Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79846.t1 | XP_003613437.2 | 98.1 | 463 | 9 | 0 | 1 | 463 | 528 | 990 | 5.00E-240 | 840.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79846.t1 | B9DFG3 | 63.0 | 470 | 167 | 3 | 1 | 463 | 537 | 1006 | 4.4e-152 | 539.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79846.t1 | G7K5N2 | 98.1 | 463 | 9 | 0 | 1 | 463 | 528 | 990 | 3.6e-240 | 840.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene79846 | 0.851837 | 6.84E-61 | -1.69E-46 |
| MS.gene049151 | MS.gene79846 | 0.837302 | 5.63E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene79846 | 0.8525 | 4.43E-61 | -1.69E-46 |
| MS.gene049758 | MS.gene79846 | 0.803659 | 3.14E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene79846 | 0.824596 | 7.41E-54 | -1.69E-46 |
| MS.gene050168 | MS.gene79846 | 0.806359 | 8.55E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene79846 | 0.807035 | 6.15E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene79846 | 0.83123 | 1.88E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene79846 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene79846 | 0.841404 | 4.85E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene79846 | 0.845626 | 3.61E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene79846 | 0.811525 | 6.70E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene79846 | 0.85297 | 3.25E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene79846 | 0.803582 | 3.26E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene79846 | 0.823366 | 1.44E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene79846 | 0.854377 | 1.28E-61 | -1.69E-46 |
| MS.gene053494 | MS.gene79846 | 0.85046 | 1.67E-60 | -1.69E-46 |
| MS.gene053555 | MS.gene79846 | 0.801266 | 9.76E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene79846 | 0.816049 | 6.76E-52 | -1.69E-46 |
| MS.gene053559 | MS.gene79846 | 0.818885 | 1.55E-52 | -1.69E-46 |
| MS.gene053577 | MS.gene79846 | 0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene79846 | 0.826527 | 2.58E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene79846 | 0.815149 | 1.07E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene79846 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene79846 | 0.826721 | 2.32E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene79846 | 0.825109 | 5.61E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene79846 | 0.813703 | 2.24E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene79846 | 0.81759 | 3.05E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene79846 | 0.833577 | 4.92E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene79846 | 0.826389 | 2.79E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene79846 | 0.804008 | 2.65E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene79846 | 0.802643 | 5.09E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene79846 | 0.837288 | 5.68E-57 | -1.69E-46 |
| MS.gene056979 | MS.gene79846 | 0.840151 | 1.03E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene79846 | 0.808382 | 3.18E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene79846 | 0.870089 | 1.90E-66 | -1.69E-46 |
| MS.gene057448 | MS.gene79846 | 0.832112 | 1.14E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene79846 | 0.81581 | 7.64E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene79846 | 0.832455 | 9.36E-56 | -1.69E-46 |
| MS.gene057469 | MS.gene79846 | 0.8154 | 9.42E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene79846 | 0.818166 | 2.26E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene79846 | 0.811745 | 6.00E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene79846 | 0.857543 | 1.52E-62 | -1.69E-46 |
| MS.gene058435 | MS.gene79846 | 0.801835 | 7.46E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene79846 | 0.839454 | 1.57E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene79846 | 0.828328 | 9.55E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene79846 | 0.81011 | 1.36E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene79846 | 0.822883 | 1.87E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene79846 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene79846 | 0.825547 | 4.42E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene79846 | 0.811855 | 5.68E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene79846 | 0.845364 | 4.25E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79846.t1 | MTR_5g036660 | 97.840 | 463 | 10 | 0 | 1 | 463 | 528 | 990 | 0.0 | 921 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79846.t1 | AT1G70070 | 62.128 | 470 | 171 | 3 | 1 | 463 | 537 | 1006 | 0.0 | 590 |
Find 94 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATTGCAGGAAAATTTA+AGG | 0.138511 | 5.2:-27159780 | MS.gene79846:CDS |
| CTTCAGATGGCTGGGCGTGC+TGG | 0.172106 | 5.2:-27160207 | MS.gene79846:CDS |
| ACTCTGAACACGGTGGTTTA+TGG | 0.172637 | 5.2:-27159306 | MS.gene79846:CDS |
| TAAAGTGGTTAGACGCATTT+AGG | 0.229749 | 5.2:+27158879 | None:intergenic |
| TAAGGGCAGAGAAACGTATT+AGG | 0.244441 | 5.2:-27159762 | MS.gene79846:CDS |
| AGCGTGCAACTTTACTTCTT+TGG | 0.292744 | 5.2:+27159155 | None:intergenic |
| CTCTGAACACGGTGGTTTAT+GGG | 0.308520 | 5.2:-27159305 | MS.gene79846:CDS |
| TCTTGGAGCTTGAACGTTCC+AGG | 0.316057 | 5.2:-27159256 | MS.gene79846:CDS |
| CAGCACCTTCATTAGGAGTT+TGG | 0.317059 | 5.2:+27160145 | None:intergenic |
| AAGTTAATTGAGCAAAGTTT+TGG | 0.338780 | 5.2:-27159955 | MS.gene79846:CDS |
| CCCGATGTTCCGTTAGTTCA+AGG | 0.360849 | 5.2:-27159400 | MS.gene79846:CDS |
| CAAGGAGATTGCAGAATTGC+AGG | 0.367183 | 5.2:-27159791 | MS.gene79846:CDS |
| CACTCTTCAGCACCTTCATT+AGG | 0.367766 | 5.2:+27160138 | None:intergenic |
| TTCAGATGGCTGGGCGTGCT+GGG | 0.385541 | 5.2:-27160206 | MS.gene79846:CDS |
| GATCCAAACGTCTGACTAAT+CGG | 0.393800 | 5.2:-27159033 | MS.gene79846:CDS |
| CTCAGCAAAAGAAGTGATAC+TGG | 0.396484 | 5.2:-27160258 | MS.gene79846:CDS |
| AATGAACTGCTTCAGATGGC+TGG | 0.407138 | 5.2:-27160216 | MS.gene79846:CDS |
| GACGAGATGAAAACTTCATC+AGG | 0.407871 | 5.2:-27160000 | MS.gene79846:CDS |
| TATCCGATTAGTCAGACGTT+TGG | 0.408121 | 5.2:+27159030 | None:intergenic |
| CTCTTCTAATAATGGTTTCA+AGG | 0.410172 | 5.2:+27159699 | None:intergenic |
| AGAATTGCAGGAAAATTTAA+GGG | 0.428014 | 5.2:-27159779 | MS.gene79846:CDS |
| GTTTACTGCTTCTAATGGTA+TGG | 0.429661 | 5.2:-27160073 | MS.gene79846:CDS |
| TCGCAGTTTACTGCTTCTAA+TGG | 0.432969 | 5.2:-27160078 | MS.gene79846:CDS |
| TGTATTAATATCTAAAGCTC+TGG | 0.446120 | 5.2:+27158946 | None:intergenic |
| AAGGGCAGAGAAACGTATTA+GGG | 0.447626 | 5.2:-27159761 | MS.gene79846:CDS |
| CATCTGAAGCAGTTCATTTG+AGG | 0.451663 | 5.2:+27160221 | None:intergenic |
| CCATCATATCATGTAGCTCT+TGG | 0.452287 | 5.2:-27159487 | MS.gene79846:CDS |
| TTGGGAAAGGTCGACTCCCT+TGG | 0.462085 | 5.2:-27159601 | MS.gene79846:CDS |
| GATCTCTGGAGACATGGTCT+TGG | 0.464034 | 5.2:-27159273 | MS.gene79846:CDS |
| AACTTCATCAGGGAAAACTT+TGG | 0.466456 | 5.2:-27159989 | MS.gene79846:CDS |
| CTCTTGGCTCAGATAACTCT+TGG | 0.469381 | 5.2:-27159471 | MS.gene79846:CDS |
| TGTTATGCTGGCTGCTAAAG+AGG | 0.472502 | 5.2:-27159914 | MS.gene79846:CDS |
| GGTATCTATTTACAGAAAAG+TGG | 0.477491 | 5.2:-27159450 | MS.gene79846:CDS |
| ACTCATAATTTCTCGAGGTC+GGG | 0.488083 | 5.2:+27159372 | None:intergenic |
| GCTACATGATATGATGGTAC+AGG | 0.490168 | 5.2:+27159493 | None:intergenic |
| CCGATGTTCCGTTAGTTCAA+GGG | 0.492311 | 5.2:-27159399 | MS.gene79846:CDS |
| CACTCATAATTTCTCGAGGT+CGG | 0.494647 | 5.2:+27159371 | None:intergenic |
| TGTTAGTAGCAGTGTTATGC+TGG | 0.495742 | 5.2:-27159926 | MS.gene79846:CDS |
| ATGGGTCACAGAAGGATCTC+TGG | 0.496228 | 5.2:-27159287 | MS.gene79846:CDS |
| CCTTGAACTAACGGAACATC+GGG | 0.501935 | 5.2:+27159400 | None:intergenic |
| TATGAGTGATCTCCTTGATA+AGG | 0.505522 | 5.2:-27159356 | MS.gene79846:CDS |
| GGTGGTGGGAAAGCCCTTCG+TGG | 0.511616 | 5.2:-27160036 | MS.gene79846:CDS |
| TCAGAGAAGCTACTCAAACC+TGG | 0.521169 | 5.2:+27159238 | None:intergenic |
| GAAATAACAGCTGTTCTAGC+AGG | 0.521727 | 5.2:+27160285 | None:intergenic |
| CCCTTGAACTAACGGAACAT+CGG | 0.522108 | 5.2:+27159399 | None:intergenic |
| CCAAGAGCTACATGATATGA+TGG | 0.524587 | 5.2:+27159487 | None:intergenic |
| ATGAACTGCTTCAGATGGCT+GGG | 0.525138 | 5.2:-27160215 | MS.gene79846:CDS |
| AATTGAACCCTCAGGTTGGA+AGG | 0.531560 | 5.2:-27159002 | MS.gene79846:CDS |
| TTTATCACAGCGACAATACA+AGG | 0.536890 | 5.2:-27159809 | MS.gene79846:CDS |
| CTTCATTAGGAGTTTGGACG+AGG | 0.537266 | 5.2:+27160151 | None:intergenic |
| ACTTCATGTCCTCCTTATCA+AGG | 0.539735 | 5.2:+27159344 | None:intergenic |
| CATTGAAATATTTCTCCTAG+TGG | 0.542609 | 5.2:+27158911 | None:intergenic |
| ATTAAAACAGTATATGAGAC+AGG | 0.545363 | 5.2:-27159427 | MS.gene79846:CDS |
| CGATGTTCCGTTAGTTCAAG+GGG | 0.545809 | 5.2:-27159398 | MS.gene79846:CDS |
| CAGAAGGATCTCTGGAGACA+TGG | 0.548119 | 5.2:-27159279 | MS.gene79846:CDS |
| CGGGTATCCCCTTGAACTAA+CGG | 0.549497 | 5.2:+27159391 | None:intergenic |
| CTCGTCCAAACTCCTAATGA+AGG | 0.550003 | 5.2:-27160150 | MS.gene79846:CDS |
| GGAAAACTTTGGATGAAGCT+AGG | 0.551284 | 5.2:-27159978 | MS.gene79846:CDS |
| AACAAATTGAACCCTCAGGT+TGG | 0.551715 | 5.2:-27159006 | MS.gene79846:CDS |
| CACCGTGTTCAGAGTTAGCA+AGG | 0.561723 | 5.2:+27159314 | None:intergenic |
| AAGAAGATATCTCGTACTCA+AGG | 0.563790 | 5.2:-27159127 | MS.gene79846:CDS |
| AGGTTGGAAGGAGTTTATGC+AGG | 0.564082 | 5.2:-27158990 | MS.gene79846:CDS |
| GGCTGAATTGCGAAGACAGA+AGG | 0.568618 | 5.2:-27159740 | MS.gene79846:CDS |
| CGTAGAGGCATTGATGAAAG+TGG | 0.569588 | 5.2:-27160183 | MS.gene79846:CDS |
| CGATGTGTTTGACCCACGAA+GGG | 0.570913 | 5.2:+27160023 | None:intergenic |
| GGTTAGACGCATTTAGGAGA+GGG | 0.573907 | 5.2:+27158885 | None:intergenic |
| GTGGTGGGAAAGCCCTTCGT+GGG | 0.579956 | 5.2:-27160035 | MS.gene79846:CDS |
| GCTGGGCGTGCTGGGCGTAG+AGG | 0.584556 | 5.2:-27160198 | MS.gene79846:CDS |
| CAGTTCATTTGAGGTCAACA+AGG | 0.589035 | 5.2:+27160230 | None:intergenic |
| ATAGAACAAATTGAACCCTC+AGG | 0.589569 | 5.2:-27159010 | MS.gene79846:CDS |
| CTACATGATATGATGGTACA+GGG | 0.590670 | 5.2:+27159494 | None:intergenic |
| CTCAAATGAACTGCTTCAGA+TGG | 0.592097 | 5.2:-27160220 | MS.gene79846:CDS |
| GAGTGATCTCCTTGATAAGG+AGG | 0.601120 | 5.2:-27159353 | MS.gene79846:CDS |
| TAGCTTCTCTGAAAATGAAG+AGG | 0.603633 | 5.2:-27159227 | MS.gene79846:CDS |
| CATAAACTCCTTCCAACCTG+AGG | 0.612732 | 5.2:+27158994 | None:intergenic |
| TTGATAAGGAGGACATGAAG+TGG | 0.616263 | 5.2:-27159342 | MS.gene79846:CDS |
| TTTGAGTTTCGAAGCACCAA+GGG | 0.617215 | 5.2:+27159585 | None:intergenic |
| TCAGCAAAAGAAGTGATACT+GGG | 0.620176 | 5.2:-27160257 | MS.gene79846:CDS |
| CCGATGTGTTTGACCCACGA+AGG | 0.626481 | 5.2:+27160022 | None:intergenic |
| TGGTTAGACGCATTTAGGAG+AGG | 0.629522 | 5.2:+27158884 | None:intergenic |
| TGATAAGGAGGACATGAAGT+GGG | 0.640881 | 5.2:-27159341 | MS.gene79846:CDS |
| ATAAACTCCTTCCAACCTGA+GGG | 0.643381 | 5.2:+27158995 | None:intergenic |
| AACCTTGCTAACTCTGAACA+CGG | 0.653305 | 5.2:-27159316 | MS.gene79846:CDS |
| GGTGGTTTATGGGTCACAGA+AGG | 0.656007 | 5.2:-27159295 | MS.gene79846:CDS |
| ACGAGATGAAAACTTCATCA+GGG | 0.657064 | 5.2:-27159999 | MS.gene79846:CDS |
| GCAGTAAACTGCGACACCAG+AGG | 0.662858 | 5.2:+27160087 | None:intergenic |
| AGATCACTCATAATTTCTCG+AGG | 0.676838 | 5.2:+27159367 | None:intergenic |
| TTCTAATAATGGTTTCAAGG+CGG | 0.680101 | 5.2:+27159702 | None:intergenic |
| ACACATGTGATATATCCACT+AGG | 0.684073 | 5.2:-27158926 | MS.gene79846:CDS |
| AGACGCAGTCAAGTTTACTG+AGG | 0.688963 | 5.2:-27159080 | MS.gene79846:CDS |
| CCTTCGTGGGTCAAACACAT+CGG | 0.689897 | 5.2:-27160022 | MS.gene79846:CDS |
| TTACAGTATAGAGATTCTGA+CGG | 0.703557 | 5.2:-27159652 | MS.gene79846:CDS |
| AGGTGCTGAAGAGTGCTGCA+AGG | 0.716768 | 5.2:-27160130 | MS.gene79846:CDS |
| CTTGCTAACTCTGAACACGG+TGG | 0.759488 | 5.2:-27159313 | MS.gene79846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAATTGCAGGAAAATTTAA+GGG | - | chr5.2:27159402-27159421 | MS.gene79846:CDS | 25.0% |
| ! | ATTAAAACAGTATATGAGAC+AGG | - | chr5.2:27159754-27159773 | MS.gene79846:CDS | 25.0% |
| !! | AAGTTAATTGAGCAAAGTTT+TGG | - | chr5.2:27159226-27159245 | MS.gene79846:CDS | 25.0% |
| !! | TGTATTAATATCTAAAGCTC+TGG | + | chr5.2:27160238-27160257 | None:intergenic | 25.0% |
| !! | TTTTCGAACTCTTCTAATAA+TGG | + | chr5.2:27159493-27159512 | None:intergenic | 25.0% |
| AAGCCATAGATAGAAAAAGT+AGG | - | chr5.2:27159344-27159363 | MS.gene79846:CDS | 30.0% | |
| CAGAATTGCAGGAAAATTTA+AGG | - | chr5.2:27159401-27159420 | MS.gene79846:CDS | 30.0% | |
| CATAGATAGAAAAAGTAGGA+AGG | - | chr5.2:27159348-27159367 | MS.gene79846:CDS | 30.0% | |
| CATTGAAATATTTCTCCTAG+TGG | + | chr5.2:27160273-27160292 | None:intergenic | 30.0% | |
| CTATACTGTAAGCACAAAAA+TGG | + | chr5.2:27159520-27159539 | None:intergenic | 30.0% | |
| CTCTTCTAATAATGGTTTCA+AGG | + | chr5.2:27159485-27159504 | None:intergenic | 30.0% | |
| GGTATCTATTTACAGAAAAG+TGG | - | chr5.2:27159731-27159750 | MS.gene79846:CDS | 30.0% | |
| TCGAAACTCAAAAACATGAT+CGG | - | chr5.2:27159607-27159626 | MS.gene79846:CDS | 30.0% | |
| TTACAGTATAGAGATTCTGA+CGG | - | chr5.2:27159529-27159548 | MS.gene79846:CDS | 30.0% | |
| TTCTAATAATGGTTTCAAGG+CGG | + | chr5.2:27159482-27159501 | None:intergenic | 30.0% | |
| ! | GATTCTTTTGCACTAAATTC+AGG | - | chr5.2:27159637-27159656 | MS.gene79846:CDS | 30.0% |
| !!! | CTTCCTACTTTTTCTATCTA+TGG | + | chr5.2:27159350-27159369 | None:intergenic | 30.0% |
| AACTTCATCAGGGAAAACTT+TGG | - | chr5.2:27159192-27159211 | MS.gene79846:CDS | 35.0% | |
| AAGAAGATATCTCGTACTCA+AGG | - | chr5.2:27160054-27160073 | MS.gene79846:CDS | 35.0% | |
| ACACATGTGATATATCCACT+AGG | - | chr5.2:27160255-27160274 | MS.gene79846:CDS | 35.0% | |
| ACGAGATGAAAACTTCATCA+GGG | - | chr5.2:27159182-27159201 | MS.gene79846:CDS | 35.0% | |
| AGATCACTCATAATTTCTCG+AGG | + | chr5.2:27159817-27159836 | None:intergenic | 35.0% | |
| ATAGAACAAATTGAACCCTC+AGG | - | chr5.2:27160171-27160190 | MS.gene79846:CDS | 35.0% | |
| CTACATGATATGATGGTACA+GGG | + | chr5.2:27159690-27159709 | None:intergenic | 35.0% | |
| GTTTACTGCTTCTAATGGTA+TGG | - | chr5.2:27159108-27159127 | MS.gene79846:CDS | 35.0% | |
| TATGAGTGATCTCCTTGATA+AGG | - | chr5.2:27159825-27159844 | MS.gene79846:CDS | 35.0% | |
| TCAGCAAAAGAAGTGATACT+GGG | - | chr5.2:27158924-27158943 | MS.gene79846:CDS | 35.0% | |
| TTTATCACAGCGACAATACA+AGG | - | chr5.2:27159372-27159391 | MS.gene79846:CDS | 35.0% | |
| ! | AGTATCACTTCTTTTGCTGA+GGG | + | chr5.2:27158924-27158943 | None:intergenic | 35.0% |
| ! | TAGCTTCTCTGAAAATGAAG+AGG | - | chr5.2:27159954-27159973 | MS.gene79846:CDS | 35.0% |
| ! | TCAATTCCTGCTGTGTTTTT+GGG | - | chr5.2:27159562-27159581 | MS.gene79846:CDS | 35.0% |
| ! | TTCAATTCCTGCTGTGTTTT+TGG | - | chr5.2:27159561-27159580 | MS.gene79846:CDS | 35.0% |
| !! | TTTTGAATCTTCTTGGTGGT+GGG | - | chr5.2:27159131-27159150 | MS.gene79846:CDS | 35.0% |
| !!! | ATGGTTTTGAATCTTCTTGG+TGG | - | chr5.2:27159127-27159146 | MS.gene79846:CDS | 35.0% |
| !!! | GGTATGGTTTTGAATCTTCT+TGG | - | chr5.2:27159124-27159143 | MS.gene79846:CDS | 35.0% |
| AACAAATTGAACCCTCAGGT+TGG | - | chr5.2:27160175-27160194 | MS.gene79846:CDS | 40.0% | |
| AACCTTGCTAACTCTGAACA+CGG | - | chr5.2:27159865-27159884 | MS.gene79846:CDS | 40.0% | |
| AAGGGCAGAGAAACGTATTA+GGG | - | chr5.2:27159420-27159439 | MS.gene79846:CDS | 40.0% | |
| ACTCATAATTTCTCGAGGTC+GGG | + | chr5.2:27159812-27159831 | None:intergenic | 40.0% | |
| ACTTCATGTCCTCCTTATCA+AGG | + | chr5.2:27159840-27159859 | None:intergenic | 40.0% | |
| AGCGTGCAACTTTACTTCTT+TGG | + | chr5.2:27160029-27160048 | None:intergenic | 40.0% | |
| ATAAACTCCTTCCAACCTGA+GGG | + | chr5.2:27160189-27160208 | None:intergenic | 40.0% | |
| CACTCATAATTTCTCGAGGT+CGG | + | chr5.2:27159813-27159832 | None:intergenic | 40.0% | |
| CCAAGAGCTACATGATATGA+TGG | + | chr5.2:27159697-27159716 | None:intergenic | 40.0% | |
| CCATCATATCATGTAGCTCT+TGG | - | chr5.2:27159694-27159713 | MS.gene79846:CDS | 40.0% | |
| CTCAAATGAACTGCTTCAGA+TGG | - | chr5.2:27158961-27158980 | MS.gene79846:CDS | 40.0% | |
| CTCAGCAAAAGAAGTGATAC+TGG | - | chr5.2:27158923-27158942 | MS.gene79846:CDS | 40.0% | |
| GAAATAACAGCTGTTCTAGC+AGG | + | chr5.2:27158899-27158918 | None:intergenic | 40.0% | |
| GACGAGATGAAAACTTCATC+AGG | - | chr5.2:27159181-27159200 | MS.gene79846:CDS | 40.0% | |
| GATCCAAACGTCTGACTAAT+CGG | - | chr5.2:27160148-27160167 | MS.gene79846:CDS | 40.0% | |
| GCTACATGATATGATGGTAC+AGG | + | chr5.2:27159691-27159710 | None:intergenic | 40.0% | |
| GGAAAACTTTGGATGAAGCT+AGG | - | chr5.2:27159203-27159222 | MS.gene79846:CDS | 40.0% | |
| TAAGGGCAGAGAAACGTATT+AGG | - | chr5.2:27159419-27159438 | MS.gene79846:CDS | 40.0% | |
| TCGCAGTTTACTGCTTCTAA+TGG | - | chr5.2:27159103-27159122 | MS.gene79846:CDS | 40.0% | |
| TGATAAGGAGGACATGAAGT+GGG | - | chr5.2:27159840-27159859 | MS.gene79846:CDS | 40.0% | |
| TGTTAGTAGCAGTGTTATGC+TGG | - | chr5.2:27159255-27159274 | MS.gene79846:CDS | 40.0% | |
| TTGATAAGGAGGACATGAAG+TGG | - | chr5.2:27159839-27159858 | MS.gene79846:CDS | 40.0% | |
| ! | CAGTATCACTTCTTTTGCTG+AGG | + | chr5.2:27158925-27158944 | None:intergenic | 40.0% |
| ! | CAGTTCATTTGAGGTCAACA+AGG | + | chr5.2:27158954-27158973 | None:intergenic | 40.0% |
| ! | CATCTGAAGCAGTTCATTTG+AGG | + | chr5.2:27158963-27158982 | None:intergenic | 40.0% |
| ! | TATCCGATTAGTCAGACGTT+TGG | + | chr5.2:27160154-27160173 | None:intergenic | 40.0% |
| ! | TTTGAGTTTCGAAGCACCAA+GGG | + | chr5.2:27159599-27159618 | None:intergenic | 40.0% |
| !! | GTTTTGAATCTTCTTGGTGG+TGG | - | chr5.2:27159130-27159149 | MS.gene79846:CDS | 40.0% |
| !!! | TGCTGCAAGGTACTTTTTTC+TGG | - | chr5.2:27159064-27159083 | MS.gene79846:CDS | 40.0% |
| !!! | TTTTGAGTTTCGAAGCACCA+AGG | + | chr5.2:27159600-27159619 | None:intergenic | 40.0% |
| AATGAACTGCTTCAGATGGC+TGG | - | chr5.2:27158965-27158984 | MS.gene79846:CDS | 45.0% | |
| ACCTTTCCCAAAAACACAGC+AGG | + | chr5.2:27159571-27159590 | None:intergenic | 45.0% | |
| ACTCTGAACACGGTGGTTTA+TGG | - | chr5.2:27159875-27159894 | MS.gene79846:CDS | 45.0% | |
| AGACGCAGTCAAGTTTACTG+AGG | - | chr5.2:27160101-27160120 | MS.gene79846:CDS | 45.0% | |
| AGGTTGGAAGGAGTTTATGC+AGG | - | chr5.2:27160191-27160210 | MS.gene79846:CDS | 45.0% | |
| ATGAACTGCTTCAGATGGCT+GGG | - | chr5.2:27158966-27158985 | MS.gene79846:CDS | 45.0% | |
| CAAGGAGATTGCAGAATTGC+AGG | - | chr5.2:27159390-27159409 | MS.gene79846:CDS | 45.0% | |
| CACTCTTCAGCACCTTCATT+AGG | + | chr5.2:27159046-27159065 | None:intergenic | 45.0% | |
| CAGCACCTTCATTAGGAGTT+TGG | + | chr5.2:27159039-27159058 | None:intergenic | 45.0% | |
| CATAAACTCCTTCCAACCTG+AGG | + | chr5.2:27160190-27160209 | None:intergenic | 45.0% | |
| CCCTTGAACTAACGGAACAT+CGG | + | chr5.2:27159785-27159804 | None:intergenic | 45.0% | |
| CCGATGTTCCGTTAGTTCAA+GGG | - | chr5.2:27159782-27159801 | MS.gene79846:CDS | 45.0% | |
| CCTTGAACTAACGGAACATC+GGG | + | chr5.2:27159784-27159803 | None:intergenic | 45.0% | |
| CGATGTTCCGTTAGTTCAAG+GGG | - | chr5.2:27159783-27159802 | MS.gene79846:CDS | 45.0% | |
| CTCGTCCAAACTCCTAATGA+AGG | - | chr5.2:27159031-27159050 | MS.gene79846:CDS | 45.0% | |
| CTCTGAACACGGTGGTTTAT+GGG | - | chr5.2:27159876-27159895 | MS.gene79846:CDS | 45.0% | |
| CTCTTGGCTCAGATAACTCT+TGG | - | chr5.2:27159710-27159729 | MS.gene79846:CDS | 45.0% | |
| CTTCATTAGGAGTTTGGACG+AGG | + | chr5.2:27159033-27159052 | None:intergenic | 45.0% | |
| GAGTGATCTCCTTGATAAGG+AGG | - | chr5.2:27159828-27159847 | MS.gene79846:CDS | 45.0% | |
| TCAGAGAAGCTACTCAAACC+TGG | + | chr5.2:27159946-27159965 | None:intergenic | 45.0% | |
| ! | TGTTATGCTGGCTGCTAAAG+AGG | - | chr5.2:27159267-27159286 | MS.gene79846:CDS | 45.0% |
| ! | TTTTTCTGGACTTGAGCCTC+TGG | - | chr5.2:27159078-27159097 | MS.gene79846:CDS | 45.0% |
| !! | AATTGAACCCTCAGGTTGGA+AGG | - | chr5.2:27160179-27160198 | MS.gene79846:CDS | 45.0% |
| !! | CGTAGAGGCATTGATGAAAG+TGG | - | chr5.2:27158998-27159017 | MS.gene79846:CDS | 45.0% |
| !!! | TCCTGCTGTGTTTTTGGGAA+AGG | - | chr5.2:27159567-27159586 | MS.gene79846:CDS | 45.0% |
| ATGGGTCACAGAAGGATCTC+TGG | - | chr5.2:27159894-27159913 | MS.gene79846:CDS | 50.0% | |
| CACCGTGTTCAGAGTTAGCA+AGG | + | chr5.2:27159870-27159889 | None:intergenic | 50.0% | |
| CCCGATGTTCCGTTAGTTCA+AGG | - | chr5.2:27159781-27159800 | MS.gene79846:CDS | 50.0% | |
| CCTTCGTGGGTCAAACACAT+CGG | - | chr5.2:27159159-27159178 | MS.gene79846:CDS | 50.0% | |
| CGATGTGTTTGACCCACGAA+GGG | + | chr5.2:27159161-27159180 | None:intergenic | 50.0% | |
| CGGGTATCCCCTTGAACTAA+CGG | + | chr5.2:27159793-27159812 | None:intergenic | 50.0% | |
| CTTGCTAACTCTGAACACGG+TGG | - | chr5.2:27159868-27159887 | MS.gene79846:CDS | 50.0% | |
| GGCTGAATTGCGAAGACAGA+AGG | - | chr5.2:27159441-27159460 | MS.gene79846:CDS | 50.0% | |
| GGTGGTTTATGGGTCACAGA+AGG | - | chr5.2:27159886-27159905 | MS.gene79846:CDS | 50.0% | |
| TCTTGGAGCTTGAACGTTCC+AGG | - | chr5.2:27159925-27159944 | MS.gene79846:CDS | 50.0% | |
| ! | CAGAAGGATCTCTGGAGACA+TGG | - | chr5.2:27159902-27159921 | MS.gene79846:CDS | 50.0% |
| ! | GATCTCTGGAGACATGGTCT+TGG | - | chr5.2:27159908-27159927 | MS.gene79846:CDS | 50.0% |
| CCGATGTGTTTGACCCACGA+AGG | + | chr5.2:27159162-27159181 | None:intergenic | 55.0% | |
| GCAGTAAACTGCGACACCAG+AGG | + | chr5.2:27159097-27159116 | None:intergenic | 55.0% | |
| ! | TTGGGAAAGGTCGACTCCCT+TGG | - | chr5.2:27159580-27159599 | MS.gene79846:CDS | 55.0% |
| !! | AGGTGCTGAAGAGTGCTGCA+AGG | - | chr5.2:27159051-27159070 | MS.gene79846:CDS | 55.0% |
| TTCAGATGGCTGGGCGTGCT+GGG | - | chr5.2:27158975-27158994 | MS.gene79846:CDS | 60.0% | |
| ! | GTGGTGGGAAAGCCCTTCGT+GGG | - | chr5.2:27159146-27159165 | MS.gene79846:CDS | 60.0% |
| CTTCAGATGGCTGGGCGTGC+TGG | - | chr5.2:27158974-27158993 | MS.gene79846:CDS | 65.0% | |
| !! | GGTGGTGGGAAAGCCCTTCG+TGG | - | chr5.2:27159145-27159164 | MS.gene79846:CDS | 65.0% |
| GCTGGGCGTGCTGGGCGTAG+AGG | - | chr5.2:27158983-27159002 | MS.gene79846:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 27158893 | 27160310 | 27158893 | ID=MS.gene79846 |
| chr5.2 | mRNA | 27158893 | 27160310 | 27158893 | ID=MS.gene79846.t1;Parent=MS.gene79846 |
| chr5.2 | exon | 27158893 | 27160310 | 27158893 | ID=MS.gene79846.t1.exon1;Parent=MS.gene79846.t1 |
| chr5.2 | CDS | 27158893 | 27160310 | 27158893 | ID=cds.MS.gene79846.t1;Parent=MS.gene79846.t1 |
| Gene Sequence |
| Protein sequence |
