAATT+TGG | - | chr4.4:47972345-47972364 | MS.gene78113:intron | 25.0% |
| ! | TACAATCAATTATCATGAAG+TGG | - | chr4.4:47972053-47972072 | MS.gene78113:intron | 25.0% |
| ! | TGAAATCAACTAATCATAGT+TGG | - | chr4.4:47973364-47973383 | MS.gene78113:intron | 25.0% |
| ! | TTCAGATAACTTCAATTTCA+AGG | - | chr4.4:47972249-47972268 | MS.gene78113:intron | 25.0% |
| ! | TTGTTAGACAACCTAAATTA+AGG | - | chr4.4:47972779-47972798 | MS.gene78113:intron | 25.0% |
| !! | AATTTCGGAATTGATTCTAT+TGG | - | chr4.4:47972030-47972049 | MS.gene78113:intron | 25.0% |
| !! | ATGATTAGTTGATTTCAGTT+AGG | + | chr4.4:47973361-47973380 | None:intergenic | 25.0% |
| !! | GAAGGTATATTCTTTATGAT+AGG | - | chr4.4:47972979-47972998 | MS.gene78113:intron | 25.0% |
| !! | TGATTTGTCATATTGTACAT+CGG | - | chr4.4:47973818-47973837 | MS.gene78113:intron | 25.0% |
| !! | TTGTTCTAAATCGTATATTG+TGG | - | chr4.4:47972628-47972647 | MS.gene78113:intron | 25.0% |
| !!! | AATTTTGCTTTTGCATTTCT+TGG | - | chr4.4:47973694-47973713 | MS.gene78113:intron | 25.0% |
| !!! | ATTTTGCTTTTGCATTTCTT+GGG | - | chr4.4:47973695-47973714 | MS.gene78113:intron | 25.0% |
| !!! | CTAACACTCACTTTTTTATT+GGG | + | chr4.4:47973554-47973573 | None:intergenic | 25.0% |
| !!! | TCTAACACTCACTTTTTTAT+TGG | + | chr4.4:47973555-47973574 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTGTTTTTATGAT+GGG | - | chr4.4:47972137-47972156 | MS.gene78113:intron | 25.0% |
| !!! | TTTTGTTTTAGAGGACATAT+TGG | - | chr4.4:47972428-47972447 | MS.gene78113:intron | 25.0% |
| !!! | TTTTTGGGTTGTTTTTATGA+TGG | - | chr4.4:47972136-47972155 | MS.gene78113:intron | 25.0% |
| !!! | TTTTTTTTTCTCTTTCTGGT+AGG | - | chr4.4:47972742-47972761 | MS.gene78113:intron | 25.0% |
| CGTATATTGTGGAACAATTA+TGG | - | chr4.4:47972639-47972658 | MS.gene78113:intron | 30.0% | |
| GATTTGTCATATTGTACATC+GGG | - | chr4.4:47973819-47973838 | MS.gene78113:intron | 30.0% | |
| GTTTGATCTTATTCTTGCTA+TGG | - | chr4.4:47972298-47972317 | MS.gene78113:intron | 30.0% | |
| TCAAACTCAACAAAATCAGA+AGG | + | chr4.4:47972284-47972303 | None:intergenic | 30.0% | |
| TGGATCTGACTACTTTATAT+GGG | + | chr4.4:47973520-47973539 | None:intergenic | 30.0% | |
| TTTATTGGGTGATATTCATG+TGG | + | chr4.4:47973540-47973559 | None:intergenic | 30.0% | |
| TTTGACAACATTGAATTCCA+AGG | - | chr4.4:47972684-47972703 | MS.gene78113:intron | 30.0% | |
| ! | GTCTAACAAAAACTTGCTTT+AGG | + | chr4.4:47972768-47972787 | None:intergenic | 30.0% |
| ! | TATTGGAAGCTTTTAGTAGA+TGG | - | chr4.4:47972445-47972464 | MS.gene78113:intron | 30.0% |
| !! | AATATGTTTTTCAACCCTGA+TGG | - | chr4.4:47972854-47972873 | MS.gene78113:CDS | 30.0% |
| ACAAAATCAGAAGGCTTGAT+TGG | + | chr4.4:47972275-47972294 | None:intergenic | 35.0% | |
| ACAATCGGTTATCATGAAGT+GGG | - | chr4.4:47971895-47971914 | MS.gene78113:intron | 35.0% | |
| AGCAACAAAAGTTCTACTCA+CGG | + | chr4.4:47972825-47972844 | None:intergenic | 35.0% | |
| ATATAAGGCGGCCTTAATTT+AGG | + | chr4.4:47972793-47972812 | None:intergenic | 35.0% | |
| ATTCAAGACTATCTTTGCAC+CGG | + | chr4.4:47973057-47973076 | None:intergenic | 35.0% | |
| CTAGTGAAATAGTTGAGTGT+TGG | - | chr4.4:47973290-47973309 | MS.gene78113:CDS | 35.0% | |
| GTGGATCTGACTACTTTATA+TGG | + | chr4.4:47973521-47973540 | None:intergenic | 35.0% | |
| TACAATCGGTTATCATGAAG+TGG | - | chr4.4:47971894-47971913 | MS.gene78113:intron | 35.0% | |
| TATACCTTCTCAAAACCTTG+AGG | + | chr4.4:47972968-47972987 | None:intergenic | 35.0% | |
| TCACGGTCAACACAAATATA+AGG | + | chr4.4:47972808-47972827 | None:intergenic | 35.0% | |
| ! | AAGTTCAGAATTGATTCTGC+TGG | - | chr4.4:47971871-47971890 | MS.gene78113:intron | 35.0% |
| ! | ATCATTGCTGGATAGCATTT+TGG | - | chr4.4:47973990-47974009 | MS.gene78113:CDS | 35.0% |
| ! | ATTGATTCTGCTGGTACAAT+CGG | - | chr4.4:47971880-47971899 | MS.gene78113:intron | 35.0% |
| !! | ACAGACTTGGTGAAAAAAAG+AGG | - | chr4.4:47971838-47971857 | MS.gene78113:intron | 35.0% |
| !!! | ATGGGATCCATTTTAAAGTG+TGG | + | chr4.4:47973502-47973521 | None:intergenic | 35.0% |
| !!! | TGGGATCCATTTTAAAGTGT+GGG | + | chr4.4:47973501-47973520 | None:intergenic | 35.0% |
| AAATCGAACCCCTTTATCCA+AGG | - | chr4.4:47972525-47972544 | MS.gene78113:intron | 40.0% | |
| ACAACACTGCCTTGGATAAA+GGG | + | chr4.4:47972537-47972556 | None:intergenic | 40.0% | |
| ACCCTTGGTTCATCTTTGTA+GGG | - | chr4.4:47973012-47973031 | MS.gene78113:intron | 40.0% | |
| ACCTGAAGATGCACACAAAA+AGG | - | chr4.4:47972485-47972504 | MS.gene78113:intron | 40.0% | |
| AGATGCTTGTGAATCATTGC+TGG | - | chr4.4:47973978-47973997 | MS.gene78113:CDS | 40.0% | |
| ATGAAGCTGATCCAAGAATG+AGG | - | chr4.4:47972204-47972223 | MS.gene78113:intron | 40.0% | |
| CATACAAAGAGAACGGAGAA+TGG | + | chr4.4:47971775-47971794 | None:intergenic | 40.0% | |
| CGGTCAACACAAATATAAGG+CGG | + | chr4.4:47972805-47972824 | None:intergenic | 40.0% | |
| GACAAGCAAAACAAAGGTAG+GGG | - | chr4.4:47972320-47972339 | MS.gene78113:intron | 40.0% | |
| GCCAAGACATACAAAGAGAA+CGG | + | chr4.4:47971782-47971801 | None:intergenic | 40.0% | |
| GCTACAACATTCTAGCGTAT+CGG | + | chr4.4:47972591-47972610 | None:intergenic | 40.0% | |
| GCTATGGACAAGCAAAACAA+AGG | - | chr4.4:47972314-47972333 | MS.gene78113:intron | 40.0% | |
| GGACAAGCAAAACAAAGGTA+GGG | - | chr4.4:47972319-47972338 | MS.gene78113:intron | 40.0% | |
| TAGCACGATACTGACATACA+CGG | - | chr4.4:47973170-47973189 | MS.gene78113:intron | 40.0% | |
| TCCCTACAAAGATGAACCAA+GGG | + | chr4.4:47973016-47973035 | None:intergenic | 40.0% | |
| TCCGTTCTCTTTGTATGTCT+TGG | - | chr4.4:47971778-47971797 | MS.gene78113:CDS | 40.0% | |
| TGGACAAGCAAAACAAAGGT+AGG | - | chr4.4:47972318-47972337 | MS.gene78113:intron | 40.0% | |
| TTGTCAATTGCGGACAATAG+CGG | - | chr4.4:47972553-47972572 | MS.gene78113:intron | 40.0% | |
| TTGTGTGCATCTTCAGGTAA+AGG | + | chr4.4:47972483-47972502 | None:intergenic | 40.0% | |
| ! | ACCTTTTTGTGTGCATCTTC+AGG | + | chr4.4:47972489-47972508 | None:intergenic | 40.0% |
| ! | GTAGGTCCCACACTTTAAAA+TGG | - | chr4.4:47973492-47973511 | MS.gene78113:CDS | 40.0% |
| ! | TTTGAAGCTGACCTCATTCT+TGG | + | chr4.4:47972218-47972237 | None:intergenic | 40.0% |
| !! | ATAGGTTATTGGTTCACCCT+TGG | - | chr4.4:47972997-47973016 | MS.gene78113:intron | 40.0% |
| !!! | TGAAGGTGTTTTCACAGACT+TGG | - | chr4.4:47971825-47971844 | MS.gene78113:intron | 40.0% |
| AGGTCAGCTTCAAAAAGACG+TGG | - | chr4.4:47972224-47972243 | MS.gene78113:intron | 45.0% | |
| ATAGTAAGGATCCGGGACTT+CGG | + | chr4.4:47972939-47972958 | None:intergenic | 45.0% | |
| CAACACTGCCTTGGATAAAG+GGG | + | chr4.4:47972536-47972555 | None:intergenic | 45.0% | |
| CAAGCAATGAAAGACCGACA+CGG | + | chr4.4:47973265-47973284 | None:intergenic | 45.0% | |
| CAAGCATATCTAACACCTGC+AGG | + | chr4.4:47973957-47973976 | None:intergenic | 45.0% | |
| CAAGGCAGTGTTGTCAATTG+CGG | - | chr4.4:47972543-47972562 | MS.gene78113:intron | 45.0% | |
| CACCCTTGGTTCATCTTTGT+AGG | - | chr4.4:47973011-47973030 | MS.gene78113:intron | 45.0% | |
| CTCCCTACAAAGATGAACCA+AGG | + | chr4.4:47973017-47973036 | None:intergenic | 45.0% | |
| GACAACACTGCCTTGGATAA+AGG | + | chr4.4:47972538-47972557 | None:intergenic | 45.0% | |
| GCAATTCTGGTGCACATACT+TGG | - | chr4.4:47973606-47973625 | MS.gene78113:intron | 45.0% | |
| GGTCAGCTTCAAAAAGACGT+GGG | - | chr4.4:47972225-47972244 | MS.gene78113:intron | 45.0% | |
| GTTCTTTGCACTCGCAATTC+TGG | - | chr4.4:47973593-47973612 | MS.gene78113:intron | 45.0% | |
| TGAAAACACCTTCAGCAGCT+GGG | + | chr4.4:47971819-47971838 | None:intergenic | 45.0% | |
| TGGTGCACATACTTGGTACT+TGG | - | chr4.4:47973613-47973632 | MS.gene78113:intron | 45.0% | |
| ! | ACGCCTTTCATGAGAAGTGT+CGG | + | chr4.4:47973129-47973148 | None:intergenic | 45.0% |
| ! | ATGTGTCACTGTCGTGTCTA+GGG | - | chr4.4:47973239-47973258 | MS.gene78113:intron | 45.0% |
| !!! | TGGACCTCAAGGTTTTGAGA+AGG | - | chr4.4:47972961-47972980 | MS.gene78113:intron | 45.0% |
| CAGTGACACATCAACGACAC+TGG | + | chr4.4:47973230-47973249 | None:intergenic | 50.0% | |
| CCTTGAGGTCCACCATAGTA+AGG | + | chr4.4:47972953-47972972 | None:intergenic | 50.0% | |
| CGCAATTGACAACACTGCCT+TGG | + | chr4.4:47972545-47972564 | None:intergenic | 50.0% | |
| GAAGTCCCGGATCCTTACTA+TGG | - | chr4.4:47972938-47972957 | MS.gene78113:intron | 50.0% | |
| GATCATCATGTTGCACCTGC+AGG | - | chr4.4:47973939-47973958 | MS.gene78113:CDS | 50.0% | |
| GCATGATGAAACCGAAGTCC+CGG | - | chr4.4:47972925-47972944 | MS.gene78113:intron | 50.0% | |
| GGTCCACCATAGTAAGGATC+CGG | + | chr4.4:47972947-47972966 | None:intergenic | 50.0% | |
| GTCCACCATAGTAAGGATCC+GGG | + | chr4.4:47972946-47972965 | None:intergenic | 50.0% | |
| GTGAAAACACCTTCAGCAGC+TGG | + | chr4.4:47971820-47971839 | None:intergenic | 50.0% | |
| TCAACCCTGATGGAGAGTCT+GGG | - | chr4.4:47972864-47972883 | MS.gene78113:intron | 50.0% | |
| TTCAACCCTGATGGAGAGTC+TGG | - | chr4.4:47972863-47972882 | MS.gene78113:intron | 50.0% | |
| ! | GATGTGTCACTGTCGTGTCT+AGG | - | chr4.4:47973238-47973257 | MS.gene78113:intron | 50.0% |
| ! | GCACCGACACTTCTCATGAA+AGG | - | chr4.4:47973123-47973142 | MS.gene78113:intron | 50.0% |
| !! | CCTTACTATGGTGGACCTCA+AGG | - | chr4.4:47972950-47972969 | MS.gene78113:intron | 50.0% |
| ACCATCCCAGACTCTCCATC+AGG | + | chr4.4:47972872-47972891 | None:intergenic | 55.0% | |
| CCATCCCAGACTCTCCATCA+GGG | + | chr4.4:47972871-47972890 | None:intergenic | 55.0% | |
| GTATCGTGCTAGTGTCGTGC+TGG | + | chr4.4:47973161-47973180 | None:intergenic | 55.0% | |
| GTCCCGGATCCTTACTATGG+TGG | - | chr4.4:47972941-47972960 | MS.gene78113:intron | 55.0% | |
| TGTAGAAGCCCAGCTGCTGA+AGG | - | chr4.4:47971808-47971827 | MS.gene78113:intron | 55.0% | |
| CCCTGATGGAGAGTCTGGGA+TGG | - | chr4.4:47972868-47972887 | MS.gene78113:intron | 60.0% | |
| GCTAGTGTCGTGCTGGAGGT+TGG | + | chr4.4:47973154-47973173 | None:intergenic | 60.0% | |
| TCGTGCTAGTGTCGTGCTGG+AGG | + | chr4.4:47973158-47973177 | None:intergenic | 60.0% | |
| ! | TGGAGAGTCTGGGATGGTGC+AGG | - | chr4.4:47972874-47972893 | MS.gene78113:intron | 60.0% |
| ! | TGTCGTGTCTAGGGCCGTGT+CGG | - | chr4.4:47973248-47973267 | MS.gene78113:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 47971736 | 47974041 | 47971736 | ID=MS.gene78113 |
| chr4.4 | mRNA | 47971736 | 47974041 | 47971736 | ID=MS.gene78113.t1;Parent=MS.gene78113 |
| chr4.4 | exon | 47973865 | 47974041 | 47973865 | ID=MS.gene78113.t1.exon1;Parent=MS.gene78113.t1 |
| chr4.4 | CDS | 47973865 | 47974041 | 47973865 | ID=cds.MS.gene78113.t1;Parent=MS.gene78113.t1 |
| chr4.4 | exon | 47973442 | 47973577 | 47973442 | ID=MS.gene78113.t1.exon2;Parent=MS.gene78113.t1 |
| chr4.4 | CDS | 47973442 | 47973577 | 47973442 | ID=cds.MS.gene78113.t1;Parent=MS.gene78113.t1 |
| chr4.4 | exon | 47973271 | 47973338 | 47973271 | ID=MS.gene78113.t1.exon3;Parent=MS.gene78113.t1 |
| chr4.4 | CDS | 47973271 | 47973338 | 47973271 | ID=cds.MS.gene78113.t1;Parent=MS.gene78113.t1 |
| chr4.4 | exon | 47972795 | 47972881 | 47972795 | ID=MS.gene78113.t1.exon4;Parent=MS.gene78113.t1 |
| chr4.4 | CDS | 47972795 | 47972881 | 47972795 | ID=cds.MS.gene78113.t1;Parent=MS.gene78113.t1 |
| chr4.4 | exon | 47971736 | 47971816 | 47971736 | ID=MS.gene78113.t1.exon5;Parent=MS.gene78113.t1 |
| chr4.4 | CDS | 47971736 | 47971816 | 47971736 | ID=cds.MS.gene78113.t1;Parent=MS.gene78113.t1 |
| Gene Sequence |
| Protein sequence |
