Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80276.t1 | XP_024639148.1 | 97.2 | 575 | 9 | 2 | 1 | 571 | 1 | 572 | 6.60E-303 | 1049.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80276.t1 | G7K1E3 | 97.0 | 575 | 9 | 3 | 1 | 571 | 1 | 571 | 4.4e-301 | 1042.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene80276 | 0.850854 | 1.30E-60 | -1.69E-46 |
| MS.gene049418 | MS.gene80276 | 0.824948 | 6.12E-54 | -1.69E-46 |
| MS.gene049622 | MS.gene80276 | 0.80343 | 3.50E-49 | -1.69E-46 |
| MS.gene049660 | MS.gene80276 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene04985 | MS.gene80276 | 0.812407 | 4.31E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene80276 | 0.903582 | 2.99E-79 | -1.69E-46 |
| MS.gene050297 | MS.gene80276 | 0.897682 | 1.11E-76 | -1.69E-46 |
| MS.gene05054 | MS.gene80276 | 0.803834 | 2.88E-49 | -1.69E-46 |
| MS.gene050648 | MS.gene80276 | 0.805818 | 1.11E-49 | -1.69E-46 |
| MS.gene051067 | MS.gene80276 | 0.812862 | 3.42E-51 | -1.69E-46 |
| MS.gene051094 | MS.gene80276 | 0.845074 | 5.09E-59 | -1.69E-46 |
| MS.gene051263 | MS.gene80276 | 0.806239 | 9.06E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene80276 | 0.846391 | 2.24E-59 | -1.69E-46 |
| MS.gene051742 | MS.gene80276 | 0.823649 | 1.24E-53 | -1.69E-46 |
| MS.gene051816 | MS.gene80276 | 0.812122 | 4.97E-51 | -1.69E-46 |
| MS.gene051955 | MS.gene80276 | 0.854698 | 1.04E-61 | -1.69E-46 |
| MS.gene052143 | MS.gene80276 | 0.830335 | 3.11E-55 | -1.69E-46 |
| MS.gene052367 | MS.gene80276 | 0.872825 | 2.36E-67 | -1.69E-46 |
| MS.gene052731 | MS.gene80276 | 0.806583 | 7.67E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene80276 | 0.82953 | 4.89E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene80276 | 0.855845 | 4.80E-62 | -1.69E-46 |
| MS.gene053417 | MS.gene80276 | 0.858621 | 7.27E-63 | -1.69E-46 |
| MS.gene05369 | MS.gene80276 | 0.825901 | 3.64E-54 | -1.69E-46 |
| MS.gene053929 | MS.gene80276 | 0.801581 | 8.42E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene80276 | 0.808192 | 3.50E-50 | -1.69E-46 |
| MS.gene054593 | MS.gene80276 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene80276 | 0.817831 | 2.69E-52 | -1.69E-46 |
| MS.gene055411 | MS.gene80276 | 0.810877 | 9.26E-51 | -1.69E-46 |
| MS.gene055578 | MS.gene80276 | 0.83494 | 2.24E-56 | -1.69E-46 |
| MS.gene055579 | MS.gene80276 | 0.813146 | 2.97E-51 | -1.69E-46 |
| MS.gene055957 | MS.gene80276 | 0.862833 | 3.83E-64 | -1.69E-46 |
| MS.gene056041 | MS.gene80276 | 0.887092 | 1.93E-72 | -1.69E-46 |
| MS.gene056042 | MS.gene80276 | 0.858065 | 1.06E-62 | -1.69E-46 |
| MS.gene056228 | MS.gene80276 | 0.800424 | 1.45E-48 | -1.69E-46 |
| MS.gene056335 | MS.gene80276 | 0.807458 | 5.01E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene80276 | 0.865311 | 6.48E-65 | -1.69E-46 |
| MS.gene057458 | MS.gene80276 | 0.819471 | 1.14E-52 | -1.69E-46 |
| MS.gene057483 | MS.gene80276 | 0.810981 | 8.79E-51 | -1.69E-46 |
| MS.gene058196 | MS.gene80276 | 0.880518 | 5.14E-70 | -1.69E-46 |
| MS.gene058197 | MS.gene80276 | 0.889799 | 1.75E-73 | -1.69E-46 |
| MS.gene058198 | MS.gene80276 | 0.889593 | 2.11E-73 | -1.69E-46 |
| MS.gene058818 | MS.gene80276 | 0.801408 | 9.13E-49 | -1.69E-46 |
| MS.gene058827 | MS.gene80276 | 0.823155 | 1.61E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene80276 | 0.889927 | 1.56E-73 | -1.69E-46 |
| MS.gene059553 | MS.gene80276 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene80276 | 0.901041 | 4.00E-78 | -1.69E-46 |
| MS.gene060492 | MS.gene80276 | 0.80435 | 2.25E-49 | -1.69E-46 |
| MS.gene060565 | MS.gene80276 | 0.897867 | 9.27E-77 | -1.69E-46 |
| MS.gene06057 | MS.gene80276 | 0.911875 | 3.70E-83 | -1.69E-46 |
| MS.gene061099 | MS.gene80276 | 0.843467 | 1.38E-58 | -1.69E-46 |
| MS.gene061260 | MS.gene80276 | 0.868207 | 7.75E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80276.t1 | MTR_5g034370 | 97.739 | 575 | 5 | 3 | 1 | 571 | 1 | 571 | 0.0 | 1143 |
| MS.gene80276.t1 | MTR_0050s0010 | 27.372 | 548 | 294 | 16 | 1 | 529 | 1 | 463 | 1.75e-47 | 174 |
| MS.gene80276.t1 | MTR_5g034380 | 94.872 | 78 | 4 | 0 | 494 | 571 | 64 | 141 | 1.16e-46 | 160 |
| MS.gene80276.t1 | MTR_5g034380 | 83.333 | 66 | 10 | 1 | 354 | 419 | 1 | 65 | 1.20e-27 | 108 |
| MS.gene80276.t1 | MTR_2g099095 | 60.331 | 121 | 48 | 0 | 1 | 121 | 1 | 121 | 9.67e-44 | 166 |
| MS.gene80276.t1 | MTR_4g068050 | 57.025 | 121 | 51 | 1 | 1 | 121 | 1 | 120 | 1.85e-41 | 159 |
| MS.gene80276.t1 | MTR_4g112035 | 49.587 | 121 | 60 | 1 | 1 | 121 | 1 | 120 | 1.91e-32 | 132 |
| MS.gene80276.t1 | MTR_2g062300 | 40.650 | 123 | 66 | 3 | 1 | 121 | 1 | 118 | 6.58e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80276.t1 | AT1G23790 | 51.017 | 590 | 198 | 17 | 1 | 571 | 1 | 518 | 0.0 | 525 |
| MS.gene80276.t1 | AT1G70340 | 49.073 | 593 | 197 | 18 | 1 | 571 | 1 | 510 | 3.30e-168 | 488 |
| MS.gene80276.t1 | AT3G14170 | 28.947 | 532 | 280 | 19 | 1 | 527 | 1 | 439 | 4.78e-47 | 172 |
| MS.gene80276.t1 | AT3G14170 | 28.947 | 532 | 279 | 19 | 1 | 527 | 1 | 438 | 9.21e-47 | 171 |
| MS.gene80276.t1 | AT1G08760 | 59.504 | 121 | 48 | 1 | 1 | 121 | 1 | 120 | 3.80e-42 | 162 |
| MS.gene80276.t1 | AT1G08760 | 38.961 | 77 | 45 | 1 | 312 | 386 | 419 | 495 | 5.72e-11 | 65.9 |
| MS.gene80276.t1 | AT4G13370 | 55.372 | 121 | 53 | 1 | 1 | 121 | 1 | 120 | 4.91e-39 | 152 |
| MS.gene80276.t1 | AT3G19610 | 44.628 | 121 | 65 | 2 | 1 | 120 | 29 | 148 | 1.71e-27 | 117 |
| MS.gene80276.t1 | AT2G31920 | 41.732 | 127 | 64 | 4 | 1 | 119 | 1 | 125 | 1.99e-20 | 95.5 |
Find 131 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACCTACATTTGACTTAAA+TGG | 0.101600 | 5.4:-24324593 | None:intergenic |
| TACTAATCAAAAGGAGATTT+TGG | 0.156140 | 5.4:+24326232 | MS.gene80276:CDS |
| TGGTACACCTGAACCTTTAA+TGG | 0.164535 | 5.4:+24324190 | MS.gene80276:CDS |
| TTTGAGCCTGGGCCTGGGTC+TGG | 0.176021 | 5.4:-24324229 | None:intergenic |
| TACATGTTTGAGCCTGGGCC+TGG | 0.220419 | 5.4:-24324235 | None:intergenic |
| GTTAGAGGCTCTTGGGGTAC+TGG | 0.256256 | 5.4:+24324269 | MS.gene80276:CDS |
| TTCACCTGTTCCGGTTCTTA+AGG | 0.274220 | 5.4:+24324133 | MS.gene80276:CDS |
| CGAGCAATCTGTGCTGCTTT+AGG | 0.274805 | 5.4:-24326533 | None:intergenic |
| CCCAAGGAGCTGAGTCTTGC+TGG | 0.308213 | 5.4:-24325524 | None:intergenic |
| CTTAGGAAAAGTTGTGCTTT+TGG | 0.311861 | 5.4:+24324503 | MS.gene80276:CDS |
| TTGAGCCTGGGCCTGGGTCT+GGG | 0.312521 | 5.4:-24324228 | None:intergenic |
| TTGATGTAAAAGCCTTGTTT+TGG | 0.312605 | 5.4:-24323993 | None:intergenic |
| GGGAGGAGTAATGGTGGAAT+TGG | 0.318272 | 5.4:+24324395 | MS.gene80276:CDS |
| CTTAGGCCCATTAAAGGTTC+AGG | 0.325269 | 5.4:-24324197 | None:intergenic |
| AGCTACTTCAGCTTCAGATT+TGG | 0.330327 | 5.4:+24326049 | MS.gene80276:CDS |
| CTGCTTGTACAATATCATTA+TGG | 0.334475 | 5.4:-24326001 | None:intergenic |
| AGAACCCGGTTCACCTGTTC+CGG | 0.339795 | 5.4:+24324124 | MS.gene80276:CDS |
| TAGTTCTGTTAGAGGCTCTT+GGG | 0.340320 | 5.4:+24324262 | MS.gene80276:CDS |
| TCACCTGTTCCGGTTCTTAA+GGG | 0.343403 | 5.4:+24324134 | MS.gene80276:CDS |
| TACCTACATTTGACTTAAAT+GGG | 0.353155 | 5.4:-24324592 | None:intergenic |
| GAATTACGATGCTCGCTTGT+TGG | 0.355819 | 5.4:-24323915 | None:intergenic |
| TGTAAGCCTAGTTCTGTTAG+AGG | 0.362039 | 5.4:+24324254 | MS.gene80276:CDS |
| GGTACACCTGAACCTTTAAT+GGG | 0.362564 | 5.4:+24324191 | MS.gene80276:CDS |
| TTGAAACAGAAGCTGGGAAT+TGG | 0.368398 | 5.4:+24326354 | MS.gene80276:CDS |
| TTATACTTAAAGTTATGAAC+TGG | 0.369520 | 5.4:+24326468 | MS.gene80276:CDS |
| CTAGTTCTGTTAGAGGCTCT+TGG | 0.370390 | 5.4:+24324261 | MS.gene80276:CDS |
| GGCTAGGCCTCTTATTACTA+TGG | 0.370646 | 5.4:-24326508 | None:intergenic |
| AACACTCGCACCTGGAATTC+TGG | 0.372129 | 5.4:+24323857 | MS.gene80276:CDS |
| CCTGGCAGACACCCTTTCAT+TGG | 0.374229 | 5.4:+24324170 | MS.gene80276:CDS |
| AGAGTTTCCTGATTGGTCTA+TGG | 0.379081 | 5.4:-24326138 | None:intergenic |
| ACTTCTGTTGGTGTTATTGA+TGG | 0.396694 | 5.4:+24325395 | MS.gene80276:CDS |
| TTGCTTAAGCTGCAAGATAC+TGG | 0.397381 | 5.4:-24326308 | None:intergenic |
| CCAGCAAGACTCAGCTCCTT+GGG | 0.398487 | 5.4:+24325524 | MS.gene80276:CDS |
| TTAGAGGCTCTTGGGGTACT+GGG | 0.405967 | 5.4:+24324270 | MS.gene80276:CDS |
| GGAGGAGTAATGGTGGAATT+GGG | 0.406171 | 5.4:+24324396 | MS.gene80276:CDS |
| GGTAAAATGAATGATGCAAA+AGG | 0.406368 | 5.4:+24324464 | MS.gene80276:CDS |
| ACATGTTTGAGCCTGGGCCT+GGG | 0.407636 | 5.4:-24324234 | None:intergenic |
| AGAATTCATCGAGAAGGCTT+TGG | 0.409546 | 5.4:+24326382 | MS.gene80276:CDS |
| ATCGAGAAGGCTTTGGAAGC+TGG | 0.409777 | 5.4:+24326389 | MS.gene80276:CDS |
| GATCAGTGTACACCGGTTAG+AGG | 0.412154 | 5.4:+24324374 | MS.gene80276:CDS |
| ATTCGGTAGAGTTTCCTGAT+TGG | 0.416885 | 5.4:-24326145 | None:intergenic |
| AAGAACCGGAACAGGTGAAC+CGG | 0.417363 | 5.4:-24324129 | None:intergenic |
| AAAAGCCCAGACCCAGGCCC+AGG | 0.420318 | 5.4:+24324223 | MS.gene80276:CDS |
| AAAACAAAGGAAGAGTCAAA+AGG | 0.421636 | 5.4:+24326419 | MS.gene80276:CDS |
| CCACTCACAGAACACCTAAC+AGG | 0.424506 | 5.4:-24324431 | None:intergenic |
| GGAAAGATGGGACACCTGTT+AGG | 0.426168 | 5.4:+24324417 | MS.gene80276:CDS |
| GAGTCTTGCTGGTAAATTCA+TGG | 0.427479 | 5.4:-24325513 | None:intergenic |
| TGATCAAAATCCAAATTAAC+CGG | 0.427714 | 5.4:-24324356 | None:intergenic |
| AAACGAAGGTGTGTTTATAA+AGG | 0.439091 | 5.4:+24326179 | MS.gene80276:CDS |
| GTAAAATGAATGATGCAAAA+GGG | 0.449678 | 5.4:+24324465 | MS.gene80276:CDS |
| AATGGTGGAATTGGGAAAGA+TGG | 0.450831 | 5.4:+24324404 | MS.gene80276:CDS |
| GGGAAAGTCCTGGGTTGCTT+AGG | 0.450973 | 5.4:+24324486 | MS.gene80276:CDS |
| TAGGCTTACATGTTTGAGCC+TGG | 0.455518 | 5.4:-24324241 | None:intergenic |
| AAGCATCTCGTAATGCTTGA+AGG | 0.455910 | 5.4:-24325759 | None:intergenic |
| CCATTACTCCTCCCTCTAAC+CGG | 0.456201 | 5.4:-24324386 | None:intergenic |
| ACCAGCAAGACTCAGCTCCT+TGG | 0.458747 | 5.4:+24325523 | MS.gene80276:CDS |
| GCACCCTTAAGAACCGGAAC+AGG | 0.461498 | 5.4:-24324137 | None:intergenic |
| AAACAAAGGAAGAGTCAAAA+GGG | 0.461629 | 5.4:+24326420 | MS.gene80276:CDS |
| GTCATCAAGTACTAATCAAA+AGG | 0.466175 | 5.4:+24326223 | MS.gene80276:CDS |
| CAAAATTCCATAGACCAATC+AGG | 0.466760 | 5.4:+24326131 | MS.gene80276:CDS |
| GGTTTAGCACCCTTAAGAAC+CGG | 0.469852 | 5.4:-24324143 | None:intergenic |
| ATTCTGGTAAAACTCTTAAA+CGG | 0.473300 | 5.4:+24323873 | MS.gene80276:CDS |
| CTTAAGCAACACAGTCAAGT+TGG | 0.473573 | 5.4:+24326322 | MS.gene80276:CDS |
| GAAAGGGTGTCTGCCAGGTA+AGG | 0.474945 | 5.4:-24324165 | None:intergenic |
| CTGAACCTTTAATGGGCCTA+AGG | 0.474948 | 5.4:+24324198 | MS.gene80276:CDS |
| AACAATACCATAGTAATAAG+AGG | 0.475846 | 5.4:+24326501 | MS.gene80276:CDS |
| CAAGAGCCTCTAACAGAACT+AGG | 0.476566 | 5.4:-24324260 | None:intergenic |
| TAAAGTTATGAACTGGGTTG+AGG | 0.488202 | 5.4:+24326475 | MS.gene80276:CDS |
| ATGGTGGAATTGGGAAAGAT+GGG | 0.488536 | 5.4:+24324405 | MS.gene80276:CDS |
| ACTTTAAGTATAAGTGATTG+AGG | 0.490591 | 5.4:-24326458 | None:intergenic |
| GTGTTTCTGAAAGAGAGAAT+AGG | 0.491749 | 5.4:+24324558 | MS.gene80276:CDS |
| TCTCAGTAATAAAATGCAGT+TGG | 0.493360 | 5.4:+24324076 | MS.gene80276:CDS |
| CCAATGAAAGGGTGTCTGCC+AGG | 0.493550 | 5.4:-24324170 | None:intergenic |
| CTCAGTAATAAAATGCAGTT+GGG | 0.499691 | 5.4:+24324077 | MS.gene80276:CDS |
| AAACAGATTGAAACAGAAGC+TGG | 0.500125 | 5.4:+24326347 | MS.gene80276:CDS |
| TTAAGCAACACAGTCAAGTT+GGG | 0.500938 | 5.4:+24326323 | MS.gene80276:CDS |
| GTAAATCGAATGCGAAGAAT+CGG | 0.506740 | 5.4:-24324021 | None:intergenic |
| TTTGACTTAAATGGGCTAGC+AGG | 0.512698 | 5.4:-24324584 | None:intergenic |
| GATGCAAAAGGGGAAAGTCC+TGG | 0.512884 | 5.4:+24324476 | MS.gene80276:CDS |
| TTAGGTGTTCTGTGAGTGGA+GGG | 0.515841 | 5.4:+24324435 | MS.gene80276:CDS |
| GGAGAAGAAAGGTTCTACCT+TGG | 0.516663 | 5.4:+24326253 | MS.gene80276:CDS |
| AGGCTTACATGTTTGAGCCT+GGG | 0.517390 | 5.4:-24324240 | None:intergenic |
| ACAAAATCATGTTGATCAGA+AGG | 0.522160 | 5.4:-24324053 | None:intergenic |
| TGTGCTGCTTTAGGATGGCT+AGG | 0.524805 | 5.4:-24326524 | None:intergenic |
| GGTTCAGGTGTACCAATGAA+AGG | 0.526111 | 5.4:-24324182 | None:intergenic |
| GCATGTCTTAACCGTGGTGG+CGG | 0.526474 | 5.4:-24325362 | None:intergenic |
| TGAACCTTTAATGGGCCTAA+GGG | 0.528581 | 5.4:+24324199 | MS.gene80276:CDS |
| CCGGTTAGAGGGAGGAGTAA+TGG | 0.528999 | 5.4:+24324386 | MS.gene80276:CDS |
| ACAATGGCAACACTCGCACC+TGG | 0.529556 | 5.4:+24323849 | None:intergenic |
| CTAAAGCAGCACAGATTGCT+CGG | 0.535752 | 5.4:+24326534 | MS.gene80276:CDS |
| CTTTAAGTATAAGTGATTGA+GGG | 0.548171 | 5.4:-24326457 | None:intergenic |
| AACCGTTCAAAACATGTAGC+AGG | 0.550629 | 5.4:-24325969 | None:intergenic |
| CCTGTTAGGTGTTCTGTGAG+TGG | 0.551132 | 5.4:+24324431 | MS.gene80276:CDS |
| TAAAATGAATGATGCAAAAG+GGG | 0.552990 | 5.4:+24324466 | MS.gene80276:CDS |
| ATGCAAAAGGGGAAAGTCCT+GGG | 0.556764 | 5.4:+24324477 | MS.gene80276:CDS |
| GTTCAGGTGTACCAATGAAA+GGG | 0.557702 | 5.4:-24324181 | None:intergenic |
| GTTTATAGAATTCATCGAGA+AGG | 0.564481 | 5.4:+24326376 | MS.gene80276:CDS |
| AACAGATTGAAACAGAAGCT+GGG | 0.564973 | 5.4:+24326348 | MS.gene80276:CDS |
| AGTCTTGCTGGTAAATTCAT+GGG | 0.565122 | 5.4:-24325512 | None:intergenic |
| ATCAGTGTACACCGGTTAGA+GGG | 0.566216 | 5.4:+24324375 | MS.gene80276:CDS |
| CAATCTGTGCTGCTTTAGGA+TGG | 0.570007 | 5.4:-24326529 | None:intergenic |
| GTTAGGTGTTCTGTGAGTGG+AGG | 0.570599 | 5.4:+24324434 | MS.gene80276:CDS |
| GAGATCGGCGGGGACGATGT+CGG | 0.571188 | 5.4:-24323952 | None:intergenic |
| AAGACTCAGCTCCTTGGGAA+AGG | 0.576060 | 5.4:+24325529 | MS.gene80276:CDS |
| AAGAGTCTCTTCCCAAAACA+AGG | 0.582342 | 5.4:+24323981 | MS.gene80276:CDS |
| AGCATCTCGTAATGCTTGAA+GGG | 0.586284 | 5.4:-24325758 | None:intergenic |
| AGAACCGGAACAGGTGAACC+GGG | 0.590619 | 5.4:-24324128 | None:intergenic |
| CTCTTAAACGGTCTAAACAC+CGG | 0.596886 | 5.4:+24323885 | MS.gene80276:CDS |
| CTCGCTTGTTGGTTTCACGC+CGG | 0.597156 | 5.4:-24323904 | None:intergenic |
| AGTTCTGTTAGAGGCTCTTG+GGG | 0.597629 | 5.4:+24324263 | MS.gene80276:CDS |
| AAGAAGAAGAATGATGATGA+TGG | 0.597763 | 5.4:+24324296 | MS.gene80276:CDS |
| TATACTTAAAGTTATGAACT+GGG | 0.600506 | 5.4:+24326469 | MS.gene80276:CDS |
| AAAGGGTGTCTGCCAGGTAA+GGG | 0.601146 | 5.4:-24324164 | None:intergenic |
| TTGCTGGTAAATTCATGGGT+AGG | 0.606986 | 5.4:-24325508 | None:intergenic |
| AAGGGTGCTAAACCCTTACC+TGG | 0.613073 | 5.4:+24324152 | MS.gene80276:CDS |
| GCAAAATAGCAGGAAAAGAG+AGG | 0.637242 | 5.4:+24325332 | MS.gene80276:intron |
| AGACTGAGATTTCTGTTGAG+AGG | 0.642630 | 5.4:-24325447 | None:intergenic |
| GAGGCTCTTGGGGTACTGGG+AGG | 0.653731 | 5.4:+24324273 | MS.gene80276:CDS |
| AACAAAGGAAGAGTCAAAAG+GGG | 0.656903 | 5.4:+24326421 | MS.gene80276:CDS |
| AAGAAGAATGATGATGATGG+TGG | 0.661337 | 5.4:+24324299 | MS.gene80276:CDS |
| GTTAGAGGGAGGAGTAATGG+TGG | 0.665104 | 5.4:+24324389 | MS.gene80276:CDS |
| GCAAGAGTGACGACTTCTGT+TGG | 0.673208 | 5.4:+24325383 | MS.gene80276:CDS |
| CTTGCATGTCTTAACCGTGG+TGG | 0.675866 | 5.4:-24325365 | None:intergenic |
| AGTGTACACCGGTTAGAGGG+AGG | 0.675946 | 5.4:+24324378 | MS.gene80276:CDS |
| AATCAAATGTGTCAAAACGA+AGG | 0.676051 | 5.4:+24326165 | MS.gene80276:CDS |
| AAATAGCAGGAAAAGAGAGG+TGG | 0.685301 | 5.4:+24325335 | MS.gene80276:intron |
| TATGTTGATAGATTAGAACC+CGG | 0.693093 | 5.4:+24324110 | MS.gene80276:CDS |
| GGATCGAACTACTGTCTCAG+TGG | 0.695217 | 5.4:-24325785 | None:intergenic |
| ACTCTTGCATGTCTTAACCG+TGG | 0.707486 | 5.4:-24325368 | None:intergenic |
| ATAACCTCGTGTAAAACATG+CGG | 0.722750 | 5.4:-24326107 | None:intergenic |
| GAGGTGGTACTCCGCCACCA+CGG | 0.740756 | 5.4:+24325351 | MS.gene80276:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGGATTTAAATAAAATTC+AGG | - | chr5.4:24325653-24325672 | None:intergenic | 15.0% |
| !! | AAGGATTTAAATAAAATTCA+GGG | - | chr5.4:24325652-24325671 | None:intergenic | 15.0% |
| !!! | ATTTTTGAACTTTTTCTTTT+AGG | + | chr5.4:24325907-24325926 | MS.gene80276:intron | 15.0% |
| !! | AATAAGGAATACATACTTTA+GGG | - | chr5.4:24325809-24325828 | None:intergenic | 20.0% |
| !! | AATGTTTAGAAATTTAAGCT+AGG | + | chr5.4:24324669-24324688 | MS.gene80276:intron | 20.0% |
| !! | CAACTAAACAATTGTAATTT+AGG | + | chr5.4:24325072-24325091 | MS.gene80276:intron | 20.0% |
| !! | TATACTTAAAGTTATGAACT+GGG | + | chr5.4:24326469-24326488 | MS.gene80276:CDS | 20.0% |
| !! | TGTGTTTATAAAGGAAAAAT+GGG | + | chr5.4:24326188-24326207 | MS.gene80276:CDS | 20.0% |
| !! | TTATACTTAAAGTTATGAAC+TGG | + | chr5.4:24326468-24326487 | MS.gene80276:CDS | 20.0% |
| !!! | ATTCTTTCATTTTTTTTGTG+TGG | + | chr5.4:24324634-24324653 | MS.gene80276:intron | 20.0% |
| !!! | CCTTATTCAATTCTATTTTT+GGG | + | chr5.4:24325822-24325841 | MS.gene80276:intron | 20.0% |
| !!! | CTTATTCAATTCTATTTTTG+GGG | + | chr5.4:24325823-24325842 | MS.gene80276:intron | 20.0% |
| !!! | TACATTTTTGTTAAAGCTAA+AGG | + | chr5.4:24325552-24325571 | MS.gene80276:intron | 20.0% |
| !!! | TCCTTATTCAATTCTATTTT+TGG | + | chr5.4:24325821-24325840 | MS.gene80276:intron | 20.0% |
| ! | AACAATACCATAGTAATAAG+AGG | + | chr5.4:24326501-24326520 | MS.gene80276:CDS | 25.0% |
| ! | ACTTTAAGTATAAGTGATTG+AGG | - | chr5.4:24326461-24326480 | None:intergenic | 25.0% |
| ! | ATTCTGGTAAAACTCTTAAA+CGG | + | chr5.4:24323873-24323892 | MS.gene80276:CDS | 25.0% |
| ! | CCCAAAAATAGAATTGAATA+AGG | - | chr5.4:24325825-24325844 | None:intergenic | 25.0% |
| ! | CTTTAAGTATAAGTGATTGA+GGG | - | chr5.4:24326460-24326479 | None:intergenic | 25.0% |
| ! | GAATAAGGAATACATACTTT+AGG | - | chr5.4:24325810-24325829 | None:intergenic | 25.0% |
| ! | GTAAAATGAATGATGCAAAA+GGG | + | chr5.4:24324465-24324484 | MS.gene80276:CDS | 25.0% |
| ! | GTGTGTTTATAAAGGAAAAA+TGG | + | chr5.4:24326187-24326206 | MS.gene80276:CDS | 25.0% |
| ! | TAAAATGAATGATGCAAAAG+GGG | + | chr5.4:24324466-24324485 | MS.gene80276:CDS | 25.0% |
| ! | TGATCAAAATCCAAATTAAC+CGG | - | chr5.4:24324359-24324378 | None:intergenic | 25.0% |
| !! | GATTTTTAAACCGGTTAATT+TGG | + | chr5.4:24324346-24324365 | MS.gene80276:CDS | 25.0% |
| !! | TACCTACATTTGACTTAAAT+GGG | - | chr5.4:24324595-24324614 | None:intergenic | 25.0% |
| !! | TACTAATCAAAAGGAGATTT+TGG | + | chr5.4:24326232-24326251 | MS.gene80276:CDS | 25.0% |
| !! | TTAACCGGTTTAAAAATCAT+CGG | - | chr5.4:24324344-24324363 | None:intergenic | 25.0% |
| !! | TTCTCATCATTTTCAACAAT+TGG | - | chr5.4:24326281-24326300 | None:intergenic | 25.0% |
| !!! | AGTGAAATTGTGATTAGTTT+GGG | + | chr5.4:24324943-24324962 | MS.gene80276:intron | 25.0% |
| AAAACAAAGGAAGAGTCAAA+AGG | + | chr5.4:24326419-24326438 | MS.gene80276:CDS | 30.0% | |
| AAACAAAGGAAGAGTCAAAA+GGG | + | chr5.4:24326420-24326439 | MS.gene80276:CDS | 30.0% | |
| AATCAAATGTGTCAAAACGA+AGG | + | chr5.4:24326165-24326184 | MS.gene80276:CDS | 30.0% | |
| ACAAAATCATGTTGATCAGA+AGG | - | chr5.4:24324056-24324075 | None:intergenic | 30.0% | |
| ACTATTTCAGTCCTAAACTT+TGG | + | chr5.4:24325596-24325615 | MS.gene80276:intron | 30.0% | |
| ATATTGCAATCCTAGATACT+AGG | - | chr5.4:24325243-24325262 | None:intergenic | 30.0% | |
| CCTTAAAATGAGTGTAATTG+AGG | + | chr5.4:24324728-24324747 | MS.gene80276:intron | 30.0% | |
| CTATTTCAGTCCTAAACTTT+GGG | + | chr5.4:24325597-24325616 | MS.gene80276:intron | 30.0% | |
| CTCAGTAATAAAATGCAGTT+GGG | + | chr5.4:24324077-24324096 | MS.gene80276:CDS | 30.0% | |
| CTGCTTGTACAATATCATTA+TGG | - | chr5.4:24326004-24326023 | None:intergenic | 30.0% | |
| GATTATTGTAGACACATCAA+AGG | - | chr5.4:24325671-24325690 | None:intergenic | 30.0% | |
| GGTAAAATGAATGATGCAAA+AGG | + | chr5.4:24324464-24324483 | MS.gene80276:CDS | 30.0% | |
| GTCATCAAGTACTAATCAAA+AGG | + | chr5.4:24326223-24326242 | MS.gene80276:CDS | 30.0% | |
| GTTATGTTTATGCGAAATTG+AGG | + | chr5.4:24324792-24324811 | MS.gene80276:intron | 30.0% | |
| GTTTATAGAATTCATCGAGA+AGG | + | chr5.4:24326376-24326395 | MS.gene80276:CDS | 30.0% | |
| TATGTAAAGCTAACATATGC+CGG | - | chr5.4:24324840-24324859 | None:intergenic | 30.0% | |
| TCTCAGTAATAAAATGCAGT+TGG | + | chr5.4:24324076-24324095 | MS.gene80276:CDS | 30.0% | |
| TGATTATTGTGCAAAATAGC+AGG | + | chr5.4:24325322-24325341 | MS.gene80276:intron | 30.0% | |
| ! | AAACGAAGGTGTGTTTATAA+AGG | + | chr5.4:24326179-24326198 | MS.gene80276:CDS | 30.0% |
| ! | AAGAAGAAGAATGATGATGA+TGG | + | chr5.4:24324296-24324315 | MS.gene80276:CDS | 30.0% |
| ! | CCTCAATTACACTCATTTTA+AGG | - | chr5.4:24324731-24324750 | None:intergenic | 30.0% |
| ! | GAGTGAAATTGTGATTAGTT+TGG | + | chr5.4:24324942-24324961 | MS.gene80276:intron | 30.0% |
| ! | GTACCTACATTTGACTTAAA+TGG | - | chr5.4:24324596-24324615 | None:intergenic | 30.0% |
| ! | TATGTTGATAGATTAGAACC+CGG | + | chr5.4:24324110-24324129 | MS.gene80276:CDS | 30.0% |
| ! | TGTATTTTATGTTGCATGAC+AGG | + | chr5.4:24325699-24325718 | MS.gene80276:intron | 30.0% |
| !! | AGCTGGTTTGAAAAAAACAA+AGG | + | chr5.4:24326406-24326425 | MS.gene80276:CDS | 30.0% |
| !! | ATTTTCAACAATTGGTTCCA+AGG | - | chr5.4:24326273-24326292 | None:intergenic | 30.0% |
| !! | TCGTTTTGACACATTTGATT+CGG | - | chr5.4:24326165-24326184 | None:intergenic | 30.0% |
| !!! | TGATGTAAAAGCCTTGTTTT+GGG | - | chr5.4:24323995-24324014 | None:intergenic | 30.0% |
| !!! | TTGATGTAAAAGCCTTGTTT+TGG | - | chr5.4:24323996-24324015 | None:intergenic | 30.0% |
| AAACAGATTGAAACAGAAGC+TGG | + | chr5.4:24326347-24326366 | MS.gene80276:CDS | 35.0% | |
| AACAAAGGAAGAGTCAAAAG+GGG | + | chr5.4:24326421-24326440 | MS.gene80276:CDS | 35.0% | |
| AACAGATTGAAACAGAAGCT+GGG | + | chr5.4:24326348-24326367 | MS.gene80276:CDS | 35.0% | |
| AACTGCAATTGATGTCTTTC+AGG | + | chr5.4:24324975-24324994 | MS.gene80276:intron | 35.0% | |
| AAGGCTGCAAAAACATCAAA+AGG | - | chr5.4:24324712-24324731 | None:intergenic | 35.0% | |
| ACAAAAATGTACCTTTCCCA+AGG | - | chr5.4:24325543-24325562 | None:intergenic | 35.0% | |
| AGCCCATTTAAGTCAAATGT+AGG | + | chr5.4:24324590-24324609 | MS.gene80276:intron | 35.0% | |
| AGGCTGCAAAAACATCAAAA+GGG | - | chr5.4:24324711-24324730 | None:intergenic | 35.0% | |
| AGTCTTGCTGGTAAATTCAT+GGG | - | chr5.4:24325515-24325534 | None:intergenic | 35.0% | |
| ATAACCTCGTGTAAAACATG+CGG | - | chr5.4:24326110-24326129 | None:intergenic | 35.0% | |
| CAAAATTCCATAGACCAATC+AGG | + | chr5.4:24326131-24326150 | MS.gene80276:CDS | 35.0% | |
| CCTGAAAATGAGTGTAATTG+AGG | + | chr5.4:24324998-24325017 | MS.gene80276:intron | 35.0% | |
| GTAAATCGAATGCGAAGAAT+CGG | - | chr5.4:24324024-24324043 | None:intergenic | 35.0% | |
| TAAAGTTATGAACTGGGTTG+AGG | + | chr5.4:24326475-24326494 | MS.gene80276:CDS | 35.0% | |
| TGATATCACAGCCATATTTG+CGG | + | chr5.4:24325625-24325644 | MS.gene80276:intron | 35.0% | |
| TGATGGAGTTACTCAAAAAG+AGG | + | chr5.4:24325412-24325431 | MS.gene80276:CDS | 35.0% | |
| TTAAAAATCATCGGCGAAGA+CGG | - | chr5.4:24324335-24324354 | None:intergenic | 35.0% | |
| TTAAGCAACACAGTCAAGTT+GGG | + | chr5.4:24326323-24326342 | MS.gene80276:CDS | 35.0% | |
| ! | AAGAGTTTTACCAGAATTCC+AGG | - | chr5.4:24323870-24323889 | None:intergenic | 35.0% |
| ! | CCTCAATTACACTCATTTTC+AGG | - | chr5.4:24325001-24325020 | None:intergenic | 35.0% |
| ! | CTTAGGAAAAGTTGTGCTTT+TGG | + | chr5.4:24324503-24324522 | MS.gene80276:CDS | 35.0% |
| ! | GTGTTTCTGAAAGAGAGAAT+AGG | + | chr5.4:24324558-24324577 | MS.gene80276:CDS | 35.0% |
| ! | TATCTGTGTTGGTGTTTCAT+AGG | + | chr5.4:24324899-24324918 | MS.gene80276:intron | 35.0% |
| ! | TTCGCCGATGATTTTTAAAC+CGG | + | chr5.4:24324337-24324356 | MS.gene80276:CDS | 35.0% |
| !! | AAGAAGAATGATGATGATGG+TGG | + | chr5.4:24324299-24324318 | MS.gene80276:CDS | 35.0% |
| !! | AAGGAGATTTTGGAGAAGAA+AGG | + | chr5.4:24326242-24326261 | MS.gene80276:CDS | 35.0% |
| !! | ACTTCTGTTGGTGTTATTGA+TGG | + | chr5.4:24325395-24325414 | MS.gene80276:CDS | 35.0% |
| !! | TACATGTTTTGAACGGTTTC+TGG | + | chr5.4:24325974-24325993 | MS.gene80276:CDS | 35.0% |
| !!! | GTGCTTTTGGTTCTTCTAAT+GGG | + | chr5.4:24324516-24324535 | MS.gene80276:CDS | 35.0% |
| !!! | TGTGCTTTTGGTTCTTCTAA+TGG | + | chr5.4:24324515-24324534 | MS.gene80276:CDS | 35.0% |
| AAATAGCAGGAAAAGAGAGG+TGG | + | chr5.4:24325335-24325354 | MS.gene80276:intron | 40.0% | |
| AAATTCAGGGACCGCAAATA+TGG | - | chr5.4:24325639-24325658 | None:intergenic | 40.0% | |
| AACCGTTCAAAACATGTAGC+AGG | - | chr5.4:24325972-24325991 | None:intergenic | 40.0% | |
| AAGAGTCTCTTCCCAAAACA+AGG | + | chr5.4:24323981-24324000 | MS.gene80276:CDS | 40.0% | |
| AAGCATCTCGTAATGCTTGA+AGG | - | chr5.4:24325762-24325781 | None:intergenic | 40.0% | |
| AGAATTCATCGAGAAGGCTT+TGG | + | chr5.4:24326382-24326401 | MS.gene80276:CDS | 40.0% | |
| AGACTGAGATTTCTGTTGAG+AGG | - | chr5.4:24325450-24325469 | None:intergenic | 40.0% | |
| AGCATCTCGTAATGCTTGAA+GGG | - | chr5.4:24325761-24325780 | None:intergenic | 40.0% | |
| AGCTACTTCAGCTTCAGATT+TGG | + | chr5.4:24326049-24326068 | MS.gene80276:CDS | 40.0% | |
| ATTCGGTAGAGTTTCCTGAT+TGG | - | chr5.4:24326148-24326167 | None:intergenic | 40.0% | |
| CTCTTAAACGGTCTAAACAC+CGG | + | chr5.4:24323885-24323904 | MS.gene80276:CDS | 40.0% | |
| CTTAAGCAACACAGTCAAGT+TGG | + | chr5.4:24326322-24326341 | MS.gene80276:CDS | 40.0% | |
| GAGTCTTGCTGGTAAATTCA+TGG | - | chr5.4:24325516-24325535 | None:intergenic | 40.0% | |
| GCAAAATAGCAGGAAAAGAG+AGG | + | chr5.4:24325332-24325351 | MS.gene80276:intron | 40.0% | |
| GGTACACCTGAACCTTTAAT+GGG | + | chr5.4:24324191-24324210 | MS.gene80276:CDS | 40.0% | |
| GTGTTTCATAGGAATCAGCT+GGG | + | chr5.4:24324910-24324929 | MS.gene80276:intron | 40.0% | |
| GTTCAGGTGTACCAATGAAA+GGG | - | chr5.4:24324184-24324203 | None:intergenic | 40.0% | |
| TATCACGCTACCCAAAGTTT+AGG | - | chr5.4:24325610-24325629 | None:intergenic | 40.0% | |
| TGCAATTCTGCCTAGTATCT+AGG | + | chr5.4:24325230-24325249 | MS.gene80276:intron | 40.0% | |
| TGGTACACCTGAACCTTTAA+TGG | + | chr5.4:24324190-24324209 | MS.gene80276:CDS | 40.0% | |
| TGTAGTGTACGTATCTGTGT+TGG | + | chr5.4:24324888-24324907 | MS.gene80276:intron | 40.0% | |
| TTGAAACAGAAGCTGGGAAT+TGG | + | chr5.4:24326354-24326373 | MS.gene80276:CDS | 40.0% | |
| TTGCTGGTAAATTCATGGGT+AGG | - | chr5.4:24325511-24325530 | None:intergenic | 40.0% | |
| TTGCTTAAGCTGCAAGATAC+TGG | - | chr5.4:24326311-24326330 | None:intergenic | 40.0% | |
| ! | AATGGTGGAATTGGGAAAGA+TGG | + | chr5.4:24324404-24324423 | MS.gene80276:CDS | 40.0% |
| ! | ATGGTGGAATTGGGAAAGAT+GGG | + | chr5.4:24324405-24324424 | MS.gene80276:CDS | 40.0% |
| ! | TAGTTCTGTTAGAGGCTCTT+GGG | + | chr5.4:24324262-24324281 | MS.gene80276:CDS | 40.0% |
| ! | TGAACCTTTAATGGGCCTAA+GGG | + | chr5.4:24324199-24324218 | MS.gene80276:CDS | 40.0% |
| ! | TTTTCCCTTAGGCCCATTAA+AGG | - | chr5.4:24324206-24324225 | None:intergenic | 40.0% |
| !! | AGAGTTTCCTGATTGGTCTA+TGG | - | chr5.4:24326141-24326160 | None:intergenic | 40.0% |
| !! | CACCTGCTACATGTTTTGAA+CGG | + | chr5.4:24325967-24325986 | MS.gene80276:CDS | 40.0% |
| !! | GGATTTTGATCAGTGTACAC+CGG | + | chr5.4:24324367-24324386 | MS.gene80276:CDS | 40.0% |
| !! | TGTAAGCCTAGTTCTGTTAG+AGG | + | chr5.4:24324254-24324273 | MS.gene80276:CDS | 40.0% |
| !! | TTTGACTTAAATGGGCTAGC+AGG | - | chr5.4:24324587-24324606 | None:intergenic | 40.0% |
| ACTCTTGCATGTCTTAACCG+TGG | - | chr5.4:24325371-24325390 | None:intergenic | 45.0% | |
| AGGCTTACATGTTTGAGCCT+GGG | - | chr5.4:24324243-24324262 | None:intergenic | 45.0% | |
| AGTTCTGTTAGAGGCTCTTG+GGG | + | chr5.4:24324263-24324282 | MS.gene80276:CDS | 45.0% | |
| ATGCAAAAGGGGAAAGTCCT+GGG | + | chr5.4:24324477-24324496 | MS.gene80276:CDS | 45.0% | |
| CAAGAGCCTCTAACAGAACT+AGG | - | chr5.4:24324263-24324282 | None:intergenic | 45.0% | |
| CTAAAGCAGCACAGATTGCT+CGG | + | chr5.4:24326534-24326553 | MS.gene80276:CDS | 45.0% | |
| CTTAGGCCCATTAAAGGTTC+AGG | - | chr5.4:24324200-24324219 | None:intergenic | 45.0% | |
| GAATTACGATGCTCGCTTGT+TGG | - | chr5.4:24323918-24323937 | None:intergenic | 45.0% | |
| GGAGAAGAAAGGTTCTACCT+TGG | + | chr5.4:24326253-24326272 | MS.gene80276:CDS | 45.0% | |
| GGCTAGGCCTCTTATTACTA+TGG | - | chr5.4:24326511-24326530 | None:intergenic | 45.0% | |
| GGTGTTTCATAGGAATCAGC+TGG | + | chr5.4:24324909-24324928 | MS.gene80276:intron | 45.0% | |
| GGTTCAGGTGTACCAATGAA+AGG | - | chr5.4:24324185-24324204 | None:intergenic | 45.0% | |
| GGTTTAGCACCCTTAAGAAC+CGG | - | chr5.4:24324146-24324165 | None:intergenic | 45.0% | |
| TAGGCTTACATGTTTGAGCC+TGG | - | chr5.4:24324244-24324263 | None:intergenic | 45.0% | |
| TCACCTGTTCCGGTTCTTAA+GGG | + | chr5.4:24324134-24324153 | MS.gene80276:CDS | 45.0% | |
| TTAGGTGTTCTGTGAGTGGA+GGG | + | chr5.4:24324435-24324454 | MS.gene80276:CDS | 45.0% | |
| TTCACCTGTTCCGGTTCTTA+AGG | + | chr5.4:24324133-24324152 | MS.gene80276:CDS | 45.0% | |
| ! | ACAACCGCATGTTTTACACG+AGG | + | chr5.4:24326103-24326122 | MS.gene80276:CDS | 45.0% |
| ! | ATCAGTGTACACCGGTTAGA+GGG | + | chr5.4:24324375-24324394 | MS.gene80276:CDS | 45.0% |
| ! | CAACTTTTCCTAAGCAACCC+AGG | - | chr5.4:24324497-24324516 | None:intergenic | 45.0% |
| ! | CTGAACCTTTAATGGGCCTA+AGG | + | chr5.4:24324198-24324217 | MS.gene80276:CDS | 45.0% |
| ! | GAGACTCTTTTCGTCGAGAT+CGG | - | chr5.4:24323970-24323989 | None:intergenic | 45.0% |
| ! | GGAGGAGTAATGGTGGAATT+GGG | + | chr5.4:24324396-24324415 | MS.gene80276:CDS | 45.0% |
| !! | CAATCTGTGCTGCTTTAGGA+TGG | - | chr5.4:24326532-24326551 | None:intergenic | 45.0% |
| !! | CTAGTTCTGTTAGAGGCTCT+TGG | + | chr5.4:24324261-24324280 | MS.gene80276:CDS | 45.0% |
| AACACTCGCACCTGGAATTC+TGG | + | chr5.4:24323857-24323876 | MS.gene80276:CDS | 50.0% | |
| AAGAACCGGAACAGGTGAAC+CGG | - | chr5.4:24324132-24324151 | None:intergenic | 50.0% | |
| AAGACTCAGCTCCTTGGGAA+AGG | + | chr5.4:24325529-24325548 | MS.gene80276:CDS | 50.0% | |
| CCACTCACAGAACACCTAAC+AGG | - | chr5.4:24324434-24324453 | None:intergenic | 50.0% | |
| CCATTACTCCTCCCTCTAAC+CGG | - | chr5.4:24324389-24324408 | None:intergenic | 50.0% | |
| CCTGTTAGGTGTTCTGTGAG+TGG | + | chr5.4:24324431-24324450 | MS.gene80276:CDS | 50.0% | |
| CTTGCATGTCTTAACCGTGG+TGG | - | chr5.4:24325368-24325387 | None:intergenic | 50.0% | |
| GATGCAAAAGGGGAAAGTCC+TGG | + | chr5.4:24324476-24324495 | MS.gene80276:CDS | 50.0% | |
| GCAAGAGTGACGACTTCTGT+TGG | + | chr5.4:24325383-24325402 | MS.gene80276:CDS | 50.0% | |
| GGAAAGATGGGACACCTGTT+AGG | + | chr5.4:24324417-24324436 | MS.gene80276:CDS | 50.0% | |
| GGATCGAACTACTGTCTCAG+TGG | - | chr5.4:24325788-24325807 | None:intergenic | 50.0% | |
| GTTAGAGGGAGGAGTAATGG+TGG | + | chr5.4:24324389-24324408 | MS.gene80276:CDS | 50.0% | |
| GTTAGGTGTTCTGTGAGTGG+AGG | + | chr5.4:24324434-24324453 | MS.gene80276:CDS | 50.0% | |
| ! | ACTCTTTTCGTCGAGATCGG+CGG | - | chr5.4:24323967-24323986 | None:intergenic | 50.0% |
| ! | GATCAGTGTACACCGGTTAG+AGG | + | chr5.4:24324374-24324393 | MS.gene80276:CDS | 50.0% |
| ! | GGGAGGAGTAATGGTGGAAT+TGG | + | chr5.4:24324395-24324414 | MS.gene80276:CDS | 50.0% |
| ! | TCTGTGAGTGGAGGGCTTTT+TGG | + | chr5.4:24324443-24324462 | MS.gene80276:CDS | 50.0% |
| ! | TTAGAGGCTCTTGGGGTACT+GGG | + | chr5.4:24324270-24324289 | MS.gene80276:CDS | 50.0% |
| !! | AAAGGGTGTCTGCCAGGTAA+GGG | - | chr5.4:24324167-24324186 | None:intergenic | 50.0% |
| !! | AAGGGTGCTAAACCCTTACC+TGG | + | chr5.4:24324152-24324171 | MS.gene80276:CDS | 50.0% |
| !! | ATCGAGAAGGCTTTGGAAGC+TGG | + | chr5.4:24326389-24326408 | MS.gene80276:CDS | 50.0% |
| !! | CGAGCAATCTGTGCTGCTTT+AGG | - | chr5.4:24326536-24326555 | None:intergenic | 50.0% |
| !! | TGTGCTGCTTTAGGATGGCT+AGG | - | chr5.4:24326527-24326546 | None:intergenic | 50.0% |
| AAGGGAAAAAGCCCAGACCC+AGG | + | chr5.4:24324217-24324236 | MS.gene80276:CDS | 55.0% | |
| ACATGTTTGAGCCTGGGCCT+GGG | - | chr5.4:24324237-24324256 | None:intergenic | 55.0% | |
| ACCAGCAAGACTCAGCTCCT+TGG | + | chr5.4:24325523-24325542 | MS.gene80276:CDS | 55.0% | |
| AGAACCCGGTTCACCTGTTC+CGG | + | chr5.4:24324124-24324143 | MS.gene80276:CDS | 55.0% | |
| AGAACCGGAACAGGTGAACC+GGG | - | chr5.4:24324131-24324150 | None:intergenic | 55.0% | |
| AGGTTCTATCAGCCTCTCCG+TGG | + | chr5.4:24324812-24324831 | MS.gene80276:intron | 55.0% | |
| CCAGCAAGACTCAGCTCCTT+GGG | + | chr5.4:24325524-24325543 | MS.gene80276:CDS | 55.0% | |
| CCGGTTAGAGGGAGGAGTAA+TGG | + | chr5.4:24324386-24324405 | MS.gene80276:CDS | 55.0% | |
| CCTGGCAGACACCCTTTCAT+TGG | + | chr5.4:24324170-24324189 | MS.gene80276:CDS | 55.0% | |
| GCACCCTTAAGAACCGGAAC+AGG | - | chr5.4:24324140-24324159 | None:intergenic | 55.0% | |
| GCATGTCTTAACCGTGGTGG+CGG | - | chr5.4:24325365-24325384 | None:intergenic | 55.0% | |
| GGGAAAGTCCTGGGTTGCTT+AGG | + | chr5.4:24324486-24324505 | MS.gene80276:CDS | 55.0% | |
| GTTAGAGGCTCTTGGGGTAC+TGG | + | chr5.4:24324269-24324288 | MS.gene80276:CDS | 55.0% | |
| TACATGTTTGAGCCTGGGCC+TGG | - | chr5.4:24324238-24324257 | None:intergenic | 55.0% | |
| ! | AGTGTACACCGGTTAGAGGG+AGG | + | chr5.4:24324378-24324397 | MS.gene80276:CDS | 55.0% |
| ! | CTCTTTTCGTCGAGATCGGC+GGG | - | chr5.4:24323966-24323985 | None:intergenic | 55.0% |
| ! | GCTAACATATGCCGGTGCCA+CGG | - | chr5.4:24324832-24324851 | None:intergenic | 55.0% |
| ! | TCTTTTCGTCGAGATCGGCG+GGG | - | chr5.4:24323965-24323984 | None:intergenic | 55.0% |
| !! | CCAATGAAAGGGTGTCTGCC+AGG | - | chr5.4:24324173-24324192 | None:intergenic | 55.0% |
| !! | CTCGCTTGTTGGTTTCACGC+CGG | - | chr5.4:24323907-24323926 | None:intergenic | 55.0% |
| !! | GAAAGGGTGTCTGCCAGGTA+AGG | - | chr5.4:24324168-24324187 | None:intergenic | 55.0% |
| !! | GGGTCTGGGCTTTTTCCCTT+AGG | - | chr5.4:24324217-24324236 | None:intergenic | 55.0% |
| CCCAAGGAGCTGAGTCTTGC+TGG | - | chr5.4:24325527-24325546 | None:intergenic | 60.0% | |
| TATCAGCCTCTCCGTGGCAC+CGG | + | chr5.4:24324818-24324837 | MS.gene80276:intron | 60.0% | |
| AAAAGCCCAGACCCAGGCCC+AGG | + | chr5.4:24324223-24324242 | MS.gene80276:CDS | 65.0% | |
| GAGATCGGCGGGGACGATGT+CGG | - | chr5.4:24323955-24323974 | None:intergenic | 65.0% | |
| GAGGTGGTACTCCGCCACCA+CGG | + | chr5.4:24325351-24325370 | MS.gene80276:CDS | 65.0% | |
| TTGAGCCTGGGCCTGGGTCT+GGG | - | chr5.4:24324231-24324250 | None:intergenic | 65.0% | |
| TTTGAGCCTGGGCCTGGGTC+TGG | - | chr5.4:24324232-24324251 | None:intergenic | 65.0% | |
| !! | CATATGCCGGTGCCACGGAG+AGG | - | chr5.4:24324827-24324846 | None:intergenic | 65.0% |
| !! | GAGGCTCTTGGGGTACTGGG+AGG | + | chr5.4:24324273-24324292 | MS.gene80276:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 24323852 | 24326586 | 24323852 | ID=MS.gene80276 |
| chr5.4 | mRNA | 24323852 | 24326586 | 24323852 | ID=MS.gene80276.t1;Parent=MS.gene80276 |
| chr5.4 | exon | 24323852 | 24324607 | 24323852 | ID=MS.gene80276.t1.exon1;Parent=MS.gene80276.t1 |
| chr5.4 | CDS | 24323852 | 24324607 | 24323852 | ID=cds.MS.gene80276.t1;Parent=MS.gene80276.t1 |
| chr5.4 | exon | 24325341 | 24325550 | 24325341 | ID=MS.gene80276.t1.exon2;Parent=MS.gene80276.t1 |
| chr5.4 | CDS | 24325341 | 24325550 | 24325341 | ID=cds.MS.gene80276.t1;Parent=MS.gene80276.t1 |
| chr5.4 | exon | 24325721 | 24325812 | 24325721 | ID=MS.gene80276.t1.exon3;Parent=MS.gene80276.t1 |
| chr5.4 | CDS | 24325721 | 24325812 | 24325721 | ID=cds.MS.gene80276.t1;Parent=MS.gene80276.t1 |
| chr5.4 | exon | 24325929 | 24326586 | 24325929 | ID=MS.gene80276.t1.exon4;Parent=MS.gene80276.t1 |
| chr5.4 | CDS | 24325929 | 24326586 | 24325929 | ID=cds.MS.gene80276.t1;Parent=MS.gene80276.t1 |
| Gene Sequence |
| Protein sequence |
