Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81739.t1 | XP_013467999.1 | 97.4 | 227 | 5 | 1 | 1 | 226 | 1 | 227 | 2.90E-121 | 444.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81739.t1 | Q9SR72 | 68.2 | 201 | 63 | 1 | 22 | 222 | 22 | 221 | 5.1e-82 | 305.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81739.t1 | A0A072VK82 | 97.4 | 227 | 5 | 1 | 1 | 226 | 1 | 227 | 2.1e-121 | 444.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056870 | MS.gene81739 | 0.929487 | 6.48E-93 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81739 | MS.gene07591 | PPI |
MS.gene81739 | MS.gene037520 | PPI |
MS.gene81739 | MS.gene004411 | PPI |
MS.gene81739 | MS.gene50789 | PPI |
MS.gene81739 | MS.gene037518 | PPI |
MS.gene81739 | MS.gene50787 | PPI |
MS.gene002728 | MS.gene81739 | PPI |
MS.gene81739 | MS.gene89774 | PPI |
MS.gene81739 | MS.gene70061 | PPI |
MS.gene81739 | MS.gene037516 | PPI |
MS.gene50790 | MS.gene81739 | PPI |
MS.gene89773 | MS.gene81739 | PPI |
MS.gene81739 | MS.gene037519 | PPI |
MS.gene81739 | MS.gene047464 | PPI |
MS.gene81739 | MS.gene005041 | PPI |
MS.gene70064 | MS.gene81739 | PPI |
MS.gene74887 | MS.gene81739 | PPI |
MS.gene81739 | MS.gene70062 | PPI |
MS.gene81739 | MS.gene96244 | PPI |
MS.gene81739 | MS.gene50786 | PPI |
MS.gene81739 | MS.gene89772 | PPI |
MS.gene89775 | MS.gene81739 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81739.t1 | MTR_1g060120 | 97.357 | 227 | 5 | 1 | 1 | 226 | 1 | 227 | 6.41e-164 | 451 |
MS.gene81739.t1 | MTR_1g112200 | 55.665 | 203 | 80 | 1 | 20 | 222 | 17 | 209 | 9.64e-81 | 240 |
MS.gene81739.t1 | MTR_1g085500 | 38.182 | 220 | 126 | 5 | 8 | 224 | 6 | 218 | 4.59e-49 | 160 |
MS.gene81739.t1 | MTR_6g005330 | 40.271 | 221 | 120 | 6 | 5 | 220 | 2 | 215 | 1.63e-45 | 151 |
MS.gene81739.t1 | MTR_2g030855 | 41.379 | 203 | 105 | 4 | 23 | 220 | 19 | 212 | 7.01e-45 | 149 |
MS.gene81739.t1 | MTR_5g036570 | 40.500 | 200 | 109 | 4 | 25 | 220 | 26 | 219 | 4.63e-44 | 147 |
MS.gene81739.t1 | MTR_2g031270 | 39.720 | 214 | 107 | 5 | 12 | 220 | 17 | 213 | 6.20e-44 | 147 |
MS.gene81739.t1 | MTR_6g005360 | 39.545 | 220 | 123 | 5 | 5 | 220 | 2 | 215 | 6.43e-44 | 147 |
MS.gene81739.t1 | MTR_1g023770 | 39.910 | 223 | 110 | 6 | 6 | 220 | 3 | 209 | 2.48e-43 | 145 |
MS.gene81739.t1 | MTR_6g005310 | 40.476 | 210 | 114 | 5 | 16 | 220 | 12 | 215 | 3.50e-43 | 145 |
MS.gene81739.t1 | MTR_1g085140 | 38.350 | 206 | 118 | 4 | 22 | 224 | 20 | 219 | 3.52e-43 | 145 |
MS.gene81739.t1 | MTR_6g005340 | 41.232 | 211 | 111 | 6 | 16 | 220 | 12 | 215 | 4.44e-43 | 145 |
MS.gene81739.t1 | MTR_4g017040 | 39.189 | 222 | 120 | 6 | 5 | 219 | 2 | 215 | 5.49e-43 | 144 |
MS.gene81739.t1 | MTR_7g111240 | 39.109 | 202 | 114 | 4 | 25 | 223 | 19 | 214 | 1.70e-42 | 143 |
MS.gene81739.t1 | MTR_7g111240 | 38.614 | 202 | 112 | 4 | 25 | 223 | 19 | 211 | 2.86e-42 | 142 |
MS.gene81739.t1 | MTR_1g079490 | 37.838 | 222 | 121 | 5 | 11 | 220 | 1 | 217 | 4.20e-42 | 142 |
MS.gene81739.t1 | MTR_4g017050 | 37.838 | 222 | 123 | 6 | 5 | 219 | 2 | 215 | 1.52e-41 | 141 |
MS.gene81739.t1 | MTR_2g019250 | 38.288 | 222 | 122 | 6 | 5 | 219 | 2 | 215 | 1.66e-41 | 140 |
MS.gene81739.t1 | MTR_5g046410 | 37.838 | 222 | 123 | 6 | 5 | 219 | 2 | 215 | 1.68e-41 | 140 |
MS.gene81739.t1 | MTR_5g046430 | 37.838 | 222 | 123 | 6 | 5 | 219 | 2 | 215 | 1.68e-41 | 140 |
MS.gene81739.t1 | MTR_4g017030 | 37.838 | 222 | 123 | 6 | 5 | 219 | 2 | 215 | 1.68e-41 | 140 |
MS.gene81739.t1 | MTR_2g041550 | 39.267 | 191 | 109 | 2 | 13 | 202 | 4 | 188 | 2.07e-38 | 132 |
MS.gene81739.t1 | MTR_8g007300 | 37.624 | 202 | 120 | 3 | 14 | 213 | 14 | 211 | 2.87e-38 | 132 |
MS.gene81739.t1 | MTR_8g020610 | 38.743 | 191 | 104 | 5 | 30 | 217 | 20 | 200 | 5.66e-38 | 131 |
MS.gene81739.t1 | MTR_6g005350 | 37.736 | 212 | 122 | 5 | 14 | 220 | 8 | 214 | 2.11e-37 | 130 |
MS.gene81739.t1 | MTR_8g020590 | 40.909 | 176 | 97 | 3 | 30 | 204 | 19 | 188 | 2.65e-37 | 129 |
MS.gene81739.t1 | MTR_2g041570 | 43.624 | 149 | 83 | 1 | 55 | 202 | 40 | 188 | 9.44e-37 | 128 |
MS.gene81739.t1 | MTR_2g041580 | 43.624 | 149 | 83 | 1 | 55 | 202 | 40 | 188 | 1.33e-36 | 128 |
MS.gene81739.t1 | MTR_2g030895 | 41.860 | 172 | 94 | 4 | 55 | 220 | 7 | 178 | 2.05e-36 | 126 |
MS.gene81739.t1 | MTR_2g030865 | 41.279 | 172 | 95 | 4 | 55 | 220 | 7 | 178 | 7.47e-35 | 122 |
MS.gene81739.t1 | MTR_3g096330 | 41.615 | 161 | 90 | 1 | 25 | 185 | 576 | 732 | 1.51e-34 | 130 |
MS.gene81739.t1 | MTR_2g045100 | 35.329 | 167 | 107 | 1 | 54 | 220 | 40 | 205 | 6.55e-34 | 121 |
MS.gene81739.t1 | MTR_3g019650 | 33.508 | 191 | 120 | 3 | 30 | 220 | 21 | 204 | 1.75e-33 | 120 |
MS.gene81739.t1 | MTR_3g019710 | 33.645 | 214 | 128 | 5 | 7 | 220 | 6 | 205 | 1.96e-33 | 119 |
MS.gene81739.t1 | MTR_8g020630 | 35.079 | 191 | 117 | 3 | 30 | 220 | 22 | 205 | 3.10e-33 | 119 |
MS.gene81739.t1 | MTR_2g086620 | 34.091 | 220 | 120 | 4 | 2 | 218 | 5 | 202 | 4.90e-33 | 119 |
MS.gene81739.t1 | MTR_0284s0010 | 36.170 | 188 | 113 | 3 | 30 | 217 | 22 | 202 | 6.49e-33 | 118 |
MS.gene81739.t1 | MTR_8g020750 | 36.866 | 217 | 122 | 7 | 4 | 217 | 1 | 205 | 6.58e-33 | 118 |
MS.gene81739.t1 | MTR_3g019680 | 32.710 | 214 | 132 | 5 | 7 | 220 | 3 | 204 | 8.72e-33 | 118 |
MS.gene81739.t1 | MTR_4g010340 | 32.663 | 199 | 126 | 3 | 23 | 221 | 12 | 202 | 2.85e-32 | 116 |
MS.gene81739.t1 | MTR_8g020670 | 33.175 | 211 | 130 | 4 | 10 | 220 | 6 | 205 | 6.21e-32 | 115 |
MS.gene81739.t1 | MTR_2g086630 | 33.182 | 220 | 122 | 4 | 2 | 218 | 5 | 202 | 6.26e-32 | 115 |
MS.gene81739.t1 | MTR_6g005380 | 37.850 | 214 | 116 | 7 | 5 | 210 | 2 | 206 | 7.24e-32 | 115 |
MS.gene81739.t1 | MTR_2g036120 | 32.984 | 191 | 121 | 3 | 30 | 220 | 22 | 205 | 1.34e-31 | 115 |
MS.gene81739.t1 | MTR_2g086640 | 33.641 | 217 | 119 | 4 | 5 | 218 | 7 | 201 | 1.65e-31 | 114 |
MS.gene81739.t1 | MTR_8g020650 | 34.555 | 191 | 118 | 3 | 30 | 220 | 22 | 205 | 2.17e-31 | 114 |
MS.gene81739.t1 | MTR_7g011340 | 34.574 | 188 | 116 | 3 | 30 | 217 | 22 | 202 | 4.12e-31 | 114 |
MS.gene81739.t1 | MTR_8g020763 | 34.503 | 171 | 110 | 2 | 54 | 223 | 20 | 189 | 5.16e-31 | 113 |
MS.gene81739.t1 | MTR_5g031460 | 31.383 | 188 | 122 | 3 | 30 | 217 | 22 | 202 | 1.27e-29 | 110 |
MS.gene81739.t1 | MTR_2g031300 | 40.881 | 159 | 69 | 4 | 55 | 208 | 7 | 145 | 3.18e-29 | 107 |
MS.gene81739.t1 | MTR_2g044040 | 29.302 | 215 | 138 | 4 | 6 | 220 | 5 | 205 | 2.11e-28 | 107 |
MS.gene81739.t1 | MTR_4g052770 | 32.093 | 215 | 122 | 4 | 7 | 218 | 10 | 203 | 2.23e-28 | 106 |
MS.gene81739.t1 | MTR_8g020760 | 31.019 | 216 | 135 | 5 | 7 | 220 | 4 | 207 | 2.26e-28 | 106 |
MS.gene81739.t1 | MTR_3g073170 | 33.158 | 190 | 118 | 4 | 32 | 221 | 27 | 207 | 3.87e-28 | 106 |
MS.gene81739.t1 | MTR_4g052780 | 31.579 | 209 | 121 | 3 | 13 | 218 | 14 | 203 | 7.19e-28 | 105 |
MS.gene81739.t1 | MTR_8g020770 | 31.776 | 214 | 135 | 4 | 10 | 221 | 3 | 207 | 2.09e-27 | 104 |
MS.gene81739.t1 | MTR_2g019780 | 33.854 | 192 | 114 | 4 | 31 | 220 | 28 | 208 | 1.80e-26 | 102 |
MS.gene81739.t1 | MTR_3g019810 | 28.638 | 213 | 130 | 7 | 9 | 220 | 114 | 305 | 2.18e-19 | 85.1 |
MS.gene81739.t1 | MTR_4g027415 | 37.500 | 128 | 73 | 3 | 30 | 157 | 22 | 142 | 1.56e-18 | 79.3 |
MS.gene81739.t1 | MTR_3g019610 | 34.211 | 114 | 62 | 3 | 6 | 119 | 5 | 105 | 8.66e-13 | 63.2 |
MS.gene81739.t1 | MTR_2g072560 | 36.000 | 100 | 58 | 2 | 30 | 129 | 22 | 115 | 8.53e-12 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81739.t1 | AT3G10080 | 68.159 | 201 | 63 | 1 | 22 | 222 | 22 | 221 | 5.50e-106 | 305 |
MS.gene81739.t1 | AT3G10080 | 68.159 | 201 | 63 | 1 | 22 | 222 | 93 | 292 | 5.47e-105 | 305 |
MS.gene81739.t1 | AT1G02335 | 39.706 | 204 | 114 | 3 | 24 | 224 | 22 | 219 | 4.22e-49 | 160 |
MS.gene81739.t1 | AT3G04200 | 42.925 | 212 | 109 | 5 | 9 | 213 | 9 | 215 | 7.23e-48 | 157 |
MS.gene81739.t1 | AT1G18980 | 42.466 | 219 | 111 | 6 | 5 | 220 | 12 | 218 | 7.91e-48 | 157 |
MS.gene81739.t1 | AT1G18970 | 40.183 | 219 | 116 | 6 | 5 | 220 | 12 | 218 | 2.28e-47 | 156 |
MS.gene81739.t1 | AT3G62020 | 39.720 | 214 | 117 | 6 | 16 | 224 | 13 | 219 | 2.81e-45 | 150 |
MS.gene81739.t1 | AT5G26700 | 37.245 | 196 | 115 | 3 | 30 | 224 | 25 | 213 | 3.51e-44 | 147 |
MS.gene81739.t1 | AT1G09560 | 38.725 | 204 | 116 | 4 | 24 | 224 | 22 | 219 | 1.11e-43 | 146 |
MS.gene81739.t1 | AT5G38940 | 40.796 | 201 | 110 | 4 | 25 | 220 | 25 | 221 | 1.30e-43 | 146 |
MS.gene81739.t1 | AT5G38940 | 40.796 | 201 | 110 | 4 | 25 | 220 | 49 | 245 | 2.28e-43 | 146 |
MS.gene81739.t1 | AT3G04170 | 38.393 | 224 | 125 | 5 | 8 | 225 | 7 | 223 | 7.40e-43 | 144 |
MS.gene81739.t1 | AT5G38960 | 41.463 | 205 | 110 | 4 | 22 | 220 | 22 | 222 | 9.98e-43 | 144 |
MS.gene81739.t1 | AT5G39190 | 38.889 | 216 | 120 | 5 | 11 | 220 | 10 | 219 | 1.08e-42 | 144 |
MS.gene81739.t1 | AT3G05950 | 39.614 | 207 | 114 | 4 | 26 | 226 | 26 | 227 | 1.15e-42 | 144 |
MS.gene81739.t1 | AT5G39160 | 38.889 | 216 | 120 | 5 | 11 | 220 | 10 | 219 | 1.43e-42 | 144 |
MS.gene81739.t1 | AT5G39130 | 38.426 | 216 | 121 | 5 | 11 | 220 | 10 | 219 | 1.51e-42 | 144 |
MS.gene81739.t1 | AT5G38910 | 39.631 | 217 | 119 | 6 | 10 | 220 | 9 | 219 | 1.85e-42 | 143 |
MS.gene81739.t1 | AT5G20630 | 39.583 | 192 | 109 | 2 | 30 | 220 | 22 | 207 | 2.03e-42 | 143 |
MS.gene81739.t1 | AT5G38930 | 39.706 | 204 | 114 | 4 | 22 | 220 | 22 | 221 | 7.75e-42 | 142 |
MS.gene81739.t1 | AT3G05930 | 37.745 | 204 | 117 | 4 | 25 | 224 | 22 | 219 | 7.81e-42 | 142 |
MS.gene81739.t1 | AT4G14630 | 38.496 | 226 | 126 | 6 | 3 | 220 | 2 | 222 | 1.04e-41 | 141 |
MS.gene81739.t1 | AT5G39160 | 39.352 | 216 | 115 | 6 | 11 | 220 | 10 | 215 | 3.99e-41 | 140 |
MS.gene81739.t1 | AT3G04150 | 40.367 | 218 | 118 | 5 | 8 | 218 | 7 | 219 | 5.52e-41 | 140 |
MS.gene81739.t1 | AT3G04150 | 38.938 | 226 | 123 | 5 | 8 | 218 | 7 | 232 | 1.66e-40 | 139 |
MS.gene81739.t1 | AT5G61750 | 41.622 | 185 | 96 | 5 | 22 | 203 | 15 | 190 | 1.92e-40 | 138 |
MS.gene81739.t1 | AT3G62020 | 41.714 | 175 | 96 | 4 | 55 | 224 | 17 | 190 | 4.13e-40 | 136 |
MS.gene81739.t1 | AT5G39110 | 38.424 | 203 | 115 | 5 | 24 | 220 | 22 | 220 | 6.05e-40 | 137 |
MS.gene81739.t1 | AT3G04180 | 37.879 | 198 | 112 | 4 | 26 | 217 | 26 | 218 | 1.12e-38 | 134 |
MS.gene81739.t1 | AT1G72610 | 39.062 | 192 | 110 | 2 | 30 | 220 | 19 | 204 | 1.73e-38 | 132 |
MS.gene81739.t1 | AT5G39120 | 36.364 | 220 | 122 | 5 | 7 | 220 | 12 | 219 | 2.54e-38 | 132 |
MS.gene81739.t1 | AT5G39150 | 37.619 | 210 | 119 | 5 | 19 | 220 | 14 | 219 | 5.63e-38 | 132 |
MS.gene81739.t1 | AT3G04190 | 38.660 | 194 | 108 | 4 | 26 | 213 | 26 | 214 | 6.17e-38 | 132 |
MS.gene81739.t1 | AT5G39180 | 37.619 | 210 | 119 | 5 | 19 | 220 | 14 | 219 | 7.69e-38 | 131 |
MS.gene81739.t1 | AT5G39190 | 35.185 | 216 | 106 | 5 | 11 | 220 | 10 | 197 | 5.13e-34 | 121 |
MS.gene81739.t1 | AT5G39160 | 35.814 | 215 | 106 | 6 | 11 | 220 | 10 | 197 | 5.18e-34 | 121 |
MS.gene81739.t1 | AT1G10460 | 34.146 | 205 | 125 | 5 | 23 | 221 | 16 | 216 | 5.22e-34 | 121 |
MS.gene81739.t1 | AT1G74820 | 35.185 | 216 | 128 | 6 | 7 | 219 | 18 | 224 | 2.64e-31 | 115 |
MS.gene81739.t1 | AT5G38910 | 33.023 | 215 | 99 | 6 | 10 | 220 | 9 | 182 | 2.05e-24 | 95.9 |
Find 47 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCTGCTGTGTTTGGTTC+AGG | 0.218464 | 1.3:+43547972 | MS.gene81739:CDS |
GCAAGAACAGATATTGAAAT+TGG | 0.257093 | 1.3:+43547714 | MS.gene81739:CDS |
CTAATCTACCTTTCTTGTTT+AGG | 0.257806 | 1.3:-43548071 | None:intergenic |
GGAAAATTTGTAGGGTTTGC+AGG | 0.300532 | 1.3:-43547663 | None:intergenic |
TCTTCTGCACTCCAGGATTC+TGG | 0.310068 | 1.3:-43547947 | None:intergenic |
GATGAAGTTGTTACTTTGTT+TGG | 0.346407 | 1.3:+43547912 | MS.gene81739:CDS |
AAGATACCTTCTGCTGTGTT+TGG | 0.348538 | 1.3:+43547966 | MS.gene81739:CDS |
CTTCTGCTGTGTTTGGTTCA+GGG | 0.370663 | 1.3:+43547973 | MS.gene81739:CDS |
GATTCAAGGAAAAGTGTATT+CGG | 0.373900 | 1.3:+43547788 | MS.gene81739:CDS |
ATGGAAGCTAATATTGGGTT+TGG | 0.377081 | 1.3:-43547513 | None:intergenic |
TCAGGAAACTTCTCAGAAAC+AGG | 0.378732 | 1.3:+43547627 | MS.gene81739:CDS |
CAGAAGTCTTGAACTGGATC+AGG | 0.380575 | 1.3:-43547486 | None:intergenic |
ATTCAAGGAAAAGTGTATTC+GGG | 0.402862 | 1.3:+43547789 | MS.gene81739:CDS |
TGTCTACACAAAAGAACCTT+TGG | 0.410688 | 1.3:+43547409 | MS.gene81739:CDS |
GGATTGAGTTCTAAACAGAT+TGG | 0.444234 | 1.3:+43548026 | MS.gene81739:CDS |
TGTATTAGTTCAGTGGCTCT+TGG | 0.445377 | 1.3:-43547762 | None:intergenic |
ACTTGAACAAGGTGAGGTTA+TGG | 0.446223 | 1.3:+43547848 | MS.gene81739:CDS |
TTGAGACCTGGAAAATTTGT+AGG | 0.448182 | 1.3:-43547672 | None:intergenic |
TTCTCCAACATGAAAACATC+AGG | 0.459471 | 1.3:+43547609 | MS.gene81739:CDS |
GAACTAATACATGTGATTCA+AGG | 0.461345 | 1.3:+43547774 | MS.gene81739:CDS |
GAAGGTATCTTCTGCACTCC+AGG | 0.463615 | 1.3:-43547954 | None:intergenic |
GGTATGCAGAAGTCTTGAAC+TGG | 0.465508 | 1.3:-43547492 | None:intergenic |
GTTGGAGAAGACAAAGTCAT+TGG | 0.513760 | 1.3:-43547595 | None:intergenic |
ATAAAATGCACAAGTCCTCT+AGG | 0.519148 | 1.3:-43547876 | None:intergenic |
AGAACAGATATTGAAATTGG+AGG | 0.530145 | 1.3:+43547717 | MS.gene81739:CDS |
TTTCCAGGTCTCAACACACT+AGG | 0.535831 | 1.3:+43547681 | MS.gene81739:CDS |
AATTAGATCCTAAACAAGAA+AGG | 0.545557 | 1.3:+43548063 | MS.gene81739:CDS |
AATCACATGTATTAGTTCAG+TGG | 0.548042 | 1.3:-43547769 | None:intergenic |
GTCTGAGGCTAATGTGGTGA+TGG | 0.550261 | 1.3:-43547463 | None:intergenic |
TGAGACCTGGAAAATTTGTA+GGG | 0.555602 | 1.3:-43547671 | None:intergenic |
ATCCCTAGTGTGTTGAGACC+TGG | 0.557920 | 1.3:-43547684 | None:intergenic |
TGTGGTGATGGCTAAGTTGA+GGG | 0.572606 | 1.3:-43547451 | None:intergenic |
TTCCAGGTCTCAACACACTA+GGG | 0.576341 | 1.3:+43547682 | MS.gene81739:CDS |
GCATGGGAGAATGGTGTGAA+AGG | 0.587406 | 1.3:-43547550 | None:intergenic |
AGAAGTCTTGAACTGGATCA+GGG | 0.590746 | 1.3:-43547485 | None:intergenic |
AAATAGAGAGCAAAAGCCAA+AGG | 0.599549 | 1.3:-43547425 | None:intergenic |
TTGAACTGGATCAGGGTCTG+AGG | 0.599642 | 1.3:-43547478 | None:intergenic |
CCTGAACCAAACACAGCAGA+AGG | 0.603153 | 1.3:-43547972 | None:intergenic |
ATCAGGGTCTGAGGCTAATG+TGG | 0.603475 | 1.3:-43547469 | None:intergenic |
TAGAATACTTGAACAAGGTG+AGG | 0.623266 | 1.3:+43547842 | MS.gene81739:CDS |
GTTTGGTTCAGGGATTGATG+AGG | 0.628382 | 1.3:+43547983 | MS.gene81739:CDS |
GAGGTTATGGTGTTTCCTAG+AGG | 0.631010 | 1.3:+43547861 | MS.gene81739:CDS |
TTTGCTAGAATACTTGAACA+AGG | 0.648470 | 1.3:+43547837 | MS.gene81739:CDS |
GTGGCTCTTGGATGAAAATG+TGG | 0.649171 | 1.3:-43547750 | None:intergenic |
ATGTGGTGATGGCTAAGTTG+AGG | 0.657994 | 1.3:-43547452 | None:intergenic |
GCTCTTGGATGAAAATGTGG+TGG | 0.675073 | 1.3:-43547747 | None:intergenic |
GTCATTGGTGATGACTTGTG+AGG | 0.742303 | 1.3:-43547580 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATGGAAGCTAATATT+GGG | - | chr1.3:43547521-43547540 | None:intergenic | 20.0% |
!!! | TTTTGTTGATTCTAACAATA+AGG | + | chr1.3:43547812-43547831 | MS.gene81739:CDS | 20.0% |
! | AATTAGATCCTAAACAAGAA+AGG | + | chr1.3:43548063-43548082 | MS.gene81739:CDS | 25.0% |
!! | AGGATCTAATTTTCTTTTCA+TGG | - | chr1.3:43548054-43548073 | None:intergenic | 25.0% |
!!! | GTTTTAATGGAAGCTAATAT+TGG | - | chr1.3:43547522-43547541 | None:intergenic | 25.0% |
AATCACATGTATTAGTTCAG+TGG | - | chr1.3:43547772-43547791 | None:intergenic | 30.0% | |
AGAACAGATATTGAAATTGG+AGG | + | chr1.3:43547717-43547736 | MS.gene81739:CDS | 30.0% | |
GAACTAATACATGTGATTCA+AGG | + | chr1.3:43547774-43547793 | MS.gene81739:CDS | 30.0% | |
GCAAGAACAGATATTGAAAT+TGG | + | chr1.3:43547714-43547733 | MS.gene81739:CDS | 30.0% | |
TTTGCTAGAATACTTGAACA+AGG | + | chr1.3:43547837-43547856 | MS.gene81739:CDS | 30.0% | |
! | ATTCAAGGAAAAGTGTATTC+GGG | + | chr1.3:43547789-43547808 | MS.gene81739:CDS | 30.0% |
! | GAGCTTTTACAAAAAGCTTT+TGG | + | chr1.3:43548005-43548024 | MS.gene81739:CDS | 30.0% |
! | GATTCAAGGAAAAGTGTATT+CGG | + | chr1.3:43547788-43547807 | MS.gene81739:CDS | 30.0% |
! | GTGCATTTTATGATGAATGT+TGG | + | chr1.3:43547888-43547907 | MS.gene81739:CDS | 30.0% |
!! | AAAGGTGTGATGTGTTTTAA+TGG | - | chr1.3:43547535-43547554 | None:intergenic | 30.0% |
!! | GATGAAGTTGTTACTTTGTT+TGG | + | chr1.3:43547912-43547931 | MS.gene81739:CDS | 30.0% |
AAATAGAGAGCAAAAGCCAA+AGG | - | chr1.3:43547428-43547447 | None:intergenic | 35.0% | |
ATAAAATGCACAAGTCCTCT+AGG | - | chr1.3:43547879-43547898 | None:intergenic | 35.0% | |
ATGGAAGCTAATATTGGGTT+TGG | - | chr1.3:43547516-43547535 | None:intergenic | 35.0% | |
TAGAATACTTGAACAAGGTG+AGG | + | chr1.3:43547842-43547861 | MS.gene81739:CDS | 35.0% | |
TGAGACCTGGAAAATTTGTA+GGG | - | chr1.3:43547674-43547693 | None:intergenic | 35.0% | |
TGTCTACACAAAAGAACCTT+TGG | + | chr1.3:43547409-43547428 | MS.gene81739:CDS | 35.0% | |
TTCTCCAACATGAAAACATC+AGG | + | chr1.3:43547609-43547628 | MS.gene81739:CDS | 35.0% | |
TTGAGACCTGGAAAATTTGT+AGG | - | chr1.3:43547675-43547694 | None:intergenic | 35.0% | |
! | GTTTCCTGATGTTTTCATGT+TGG | - | chr1.3:43547616-43547635 | None:intergenic | 35.0% |
!! | AGTTTTAATAGCCAGAATCC+TGG | + | chr1.3:43547936-43547955 | MS.gene81739:CDS | 35.0% |
!! | GGATTGAGTTCTAAACAGAT+TGG | + | chr1.3:43548026-43548045 | MS.gene81739:CDS | 35.0% |
AAGATACCTTCTGCTGTGTT+TGG | + | chr1.3:43547966-43547985 | MS.gene81739:CDS | 40.0% | |
ACTTGAACAAGGTGAGGTTA+TGG | + | chr1.3:43547848-43547867 | MS.gene81739:CDS | 40.0% | |
AGAAGTCTTGAACTGGATCA+GGG | - | chr1.3:43547488-43547507 | None:intergenic | 40.0% | |
GGAAAATTTGTAGGGTTTGC+AGG | - | chr1.3:43547666-43547685 | None:intergenic | 40.0% | |
GTTGGAGAAGACAAAGTCAT+TGG | - | chr1.3:43547598-43547617 | None:intergenic | 40.0% | |
TCAGGAAACTTCTCAGAAAC+AGG | + | chr1.3:43547627-43547646 | MS.gene81739:CDS | 40.0% | |
TGTATTAGTTCAGTGGCTCT+TGG | - | chr1.3:43547765-43547784 | None:intergenic | 40.0% | |
! | ACTTGTGAGGAGTTTTTGCA+TGG | - | chr1.3:43547570-43547589 | None:intergenic | 40.0% |
! | CTTGTGAGGAGTTTTTGCAT+GGG | - | chr1.3:43547569-43547588 | None:intergenic | 40.0% |
! | GCAAACCCTACAAATTTTCC+AGG | + | chr1.3:43547666-43547685 | MS.gene81739:CDS | 40.0% |
CAGAAGTCTTGAACTGGATC+AGG | - | chr1.3:43547489-43547508 | None:intergenic | 45.0% | |
GAGGTTATGGTGTTTCCTAG+AGG | + | chr1.3:43547861-43547880 | MS.gene81739:CDS | 45.0% | |
GCTCTTGGATGAAAATGTGG+TGG | - | chr1.3:43547750-43547769 | None:intergenic | 45.0% | |
GGTATGCAGAAGTCTTGAAC+TGG | - | chr1.3:43547495-43547514 | None:intergenic | 45.0% | |
GTGGCTCTTGGATGAAAATG+TGG | - | chr1.3:43547753-43547772 | None:intergenic | 45.0% | |
TTCCAGGTCTCAACACACTA+GGG | + | chr1.3:43547682-43547701 | MS.gene81739:CDS | 45.0% | |
TTTCCAGGTCTCAACACACT+AGG | + | chr1.3:43547681-43547700 | MS.gene81739:CDS | 45.0% | |
! | CTTCTGCTGTGTTTGGTTCA+GGG | + | chr1.3:43547973-43547992 | MS.gene81739:CDS | 45.0% |
! | GGAGTTTTTGCATGGGAGAA+TGG | - | chr1.3:43547562-43547581 | None:intergenic | 45.0% |
! | GTTTGGTTCAGGGATTGATG+AGG | + | chr1.3:43547983-43548002 | MS.gene81739:CDS | 45.0% |
!! | ATGTGGTGATGGCTAAGTTG+AGG | - | chr1.3:43547455-43547474 | None:intergenic | 45.0% |
!! | GTCATTGGTGATGACTTGTG+AGG | - | chr1.3:43547583-43547602 | None:intergenic | 45.0% |
!! | TGTGGTGATGGCTAAGTTGA+GGG | - | chr1.3:43547454-43547473 | None:intergenic | 45.0% |
ATCCCTAGTGTGTTGAGACC+TGG | - | chr1.3:43547687-43547706 | None:intergenic | 50.0% | |
CCTGAACCAAACACAGCAGA+AGG | - | chr1.3:43547975-43547994 | None:intergenic | 50.0% | |
GCATGGGAGAATGGTGTGAA+AGG | - | chr1.3:43547553-43547572 | None:intergenic | 50.0% | |
TCTTCTGCACTCCAGGATTC+TGG | - | chr1.3:43547950-43547969 | None:intergenic | 50.0% | |
TTGAACTGGATCAGGGTCTG+AGG | - | chr1.3:43547481-43547500 | None:intergenic | 50.0% | |
! | ATCAGGGTCTGAGGCTAATG+TGG | - | chr1.3:43547472-43547491 | None:intergenic | 50.0% |
! | CCTTCTGCTGTGTTTGGTTC+AGG | + | chr1.3:43547972-43547991 | MS.gene81739:CDS | 50.0% |
! | GTCTGAGGCTAATGTGGTGA+TGG | - | chr1.3:43547466-43547485 | None:intergenic | 50.0% |
!! | GAAGGTATCTTCTGCACTCC+AGG | - | chr1.3:43547957-43547976 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 43547408 | 43548088 | 43547408 | ID=MS.gene81739 |
chr1.3 | mRNA | 43547408 | 43548088 | 43547408 | ID=MS.gene81739.t1;Parent=MS.gene81739 |
chr1.3 | exon | 43547408 | 43548088 | 43547408 | ID=MS.gene81739.t1.exon1;Parent=MS.gene81739.t1 |
chr1.3 | CDS | 43547408 | 43548088 | 43547408 | ID=cds.MS.gene81739.t1;Parent=MS.gene81739.t1 |
Gene Sequence |
Protein sequence |