AlfalfaGEDB | MS.gene79127

M. sativa cultivar XinJiangDaYe / MS.gene79127

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79127.t1	RZC04328.1	78.3	46	9	1	9	54	928	972	9.40E-09	69.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79127.t1	I1KMJ8	78.3	46	9	1	9	54	934	978	6.8e-09	69.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene79127	0.834072	3.70E-56	-1.69E-46
MS.gene049666	MS.gene79127	0.800917	1.15E-48	-1.69E-46
MS.gene049821	MS.gene79127	0.843176	1.65E-58	-1.69E-46
MS.gene049977	MS.gene79127	0.804407	2.19E-49	-1.69E-46
MS.gene050026	MS.gene79127	0.829479	5.03E-55	-1.69E-46
MS.gene050156	MS.gene79127	0.806971	6.35E-50	-1.69E-46
MS.gene050355	MS.gene79127	0.813677	2.27E-51	-1.69E-46
MS.gene050750	MS.gene79127	0.805398	1.36E-49	-1.69E-46
MS.gene050953	MS.gene79127	0.805169	1.52E-49	-1.69E-46
MS.gene051247	MS.gene79127	0.826747	2.29E-54	-1.69E-46
MS.gene051594	MS.gene79127	0.820247	7.59E-53	-1.69E-46
MS.gene051719	MS.gene79127	0.817699	2.88E-52	-1.69E-46
MS.gene051720	MS.gene79127	0.814159	1.78E-51	-1.69E-46
MS.gene051957	MS.gene79127	0.807744	4.35E-50	-1.69E-46
MS.gene052208	MS.gene79127	0.813382	2.63E-51	-1.69E-46
MS.gene052519	MS.gene79127	0.823832	1.12E-53	-1.69E-46
MS.gene052582	MS.gene79127	0.818963	1.49E-52	-1.69E-46
MS.gene052584	MS.gene79127	0.826841	2.17E-54	-1.69E-46
MS.gene052773	MS.gene79127	0.801338	9.44E-49	-1.69E-46
MS.gene053226	MS.gene79127	0.832036	1.19E-55	-1.69E-46
MS.gene05365	MS.gene79127	0.807776	4.28E-50	-1.69E-46
MS.gene053883	MS.gene79127	0.823024	1.73E-53	-1.69E-46
MS.gene05414	MS.gene79127	0.825634	4.21E-54	-1.69E-46
MS.gene05415	MS.gene79127	0.841623	4.25E-58	-1.69E-46
MS.gene05423	MS.gene79127	0.810964	8.87E-51	-1.69E-46
MS.gene054291	MS.gene79127	-0.804696	1.91E-49	-1.69E-46
MS.gene054775	MS.gene79127	0.80067	1.29E-48	-1.69E-46
MS.gene055166	MS.gene79127	0.803951	2.73E-49	-1.69E-46
MS.gene055465	MS.gene79127	0.805128	1.55E-49	-1.69E-46
MS.gene055466	MS.gene79127	0.808894	2.47E-50	-1.69E-46
MS.gene055468	MS.gene79127	0.807686	4.48E-50	-1.69E-46
MS.gene055778	MS.gene79127	0.840805	6.97E-58	-1.69E-46
MS.gene055818	MS.gene79127	0.83262	8.52E-56	-1.69E-46
MS.gene05604	MS.gene79127	0.801467	8.88E-49	-1.69E-46
MS.gene056050	MS.gene79127	0.804676	1.93E-49	-1.69E-46
MS.gene056174	MS.gene79127	0.829368	5.35E-55	-1.69E-46
MS.gene056498	MS.gene79127	0.821541	3.82E-53	-1.69E-46
MS.gene056595	MS.gene79127	0.807826	4.18E-50	-1.69E-46
MS.gene05690	MS.gene79127	0.807029	6.17E-50	-1.69E-46
MS.gene057060	MS.gene79127	0.808159	3.55E-50	-1.69E-46
MS.gene057314	MS.gene79127	0.836518	8.93E-57	-1.69E-46
MS.gene057414	MS.gene79127	0.816983	4.17E-52	-1.69E-46
MS.gene057444	MS.gene79127	0.831551	1.57E-55	-1.69E-46
MS.gene057693	MS.gene79127	0.802328	5.91E-49	-1.69E-46
MS.gene057915	MS.gene79127	0.80305	4.19E-49	-1.69E-46
MS.gene058037	MS.gene79127	0.804422	2.18E-49	-1.69E-46
MS.gene058625	MS.gene79127	0.806396	8.39E-50	-1.69E-46
MS.gene058979	MS.gene79127	0.81519	1.05E-51	-1.69E-46
MS.gene059015	MS.gene79127	0.802447	5.59E-49	-1.69E-46
MS.gene059272	MS.gene79127	0.812067	5.11E-51	-1.69E-46
MS.gene059459	MS.gene79127	0.812231	4.70E-51	-1.69E-46
MS.gene059460	MS.gene79127	0.81735	3.45E-52	-1.69E-46
MS.gene05954	MS.gene79127	0.826758	2.28E-54	-1.69E-46
MS.gene059625	MS.gene79127	0.847431	1.16E-59	-1.69E-46
MS.gene060429	MS.gene79127	0.813038	3.13E-51	-1.69E-46
MS.gene060521	MS.gene79127	0.8395	1.53E-57	-1.69E-46
MS.gene060572	MS.gene79127	0.811316	7.44E-51	-1.69E-46
MS.gene060634	MS.gene79127	-0.823772	1.16E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79127.t1	MTR_4g123670	83.333	48	8	0	5	52	472	519	2.34e-19	80.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 22 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACACGACTTCCCTTGTTTC+AGG	0.153942	3.1:+68695912	None:intergenic
AAACTGCTTCACTTCACTAA+TGG	0.340507	3.1:-68695876	MS.gene79127:CDS
TTGTAATTCTTTCAACTGAA+TGG	0.353975	3.1:+68695847	None:intergenic
GGATGAAGATGGCGTGGATG+AGG	0.450681	3.1:-68695801	MS.gene79127:CDS
ATTAACCTCATCATAATCTT+CGG	0.465947	3.1:+68695760	None:intergenic
TGGGAAAGGAGATGAAGTAG+AGG	0.496213	3.1:-68695822	MS.gene79127:CDS
CAGTTGAAAGAATTACAAGA+TGG	0.531894	3.1:-68695842	MS.gene79127:CDS
GATGAAGTAGAGGATGAAGA+TGG	0.543029	3.1:-68695812	MS.gene79127:CDS
CTGAGCAACTCCTGAAACAA+GGG	0.557999	3.1:-68695922	MS.gene79127:CDS
AGTTGAAAGAATTACAAGAT+GGG	0.566152	3.1:-68695841	MS.gene79127:CDS
CTTCTCCACACAAACCTCCA+TGG	0.568447	3.1:+68696033	None:intergenic
CTGTTTAAATTAGGACTCTG+AGG	0.574975	3.1:-68695599	MS.gene79127:intron
ACTGAGCAACTCCTGAAACA+AGG	0.580659	3.1:-68695923	MS.gene79127:CDS
AAAGAATTACAAGATGGGAA+AGG	0.585242	3.1:-68695836	MS.gene79127:CDS
CTGCTTCACTTCACTAATGG+AGG	0.589139	3.1:-68695873	MS.gene79127:CDS
ATGAGAGGGAGAATGAGCCA+TGG	0.616733	3.1:-68696050	MS.gene79127:CDS
AAAAGCCATGGACAAATGAG+AGG	0.628002	3.1:-68696065	None:intergenic
AGTAGAGGATGAAGATGGCG+TGG	0.645857	3.1:-68695807	MS.gene79127:CDS
AGAGGGAGAATGAGCCATGG+AGG	0.663372	3.1:-68696047	MS.gene79127:intron
CTGAAACAAGGGAAGTCGTG+TGG	0.664589	3.1:-68695911	MS.gene79127:CDS
AAAGCCATGGACAAATGAGA+GGG	0.669427	3.1:-68696064	None:intergenic
TGACTCCGAAGATTATGATG+AGG	0.676696	3.1:-68695765	MS.gene79127:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AGTTGAAAGAATTACAAGAT+GGG	-	chr3.1:68695791-68695810	MS.gene79127:CDS	25.0%
!	ATTAACCTCATCATAATCTT+CGG	+	chr3.1:68695875-68695894	None:intergenic	25.0%
!	TTGTAATTCTTTCAACTGAA+TGG	+	chr3.1:68695788-68695807	None:intergenic	25.0%
	AAAGAATTACAAGATGGGAA+AGG	-	chr3.1:68695796-68695815	MS.gene79127:CDS	30.0%
	CAGTTGAAAGAATTACAAGA+TGG	-	chr3.1:68695790-68695809	MS.gene79127:CDS	30.0%
	TTAACAGTTCTTAATCCTGT+GGG	-	chr3.1:68696009-68696028	MS.gene79127:intron	30.0%
	TTTAACAGTTCTTAATCCTG+TGG	-	chr3.1:68696008-68696027	MS.gene79127:intron	30.0%
!	TATATCTCCTTTTGTCTACA+AGG	-	chr3.1:68695942-68695961	MS.gene79127:CDS	30.0%
!!	TAACTTTTCCGTTTTAGTGA+TGG	-	chr3.1:68695672-68695691	MS.gene79127:intron	30.0%
	AAACTGCTTCACTTCACTAA+TGG	-	chr3.1:68695756-68695775	MS.gene79127:intron	35.0%
	CTGTTTAAATTAGGACTCTG+AGG	-	chr3.1:68696033-68696052	MS.gene79127:intron	35.0%
	ACCTAGTGCCATCACTAAAA+CGG	+	chr3.1:68695683-68695702	None:intergenic	40.0%
	CACAGAACCTTGTAGACAAA+AGG	+	chr3.1:68695952-68695971	None:intergenic	40.0%
	CCTAATTTAAACAGACCCAC+AGG	+	chr3.1:68696027-68696046	None:intergenic	40.0%
	CCTGTGGGTCTGTTTAAATT+AGG	-	chr3.1:68696024-68696043	MS.gene79127:intron	40.0%
	GATGAAGTAGAGGATGAAGA+TGG	-	chr3.1:68695820-68695839	MS.gene79127:CDS	40.0%
	TGACTCCGAAGATTATGATG+AGG	-	chr3.1:68695867-68695886	MS.gene79127:CDS	40.0%
	ACTGAGCAACTCCTGAAACA+AGG	-	chr3.1:68695709-68695728	MS.gene79127:intron	45.0%
	CTGAGCAACTCCTGAAACAA+GGG	-	chr3.1:68695710-68695729	MS.gene79127:intron	45.0%
	CTGCTTCACTTCACTAATGG+AGG	-	chr3.1:68695759-68695778	MS.gene79127:intron	45.0%
	TGGGAAAGGAGATGAAGTAG+AGG	-	chr3.1:68695810-68695829	MS.gene79127:CDS	45.0%
!!	TCCGTTTTAGTGATGGCACT+AGG	-	chr3.1:68695679-68695698	MS.gene79127:intron	45.0%
	AGTAGAGGATGAAGATGGCG+TGG	-	chr3.1:68695825-68695844	MS.gene79127:CDS	50.0%
	ATGAGAGGGAGAATGAGCCA+TGG	-	chr3.1:68695582-68695601	MS.gene79127:CDS	50.0%
	ATGAGCCATGGAGGTTTGTG+TGG	-	chr3.1:68695594-68695613	MS.gene79127:intron	50.0%
	CTGAAACAAGGGAAGTCGTG+TGG	-	chr3.1:68695721-68695740	MS.gene79127:intron	50.0%
	CTTCTCCACACAAACCTCCA+TGG	+	chr3.1:68695602-68695621	None:intergenic	50.0%
!	CACACGACTTCCCTTGTTTC+AGG	+	chr3.1:68695723-68695742	None:intergenic	50.0%
	AGAGGGAGAATGAGCCATGG+AGG	-	chr3.1:68695585-68695604	MS.gene79127:CDS	55.0%
	GGATGAAGATGGCGTGGATG+AGG	-	chr3.1:68695831-68695850	MS.gene79127:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	68695582	68696072	68695582	ID=MS.gene79127
chr3.1	mRNA	68695582	68696072	68695582	ID=MS.gene79127.t1;Parent=MS.gene79127
chr3.1	exon	68696048	68696072	68696048	ID=MS.gene79127.t1.exon1;Parent=MS.gene79127.t1
chr3.1	CDS	68696048	68696072	68696048	ID=cds.MS.gene79127.t1;Parent=MS.gene79127.t1
chr3.1	exon	68695766	68695965	68695766	ID=MS.gene79127.t1.exon2;Parent=MS.gene79127.t1
chr3.1	CDS	68695766	68695965	68695766	ID=cds.MS.gene79127.t1;Parent=MS.gene79127.t1
chr3.1	exon	68695582	68695608	68695582	ID=MS.gene79127.t1.exon3;Parent=MS.gene79127.t1
chr3.1	CDS	68695582	68695608	68695582	ID=cds.MS.gene79127.t1;Parent=MS.gene79127.t1

Gene Sequence

>MS.gene79127

ATGAGAGGGAGAATGAGCCATGGAGGTTTGTGTGGAGAAGACGATGAGTTTGCTTCTTCTTCTTTTTAATGTCTTTTCAGCATTTTTTTTTAACTTTTCCGTTTTAGTGATGGCACTAGGTCGATTGACTGAGCAACTCCTGAAACAAGGGAAGTCGTGTGGTGATTCAATTCAAAACTGCTTCACTTCACTAATGGAGGTATCCATTCAGTTGAAAGAATTACAAGATGGGAAAGGAGATGAAGTAGAGGATGAAGATGGCGTGGATGAGGATAGTGACGATGATGACTCCGAAGATTATGATGAGGTTAATCTTTACAGTTTCTTCATGTATATCAGTTTTTAGTGTTTTCGTATACTTATATCTCCTTTTGTCTACAAGGTTCTGTGATTAACATGTTTTCTTGCTTACTATGTTTATTAATATTTAACAGTTCTTAATCCTGTGGGTCTGTTTAAATTAGGACTCTGAGGTTGAAGAATATGAATAA

Protein sequence

>MS.gene79127.t1

MRGRMSHGVMALGRLTEQLLKQGKSCGDSIQNCFTSLMEVSIQLKELQDGKGDEVEDEDGVDEDSDDDDSEDYDEDSEVEEYE