Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85474.t1 | XP_003598694.1 | 97.3 | 291 | 8 | 0 | 1 | 291 | 1 | 291 | 7.00E-160 | 573.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85474.t1 | Q0VD01 | 54.8 | 292 | 127 | 3 | 1 | 291 | 1 | 288 | 2.3e-87 | 323.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85474.t1 | G7IW56 | 97.3 | 291 | 8 | 0 | 1 | 291 | 1 | 291 | 5.1e-160 | 573.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85474.t1 | MTR_3g019370 | 97.251 | 291 | 8 | 0 | 1 | 291 | 1 | 291 | 0.0 | 586 |
| MS.gene85474.t1 | MTR_8g023820 | 33.219 | 292 | 142 | 7 | 50 | 291 | 66 | 354 | 3.38e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85474.t1 | AT1G63780 | 73.288 | 292 | 77 | 1 | 1 | 291 | 1 | 292 | 5.16e-164 | 457 |
| MS.gene85474.t1 | AT4G01560 | 34.437 | 302 | 162 | 9 | 14 | 291 | 54 | 343 | 1.46e-41 | 147 |
Find 54 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTCCTACTGCATATTT+TGG | 0.152617 | 3.4:+12700159 | MS.gene85474:CDS |
| TCCTTCAATTCTACAGATTT+AGG | 0.221306 | 3.4:-12702096 | None:intergenic |
| CATTCTAAAACATCTGTTTC+CGG | 0.297484 | 3.4:+12701856 | MS.gene85474:CDS |
| CGATTCATTCTTTCAGCATT+GGG | 0.364675 | 3.4:-12699035 | None:intergenic |
| TCATCATCAATGTGTGATCT+TGG | 0.367314 | 3.4:-12698781 | None:intergenic |
| AATAATATGCGGATAAGCTT+CGG | 0.371784 | 3.4:-12700311 | None:intergenic |
| TCTGTAGAATTGAAGGAAAT+TGG | 0.387754 | 3.4:+12702102 | MS.gene85474:CDS |
| ATAGTTTGTCATCTACCATA+TGG | 0.392644 | 3.4:+12700141 | MS.gene85474:CDS |
| TGACTATACAGATGTTATCT+TGG | 0.414988 | 3.4:+12700086 | MS.gene85474:CDS |
| CGAGATATAGTCAGACTTGT+TGG | 0.426562 | 3.4:-12701915 | None:intergenic |
| AGTCTGACTATATCTCGTTC+AGG | 0.430003 | 3.4:+12701921 | MS.gene85474:CDS |
| ATAATATGCGGATAAGCTTC+GGG | 0.448452 | 3.4:-12700310 | None:intergenic |
| TCCTAAATCTGTAGAATTGA+AGG | 0.458118 | 3.4:+12702095 | MS.gene85474:CDS |
| AACTGTTTGAGTGGAGCGCT+TGG | 0.459070 | 3.4:-12698859 | None:intergenic |
| GAGTGGAGCGCTTGGATCCC+TGG | 0.464338 | 3.4:-12698851 | None:intergenic |
| ACGATTCATTCTTTCAGCAT+TGG | 0.464351 | 3.4:-12699036 | None:intergenic |
| TGACAAACTATTAAACCATC+TGG | 0.466080 | 3.4:-12700129 | None:intergenic |
| GTTGTTCCTTGCAGGTTACA+AGG | 0.469398 | 3.4:+12700251 | MS.gene85474:intron |
| AAATATGCAGTAGGACCATA+TGG | 0.471997 | 3.4:-12700156 | None:intergenic |
| CATCATCAATGTGTGATCTT+GGG | 0.478264 | 3.4:-12698780 | None:intergenic |
| AAATTCTGCTGACCACATCC+AGG | 0.485156 | 3.4:+12698833 | MS.gene85474:CDS |
| TTCCGTGTAGTGTTCATGTA+AGG | 0.489124 | 3.4:-12702816 | None:intergenic |
| ACTTCGTCGCGAAATTGATC+TGG | 0.491295 | 3.4:+12696807 | MS.gene85474:CDS |
| CTGGAGGATGAAAACACATC+TGG | 0.494752 | 3.4:+12696826 | MS.gene85474:CDS |
| TCCACTCAAACAGTTTGTAA+AGG | 0.502089 | 3.4:+12698867 | MS.gene85474:CDS |
| ACCTTTACAAACTGTTTGAG+TGG | 0.503052 | 3.4:-12698868 | None:intergenic |
| ATCAATTTCGCGACGAAGTG+CGG | 0.507344 | 3.4:-12696803 | None:intergenic |
| AAAGTTAGAGAAGCTCTTCG+AGG | 0.508327 | 3.4:+12696639 | MS.gene85474:CDS |
| AAGAATGAATCGTGGTGGTC+AGG | 0.523960 | 3.4:+12699046 | MS.gene85474:CDS |
| AGCTTCGGGCATGGTTCCAA+CGG | 0.525645 | 3.4:-12700296 | None:intergenic |
| GCAGATAAAATTAGGAACAG+TGG | 0.540090 | 3.4:+12702758 | MS.gene85474:intron |
| GCATCATATATATGAAAAGC+AGG | 0.552365 | 3.4:+12702068 | MS.gene85474:CDS |
| ACATGAACACTACACGGAAG+AGG | 0.568800 | 3.4:+12702820 | MS.gene85474:CDS |
| GATACTCTCTTCGCAAACGT+TGG | 0.576621 | 3.4:-12696563 | None:intergenic |
| AGCGCTTGGATCCCTGGATG+TGG | 0.588133 | 3.4:-12698845 | None:intergenic |
| AGTAATCCAAAATATGCAGT+AGG | 0.590553 | 3.4:-12700165 | None:intergenic |
| TCCTCGTTTCTCAGCTCAGT+AGG | 0.592322 | 3.4:-12696778 | None:intergenic |
| GCTGTAACCAGTTAGGTGAA+AGG | 0.593902 | 3.4:+12701825 | MS.gene85474:intron |
| ATTAGAGACAGAAAAGCCGT+TGG | 0.603528 | 3.4:+12700280 | MS.gene85474:CDS |
| CATCTGTATAGTCATGTGAT+CGG | 0.609305 | 3.4:-12700077 | None:intergenic |
| TCGTCGCGAAATTGATCTGG+AGG | 0.623681 | 3.4:+12696810 | MS.gene85474:CDS |
| AATTCTGCTGACCACATCCA+GGG | 0.624410 | 3.4:+12698834 | MS.gene85474:CDS |
| CATATATATGAAAAGCAGGC+GGG | 0.633112 | 3.4:+12702072 | MS.gene85474:CDS |
| ATGCGGATAAGCTTCGGGCA+TGG | 0.635152 | 3.4:-12700305 | None:intergenic |
| GAACACCGAGGTGTGCCAGA+TGG | 0.638084 | 3.4:+12700114 | MS.gene85474:CDS |
| GACCTTACATGAACACTACA+CGG | 0.644746 | 3.4:+12702814 | MS.gene85474:CDS |
| TCATATATATGAAAAGCAGG+CGG | 0.651248 | 3.4:+12702071 | MS.gene85474:CDS |
| ACCTACTGAGCTGAGAAACG+AGG | 0.675140 | 3.4:+12696777 | MS.gene85474:CDS |
| TTAAACCATCTGGCACACCT+CGG | 0.692377 | 3.4:-12700119 | None:intergenic |
| TATAGACGCAACTCAAAACG+TGG | 0.698081 | 3.4:-12702126 | None:intergenic |
| AAATTATCAAGAATAATATG+CGG | 0.698309 | 3.4:-12700322 | None:intergenic |
| GCTGAAAGAATGAATCGTGG+TGG | 0.764437 | 3.4:+12699041 | MS.gene85474:CDS |
| AATGCTGAAAGAATGAATCG+TGG | 0.776928 | 3.4:+12699038 | MS.gene85474:CDS |
| ATCTTGGTTCATGAACACCG+AGG | 0.787086 | 3.4:+12700102 | MS.gene85474:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATATTGAATTATTAT+TGG | - | chr3.4:12702307-12702326 | None:intergenic | 10.0% |
| !! | ATTAAAAACATTAATAAATC+AGG | - | chr3.4:12699718-12699737 | None:intergenic | 10.0% |
| !! | TTAAAAACATTAATAAATCA+GGG | - | chr3.4:12699717-12699736 | None:intergenic | 10.0% |
| !! | TTTATAGTATTATTTAAGAA+AGG | + | chr3.4:12698351-12698370 | MS.gene85474:intron | 10.0% |
| !!! | AATAATAATTCAATATTTTC+TGG | + | chr3.4:12702306-12702325 | MS.gene85474:intron | 10.0% |
| !!! | AATATCATCATTATTTTTTT+AGG | - | chr3.4:12700017-12700036 | None:intergenic | 10.0% |
| !!! | GTTTATTTATTTTTTGAATT+GGG | + | chr3.4:12697240-12697259 | MS.gene85474:intron | 10.0% |
| !!! | TGTTTATTTATTTTTTGAAT+TGG | + | chr3.4:12697239-12697258 | MS.gene85474:intron | 10.0% |
| !! | AAATTATCAAGAATAATATG+CGG | - | chr3.4:12700325-12700344 | None:intergenic | 15.0% |
| !! | AATATGGAAAATTGATTATT+TGG | + | chr3.4:12699120-12699139 | MS.gene85474:intron | 15.0% |
| !! | ACAAGAAAATATTGAATTAT+TGG | - | chr3.4:12702366-12702385 | None:intergenic | 15.0% |
| !! | AGTATTATAATTGATATAGA+TGG | - | chr3.4:12701533-12701552 | None:intergenic | 15.0% |
| !! | ATAAATAATAATTGCATGAA+AGG | + | chr3.4:12698154-12698173 | MS.gene85474:intron | 15.0% |
| !! | ATTTCTATAACAAAAGATAA+AGG | + | chr3.4:12697368-12697387 | MS.gene85474:intron | 15.0% |
| !! | GGCATATAATTAAAAAAATA+TGG | - | chr3.4:12701188-12701207 | None:intergenic | 15.0% |
| !! | TAATATTAGATAATATGCTT+GGG | + | chr3.4:12699336-12699355 | MS.gene85474:intron | 15.0% |
| !! | TATGTGAAGTATAAAATATT+TGG | - | chr3.4:12698924-12698943 | None:intergenic | 15.0% |
| !! | TTAATATTAGATAATATGCT+TGG | + | chr3.4:12699335-12699354 | MS.gene85474:intron | 15.0% |
| !!! | AAATAATTTATTTGCTATTG+TGG | + | chr3.4:12699792-12699811 | MS.gene85474:intron | 15.0% |
| !!! | ATAGCAAATAAATTATTTTG+AGG | - | chr3.4:12699790-12699809 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTATTAAACTTT+AGG | - | chr3.4:12702728-12702747 | None:intergenic | 15.0% |
| !!! | GCTTTTATGTTAATTTATAA+TGG | - | chr3.4:12697014-12697033 | None:intergenic | 15.0% |
| !!! | TCATTGTTTTATTTATATTG+AGG | - | chr3.4:12701065-12701084 | None:intergenic | 15.0% |
| !!! | TCATTTTTTTTTTTTTGTGT+AGG | + | chr3.4:12698995-12699014 | MS.gene85474:intron | 15.0% |
| !!! | TGAGTAAATTTTGTAAATAA+TGG | + | chr3.4:12696884-12696903 | MS.gene85474:intron | 15.0% |
| !! | AAATGTAATGTGTAAAATGT+TGG | - | chr3.4:12699444-12699463 | None:intergenic | 20.0% |
| !! | AACATTAGAAATACTTCATT+TGG | + | chr3.4:12700612-12700631 | MS.gene85474:intron | 20.0% |
| !! | AATATTAGATAATATGCTTG+GGG | + | chr3.4:12699337-12699356 | MS.gene85474:intron | 20.0% |
| !! | ACAAAAACTATATAGAGATA+TGG | - | chr3.4:12699530-12699549 | None:intergenic | 20.0% |
| !! | ATCAAAATATAGAATGATTG+TGG | + | chr3.4:12700490-12700509 | MS.gene85474:intron | 20.0% |
| !! | ATGGTTAATATTAATAACAC+AGG | - | chr3.4:12701169-12701188 | None:intergenic | 20.0% |
| !! | CTAATCAACTCTTATTATTA+GGG | - | chr3.4:12700973-12700992 | None:intergenic | 20.0% |
| !! | CTTAATCTTATTATGTAAGT+CGG | - | chr3.4:12700857-12700876 | None:intergenic | 20.0% |
| !! | GCAATTATTATTTATTTCAG+TGG | - | chr3.4:12698149-12698168 | None:intergenic | 20.0% |
| !! | GGAATTATAGTTATTTACTT+CGG | + | chr3.4:12698582-12698601 | MS.gene85474:intron | 20.0% |
| !! | TAAGTAAAATTAAACGATGT+AGG | + | chr3.4:12700556-12700575 | MS.gene85474:intron | 20.0% |
| !! | TAATCAACTCTTATTATTAG+GGG | - | chr3.4:12700972-12700991 | None:intergenic | 20.0% |
| !! | TAATTGCTAAAAAAAACTCA+TGG | - | chr3.4:12697924-12697943 | None:intergenic | 20.0% |
| !! | TATATTGAGGTTATATTCAA+TGG | - | chr3.4:12701052-12701071 | None:intergenic | 20.0% |
| !! | TATTACTATTTAAACCACAT+TGG | + | chr3.4:12697942-12697961 | MS.gene85474:intron | 20.0% |
| !! | TATTAGTATATTAACTTCAG+AGG | - | chr3.4:12699304-12699323 | None:intergenic | 20.0% |
| !! | TATTTGCATAAGCTTAAAAT+AGG | - | chr3.4:12696943-12696962 | None:intergenic | 20.0% |
| !! | TCATAAAAACCAAATTTCAA+AGG | - | chr3.4:12698645-12698664 | None:intergenic | 20.0% |
| !! | TCTAATCAACTCTTATTATT+AGG | - | chr3.4:12700974-12700993 | None:intergenic | 20.0% |
| !! | TTCAAGAGAATATCTATTAT+TGG | - | chr3.4:12702403-12702422 | None:intergenic | 20.0% |
| !!! | AATATCTTGAATTTTATGAG+TGG | + | chr3.4:12698525-12698544 | MS.gene85474:intron | 20.0% |
| !!! | AATTTTGTTGTTTTTGTAGA+GGG | + | chr3.4:12696745-12696764 | MS.gene85474:intron | 20.0% |
| !!! | ATATATTCCATATGTTTTTG+TGG | + | chr3.4:12701335-12701354 | MS.gene85474:intron | 20.0% |
| !!! | ATTTGGATTTTCAATTCTTT+TGG | - | chr3.4:12699201-12699220 | None:intergenic | 20.0% |
| !!! | CAATGCAAAAATATTTTCAA+GGG | - | chr3.4:12699635-12699654 | None:intergenic | 20.0% |
| !!! | CTTTTTTGCATTATTGTTAA+TGG | + | chr3.4:12697889-12697908 | MS.gene85474:intron | 20.0% |
| !!! | TAATTTTGTTGTTTTTGTAG+AGG | + | chr3.4:12696744-12696763 | MS.gene85474:intron | 20.0% |
| !!! | TATATTCCATATGTTTTTGT+GGG | + | chr3.4:12701336-12701355 | MS.gene85474:intron | 20.0% |
| !!! | TCTTGATAATTTTGAAACTA+AGG | + | chr3.4:12700333-12700352 | MS.gene85474:CDS | 20.0% |
| !!! | TTAAACTTTAGGAATAAGAT+TGG | - | chr3.4:12702717-12702736 | None:intergenic | 20.0% |
| !!! | TTAATTTTCACACTGTTATT+TGG | + | chr3.4:12699733-12699752 | MS.gene85474:intron | 20.0% |
| !!! | TTATGTAGAAAGTACAATAA+TGG | - | chr3.4:12699492-12699511 | None:intergenic | 20.0% |
| !!! | TTGTAAATAATGGTTCTATT+TGG | + | chr3.4:12696894-12696913 | MS.gene85474:intron | 20.0% |
| !!! | TTTATTTTTTGAATTGGGAA+AGG | + | chr3.4:12697245-12697264 | MS.gene85474:intron | 20.0% |
| !!! | TTTGTACATACTAATTTTAC+TGG | + | chr3.4:12700386-12700405 | MS.gene85474:intron | 20.0% |
| ! | AAAGATGAAATGAAGTAAAG+TGG | + | chr3.4:12697477-12697496 | MS.gene85474:intron | 25.0% |
| ! | AAAGTCCAAAAATTATCAGA+AGG | - | chr3.4:12700447-12700466 | None:intergenic | 25.0% |
| ! | AAGCACTTATTAAATGTAGT+TGG | - | chr3.4:12701479-12701498 | None:intergenic | 25.0% |
| ! | AATGTAGTTGGGAAATAAAA+AGG | - | chr3.4:12701467-12701486 | None:intergenic | 25.0% |
| ! | AATTGATATAGATGGTGATT+AGG | - | chr3.4:12701525-12701544 | None:intergenic | 25.0% |
| ! | AGCACTTATTAAATGTAGTT+GGG | - | chr3.4:12701478-12701497 | None:intergenic | 25.0% |
| ! | GCACATATAGAAAATGATAA+CGG | - | chr3.4:12699096-12699115 | None:intergenic | 25.0% |
| ! | GCATGTTATATCATATATAC+TGG | + | chr3.4:12699654-12699673 | MS.gene85474:intron | 25.0% |
| ! | GCTTAAACCAAAAAAAATGT+TGG | - | chr3.4:12699901-12699920 | None:intergenic | 25.0% |
| ! | TATAACGCTGATGAATAAAT+TGG | + | chr3.4:12698492-12698511 | MS.gene85474:intron | 25.0% |
| ! | TCAGTACTTCAATCATAATT+TGG | - | chr3.4:12700774-12700793 | None:intergenic | 25.0% |
| ! | TGAAATAACCTGAAATGAAA+GGG | - | chr3.4:12700040-12700059 | None:intergenic | 25.0% |
| ! | TGTTGCATTAGCAAAAATAT+GGG | + | chr3.4:12699230-12699249 | MS.gene85474:intron | 25.0% |
| ! | TTATGTCAGTTAAGAATCAT+GGG | + | chr3.4:12698249-12698268 | MS.gene85474:intron | 25.0% |
| ! | TTCTATATGTGCTTGTAATA+TGG | + | chr3.4:12699104-12699123 | MS.gene85474:intron | 25.0% |
| ! | TTGTGATTATTGATCATGTT+TGG | + | chr3.4:12697158-12697177 | MS.gene85474:intron | 25.0% |
| ! | TTTATGTCAGTTAAGAATCA+TGG | + | chr3.4:12698248-12698267 | MS.gene85474:intron | 25.0% |
| !! | AAAAAGTTGATTATCCAAAC+AGG | - | chr3.4:12697395-12697414 | None:intergenic | 25.0% |
| !! | AACCATTTTGTATCAACTTT+CGG | + | chr3.4:12702461-12702480 | MS.gene85474:intron | 25.0% |
| !! | AACCTTTTGCAGATAAAATT+AGG | + | chr3.4:12702750-12702769 | MS.gene85474:intron | 25.0% |
| !! | AACTATTACTGATTAGTTAG+AGG | - | chr3.4:12699971-12699990 | None:intergenic | 25.0% |
| !! | ATTTAACTTTGTCTCTCATA+TGG | + | chr3.4:12698708-12698727 | MS.gene85474:intron | 25.0% |
| !! | CTGCTCATAAAATTTCTTTT+TGG | + | chr3.4:12701803-12701822 | MS.gene85474:intron | 25.0% |
| !! | CTTATGCAAATAAGCTTTTA+TGG | + | chr3.4:12696951-12696970 | MS.gene85474:intron | 25.0% |
| !! | GCAATGCAAAAATATTTTCA+AGG | - | chr3.4:12699636-12699655 | None:intergenic | 25.0% |
| !! | GTGTTAACTCTATAGATTTT+AGG | + | chr3.4:12700211-12700230 | MS.gene85474:intron | 25.0% |
| !! | TTCCTAATTTTATCTGCAAA+AGG | - | chr3.4:12702755-12702774 | None:intergenic | 25.0% |
| !! | TTTAACTTTGTCTCTCATAT+GGG | + | chr3.4:12698709-12698728 | MS.gene85474:intron | 25.0% |
| !!! | AAACAGATGTTTTAGAATGT+TGG | - | chr3.4:12701855-12701874 | None:intergenic | 25.0% |
| !!! | AGAGCACTTTTATCAATTTT+TGG | + | chr3.4:12698561-12698580 | MS.gene85474:intron | 25.0% |
| !!! | ATATTTTGGATTACTCAATG+TGG | + | chr3.4:12700173-12700192 | MS.gene85474:CDS | 25.0% |
| !!! | ATTTTGTTGTTTTTGTAGAG+GGG | + | chr3.4:12696746-12696765 | MS.gene85474:intron | 25.0% |
| !!! | CAGAAAGGTAATTATTTTTG+CGG | - | chr3.4:12701623-12701642 | None:intergenic | 25.0% |
| !!! | TCAACTTTTTTGTAGCTTAT+AGG | + | chr3.4:12697405-12697424 | MS.gene85474:intron | 25.0% |
| !!! | TGTTTTAAAATGTTAGTGTG+TGG | + | chr3.4:12697857-12697876 | MS.gene85474:intron | 25.0% |
| !!! | TGTTTTGAATACTGCAAAAA+AGG | - | chr3.4:12700523-12700542 | None:intergenic | 25.0% |
| AAACATAAAAGCTTATAGCG+TGG | + | chr3.4:12697070-12697089 | MS.gene85474:intron | 30.0% | |
| AACCAAAAAAAATGTTGGAC+AGG | - | chr3.4:12699896-12699915 | None:intergenic | 30.0% | |
| AATAATATGCGGATAAGCTT+CGG | - | chr3.4:12700314-12700333 | None:intergenic | 30.0% | |
| ACTATTTAAACCACATTGGT+TGG | + | chr3.4:12697946-12697965 | MS.gene85474:intron | 30.0% | |
| ACTGTAAACAGTTATGTGAA+AGG | + | chr3.4:12701699-12701718 | MS.gene85474:intron | 30.0% | |
| AGGTCAATTTGGAAAAGATT+AGG | + | chr3.4:12701261-12701280 | MS.gene85474:intron | 30.0% | |
| AGTAATCCAAAATATGCAGT+AGG | - | chr3.4:12700168-12700187 | None:intergenic | 30.0% | |
| ATGATATTCCCTTTCATTTC+AGG | + | chr3.4:12700029-12700048 | MS.gene85474:intron | 30.0% | |
| ATGCAACAGCAGTAAATATT+TGG | - | chr3.4:12699218-12699237 | None:intergenic | 30.0% | |
| CAACTTATGACATTGTTCAT+AGG | - | chr3.4:12697560-12697579 | None:intergenic | 30.0% | |
| CTATACAGAAAAAGCTTAGA+AGG | + | chr3.4:12696585-12696604 | MS.gene85474:CDS | 30.0% | |
| CTGAAATAACCTGAAATGAA+AGG | - | chr3.4:12700041-12700060 | None:intergenic | 30.0% | |
| CTGTTAACTTTCTCTTGTTA+CGG | + | chr3.4:12702003-12702022 | MS.gene85474:intron | 30.0% | |
| CTGTTGCATTAGCAAAAATA+TGG | + | chr3.4:12699229-12699248 | MS.gene85474:intron | 30.0% | |
| GAAATACTTCATTTGGAGAA+TGG | + | chr3.4:12700619-12700638 | MS.gene85474:intron | 30.0% | |
| GATAAGCACTTATCATGATA+AGG | - | chr3.4:12697100-12697119 | None:intergenic | 30.0% | |
| GCATCATATATATGAAAAGC+AGG | + | chr3.4:12702068-12702087 | MS.gene85474:CDS | 30.0% | |
| GCTAGTAGATAAGCTTAAAT+AGG | + | chr3.4:12697775-12697794 | MS.gene85474:intron | 30.0% | |
| GTTATATTGCTCCAATTACA+AGG | - | chr3.4:12698478-12698497 | None:intergenic | 30.0% | |
| TAAAATAGGCCTAATCCAAA+CGG | - | chr3.4:12696929-12696948 | None:intergenic | 30.0% | |
| TAAGCTCAGTAGAATGATTA+AGG | + | chr3.4:12701000-12701019 | MS.gene85474:intron | 30.0% | |
| TATAATTGATATCCGACCTT+AGG | + | chr3.4:12701241-12701260 | MS.gene85474:intron | 30.0% | |
| TATAGCATATACGCAGTTTA+TGG | + | chr3.4:12702516-12702535 | MS.gene85474:intron | 30.0% | |
| TCAATTAAGCCAATGCAAAT+AGG | + | chr3.4:12697632-12697651 | MS.gene85474:intron | 30.0% | |
| TCAGTTAAGGTTGAATTGAT+CGG | + | chr3.4:12697994-12698013 | MS.gene85474:intron | 30.0% | |
| TCATATATATGAAAAGCAGG+CGG | + | chr3.4:12702071-12702090 | MS.gene85474:CDS | 30.0% | |
| TCCAAAAATTATCAGAAGGT+CGG | - | chr3.4:12700443-12700462 | None:intergenic | 30.0% | |
| TCCTAAATCTGTAGAATTGA+AGG | + | chr3.4:12702095-12702114 | MS.gene85474:CDS | 30.0% | |
| TCCTTCAATTCTACAGATTT+AGG | - | chr3.4:12702099-12702118 | None:intergenic | 30.0% | |
| TCTGTAGAATTGAAGGAAAT+TGG | + | chr3.4:12702102-12702121 | MS.gene85474:CDS | 30.0% | |
| TCTTGGAGAACTTATGAAAA+CGG | + | chr3.4:12697534-12697553 | MS.gene85474:intron | 30.0% | |
| TGACAAACTATTAAACCATC+TGG | - | chr3.4:12700132-12700151 | None:intergenic | 30.0% | |
| TGACTATACAGATGTTATCT+TGG | + | chr3.4:12700086-12700105 | MS.gene85474:CDS | 30.0% | |
| TTAACTTTGTCTCTCATATG+GGG | + | chr3.4:12698710-12698729 | MS.gene85474:intron | 30.0% | |
| TTACCTTTAGTTAGCATCTT+AGG | + | chr3.4:12697323-12697342 | MS.gene85474:intron | 30.0% | |
| TTCAATCATAATTTGGACCA+GGG | - | chr3.4:12700767-12700786 | None:intergenic | 30.0% | |
| TTTCAATGTGAACATATGCT+TGG | - | chr3.4:12701381-12701400 | None:intergenic | 30.0% | |
| TTTCTTCCCACAAAAACATA+TGG | - | chr3.4:12701345-12701364 | None:intergenic | 30.0% | |
| ! | AAGCAGTGTTACTATTGTTA+TGG | - | chr3.4:12701767-12701786 | None:intergenic | 30.0% |
| ! | ACGCTATAAGCTTTTATGTT+TGG | - | chr3.4:12697071-12697090 | None:intergenic | 30.0% |
| ! | ACTCATAAAAGCCTTGTAAT+TGG | + | chr3.4:12698464-12698483 | MS.gene85474:intron | 30.0% |
| ! | AGTACAATAATGGAACATAG+TGG | - | chr3.4:12699482-12699501 | None:intergenic | 30.0% |
| ! | AGTGTTACTATTGTTATGGA+TGG | - | chr3.4:12701763-12701782 | None:intergenic | 30.0% |
| ! | ATAGTTTGTCATCTACCATA+TGG | + | chr3.4:12700141-12700160 | MS.gene85474:CDS | 30.0% |
| ! | ATCTTTTCCAAATTGACCTA+AGG | - | chr3.4:12701260-12701279 | None:intergenic | 30.0% |
| ! | CATACTAATTTTACTGGCAA+TGG | + | chr3.4:12700392-12700411 | MS.gene85474:intron | 30.0% |
| ! | CTATTTAAACCACATTGGTT+GGG | + | chr3.4:12697947-12697966 | MS.gene85474:intron | 30.0% |
| ! | GAACAAAATTGTTCTAGCTA+TGG | - | chr3.4:12698037-12698056 | None:intergenic | 30.0% |
| ! | TGGCATTCCAAATCTATTTT+AGG | - | chr3.4:12698609-12698628 | None:intergenic | 30.0% |
| ! | TGGCTTATTTAGAGTTTCTA+TGG | + | chr3.4:12699674-12699693 | MS.gene85474:intron | 30.0% |
| ! | TTTTGGACTTTCAGTATCAT+TGG | + | chr3.4:12700456-12700475 | MS.gene85474:intron | 30.0% |
| !! | AACCGAAAGTTGATACAAAA+TGG | - | chr3.4:12702466-12702485 | None:intergenic | 30.0% |
| !! | AATGATAACGGAGGATAAAA+TGG | - | chr3.4:12699084-12699103 | None:intergenic | 30.0% |
| !! | CATATAGAAAATGATAACGG+AGG | - | chr3.4:12699093-12699112 | None:intergenic | 30.0% |
| !! | CATTCTAAAACATCTGTTTC+CGG | + | chr3.4:12701856-12701875 | MS.gene85474:CDS | 30.0% |
| !! | CTTTGTTGTTAGCAATTGTA+TGG | + | chr3.4:12702183-12702202 | MS.gene85474:intron | 30.0% |
| !! | TCAGGTTAGTTTCATTTATC+TGG | + | chr3.4:12701939-12701958 | MS.gene85474:intron | 30.0% |
| !!! | AATGTTTTAGCCAAATGCTA+TGG | - | chr3.4:12700598-12700617 | None:intergenic | 30.0% |
| !!! | AATTTTTTTGAAATCGACGC+AGG | + | chr3.4:12702656-12702675 | MS.gene85474:intron | 30.0% |
| !!! | ACTTTTGAGCCTTTGAAATT+TGG | + | chr3.4:12698633-12698652 | MS.gene85474:intron | 30.0% |
| !!! | ATTATTTTGAGGCATACATG+AGG | - | chr3.4:12699779-12699798 | None:intergenic | 30.0% |
| !!! | CAGAATTTTAGGATCTTTCT+CGG | - | chr3.4:12698821-12698840 | None:intergenic | 30.0% |
| !!! | CTGCAAAAGGTTTCATTTTT+TGG | - | chr3.4:12702742-12702761 | None:intergenic | 30.0% |
| !!! | GCTTTTTTCATAAGCTTTCT+TGG | + | chr3.4:12697517-12697536 | MS.gene85474:intron | 30.0% |
| AAAATAGGCCTAATCCAAAC+GGG | - | chr3.4:12696928-12696947 | None:intergenic | 35.0% | |
| AAATATGCAGTAGGACCATA+TGG | - | chr3.4:12700159-12700178 | None:intergenic | 35.0% | |
| AACGGAGGATAAAATGGTAA+AGG | - | chr3.4:12699078-12699097 | None:intergenic | 35.0% | |
| AAGAAACAGATCAATCATGC+AGG | - | chr3.4:12700664-12700683 | None:intergenic | 35.0% | |
| AAGCTGTTTACAGTCCAAAT+TGG | - | chr3.4:12701565-12701584 | None:intergenic | 35.0% | |
| AATGACCTTCAGTTCAGTTA+AGG | + | chr3.4:12697981-12698000 | MS.gene85474:intron | 35.0% | |
| AATGCTGAAAGAATGAATCG+TGG | + | chr3.4:12699038-12699057 | MS.gene85474:CDS | 35.0% | |
| AATTATATGCCGTGTACTCA+TGG | + | chr3.4:12701197-12701216 | MS.gene85474:intron | 35.0% | |
| AATTTGGACTGTAAACAGCT+TGG | + | chr3.4:12701564-12701583 | MS.gene85474:intron | 35.0% | |
| ACAAGTCTAGCAATCAATCA+TGG | + | chr3.4:12700725-12700744 | MS.gene85474:intron | 35.0% | |
| ACACCTAAGATGCTAACTAA+AGG | - | chr3.4:12697329-12697348 | None:intergenic | 35.0% | |
| ACCTTTACAAACTGTTTGAG+TGG | - | chr3.4:12698871-12698890 | None:intergenic | 35.0% | |
| ACGATTCATTCTTTCAGCAT+TGG | - | chr3.4:12699039-12699058 | None:intergenic | 35.0% | |
| AGAAAGGTGACATTTCATTC+AGG | + | chr3.4:12698367-12698386 | MS.gene85474:intron | 35.0% | |
| AGCATCTAATGAGGAAAAGA+TGG | + | chr3.4:12700899-12700918 | MS.gene85474:intron | 35.0% | |
| ATAAATAGCCCGTTTGGATT+AGG | + | chr3.4:12696917-12696936 | MS.gene85474:intron | 35.0% | |
| ATAATATGCGGATAAGCTTC+GGG | - | chr3.4:12700313-12700332 | None:intergenic | 35.0% | |
| ATATTGTATCTGCTGCATAC+AGG | + | chr3.4:12702046-12702065 | MS.gene85474:intron | 35.0% | |
| ATGACTCTGTTTATTCGATC+TGG | + | chr3.4:12699853-12699872 | MS.gene85474:intron | 35.0% | |
| ATGTATTTACAGCTTCTCGA+AGG | + | chr3.4:12698312-12698331 | MS.gene85474:intron | 35.0% | |
| ATTATATGCCGTGTACTCAT+GGG | + | chr3.4:12701198-12701217 | MS.gene85474:intron | 35.0% | |
| ATTTGGATAAATAGCCCGTT+TGG | + | chr3.4:12696911-12696930 | MS.gene85474:intron | 35.0% | |
| CAAAAGATAAAGGTCCTGTT+TGG | + | chr3.4:12697378-12697397 | MS.gene85474:intron | 35.0% | |
| CAGTTAAGGTTGAATTGATC+GGG | + | chr3.4:12697995-12698014 | MS.gene85474:intron | 35.0% | |
| CATAACATCCTCTTTGAATC+AGG | + | chr3.4:12699278-12699297 | MS.gene85474:intron | 35.0% | |
| CATATATATGAAAAGCAGGC+GGG | + | chr3.4:12702072-12702091 | MS.gene85474:CDS | 35.0% | |
| CATCATCAATGTGTGATCTT+GGG | - | chr3.4:12698783-12698802 | None:intergenic | 35.0% | |
| CATCTGTATAGTCATGTGAT+CGG | - | chr3.4:12700080-12700099 | None:intergenic | 35.0% | |
| CCTCGAAGACAATTGTAAAA+TGG | + | chr3.4:12698114-12698133 | MS.gene85474:intron | 35.0% | |
| CGATTCATTCTTTCAGCATT+GGG | - | chr3.4:12699038-12699057 | None:intergenic | 35.0% | |
| CTTATTATTAGGGGCTTCTA+GGG | - | chr3.4:12700963-12700982 | None:intergenic | 35.0% | |
| CTTCAATCATAATTTGGACC+AGG | - | chr3.4:12700768-12700787 | None:intergenic | 35.0% | |
| CTTCGGACCTAAAATAGATT+TGG | + | chr3.4:12698599-12698618 | MS.gene85474:intron | 35.0% | |
| GCAGATAAAATTAGGAACAG+TGG | + | chr3.4:12702758-12702777 | MS.gene85474:intron | 35.0% | |
| TCAGAAGGTCGGATAAATAA+CGG | - | chr3.4:12700432-12700451 | None:intergenic | 35.0% | |
| TCATCATCAATGTGTGATCT+TGG | - | chr3.4:12698784-12698803 | None:intergenic | 35.0% | |
| TCCACTCAAACAGTTTGTAA+AGG | + | chr3.4:12698867-12698886 | MS.gene85474:CDS | 35.0% | |
| TCGAGAAGCTGTAAATACAT+TGG | - | chr3.4:12698312-12698331 | None:intergenic | 35.0% | |
| TCTTATTATTAGGGGCTTCT+AGG | - | chr3.4:12700964-12700983 | None:intergenic | 35.0% | |
| TGTTGTTAGCAATTGTATGG+AGG | + | chr3.4:12702186-12702205 | MS.gene85474:intron | 35.0% | |
| TTCAACCTTAACTGAACTGA+AGG | - | chr3.4:12697989-12698008 | None:intergenic | 35.0% | |
| TTGTGTCTCTTGTAGTTACA+TGG | - | chr3.4:12698085-12698104 | None:intergenic | 35.0% | |
| TTTCCAAATTGACCTAAGGT+CGG | - | chr3.4:12701256-12701275 | None:intergenic | 35.0% | |
| ! | AATAATGGAACATAGTGGTC+TGG | - | chr3.4:12699477-12699496 | None:intergenic | 35.0% |
| ! | ATAATGGAACATAGTGGTCT+GGG | - | chr3.4:12699476-12699495 | None:intergenic | 35.0% |
| ! | CCATTTTACAATTGTCTTCG+AGG | - | chr3.4:12698117-12698136 | None:intergenic | 35.0% |
| ! | GAGATATGGTTTTTGTGCTA+TGG | - | chr3.4:12699516-12699535 | None:intergenic | 35.0% |
| ! | GTGTCACTAGTATTACAGAA+AGG | - | chr3.4:12701638-12701657 | None:intergenic | 35.0% |
| ! | TATGGTCCTACTGCATATTT+TGG | + | chr3.4:12700159-12700178 | MS.gene85474:CDS | 35.0% |
| ! | TCCGACCTTCTGATAATTTT+TGG | + | chr3.4:12700439-12700458 | MS.gene85474:intron | 35.0% |
| !! | ATACGTTTTGTGTCTGGTTT+TGG | - | chr3.4:12701884-12701903 | None:intergenic | 35.0% |
| !! | ATACTGCTTTTGTGCCAATT+TGG | + | chr3.4:12701548-12701567 | MS.gene85474:intron | 35.0% |
| !! | ATTTGGAGAATGGTTTTACG+AGG | + | chr3.4:12700629-12700648 | MS.gene85474:intron | 35.0% |
| !! | GCTGTTTTCATAGACTATCT+TGG | + | chr3.4:12697693-12697712 | MS.gene85474:intron | 35.0% |
| !!! | TGCCTGTCCAACATTTTTTT+TGG | + | chr3.4:12699891-12699910 | MS.gene85474:intron | 35.0% |
| !!! | TTTTGAGTTGCGTCTATATC+AGG | + | chr3.4:12702131-12702150 | MS.gene85474:CDS | 35.0% |
| AAAGTTAGAGAAGCTCTTCG+AGG | + | chr3.4:12696639-12696658 | MS.gene85474:CDS | 40.0% | |
| AACCATACAATGGGCATGTT+TGG | - | chr3.4:12697806-12697825 | None:intergenic | 40.0% | |
| AAGATTAGGTGCTCTATCAC+TGG | + | chr3.4:12701275-12701294 | MS.gene85474:intron | 40.0% | |
| ACTAAAGGTAAGAGACCTCA+AGG | - | chr3.4:12697314-12697333 | None:intergenic | 40.0% | |
| AGACCAACTCAAGAACAGAT+CGG | - | chr3.4:12702335-12702354 | None:intergenic | 40.0% | |
| AGTCTGACTATATCTCGTTC+AGG | + | chr3.4:12701921-12701940 | MS.gene85474:CDS | 40.0% | |
| ATAACCCTTGTGAGACTGTT+TGG | - | chr3.4:12697755-12697774 | None:intergenic | 40.0% | |
| ATCCAAACATGCCCATTGTA+TGG | + | chr3.4:12697801-12697820 | MS.gene85474:intron | 40.0% | |
| ATGCAGAGTAGCATCTAATG+AGG | + | chr3.4:12700890-12700909 | MS.gene85474:intron | 40.0% | |
| ATTAGAGACAGAAAAGCCGT+TGG | + | chr3.4:12700280-12700299 | MS.gene85474:CDS | 40.0% | |
| CAATGTGAACATATGCTTGG+TGG | - | chr3.4:12701378-12701397 | None:intergenic | 40.0% | |
| CACTTAACTTATGCTCTTGC+AGG | - | chr3.4:12700809-12700828 | None:intergenic | 40.0% | |
| CACTTTGAGCCTATTTGCAT+TGG | - | chr3.4:12697644-12697663 | None:intergenic | 40.0% | |
| CAGAAGGTCGGATAAATAAC+GGG | - | chr3.4:12700431-12700450 | None:intergenic | 40.0% | |
| CAGTGAGTTCAGTGTAACTA+CGG | - | chr3.4:12698962-12698981 | None:intergenic | 40.0% | |
| CGAGATATAGTCAGACTTGT+TGG | - | chr3.4:12701918-12701937 | None:intergenic | 40.0% | |
| CTCTATCACTGGAATACTTG+TGG | + | chr3.4:12701286-12701305 | MS.gene85474:intron | 40.0% | |
| CTTCTTTGACAAGAAGCAAG+AGG | - | chr3.4:12699389-12699408 | None:intergenic | 40.0% | |
| CTTTGAATTGTGCTGCAACT+GGG | + | chr3.4:12702257-12702276 | MS.gene85474:intron | 40.0% | |
| GACCTTACATGAACACTACA+CGG | + | chr3.4:12702814-12702833 | MS.gene85474:CDS | 40.0% | |
| GCTAATATGTTGTTCCTTGC+AGG | + | chr3.4:12700243-12700262 | MS.gene85474:intron | 40.0% | |
| TAACCCTTGTGAGACTGTTT+GGG | - | chr3.4:12697754-12697773 | None:intergenic | 40.0% | |
| TACAATGGGCATGTTTGGAT+TGG | - | chr3.4:12697801-12697820 | None:intergenic | 40.0% | |
| TATAGACGCAACTCAAAACG+TGG | - | chr3.4:12702129-12702148 | None:intergenic | 40.0% | |
| TATCCGACCTTAGGTCAATT+TGG | + | chr3.4:12701250-12701269 | MS.gene85474:intron | 40.0% | |
| TCAAAGGCTCAAAAGTCTTC+TGG | - | chr3.4:12698629-12698648 | None:intergenic | 40.0% | |
| TCAAATACCCCATGAGTACA+CGG | - | chr3.4:12701209-12701228 | None:intergenic | 40.0% | |
| TGTTTCTTGCGTCTCTAACT+TGG | + | chr3.4:12702429-12702448 | MS.gene85474:intron | 40.0% | |
| TTATATGCCGTGTACTCATG+GGG | + | chr3.4:12701199-12701218 | MS.gene85474:intron | 40.0% | |
| TTCCGTGTAGTGTTCATGTA+AGG | - | chr3.4:12702819-12702838 | None:intergenic | 40.0% | |
| TTTCCGATCTGTTCTTGAGT+TGG | + | chr3.4:12702329-12702348 | MS.gene85474:intron | 40.0% | |
| ! | ACTGTAAACAGCTTGGTGAA+AGG | + | chr3.4:12701571-12701590 | MS.gene85474:intron | 40.0% |
| ! | CTGTAAACAGCTTGGTGAAA+GGG | + | chr3.4:12701572-12701591 | MS.gene85474:intron | 40.0% |
| ! | GATGTGGTCAGCAGAATTTT+AGG | - | chr3.4:12698832-12698851 | None:intergenic | 40.0% |
| ! | GTGACAATACGTTTTGTGTC+TGG | - | chr3.4:12701890-12701909 | None:intergenic | 40.0% |
| ! | TCAATCATGGTTCTGTTGAC+AGG | + | chr3.4:12700738-12700757 | MS.gene85474:intron | 40.0% |
| !! | AAAGCATTTTTCCACGAGGT+CGG | - | chr3.4:12701106-12701125 | None:intergenic | 40.0% |
| !! | CAACAAAGCATTTTTCCACG+AGG | - | chr3.4:12701110-12701129 | None:intergenic | 40.0% |
| !! | TCGGATAAATAACGGGTGAA+AGG | - | chr3.4:12700424-12700443 | None:intergenic | 40.0% |
| !!! | CTTTTTGGCTGTAACCAGTT+AGG | + | chr3.4:12701818-12701837 | MS.gene85474:intron | 40.0% |
| !!! | GTGACGCTGTTTTGAAGAAT+TGG | - | chr3.4:12697589-12697608 | None:intergenic | 40.0% |
| AAATTCTGCTGACCACATCC+AGG | + | chr3.4:12698833-12698852 | MS.gene85474:CDS | 45.0% | |
| AAGAATGAATCGTGGTGGTC+AGG | + | chr3.4:12699046-12699065 | MS.gene85474:CDS | 45.0% | |
| AATTCTGCTGACCACATCCA+GGG | + | chr3.4:12698834-12698853 | MS.gene85474:CDS | 45.0% | |
| ACATGAACACTACACGGAAG+AGG | + | chr3.4:12702820-12702839 | MS.gene85474:CDS | 45.0% | |
| ACCGTGATGTCCATAGCATT+TGG | + | chr3.4:12700585-12700604 | MS.gene85474:intron | 45.0% | |
| ACGTGTACAGTAGTTTAGCC+AGG | + | chr3.4:12700929-12700948 | MS.gene85474:intron | 45.0% | |
| ACTGGAATACTTGTGGACGT+AGG | + | chr3.4:12701293-12701312 | MS.gene85474:intron | 45.0% | |
| ACTTCGTCGCGAAATTGATC+TGG | + | chr3.4:12696807-12696826 | MS.gene85474:CDS | 45.0% | |
| AGATCAATCATGCAGGAGAC+TGG | - | chr3.4:12700657-12700676 | None:intergenic | 45.0% | |
| ATCAATTTCGCGACGAAGTG+CGG | - | chr3.4:12696806-12696825 | None:intergenic | 45.0% | |
| ATCTTGGTTCATGAACACCG+AGG | + | chr3.4:12700102-12700121 | MS.gene85474:CDS | 45.0% | |
| CTGGAGGATGAAAACACATC+TGG | + | chr3.4:12696826-12696845 | MS.gene85474:CDS | 45.0% | |
| GACAAGAAGCAAGAGGAGTA+AGG | - | chr3.4:12699382-12699401 | None:intergenic | 45.0% | |
| GAGCTGTAGTAGTTAGAGCA+TGG | + | chr3.4:12698059-12698078 | MS.gene85474:intron | 45.0% | |
| GATACTCTCTTCGCAAACGT+TGG | - | chr3.4:12696566-12696585 | None:intergenic | 45.0% | |
| GATTCATATAACCGACCTCG+TGG | + | chr3.4:12701092-12701111 | MS.gene85474:intron | 45.0% | |
| GCCAAATGCTATGGACATCA+CGG | - | chr3.4:12700589-12700608 | None:intergenic | 45.0% | |
| GCTGAAAGAATGAATCGTGG+TGG | + | chr3.4:12699041-12699060 | MS.gene85474:CDS | 45.0% | |
| GCTGTAACCAGTTAGGTGAA+AGG | + | chr3.4:12701825-12701844 | MS.gene85474:intron | 45.0% | |
| GTTGTTCCTTGCAGGTTACA+AGG | + | chr3.4:12700251-12700270 | MS.gene85474:intron | 45.0% | |
| TACTGAAACTCAGCACCTTG+AGG | + | chr3.4:12697296-12697315 | MS.gene85474:intron | 45.0% | |
| TCCCTCAGCAACCATACAAT+GGG | - | chr3.4:12697815-12697834 | None:intergenic | 45.0% | |
| TCTCCCAAACAGTCTCACAA+GGG | + | chr3.4:12697748-12697767 | MS.gene85474:intron | 45.0% | |
| TTAAACCATCTGGCACACCT+CGG | - | chr3.4:12700122-12700141 | None:intergenic | 45.0% | |
| TTATGCTCTTGCAGGCGATT+AGG | - | chr3.4:12700801-12700820 | None:intergenic | 45.0% | |
| TTCAGAGGCCTGATTCAAAG+AGG | - | chr3.4:12699289-12699308 | None:intergenic | 45.0% | |
| TTCATGCCTTGTAACCTGCA+AGG | - | chr3.4:12700260-12700279 | None:intergenic | 45.0% | |
| TTCCCTCAGCAACCATACAA+TGG | - | chr3.4:12697816-12697835 | None:intergenic | 45.0% | |
| TTCTCCCAAACAGTCTCACA+AGG | + | chr3.4:12697747-12697766 | MS.gene85474:intron | 45.0% | |
| TTGAGGCATACATGAGGAAC+AGG | - | chr3.4:12699773-12699792 | None:intergenic | 45.0% | |
| TTGTCTCTCATATGGGGAGT+GGG | + | chr3.4:12698716-12698735 | MS.gene85474:intron | 45.0% | |
| TTGTGTTCATCCACGTGTAC+TGG | + | chr3.4:12701143-12701162 | MS.gene85474:intron | 45.0% | |
| TTTGTCTCTCATATGGGGAG+TGG | + | chr3.4:12698715-12698734 | MS.gene85474:intron | 45.0% | |
| ! | GCTTTGAATTGTGCTGCAAC+TGG | + | chr3.4:12702256-12702275 | MS.gene85474:intron | 45.0% |
| !!! | TTTGTGTCTGGTTTTGGCAC+CGG | - | chr3.4:12701878-12701897 | None:intergenic | 45.0% |
| !! | TTAATGAATTATTATATTTA+AGG | - | chr3.4:12699939-12699958 | None:intergenic | 5.0% |
| ACCTACTGAGCTGAGAAACG+AGG | + | chr3.4:12696777-12696796 | MS.gene85474:CDS | 50.0% | |
| ATAACACAGGCCAGTACACG+TGG | - | chr3.4:12701156-12701175 | None:intergenic | 50.0% | |
| ATATGGGGAGTGGGGTTTGA+TGG | + | chr3.4:12698725-12698744 | MS.gene85474:intron | 50.0% | |
| ATGAATCGTGGTGGTCAGGT+TGG | + | chr3.4:12699050-12699069 | MS.gene85474:intron | 50.0% | |
| GCCCATTGTATGGTTGCTGA+GGG | + | chr3.4:12697811-12697830 | MS.gene85474:intron | 50.0% | |
| GTTCTGTTGACAGGTTACCC+TGG | + | chr3.4:12700747-12700766 | MS.gene85474:intron | 50.0% | |
| GTTGCTGAGGGAATGAGCAT+GGG | + | chr3.4:12697823-12697842 | MS.gene85474:intron | 50.0% | |
| TATGGGGAGTGGGGTTTGAT+GGG | + | chr3.4:12698726-12698745 | MS.gene85474:intron | 50.0% | |
| TCCTCGTTTCTCAGCTCAGT+AGG | - | chr3.4:12696781-12696800 | None:intergenic | 50.0% | |
| TCGTCGCGAAATTGATCTGG+AGG | + | chr3.4:12696810-12696829 | MS.gene85474:CDS | 50.0% | |
| TGCCCATTGTATGGTTGCTG+AGG | + | chr3.4:12697810-12697829 | MS.gene85474:intron | 50.0% | |
| TGGCAGTCCTTTCACCTAAC+TGG | - | chr3.4:12701835-12701854 | None:intergenic | 50.0% | |
| TGTCTCTCATATGGGGAGTG+GGG | + | chr3.4:12698717-12698736 | MS.gene85474:intron | 50.0% | |
| ! | AACTGTTTGAGTGGAGCGCT+TGG | - | chr3.4:12698862-12698881 | None:intergenic | 50.0% |
| AGCTTCGGGCATGGTTCCAA+CGG | - | chr3.4:12700299-12700318 | None:intergenic | 55.0% | |
| ATGCGGATAAGCTTCGGGCA+TGG | - | chr3.4:12700308-12700327 | None:intergenic | 55.0% | |
| GCTCTTGCAGGCGATTAGGT+GGG | - | chr3.4:12700797-12700816 | None:intergenic | 55.0% | |
| GGTTGCTGAGGGAATGAGCA+TGG | + | chr3.4:12697822-12697841 | MS.gene85474:intron | 55.0% | |
| TGCTCTTGCAGGCGATTAGG+TGG | - | chr3.4:12700798-12700817 | None:intergenic | 55.0% | |
| !! | GCTTCTAGGGTCTTCTCACC+TGG | - | chr3.4:12700950-12700969 | None:intergenic | 55.0% |
| AGCGCTTGGATCCCTGGATG+TGG | - | chr3.4:12698848-12698867 | None:intergenic | 60.0% | |
| CCACTCGAGCCCAACCAATG+TGG | - | chr3.4:12697959-12697978 | None:intergenic | 60.0% | |
| GAACACCGAGGTGTGCCAGA+TGG | + | chr3.4:12700114-12700133 | MS.gene85474:CDS | 60.0% | |
| ! | CCACATTGGTTGGGCTCGAG+TGG | + | chr3.4:12697956-12697975 | MS.gene85474:intron | 60.0% |
| ! | GAGTGGAGCGCTTGGATCCC+TGG | - | chr3.4:12698854-12698873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12696549 | 12702854 | 12696549 | ID=MS.gene85474 |
| chr3.4 | mRNA | 12696549 | 12702854 | 12696549 | ID=MS.gene85474.t1;Parent=MS.gene85474 |
| chr3.4 | exon | 12696549 | 12696660 | 12696549 | ID=MS.gene85474.t1.exon1;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12696549 | 12696660 | 12696549 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12696764 | 12696847 | 12696764 | ID=MS.gene85474.t1.exon2;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12696764 | 12696847 | 12696764 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12698779 | 12698888 | 12698779 | ID=MS.gene85474.t1.exon3;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12698779 | 12698888 | 12698779 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12699017 | 12699067 | 12699017 | ID=MS.gene85474.t1.exon4;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12699017 | 12699067 | 12699017 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12700051 | 12700194 | 12700051 | ID=MS.gene85474.t1.exon5;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12700051 | 12700194 | 12700051 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12700265 | 12700354 | 12700265 | ID=MS.gene85474.t1.exon6;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12700265 | 12700354 | 12700265 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12701836 | 12701942 | 12701836 | ID=MS.gene85474.t1.exon7;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12701836 | 12701942 | 12701836 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12702068 | 12702152 | 12702068 | ID=MS.gene85474.t1.exon8;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12702068 | 12702152 | 12702068 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| chr3.4 | exon | 12702762 | 12702854 | 12702762 | ID=MS.gene85474.t1.exon9;Parent=MS.gene85474.t1 |
| chr3.4 | CDS | 12702762 | 12702854 | 12702762 | ID=cds.MS.gene85474.t1;Parent=MS.gene85474.t1 |
| Gene Sequence |
| Protein sequence |
