AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02090.t1 MTR_2g029940 97.817 504 11 0 1 504 1 504 0.0 1012
MS.gene02090.t1 MTR_8g106790 26.697 221 138 4 145 360 59 260 1.01e-15 78.6
MS.gene02090.t1 MTR_1g054300 33.607 122 80 1 200 320 360 481 2.18e-15 79.0
MS.gene02090.t1 MTR_4g105700 33.514 185 94 7 152 326 63 228 1.58e-14 77.0
MS.gene02090.t1 MTR_2g436510 25.114 219 143 3 144 360 207 406 5.82e-13 71.2
MS.gene02090.t1 MTR_5g016370 26.724 232 161 6 145 372 243 469 9.22e-13 70.9
MS.gene02090.t1 MTR_7g076230 28.750 160 95 2 142 300 404 545 1.08e-12 71.2
MS.gene02090.t1 MTR_4g095058 21.698 424 275 12 55 443 133 534 2.27e-12 69.7
MS.gene02090.t1 MTR_4g095058 21.914 324 209 7 148 443 229 536 2.79e-12 69.3
MS.gene02090.t1 MTR_1g097140 30.588 170 113 4 207 372 77 245 1.12e-11 67.0
MS.gene02090.t1 MTR_4g123597 26.404 178 117 4 197 360 516 693 1.17e-11 67.8
MS.gene02090.t1 MTR_4g123597 27.848 158 94 4 170 326 85 223 1.18e-11 67.8
MS.gene02090.t1 MTR_4g119620 22.845 232 151 6 148 371 77 288 1.24e-11 66.2
MS.gene02090.t1 MTR_4g119620 24.891 229 144 7 143 360 21 232 5.99e-11 64.3
MS.gene02090.t1 MTR_1g072140 21.795 234 157 5 145 371 65 279 2.30e-11 65.5
MS.gene02090.t1 MTR_4g104380 22.944 231 163 5 225 442 245 473 4.35e-11 65.5
MS.gene02090.t1 MTR_5g016350 25.974 231 166 5 145 372 165 393 5.13e-11 65.5
MS.gene02090.t1 MTR_5g016350 25.974 231 166 5 145 372 229 457 9.21e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02090.t1 AT4G05410 54.438 507 195 9 10 504 22 504 0.0 525
MS.gene02090.t1 AT4G21130 52.860 507 200 6 1 504 9 479 1.03e-174 500
MS.gene02090.t1 AT3G18130 24.671 304 184 9 145 442 59 323 3.58e-16 80.1
MS.gene02090.t1 AT1G48630 24.342 304 185 9 145 442 59 323 3.16e-15 77.4
MS.gene02090.t1 AT1G48630 26.778 239 147 8 144 371 10 231 8.65e-13 69.7
MS.gene02090.t1 AT5G52820 32.520 123 82 1 200 321 350 472 3.20e-15 78.6
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 508 717 7.42e-15 78.2
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 508 717 7.42e-15 78.2
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 508 717 7.42e-15 78.2
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 508 717 7.42e-15 78.2
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 508 717 7.42e-15 78.2
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 506 715 7.68e-15 77.8
MS.gene02090.t1 AT2G32700 24.286 210 116 4 208 374 527 736 8.00e-15 77.8
MS.gene02090.t1 AT5G16750 32.967 182 96 6 152 326 63 225 1.90e-14 76.6
MS.gene02090.t1 AT3G21540 32.911 158 86 4 170 326 85 223 2.53e-14 76.3
MS.gene02090.t1 AT1G18080 25.225 222 141 4 145 360 59 261 3.02e-13 71.2
MS.gene02090.t1 AT5G67320 26.201 229 160 5 148 372 264 487 3.11e-13 72.8
MS.gene02090.t1 AT1G61210 29.487 156 89 2 166 320 117 252 1.45e-12 70.9
MS.gene02090.t1 AT1G61210 29.487 156 89 2 166 320 117 252 1.54e-12 70.9
MS.gene02090.t1 AT1G61210 29.487 156 89 2 166 320 117 252 1.59e-12 70.9
MS.gene02090.t1 AT2G05720 30.625 160 105 4 148 301 105 264 3.01e-12 67.8
MS.gene02090.t1 AT4G15900 25.114 219 143 3 144 360 213 412 3.35e-12 68.9
MS.gene02090.t1 AT1G11160 26.238 202 126 4 142 320 9 210 5.26e-12 68.9
MS.gene02090.t1 AT1G11160 26.500 200 124 4 144 320 53 252 1.18e-11 67.8
MS.gene02090.t1 AT1G11160 26.500 200 124 4 144 320 53 252 1.19e-11 67.8
MS.gene02090.t1 AT1G15440 27.500 160 97 2 142 300 384 525 1.20e-11 67.8
MS.gene02090.t1 AT1G11160 26.500 200 124 4 144 320 53 252 1.24e-11 67.8
MS.gene02090.t1 AT1G15440 27.500 160 97 2 142 300 424 565 1.26e-11 67.8
MS.gene02090.t1 AT5G50230 22.318 233 162 7 225 442 240 468 2.01e-11 66.6
MS.gene02090.t1 AT5G64730 21.233 292 165 9 148 394 17 288 2.02e-11 65.5
MS.gene02090.t1 AT1G24130 27.957 186 104 7 146 321 189 354 2.21e-11 66.2

Find 124 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTAGTATGCAGTTGTTTA+AGG 0.158441 2.2:-57971804 MS.gene02090:intron
ATGAAGAGGTTTAATGTCTT+TGG 0.241848 2.2:+57970944 None:intergenic
TTGATCGTCATATTCATATA+TGG 0.261547 2.2:-57972507 MS.gene02090:CDS
TTTATCTGAGGATGATTCTA+AGG 0.262062 2.2:-57972728 MS.gene02090:CDS
TTCTTGCGGTTGTTCTTTGC+GGG 0.303078 2.2:+57973441 None:intergenic
TTGCTGCTCCTTTATCATCT+TGG 0.312953 2.2:+57973107 None:intergenic
TGATGGTAGCATTGAGCTTT+GGG 0.320486 2.2:-57971452 MS.gene02090:CDS
GATGGTCGCTATTTGGCTAC+TGG 0.333149 2.2:-57972535 MS.gene02090:CDS
TGTGTTATTCAGGGTTAAAT+TGG 0.347385 2.2:-57972809 MS.gene02090:intron
AACAAAACAACAGCATTCTA+AGG 0.349174 2.2:+57971504 None:intergenic
CTTCTTGCGGTTGTTCTTTG+CGG 0.352672 2.2:+57973440 None:intergenic
TAGAGGTCCTGTTTCTTCTC+TGG 0.361793 2.2:-57971993 MS.gene02090:CDS
TTTGACTTTGGCTGCAAGTT+CGG 0.370464 2.2:-57972557 MS.gene02090:CDS
TCTGCAAAATTCCTAGTTGC+TGG 0.375379 2.2:-57970768 MS.gene02090:CDS
GCGCACTAGGGAGCATCTTC+AGG 0.377779 2.2:-57972479 MS.gene02090:intron
TTGATCGAACGATTAAGATA+TGG 0.379793 2.2:-57971931 MS.gene02090:CDS
ATGATGGTAGCATTGAGCTT+TGG 0.379946 2.2:-57971453 MS.gene02090:CDS
AACAGTGACCTTGCCGCATC+TGG 0.381669 2.2:-57971011 MS.gene02090:CDS
GGCGGCTACTCTGCGGCGTT+TGG 0.384477 2.2:+57973383 None:intergenic
GGCTACTCTGCGGCGTTTGG+TGG 0.386767 2.2:+57973386 None:intergenic
AAGTTCGGATGGTCGCTATT+TGG 0.391946 2.2:-57972542 MS.gene02090:CDS
AATAATGAGGAATTCTTGTC+TGG 0.393333 2.2:-57971481 MS.gene02090:CDS
GAGTAGCTGAGGAGTATTTG+AGG 0.396735 2.2:-57973239 MS.gene02090:CDS
GCCGCATCTGGTGCGGGCAA+TGG 0.400402 2.2:-57970999 MS.gene02090:CDS
ATTGTTCGTCAGTACACTCT+TGG 0.407718 2.2:-57971058 MS.gene02090:CDS
TCAGAAAAGCTATTGCTTCA+AGG 0.412080 2.2:-57973068 MS.gene02090:intron
ATCGAAAGGTGATGAGGAAC+AGG 0.431917 2.2:-57973298 MS.gene02090:CDS
CCTAGTTGCTGGAGTTGGTC+AGG 0.436258 2.2:-57970757 MS.gene02090:intron
TCTGAAGTCTCATGGCTTGA+AGG 0.437606 2.2:-57972617 MS.gene02090:CDS
TGAGGAATTCTTGTCTGGTT+CGG 0.438253 2.2:-57971476 MS.gene02090:CDS
TTGATTGTTTACGCAAAGAA+AGG 0.438257 2.2:-57971847 MS.gene02090:CDS
TTCTTGTCTGGTTCGGATGA+TGG 0.442227 2.2:-57971469 MS.gene02090:CDS
TACTTAATACTTCACTTTGG+TGG 0.445587 2.2:+57971870 None:intergenic
AGACTTCAGAACCGAATCAA+TGG 0.449071 2.2:+57972630 None:intergenic
GCTATCGACCAAGATGATAA+AGG 0.457458 2.2:-57973115 MS.gene02090:CDS
ACCTACATGAATACTCTGTT+TGG 0.458123 2.2:-57971893 MS.gene02090:CDS
TGATCGTCATATTCATATAT+GGG 0.461527 2.2:-57972506 MS.gene02090:CDS
GTATAAGTGGCCCATTGATT+CGG 0.462919 2.2:-57972641 MS.gene02090:CDS
ATGAAGATGAGGATGGGGCG+AGG 0.464919 2.2:-57973143 MS.gene02090:CDS
GGAAGTTTAAAGAAAGTGCT+AGG 0.467982 2.2:-57973218 MS.gene02090:CDS
GACCTTGCCGCATCTGGTGC+GGG 0.471991 2.2:-57971005 MS.gene02090:CDS
ATGGTCGCTATTTGGCTACT+GGG 0.473124 2.2:-57972534 MS.gene02090:CDS
GATTCGGTTCTGAAGTCTCA+TGG 0.477291 2.2:-57972625 MS.gene02090:CDS
GCATTCCTCAAAATATGAAT+AGG 0.478685 2.2:+57971412 None:intergenic
TGACGAACAATGGTGATTCT+CGG 0.481332 2.2:+57971070 None:intergenic
GACGAACAATGGTGATTCTC+GGG 0.482880 2.2:+57971071 None:intergenic
TCTCATGATGACAATTTAAG+TGG 0.485861 2.2:+57969386 None:intergenic
GCTACTCTGCGGCGTTTGGT+GGG 0.489709 2.2:+57973387 None:intergenic
GTTAAATTGGATGGTGATGG+TGG 0.493603 2.2:-57972796 MS.gene02090:CDS
TGACCTTGCCGCATCTGGTG+CGG 0.495955 2.2:-57971006 MS.gene02090:CDS
CTAAAAGCCAGAGAAGAAAC+AGG 0.502189 2.2:+57971986 None:intergenic
AGATGGAAGCATTGTGCAAT+GGG 0.503563 2.2:-57972689 MS.gene02090:CDS
CAAAGAGATGAAGATGATGA+TGG 0.512344 2.2:-57973183 MS.gene02090:CDS
TTGTTCGTCAGTACACTCTT+GGG 0.515002 2.2:-57971057 MS.gene02090:CDS
AGAATACGTGAAGCTCGAAA+TGG 0.516436 2.2:-57969422 MS.gene02090:CDS
CTCAGCATCTTGATCTTCAT+CGG 0.521698 2.2:+57973362 None:intergenic
AAATTCCTAGTTGCTGGAGT+TGG 0.523394 2.2:-57970762 MS.gene02090:CDS
GGTCGCTATTTGGCTACTGG+GGG 0.524621 2.2:-57972532 MS.gene02090:CDS
ACCATTGCCCGCACCAGATG+CGG 0.524847 2.2:+57970998 None:intergenic
CAATACTTAATACTTCACTT+TGG 0.525590 2.2:+57971867 None:intergenic
GACTTCAGAACCGAATCAAT+GGG 0.526962 2.2:+57972631 None:intergenic
ACTTTGGCTGCAAGTTCGGA+TGG 0.530603 2.2:-57972553 MS.gene02090:CDS
ATATATGGGATACGCGCACT+AGG 0.531446 2.2:-57972492 MS.gene02090:CDS
TGTTCCTCATCACCTTTCGA+TGG 0.533949 2.2:+57973300 None:intergenic
AGGAAACCACAGCTGAAGCT+AGG 0.534107 2.2:-57973266 MS.gene02090:CDS
TTATCTGAGGATGATTCTAA+GGG 0.538043 2.2:-57972727 MS.gene02090:CDS
TGAAGATGAGGATGGGGCGA+GGG 0.541288 2.2:-57973142 MS.gene02090:CDS
ACCTCTTCATAATGTACCGT+TGG 0.541442 2.2:-57970931 MS.gene02090:intron
AAAGAAAGGGTATTATCTGC+TGG 0.543326 2.2:-57971833 MS.gene02090:CDS
CCTGACCAACTCCAGCAACT+AGG 0.547034 2.2:+57970757 None:intergenic
TGGTCGCTATTTGGCTACTG+GGG 0.547163 2.2:-57972533 MS.gene02090:CDS
AGGTTTACCTAGGTTACCGT+TGG 0.548172 2.2:+57971333 None:intergenic
TGATTGTTTACGCAAAGAAA+GGG 0.549662 2.2:-57971846 MS.gene02090:CDS
TTATTCAGGGTTAAATTGGA+TGG 0.552595 2.2:-57972805 MS.gene02090:intron
AGGAACCTCGTCTAGGAAGG+TGG 0.554796 2.2:-57969448 MS.gene02090:CDS
TACAGGAACCTCGTCTAGGA+AGG 0.557034 2.2:-57969451 MS.gene02090:intron
CAGCATTCTAAGGAAGATGC+AGG 0.563049 2.2:+57971514 None:intergenic
ATACTACCCAACGGTAACCT+AGG 0.563236 2.2:-57971340 MS.gene02090:intron
GGAACCTCGTCTAGGAAGGT+GGG 0.567525 2.2:-57969447 MS.gene02090:CDS
AGGGTTAAATTGGATGGTGA+TGG 0.568487 2.2:-57972799 MS.gene02090:CDS
GATGATGATGAAGATGAGGA+TGG 0.575039 2.2:-57973150 MS.gene02090:CDS
AAGATGGAAGCATTGTGCAA+TGG 0.576859 2.2:-57972690 MS.gene02090:CDS
CTTCCCCACCTTCCTAGACG+AGG 0.577906 2.2:+57969443 None:intergenic
AGAAAGTGCTAGGAGAGAGA+AGG 0.578368 2.2:-57973208 MS.gene02090:CDS
AACAATGGTGATTCTCGGGA+TGG 0.581006 2.2:+57971075 None:intergenic
GAAAATGTGAGAGGTATAAG+TGG 0.582037 2.2:-57972654 MS.gene02090:CDS
AGCTAGGAAGAGAGTAGCTG+AGG 0.585734 2.2:-57973250 MS.gene02090:CDS
GGTTTACCTAGGTTACCGTT+GGG 0.589730 2.2:+57971334 None:intergenic
TTGAGAGGGGAAAATGTGAG+AGG 0.591403 2.2:-57972663 MS.gene02090:CDS
TGCCCGCACCAGATGCGGCA+AGG 0.595355 2.2:+57971003 None:intergenic
ACCAACGGTACATTATGAAG+AGG 0.598217 2.2:+57970930 None:intergenic
TGATGATGAAGATGAGGATG+GGG 0.598492 2.2:-57973148 MS.gene02090:CDS
ATGATGATGAAGATGAGGAT+GGG 0.602093 2.2:-57973149 MS.gene02090:CDS
GTCGCTATTTGGCTACTGGG+GGG 0.602659 2.2:-57972531 MS.gene02090:CDS
TACTGCGGTGGCTTTATCTG+AGG 0.604178 2.2:-57972740 MS.gene02090:CDS
TCTCTTCCTAGCTTCAGCTG+TGG 0.605399 2.2:+57973260 None:intergenic
TGTTCCATCGAAAGGTGATG+AGG 0.606852 2.2:-57973304 MS.gene02090:CDS
GAACCTCGTCTAGGAAGGTG+GGG 0.608130 2.2:-57969446 MS.gene02090:CDS
TCAGTGCAGTGACCGTCTGT+AGG 0.612967 2.2:-57971034 MS.gene02090:CDS
ACAACTGCATACTACGATCA+CGG 0.616853 2.2:+57971810 None:intergenic
TGCTTTGTAGCAGAACCTTG+AGG 0.621073 2.2:+57972592 None:intergenic
TATATGGGATACGCGCACTA+GGG 0.624499 2.2:-57972491 MS.gene02090:CDS
GGTCGCGTGAATTCTTCTTG+CGG 0.627721 2.2:+57973427 None:intergenic
GATGATAAAGGAGCAGCAAG+AGG 0.629548 2.2:-57973103 MS.gene02090:CDS
TGAGGAACAGGAGTCTGAAG+AGG 0.632989 2.2:-57973286 MS.gene02090:CDS
AAGGTCACTGTTCCTACAGA+CGG 0.637361 2.2:+57971022 None:intergenic
AAGAGTGTACTGACGAACAA+TGG 0.638794 2.2:+57971060 None:intergenic
AAACGATCCAGAAAATAGCT+CGG 0.640991 2.2:+57971952 None:intergenic
GAAACAGGACCTCTATGACC+AGG 0.641871 2.2:+57972001 None:intergenic
AAGGAGCAGCAAGAGGAGAG+TGG 0.643486 2.2:-57973096 MS.gene02090:CDS
AGCATCTTGATCTTCATCGG+CGG 0.643638 2.2:+57973365 None:intergenic
CATGGCTTGAAGGATCCTCA+AGG 0.643817 2.2:-57972607 MS.gene02090:CDS
GATTAAGATATGGAATGTTG+AGG 0.643891 2.2:-57971921 MS.gene02090:CDS
TTGTGCAATGGGATGTTGAG+AGG 0.644984 2.2:-57972678 MS.gene02090:CDS
TAAACAATGTGTTACTGCGG+TGG 0.645198 2.2:-57972752 MS.gene02090:CDS
AATGGTGATTCTCGGGATGG+TGG 0.653592 2.2:+57971078 None:intergenic
TGTGCAATGGGATGTTGAGA+GGG 0.654900 2.2:-57972677 MS.gene02090:CDS
GATGGTAGCATTGAGCTTTG+GGG 0.661259 2.2:-57971451 MS.gene02090:CDS
GATAGTGAAATACTACCCAA+CGG 0.686398 2.2:-57971349 MS.gene02090:CDS
TATCTGAGGATGATTCTAAG+GGG 0.700099 2.2:-57972726 MS.gene02090:CDS
GCCAAACAGAGTATTCATGT+AGG 0.705733 2.2:+57971892 None:intergenic
CTTCATCGGCGGCTACTCTG+CGG 0.710277 2.2:+57973376 None:intergenic
GTGCAATGGGATGTTGAGAG+GGG 0.726450 2.2:-57972676 MS.gene02090:CDS
GCATAAACAATGTGTTACTG+CGG 0.761595 2.2:-57972755 MS.gene02090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCAAAAATAAAATTGT+TGG - chr2.2:57970435-57970454 MS.gene02090:intron 10.0%
!! TAAGTGATTAATTAATTAAT+AGG - chr2.2:57971156-57971175 MS.gene02090:intron 10.0%
!! AATTATTCAATTAAACCAAA+AGG + chr2.2:57969880-57969899 None:intergenic 15.0%
!! AATTTGTATTTAGTAATTCT+TGG - chr2.2:57970695-57970714 MS.gene02090:intron 15.0%
!! ATTATTCAATTAAACCAAAA+GGG + chr2.2:57969879-57969898 None:intergenic 15.0%
!!! AAAATTGTTGGATATTTTTT+GGG - chr2.2:57970447-57970466 MS.gene02090:intron 15.0%
!!! ATTTTACTTAATTTTCTCTT+TGG - chr2.2:57972153-57972172 MS.gene02090:intron 15.0%
!!! TAAAATTGTTGGATATTTTT+TGG - chr2.2:57970446-57970465 MS.gene02090:intron 15.0%
!! AAATGAAAATAGAATCATAG+AGG + chr2.2:57971621-57971640 None:intergenic 20.0%
!! AATTGAATAATTGAAGCAAT+GGG - chr2.2:57969946-57969965 MS.gene02090:intron 20.0%
!! ACTATCAATACAGTATTTAA+AGG + chr2.2:57971522-57971541 None:intergenic 20.0%
!! AGAAGTTAGTTAATTGTTAT+GGG - chr2.2:57972638-57972657 MS.gene02090:CDS 20.0%
!! ATGTTATATGTTAACATAAG+CGG - chr2.2:57970660-57970679 MS.gene02090:intron 20.0%
!! GAAGGAATTAATAACATTAA+GGG - chr2.2:57972860-57972879 MS.gene02090:intron 20.0%
!! TAATTGAATAATTGAAGCAA+TGG - chr2.2:57969945-57969964 MS.gene02090:intron 20.0%
!! TAGAAGTTAGTTAATTGTTA+TGG - chr2.2:57972637-57972656 MS.gene02090:CDS 20.0%
!! TAGTGTATTGTTTGTTTAAT+GGG - chr2.2:57973204-57973223 MS.gene02090:CDS 20.0%
!! TATCGAGTAACTAATAAATA+TGG - chr2.2:57973058-57973077 MS.gene02090:intron 20.0%
!! TCAAAAATTGTATTGTAGAA+GGG + chr2.2:57972383-57972402 None:intergenic 20.0%
!! TGAAGGAATTAATAACATTA+AGG - chr2.2:57972859-57972878 MS.gene02090:intron 20.0%
!! TGTTTGTATTTACAGATTAA+GGG - chr2.2:57970517-57970536 MS.gene02090:intron 20.0%
!! TTAGTGTATTGTTTGTTTAA+TGG - chr2.2:57973203-57973222 MS.gene02090:CDS 20.0%
!! TTGAATAATTATTGAAACAG+TGG - chr2.2:57969890-57969909 MS.gene02090:intron 20.0%
!! TTGTTTGTATTTACAGATTA+AGG - chr2.2:57970516-57970535 MS.gene02090:intron 20.0%
!!! AAATTGTTGGATATTTTTTG+GGG - chr2.2:57970448-57970467 MS.gene02090:intron 20.0%
!!! AAATTTTTTCCTATCTTCAA+AGG - chr2.2:57971180-57971199 MS.gene02090:intron 20.0%
!!! ATCTGAAGTAGAAATTTTTA+AGG + chr2.2:57972584-57972603 None:intergenic 20.0%
!!! TTAACAAAATGTCTTTTTAC+AGG - chr2.2:57973364-57973383 MS.gene02090:CDS 20.0%
! AAGATGAAGTCTTAAGTATA+TGG - chr2.2:57971061-57971080 MS.gene02090:CDS 25.0%
! ATATACTTAAGACTTCATCT+TGG + chr2.2:57971062-57971081 None:intergenic 25.0%
! ATATTGAGAATAGTAAGCAA+AGG + chr2.2:57971587-57971606 None:intergenic 25.0%
! ATGTGTATTCTCTGTAATTT+AGG - chr2.2:57971263-57971282 MS.gene02090:intron 25.0%
! ATGTTAAGTGATTAAAGTGA+AGG - chr2.2:57972842-57972861 MS.gene02090:intron 25.0%
! ATTAATAACATTAAGGGTCT+CGG - chr2.2:57972866-57972885 MS.gene02090:intron 25.0%
! CAAAACCATATTGTATATGT+CGG - chr2.2:57971087-57971106 MS.gene02090:CDS 25.0%
! CAAAGTTTCAAAGAATGAAA+AGG + chr2.2:57970387-57970406 None:intergenic 25.0%
! CAATACTTAATACTTCACTT+TGG + chr2.2:57970968-57970987 None:intergenic 25.0%
! CTCAAAAATTGTATTGTAGA+AGG + chr2.2:57972384-57972403 None:intergenic 25.0%
! GATCACTATTTCAAAAAAGA+TGG + chr2.2:57972257-57972276 None:intergenic 25.0%
! GTTATAGTTAGCATTATGTT+AGG - chr2.2:57971687-57971706 MS.gene02090:intron 25.0%
! TACAATTTCTGTTTAGATTG+AGG - chr2.2:57973174-57973193 MS.gene02090:CDS 25.0%
! TAGCAACTAAACTCATTTAT+CGG - chr2.2:57971936-57971955 MS.gene02090:CDS 25.0%
! TCACTTTAATCACTTAACAT+GGG + chr2.2:57972842-57972861 None:intergenic 25.0%
! TGATCGTCATATTCATATAT+GGG - chr2.2:57970326-57970345 MS.gene02090:intron 25.0%
! TTAAGTTAAAAGCAAGAGTT+AGG + chr2.2:57973097-57973116 None:intergenic 25.0%
! TTAGCATGAGCATATTAATA+TGG - chr2.2:57972662-57972681 MS.gene02090:CDS 25.0%
! TTCACTTTAATCACTTAACA+TGG + chr2.2:57972843-57972862 None:intergenic 25.0%
! TTGATCGTCATATTCATATA+TGG - chr2.2:57970325-57970344 MS.gene02090:intron 25.0%
! TTTAGTAAACTCCATTTAGA+AGG - chr2.2:57972981-57973000 MS.gene02090:intron 25.0%
! TTTGGCTAAATTGATTGATT+TGG - chr2.2:57969999-57970018 MS.gene02090:intron 25.0%
!! AAAAGAAATAAAGAAGTGCA+AGG + chr2.2:57972485-57972504 None:intergenic 25.0%
!! AAAGAAATAAAGAAGTGCAA+GGG + chr2.2:57972484-57972503 None:intergenic 25.0%
!! CATAAGAAGTAATTTTCTGA+AGG + chr2.2:57971546-57971565 None:intergenic 25.0%
!! GTAGTATTTCACTATCTTTT+TGG + chr2.2:57971479-57971498 None:intergenic 25.0%
!! TAATGAATCTTTTGTATCAC+AGG - chr2.2:57972009-57972028 MS.gene02090:CDS 25.0%
!! TTGGCTAAATTGATTGATTT+GGG - chr2.2:57970000-57970019 MS.gene02090:intron 25.0%
!! TTTTCTGTCAATAGAGTTTA+AGG + chr2.2:57972554-57972573 None:intergenic 25.0%
!!! AAACTTTGAAATGAACAACA+AGG - chr2.2:57970399-57970418 MS.gene02090:intron 25.0%
!!! AATGAAATTAGCCTTCTAAA+TGG + chr2.2:57972995-57973014 None:intergenic 25.0%
!!! AATTGTTGGATATTTTTTGG+GGG - chr2.2:57970449-57970468 MS.gene02090:intron 25.0%
!!! CTGTTGTTTTGTTAATAATG+AGG - chr2.2:57971338-57971357 MS.gene02090:intron 25.0%
!!! TTACTCTGTTTTTTCTTCTT+TGG - chr2.2:57972125-57972144 MS.gene02090:intron 25.0%
AACAAAACAACAGCATTCTA+AGG + chr2.2:57971331-57971350 None:intergenic 30.0%
AACATCCGACATATACAATA+TGG + chr2.2:57971095-57971114 None:intergenic 30.0%
AACTAACAACTTTGCATAAG+TGG - chr2.2:57973303-57973322 MS.gene02090:CDS 30.0%
AATAATGAGGAATTCTTGTC+TGG - chr2.2:57971351-57971370 MS.gene02090:CDS 30.0%
AATACAAAATCCCCTCAAAA+TGG + chr2.2:57972412-57972431 None:intergenic 30.0%
AATAGTGATCTTGTAGAGAA+TGG - chr2.2:57972267-57972286 MS.gene02090:intron 30.0%
ACAAATGACAGGTGTATTTA+CGG + chr2.2:57971647-57971666 None:intergenic 30.0%
ACAAGTCTACTTCGTATAAT+TGG + chr2.2:57973036-57973055 None:intergenic 30.0%
ACTACAAATACACAAATGAC+AGG + chr2.2:57971658-57971677 None:intergenic 30.0%
ATACAAAATCCCCTCAAAAT+GGG + chr2.2:57972411-57972430 None:intergenic 30.0%
ATGAAGAGGTTTAATGTCTT+TGG + chr2.2:57971891-57971910 None:intergenic 30.0%
CACTTTAATCACTTAACATG+GGG + chr2.2:57972841-57972860 None:intergenic 30.0%
CAGTATTTAAAGGTTTACCT+AGG + chr2.2:57971512-57971531 None:intergenic 30.0%
GATTAAGATATGGAATGTTG+AGG - chr2.2:57970911-57970930 MS.gene02090:intron 30.0%
GCATTCCTCAAAATATGAAT+AGG + chr2.2:57971423-57971442 None:intergenic 30.0%
TACTTAATACTTCACTTTGG+TGG + chr2.2:57970965-57970984 None:intergenic 30.0%
TATCTTCACTATGCAGAAAA+TGG - chr2.2:57971728-57971747 MS.gene02090:intron 30.0%
TATTTATGGCCAAATCTGTA+GGG - chr2.2:57970738-57970757 MS.gene02090:intron 30.0%
TGATTGTTTACGCAAAGAAA+GGG - chr2.2:57970986-57971005 MS.gene02090:CDS 30.0%
TTAACTTAAGCTTAGCAAGT+CGG - chr2.2:57973108-57973127 MS.gene02090:CDS 30.0%
TTATCTGAGGATGATTCTAA+GGG - chr2.2:57970105-57970124 MS.gene02090:intron 30.0%
TTATTCAGGGTTAAATTGGA+TGG - chr2.2:57970027-57970046 MS.gene02090:intron 30.0%
TTGATCGAACGATTAAGATA+TGG - chr2.2:57970901-57970920 MS.gene02090:intron 30.0%
TTGATTGTTTACGCAAAGAA+AGG - chr2.2:57970985-57971004 MS.gene02090:CDS 30.0%
TTTATCTGAGGATGATTCTA+AGG - chr2.2:57970104-57970123 MS.gene02090:intron 30.0%
TTTCTGCATAGTGAAGATAA+TGG + chr2.2:57971727-57971746 None:intergenic 30.0%
! AATTTTACCAAACAAGGGAA+AGG + chr2.2:57970554-57970573 None:intergenic 30.0%
! ACTCTAAGCAATTGAGTTTT+TGG + chr2.2:57972754-57972773 None:intergenic 30.0%
! AGAAGCCTATTCATATTTTG+AGG - chr2.2:57971415-57971434 MS.gene02090:CDS 30.0%
! ATTGTATTGTAGAAGGGTTT+TGG + chr2.2:57972377-57972396 None:intergenic 30.0%
! ATTTTCCAAAAACAGAGCAA+TGG + chr2.2:57971133-57971152 None:intergenic 30.0%
! CAAAAGTACAAGCCTATTTA+TGG - chr2.2:57970724-57970743 MS.gene02090:intron 30.0%
! CTCTAAGCAATTGAGTTTTT+GGG + chr2.2:57972753-57972772 None:intergenic 30.0%
! GAGAGTATGATAACATAGAT+TGG - chr2.2:57972327-57972346 MS.gene02090:intron 30.0%
! GTGACAATTTTACCAAACAA+GGG + chr2.2:57970559-57970578 None:intergenic 30.0%
! TCTAAGCAATTGAGTTTTTG+GGG + chr2.2:57972752-57972771 None:intergenic 30.0%
! TGATTTCAATGTGACTCTTT+TGG - chr2.2:57969981-57970000 MS.gene02090:intron 30.0%
! TGTGACAATTTTACCAAACA+AGG + chr2.2:57970560-57970579 None:intergenic 30.0%
! TGTGTTATTCAGGGTTAAAT+TGG - chr2.2:57970023-57970042 MS.gene02090:intron 30.0%
!! AACTAACTTCTAAAGCAGTT+TGG + chr2.2:57972629-57972648 None:intergenic 30.0%
!!! AAGTAGACAGATTTTGACTT+TGG - chr2.2:57970263-57970282 MS.gene02090:intron 30.0%
!!! GCAATGGTTTTGTTAGATTA+TGG - chr2.2:57971849-57971868 MS.gene02090:CDS 30.0%
AAACGATCCAGAAAATAGCT+CGG + chr2.2:57970883-57970902 None:intergenic 35.0%
ACCACAATTGTATCCCAAAA+TGG - chr2.2:57972933-57972952 MS.gene02090:intron 35.0%
ACCTACATGAATACTCTGTT+TGG - chr2.2:57970939-57970958 MS.gene02090:CDS 35.0%
ATTGCAGTTGAAAGTTTCAC+TGG - chr2.2:57971982-57972001 MS.gene02090:CDS 35.0%
CAAAGAGATGAAGATGATGA+TGG - chr2.2:57969649-57969668 MS.gene02090:intron 35.0%
CATTCAGAAAAAGTCTCATG+AGG + chr2.2:57971236-57971255 None:intergenic 35.0%
CCACAATTGTATCCCAAAAT+GGG - chr2.2:57972934-57972953 MS.gene02090:intron 35.0%
CTACAGATTTGGCCATAAAT+AGG + chr2.2:57970739-57970758 None:intergenic 35.0%
CTATTTATGGCCAAATCTGT+AGG - chr2.2:57970737-57970756 MS.gene02090:intron 35.0%
GAAAAAGTCTCATGAGGAAA+TGG + chr2.2:57971230-57971249 None:intergenic 35.0%
GAAAAGCCTGTAAAAGACAA+CGG + chr2.2:57970812-57970831 None:intergenic 35.0%
GATAGTGAAATACTACCCAA+CGG - chr2.2:57971483-57971502 MS.gene02090:CDS 35.0%
TACAAAATCCCCTCAAAATG+GGG + chr2.2:57972410-57972429 None:intergenic 35.0%
TATCTGAGGATGATTCTAAG+GGG - chr2.2:57970106-57970125 MS.gene02090:intron 35.0%
TCAGAAAAGCTATTGCTTCA+AGG - chr2.2:57969764-57969783 MS.gene02090:intron 35.0%
TCGTAGTATGCAGTTGTTTA+AGG - chr2.2:57971028-57971047 MS.gene02090:CDS 35.0%
TTAGAGTGCATTTGATAGAG+TGG - chr2.2:57972767-57972786 MS.gene02090:CDS 35.0%
TTATACTCCTTTCCCTTGTT+TGG - chr2.2:57970544-57970563 MS.gene02090:intron 35.0%
! AAGAAACAGCCTTTGAAGAT+AGG + chr2.2:57971192-57971211 None:intergenic 35.0%
! ATGATGATGAAGATGAGGAT+GGG - chr2.2:57969683-57969702 MS.gene02090:intron 35.0%
! GAAAATGTGAGAGGTATAAG+TGG - chr2.2:57970178-57970197 MS.gene02090:intron 35.0%
! GAATCTTTTGTATCACAGGT+TGG - chr2.2:57972013-57972032 MS.gene02090:intron 35.0%
! GCATAAACAATGTGTTACTG+CGG - chr2.2:57970077-57970096 MS.gene02090:intron 35.0%
! TGATGATGATGATGAAGATG+AGG - chr2.2:57969678-57969697 MS.gene02090:intron 35.0%
! TGATTTCAATGTGACCCTTT+TGG - chr2.2:57969920-57969939 MS.gene02090:intron 35.0%
! TGATTTGGGTGTGTTATTCA+GGG - chr2.2:57970014-57970033 MS.gene02090:intron 35.0%
! TTTTGTCCGTTGTCTTTTAC+AGG - chr2.2:57970803-57970822 MS.gene02090:CDS 35.0%
!! AAAGAAAGGGTATTATCTGC+TGG - chr2.2:57970999-57971018 MS.gene02090:CDS 35.0%
!! ACGTTCATTAGTTTGTTCTC+TGG - chr2.2:57973231-57973250 MS.gene02090:CDS 35.0%
!! ATCTTCAAAGGCTGTTTCTT+GGG - chr2.2:57971192-57971211 MS.gene02090:intron 35.0%
!! GATAGTGATTTTGACGAAGA+TGG - chr2.2:57969502-57969521 MS.gene02090:intron 35.0%
!! GGAAGTTTAAAGAAAGTGCT+AGG - chr2.2:57969614-57969633 MS.gene02090:intron 35.0%
!! TAGTTGGGACTTGTTATTGT+TGG - chr2.2:57970773-57970792 MS.gene02090:CDS 35.0%
!! TATCTTCAAAGGCTGTTTCT+TGG - chr2.2:57971191-57971210 MS.gene02090:intron 35.0%
!! TTGATTTGGGTGTGTTATTC+AGG - chr2.2:57970013-57970032 MS.gene02090:intron 35.0%
!! TTTGAGTTTCCCCATTTTGA+GGG - chr2.2:57972398-57972417 MS.gene02090:intron 35.0%
!!! ATTTTGGGATACAATTGTGG+TGG + chr2.2:57972934-57972953 None:intergenic 35.0%
!!! GGTTGGTTTTGTGAATTCTT+TGG - chr2.2:57972030-57972049 MS.gene02090:intron 35.0%
!!! TATTGTAGAAGGGTTTTGGA+GGG + chr2.2:57972373-57972392 None:intergenic 35.0%
!!! TGTTTCTTCTCTGGCTTTTA+GGG - chr2.2:57970848-57970867 MS.gene02090:intron 35.0%
!!! TTTTGAGTTTCCCCATTTTG+AGG - chr2.2:57972397-57972416 MS.gene02090:intron 35.0%
AAATTCCTAGTTGCTGGAGT+TGG - chr2.2:57972070-57972089 MS.gene02090:intron 40.0%
ACAACTGCATACTACGATCA+CGG + chr2.2:57971025-57971044 None:intergenic 40.0%
ACCAACGGTACATTATGAAG+AGG + chr2.2:57971905-57971924 None:intergenic 40.0%
ACCTCTTCATAATGTACCGT+TGG - chr2.2:57971901-57971920 MS.gene02090:CDS 40.0%
ACTGCAATTACAGCTAAGCA+TGG + chr2.2:57971970-57971989 None:intergenic 40.0%
AGAATACGTGAAGCTCGAAA+TGG - chr2.2:57973410-57973429 MS.gene02090:CDS 40.0%
AGACTTCAGAACCGAATCAA+TGG + chr2.2:57970205-57970224 None:intergenic 40.0%
AGGGTTAAATTGGATGGTGA+TGG - chr2.2:57970033-57970052 MS.gene02090:intron 40.0%
AGTCCAATACCCTACAGATT+TGG + chr2.2:57970750-57970769 None:intergenic 40.0%
ATTGTTCGTCAGTACACTCT+TGG - chr2.2:57971774-57971793 MS.gene02090:intron 40.0%
CTAAAAGCCAGAGAAGAAAC+AGG + chr2.2:57970849-57970868 None:intergenic 40.0%
CTCAGCATCTTGATCTTCAT+CGG + chr2.2:57969473-57969492 None:intergenic 40.0%
CTCTGTTTGCAAGTTTAGAG+GGG + chr2.2:57972531-57972550 None:intergenic 40.0%
GAACAGATTAGTACAGCTCT+AGG - chr2.2:57970474-57970493 MS.gene02090:intron 40.0%
GACTTCAGAACCGAATCAAT+GGG + chr2.2:57970204-57970223 None:intergenic 40.0%
GCTATCCTTCTACTTACCAA+CGG + chr2.2:57971920-57971939 None:intergenic 40.0%
GCTATCGACCAAGATGATAA+AGG - chr2.2:57969717-57969736 MS.gene02090:intron 40.0%
GCTCTGTTTGCAAGTTTAGA+GGG + chr2.2:57972532-57972551 None:intergenic 40.0%
TCCAAAAACAGAGCAATGGT+GGG + chr2.2:57971129-57971148 None:intergenic 40.0%
TCTGCAAAATTCCTAGTTGC+TGG - chr2.2:57972064-57972083 MS.gene02090:intron 40.0%
TGACGAACAATGGTGATTCT+CGG + chr2.2:57971765-57971784 None:intergenic 40.0%
TGAGGAATTCTTGTCTGGTT+CGG - chr2.2:57971356-57971375 MS.gene02090:CDS 40.0%
TTCCAAAAACAGAGCAATGG+TGG + chr2.2:57971130-57971149 None:intergenic 40.0%
TTGCTGCTCCTTTATCATCT+TGG + chr2.2:57969728-57969747 None:intergenic 40.0%
TTGTTCGTCAGTACACTCTT+GGG - chr2.2:57971775-57971794 MS.gene02090:intron 40.0%
TTTGCAAGTTTAGAGGGGAA+GGG + chr2.2:57972526-57972545 None:intergenic 40.0%
! AAAGAAGTGCAAGGGATGAA+AGG + chr2.2:57972476-57972495 None:intergenic 40.0%
! AAGAAGTGCAAGGGATGAAA+GGG + chr2.2:57972475-57972494 None:intergenic 40.0%
! AAGAGTGTACTGACGAACAA+TGG + chr2.2:57971775-57971794 None:intergenic 40.0%
! ATGATGGTAGCATTGAGCTT+TGG - chr2.2:57971379-57971398 MS.gene02090:CDS 40.0%
! ATGTACCGTTGGTAAGTAGA+AGG - chr2.2:57971912-57971931 MS.gene02090:CDS 40.0%
! GATGATGATGAAGATGAGGA+TGG - chr2.2:57969682-57969701 MS.gene02090:intron 40.0%
! GCCAAACAGAGTATTCATGT+AGG + chr2.2:57970943-57970962 None:intergenic 40.0%
! GTATAAGTGGCCCATTGATT+CGG - chr2.2:57970191-57970210 MS.gene02090:intron 40.0%
! TAAACAATGTGTTACTGCGG+TGG - chr2.2:57970080-57970099 MS.gene02090:intron 40.0%
! TCAAGTGAGACGATTGATTC+AGG + chr2.2:57973264-57973283 None:intergenic 40.0%
! TGATGATGAAGATGAGGATG+GGG - chr2.2:57969684-57969703 MS.gene02090:intron 40.0%
! TGATGGTAGCATTGAGCTTT+GGG - chr2.2:57971380-57971399 MS.gene02090:CDS 40.0%
! TGATTTCAATGCGACCCTTT+TGG - chr2.2:57969862-57969881 MS.gene02090:intron 40.0%
! TGTCTTTTACAGGCTTTTCC+TGG - chr2.2:57970813-57970832 MS.gene02090:intron 40.0%
! TTGAGTTTCCCCATTTTGAG+GGG - chr2.2:57972399-57972418 MS.gene02090:intron 40.0%
! TTTGACTTTGGCTGCAAGTT+CGG - chr2.2:57970275-57970294 MS.gene02090:intron 40.0%
!! AAGATGGAAGCATTGTGCAA+TGG - chr2.2:57970142-57970161 MS.gene02090:intron 40.0%
!! AGATGGAAGCATTGTGCAAT+GGG - chr2.2:57970143-57970162 MS.gene02090:intron 40.0%
!! AGGGTATTGGACTGTTTAGT+TGG - chr2.2:57970757-57970776 MS.gene02090:intron 40.0%
!! GGATGATTCTAAGGGGTTTT+CGG - chr2.2:57970113-57970132 MS.gene02090:intron 40.0%
!! GGGTATTGGACTGTTTAGTT+GGG - chr2.2:57970758-57970777 MS.gene02090:CDS 40.0%
!! GTATTGTAGAAGGGTTTTGG+AGG + chr2.2:57972374-57972393 None:intergenic 40.0%
!! GTTAAATTGGATGGTGATGG+TGG - chr2.2:57970036-57970055 MS.gene02090:intron 40.0%
!!! CCCATTTTGGGATACAATTG+TGG + chr2.2:57972937-57972956 None:intergenic 40.0%
!!! CTGTTTCTTCTCTGGCTTTT+AGG - chr2.2:57970847-57970866 MS.gene02090:intron 40.0%
!!! GATGGTTTTGTTCCATCGAA+AGG - chr2.2:57969520-57969539 MS.gene02090:intron 40.0%
!!! TGTTGGATATTTTTTGGGGG+TGG - chr2.2:57970452-57970471 MS.gene02090:intron 40.0%
AACAATGGTGATTCTCGGGA+TGG + chr2.2:57971760-57971779 None:intergenic 45.0%
AAGCTTAGCAAGTCGGATGT+TGG - chr2.2:57973115-57973134 MS.gene02090:CDS 45.0%
AAGGTCACTGTTCCTACAGA+CGG + chr2.2:57971813-57971832 None:intergenic 45.0%
AAGTTCGGATGGTCGCTATT+TGG - chr2.2:57970290-57970309 MS.gene02090:intron 45.0%
AGCATCTTGATCTTCATCGG+CGG + chr2.2:57969470-57969489 None:intergenic 45.0%
AGCTTAGCAAGTCGGATGTT+GGG - chr2.2:57973116-57973135 MS.gene02090:CDS 45.0%
AGGTTTACCTAGGTTACCGT+TGG + chr2.2:57971502-57971521 None:intergenic 45.0%
ATACTACCCAACGGTAACCT+AGG - chr2.2:57971492-57971511 MS.gene02090:CDS 45.0%
ATATATGGGATACGCGCACT+AGG - chr2.2:57970340-57970359 MS.gene02090:intron 45.0%
ATCGAAAGGTGATGAGGAAC+AGG - chr2.2:57969534-57969553 MS.gene02090:intron 45.0%
ATGGTCGCTATTTGGCTACT+GGG - chr2.2:57970298-57970317 MS.gene02090:intron 45.0%
CTTCTTGCGGTTGTTCTTTG+CGG + chr2.2:57969395-57969414 None:intergenic 45.0%
GACGAACAATGGTGATTCTC+GGG + chr2.2:57971764-57971783 None:intergenic 45.0%
GATGATAAAGGAGCAGCAAG+AGG - chr2.2:57969729-57969748 MS.gene02090:intron 45.0%
GGCTCTGTTTGCAAGTTTAG+AGG + chr2.2:57972533-57972552 None:intergenic 45.0%
GGTTTACCTAGGTTACCGTT+GGG + chr2.2:57971501-57971520 None:intergenic 45.0%
GTCGCATTCAGTTAGGTTTC+AGG - chr2.2:57972904-57972923 MS.gene02090:intron 45.0%
GTTTGCAAGTTTAGAGGGGA+AGG + chr2.2:57972527-57972546 None:intergenic 45.0%
TATATGGGATACGCGCACTA+GGG - chr2.2:57970341-57970360 MS.gene02090:intron 45.0%
TGCTTTGTAGCAGAACCTTG+AGG + chr2.2:57970243-57970262 None:intergenic 45.0%
TGGCCAAATCTGTAGGGTAT+TGG - chr2.2:57970744-57970763 MS.gene02090:intron 45.0%
TGTGCAATGGGATGTTGAGA+GGG - chr2.2:57970155-57970174 MS.gene02090:intron 45.0%
TGTTCCATCGAAAGGTGATG+AGG - chr2.2:57969528-57969547 MS.gene02090:intron 45.0%
TGTTCCTCATCACCTTTCGA+TGG + chr2.2:57969535-57969554 None:intergenic 45.0%
TTAAGGGTCTCGGCTAGATT+TGG - chr2.2:57972876-57972895 MS.gene02090:intron 45.0%
TTCTTGCGGTTGTTCTTTGC+GGG + chr2.2:57969394-57969413 None:intergenic 45.0%
TTGAGAGGGGAAAATGTGAG+AGG - chr2.2:57970169-57970188 MS.gene02090:intron 45.0%
TTGTGCAATGGGATGTTGAG+AGG - chr2.2:57970154-57970173 MS.gene02090:intron 45.0%
! CAGCATTCTAAGGAAGATGC+AGG + chr2.2:57971321-57971340 None:intergenic 45.0%
! GATGGTAGCATTGAGCTTTG+GGG - chr2.2:57971381-57971400 MS.gene02090:CDS 45.0%
! GCAAGGGATGAAAGGGTTTT+GGG + chr2.2:57972468-57972487 None:intergenic 45.0%
! TAGAGGTCCTGTTTCTTCTC+TGG - chr2.2:57970839-57970858 MS.gene02090:intron 45.0%
! TCCCACCATTGCTCTGTTTT+TGG - chr2.2:57971125-57971144 MS.gene02090:intron 45.0%
! TCTGAAGTCTCATGGCTTGA+AGG - chr2.2:57970215-57970234 MS.gene02090:intron 45.0%
! TGCAAGGGATGAAAGGGTTT+TGG + chr2.2:57972469-57972488 None:intergenic 45.0%
!! AGAAAGTGCTAGGAGAGAGA+AGG - chr2.2:57969624-57969643 MS.gene02090:intron 45.0%
!! GAGTAGCTGAGGAGTATTTG+AGG - chr2.2:57969593-57969612 MS.gene02090:intron 45.0%
!! GATTCGGTTCTGAAGTCTCA+TGG - chr2.2:57970207-57970226 MS.gene02090:intron 45.0%
!! TTCTTGTCTGGTTCGGATGA+TGG - chr2.2:57971363-57971382 MS.gene02090:CDS 45.0%
!!! GGAAGTACCGAGCTATTTTC+TGG - chr2.2:57970873-57970892 MS.gene02090:intron 45.0%
!!! TCTTCTCTGGCTTTTAGGGA+AGG - chr2.2:57970852-57970871 MS.gene02090:intron 45.0%
AAGTTTAGAGGGGAAGGGAG+AGG + chr2.2:57972521-57972540 None:intergenic 50.0%
AATGGTGATTCTCGGGATGG+TGG + chr2.2:57971757-57971776 None:intergenic 50.0%
ACTTTGGCTGCAAGTTCGGA+TGG - chr2.2:57970279-57970298 MS.gene02090:intron 50.0%
AGCTAGGAAGAGAGTAGCTG+AGG - chr2.2:57969582-57969601 MS.gene02090:intron 50.0%
AGGAAACCACAGCTGAAGCT+AGG - chr2.2:57969566-57969585 MS.gene02090:intron 50.0%
AGTTTAGAGGGGAAGGGAGA+GGG + chr2.2:57972520-57972539 None:intergenic 50.0%
CATGGCTTGAAGGATCCTCA+AGG - chr2.2:57970225-57970244 MS.gene02090:intron 50.0%
GAAACAGGACCTCTATGACC+AGG + chr2.2:57970834-57970853 None:intergenic 50.0%
GATGGTCGCTATTTGGCTAC+TGG - chr2.2:57970297-57970316 MS.gene02090:intron 50.0%
GGTCGCGTGAATTCTTCTTG+CGG + chr2.2:57969408-57969427 None:intergenic 50.0%
GTGCAATGGGATGTTGAGAG+GGG - chr2.2:57970156-57970175 MS.gene02090:intron 50.0%
TAGCAAGTCGGATGTTGGGA+GGG - chr2.2:57973120-57973139 MS.gene02090:CDS 50.0%
TCTCTTCCTAGCTTCAGCTG+TGG + chr2.2:57969575-57969594 None:intergenic 50.0%
TGAGGAACAGGAGTCTGAAG+AGG - chr2.2:57969546-57969565 MS.gene02090:intron 50.0%
TGGGCCCATCGTCGAAAAAT+GGG + chr2.2:57969429-57969448 None:intergenic 50.0%
TGGTCGCTATTTGGCTACTG+GGG - chr2.2:57970299-57970318 MS.gene02090:intron 50.0%
TTAGCAAGTCGGATGTTGGG+AGG - chr2.2:57973119-57973138 MS.gene02090:CDS 50.0%
TTTGGAGGGATGGGAGTTGA+GGG - chr2.2:57972214-57972233 MS.gene02090:intron 50.0%
! CAGGCTTTTCCTGGTCATAG+AGG - chr2.2:57970822-57970841 MS.gene02090:intron 50.0%
! GCTGTAGCGATGCCCATTTT+GGG + chr2.2:57972949-57972968 None:intergenic 50.0%
! GGGTTTTCGGCTTCGAAAGA+TGG - chr2.2:57970126-57970145 MS.gene02090:intron 50.0%
! TGCTGTAGCGATGCCCATTT+TGG + chr2.2:57972950-57972969 None:intergenic 50.0%
!! GCGACCCATTTTTCGACGAT+GGG - chr2.2:57969422-57969441 MS.gene02090:CDS 50.0%
!! TACTGCGGTGGCTTTATCTG+AGG - chr2.2:57970092-57970111 MS.gene02090:intron 50.0%
!! TTTCTCTTTGGCTCTGCCTG+CGG - chr2.2:57972165-57972184 MS.gene02090:intron 50.0%
!!! AGGGATGAAAGGGTTTTGGG+AGG + chr2.2:57972465-57972484 None:intergenic 50.0%
!!! GGATGAAAGGGTTTTGGGAG+GGG + chr2.2:57972463-57972482 None:intergenic 50.0%
!!! GGGATGAAAGGGTTTTGGGA+GGG + chr2.2:57972464-57972483 None:intergenic 50.0%
AACAGTGACCTTGCCGCATC+TGG - chr2.2:57971821-57971840 MS.gene02090:CDS 55.0%
AAGGAGCAGCAAGAGGAGAG+TGG - chr2.2:57969736-57969755 MS.gene02090:intron 55.0%
AGCAAGTCGGATGTTGGGAG+GGG - chr2.2:57973121-57973140 MS.gene02090:CDS 55.0%
ATGAAGATGAGGATGGGGCG+AGG - chr2.2:57969689-57969708 MS.gene02090:intron 55.0%
CCTGACCAACTCCAGCAACT+AGG + chr2.2:57972078-57972097 None:intergenic 55.0%
GAACCTCGTCTAGGAAGGTG+GGG - chr2.2:57973386-57973405 MS.gene02090:CDS 55.0%
GGCTGCAGTCGCATTCAGTT+AGG - chr2.2:57972897-57972916 MS.gene02090:intron 55.0%
GGTCGCTATTTGGCTACTGG+GGG - chr2.2:57970300-57970319 MS.gene02090:intron 55.0%
GTCGCTATTTGGCTACTGGG+GGG - chr2.2:57970301-57970320 MS.gene02090:intron 55.0%
GTGGGCCCATCGTCGAAAAA+TGG + chr2.2:57969430-57969449 None:intergenic 55.0%
GTTGGGAGGGGGTTACAGAA+AGG - chr2.2:57973133-57973152 MS.gene02090:CDS 55.0%
TCAGTGCAGTGACCGTCTGT+AGG - chr2.2:57971798-57971817 MS.gene02090:intron 55.0%
TGAAGATGAGGATGGGGCGA+GGG - chr2.2:57969690-57969709 MS.gene02090:intron 55.0%
! CCTAGTTGCTGGAGTTGGTC+AGG - chr2.2:57972075-57972094 MS.gene02090:intron 55.0%
! CTTTGGAGGGATGGGAGTTG+AGG - chr2.2:57972213-57972232 MS.gene02090:intron 55.0%
! TTTGGGAGGGGATGGCTTTG+AGG + chr2.2:57972451-57972470 None:intergenic 55.0%
!! CGCGACCCATTTTTCGACGA+TGG - chr2.2:57969421-57969440 MS.gene02090:CDS 55.0%
!! TTCTCTTTGGCTCTGCCTGC+GGG - chr2.2:57972166-57972185 MS.gene02090:intron 55.0%
!! TTGGGAGGGGATGGCTTTGA+GGG + chr2.2:57972450-57972469 None:intergenic 55.0%
!!! GAAAGGGTTTTGGGAGGGGA+TGG + chr2.2:57972459-57972478 None:intergenic 55.0%
ACCATTGCCCGCACCAGATG+CGG + chr2.2:57971837-57971856 None:intergenic 60.0%
CTTCATCGGCGGCTACTCTG+CGG + chr2.2:57969459-57969478 None:intergenic 60.0%
CTTCCCCACCTTCCTAGACG+AGG + chr2.2:57973392-57973411 None:intergenic 60.0%
GAAGGGAGAGGGAGGGCTTT+GGG + chr2.2:57972509-57972528 None:intergenic 60.0%
GCAAGTCGGATGTTGGGAGG+GGG - chr2.2:57973122-57973141 MS.gene02090:CDS 60.0%
GCTACTCTGCGGCGTTTGGT+GGG + chr2.2:57969448-57969467 None:intergenic 60.0%
TAGAGGGGAAGGGAGAGGGA+GGG + chr2.2:57972516-57972535 None:intergenic 60.0%
TGACCTTGCCGCATCTGGTG+CGG - chr2.2:57971826-57971845 MS.gene02090:CDS 60.0%
TTAGAGGGGAAGGGAGAGGG+AGG + chr2.2:57972517-57972536 None:intergenic 60.0%
!! AGGGGAAGGCTTTGGAGGGA+TGG - chr2.2:57972204-57972223 MS.gene02090:intron 60.0%
!! GCGCACTAGGGAGCATCTTC+AGG - chr2.2:57970353-57970372 MS.gene02090:intron 60.0%
!! GGGGAAGGCTTTGGAGGGAT+GGG - chr2.2:57972205-57972224 MS.gene02090:intron 60.0%
!! TGGGAGGGGATGGCTTTGAG+GGG + chr2.2:57972449-57972468 None:intergenic 60.0%
!! TTTGGCTCTGCCTGCGGGTT+TGG - chr2.2:57972171-57972190 MS.gene02090:intron 60.0%
CCTGCGGGTTTGGAGGGAAG+GGG - chr2.2:57972181-57972200 MS.gene02090:intron 65.0%
CGGGTTTGGAGGGAAGGGGA+GGG - chr2.2:57972185-57972204 MS.gene02090:intron 65.0%
GACCTTGCCGCATCTGGTGC+GGG - chr2.2:57971827-57971846 MS.gene02090:CDS 65.0%
GCCTGCGGGTTTGGAGGGAA+GGG - chr2.2:57972180-57972199 MS.gene02090:intron 65.0%
GCTCTGCCTGCGGGTTTGGA+GGG - chr2.2:57972175-57972194 MS.gene02090:intron 65.0%
GGAAGGGAGAGGGAGGGCTT+TGG + chr2.2:57972510-57972529 None:intergenic 65.0%
GGAAGGGGAGGGGAAGGCTT+TGG - chr2.2:57972196-57972215 MS.gene02090:intron 65.0%
GGCTACTCTGCGGCGTTTGG+TGG + chr2.2:57969449-57969468 None:intergenic 65.0%
GGGTTTGGAGGGAAGGGGAG+GGG - chr2.2:57972186-57972205 MS.gene02090:intron 65.0%
TGCCTGCGGGTTTGGAGGGA+AGG - chr2.2:57972179-57972198 MS.gene02090:intron 65.0%
TTGGAGGGAAGGGGAGGGGA+AGG - chr2.2:57972190-57972209 MS.gene02090:intron 65.0%
! AGGGGAGGGGAAGGCTTTGG+AGG - chr2.2:57972199-57972218 MS.gene02090:intron 65.0%
!! GGGGAGGGGAAGGCTTTGGA+GGG - chr2.2:57972200-57972219 MS.gene02090:intron 65.0%
CCCCTTCCCTCCAAACCCGC+AGG + chr2.2:57972184-57972203 None:intergenic 70.0%
GCCGCATCTGGTGCGGGCAA+TGG - chr2.2:57971833-57971852 MS.gene02090:CDS 70.0%
GCGGGTTTGGAGGGAAGGGG+AGG - chr2.2:57972184-57972203 MS.gene02090:intron 70.0%
GGCGGCTACTCTGCGGCGTT+TGG + chr2.2:57969452-57969471 None:intergenic 70.0%
GGCTCTGCCTGCGGGTTTGG+AGG - chr2.2:57972174-57972193 MS.gene02090:intron 70.0%
TGCCCGCACCAGATGCGGCA+AGG + chr2.2:57971832-57971851 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 57969388 57973466 57969388 ID=MS.gene02090
chr2.2 mRNA 57969388 57973466 57969388 ID=MS.gene02090.t1;Parent=MS.gene02090
chr2.2 exon 57973069 57973466 57973069 ID=MS.gene02090.t1.exon1;Parent=MS.gene02090.t1
chr2.2 CDS 57973069 57973466 57973069 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
chr2.2 exon 57972480 57972819 57972480 ID=MS.gene02090.t1.exon2;Parent=MS.gene02090.t1
chr2.2 CDS 57972480 57972819 57972480 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
chr2.2 exon 57971805 57972029 57971805 ID=MS.gene02090.t1.exon3;Parent=MS.gene02090.t1
chr2.2 CDS 57971805 57972029 57971805 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
chr2.2 exon 57971341 57971569 57971341 ID=MS.gene02090.t1.exon4;Parent=MS.gene02090.t1
chr2.2 CDS 57971341 57971569 57971341 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
chr2.2 exon 57970932 57971110 57970932 ID=MS.gene02090.t1.exon5;Parent=MS.gene02090.t1
chr2.2 CDS 57970932 57971110 57970932 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
chr2.2 exon 57970758 57970823 57970758 ID=MS.gene02090.t1.exon6;Parent=MS.gene02090.t1
chr2.2 CDS 57970758 57970823 57970758 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
chr2.2 exon 57969388 57969468 57969388 ID=MS.gene02090.t1.exon7;Parent=MS.gene02090.t1
chr2.2 CDS 57969388 57969468 57969388 ID=cds.MS.gene02090.t1;Parent=MS.gene02090.t1
Gene Sequence

>MS.gene02090

ATGCCCGCAAAGAACAACCGCAAGAAGAATTCACGCGACCCATTTTTCGACGATGGGCCCACCAAACGCCGCAGAGTAGCCGCCGATGAAGATCAAGATGCTGAGATTGAAAGTGATAGTGATTTTGACGAAGATGGTTTTGTTCCATCGAAAGGTGATGAGGAACAGGAGTCTGAAGAGGAAACCACAGCTGAAGCTAGGAAGAGAGTAGCTGAGGAGTATTTGAGGAAGTTTAAAGAAAGTGCTAGGAGAGAGAAGGAACAAAGAGATGAAGATGATGATGGAAGTGATGATGATGATGATGAAGATGAGGATGGGGCGAGGGATTCGCTATCGACCAAGATGATAAAGGAGCAGCAAGAGGAGAGTGGTCGCATCAGAAAAGCTATTGCTTCAAGGTTTGATTTTGATAAATTTGATACATTATTCATTAATTGCTTGTGTTATGTTGTGTTTTGATTTTTAATTTTGATTTGATTTCAATGCGACCCTTTTGGTTTAATTGAATAATTATTGAAACAGTGGCTTATTTTGATTTCAATGTGACCCTTTTGGTTTAATTGAATAATTGAAGCAATGGGTTGTTTTTATTTTGATTTCAATGTGACTCTTTTGGCTAAATTGATTGATTTGGGTGTGTTATTCAGGGTTAAATTGGATGGTGATGGTGGATTTGAAAATTTAGTGAAGCATAAACAATGTGTTACTGCGGTGGCTTTATCTGAGGATGATTCTAAGGGGTTTTCGGCTTCGAAAGATGGAAGCATTGTGCAATGGGATGTTGAGAGGGGAAAATGTGAGAGGTATAAGTGGCCCATTGATTCGGTTCTGAAGTCTCATGGCTTGAAGGATCCTCAAGGTTCTGCTACAAAGCAAAGTAGACAGATTTTGACTTTGGCTGCAAGTTCGGATGGTCGCTATTTGGCTACTGGGGGGCTTGATCGTCATATTCATATATGGGATACGCGCACTAGGGAGCATCTTCAGGTACTTTTGCCTTTTCATTCTTTGAAACTTTGAAATGAACAACAAGGTTATATAGTGAGCATATTCAAAAATAAAATTGTTGGATATTTTTTGGGGGTGGAACAGATTAGTACAGCTCTAGGTGCAATGTGATATTGTTTATTGTTTGTATTTACAGATTAAGGGAAATTTATACTCCTTTCCCTTGTTTGGTAAAATTGTCACATAGCTGTTGATATATGTCTTGCTCTATTGATGCGTTTGATATATTTGTTGTGAATTGTGTGTTTATTCAAACTGAGCAAGATGTTATATGTTAACATAAGCGGTTAACTTATCTTAATTTGTATTTAGTAATTCTTGGCATTTGCAAAAGTACAAGCCTATTTATGGCCAAATCTGTAGGGTATTGGACTGTTTAGTTGGGACTTGTTATTGTTGGTGTTTGATTTTGTCCGTTGTCTTTTACAGGCTTTTCCTGGTCATAGAGGTCCTGTTTCTTCTCTGGCTTTTAGGGAAGGAAGTACCGAGCTATTTTCTGGATCGTTTGATCGAACGATTAAGATATGGAATGTTGAGGACAGAACCTACATGAATACTCTGTTTGGCCACCAAAGTGAAGTATTAAGTATTGATTGTTTACGCAAAGAAAGGGTATTATCTGCTGGCCGTGATCGTAGTATGCAGTTGTTTAAGGTAATCTCACCAAGATGAAGTCTTAAGTATATGGCTTCAAAACCATATTGTATATGTCGGATGTTCTTTACTTTCTCCCACCATTGCTCTGTTTTTGGAAAATTATTAAGTGATTAATTAATTAATAGGAAAATTTTTTCCTATCTTCAAAGGCTGTTTCTTGGGTTATACTTATTTCCATTTCCTCATGAGACTTTTTCTGAATGTTTACTGATGTGTATTCTCTGTAATTTAGGTTCACGAAGAGTCACGTCTTGTATTTCGTGCTCCTGCATCTTCCTTAGAATGCTGTTGTTTTGTTAATAATGAGGAATTCTTGTCTGGTTCGGATGATGGTAGCATTGAGCTTTGGGGTGCAGTACGAAAGAAGCCTATTCATATTTTGAGGAATGCTCATGCTTTACTGACAGATAGCAAGAAATCTGACCAAAAAGATAGTGAAATACTACCCAACGGTAACCTAGGTAAACCTTTAAATACTGTATTGATAGTTCCTTCAGAAAATTACTTCTTATGTGTATTGTATTTTCTTATCCTTTGCTTACTATTCTCAATATGTGTTCTATTTCCTCTATGATTCTATTTTCATTTGCTCCGTAAATACACCTGTCATTTGTGTATTTGTAGTGTGAGTTTAGTTATAGTTAGCATTATGTTAGGATCATAAAGTGATACCATTATCTTCACTATGCAGAAAATGGTCACCACCATCCCGAGAATCACCATTGTTCGTCAGTACACTCTTGGGTCAGTGCAGTGACCGTCTGTAGGAACAGTGACCTTGCCGCATCTGGTGCGGGCAATGGTTTTGTTAGATTATGGACAATTGAAAACGAGACCAAAGACATTAAACCTCTTCATAATGTACCGTTGGTAAGTAGAAGGATAGCAACTAAACTCATTTATCGGATTCATATCCATGCTTAGCTGTAATTGCAGTTGAAAGTTTCACTGGAATTTAATGAATCTTTTGTATCACAGGTTGGTTTTGTGAATTCTTTGGCTTTTGCAAAATCTGCAAAATTCCTAGTTGCTGGAGTTGGTCAGGTACTTAAACTGTTAAATTCTGCATGTATTACTCTGTTTTTTCTTCTTTGGTATACATTTTACTTAATTTTCTCTTTGGCTCTGCCTGCGGGTTTGGAGGGAAGGGGAGGGGAAGGCTTTGGAGGGATGGGAGTTGAGGGAAAAATAGAGAAATCTTCCATCTTTTTTGAAATAGTGATCTTGTAGAGAATGGTAAATGAATGTTTATGATTCAATATATTTTTAATTTTGAGAGTATGATAACATAGATTGGATTTGAAGAAATTATCTAAACCCTCCAAAACCCTTCTACAATACAATTTTTGAGTTTCCCCATTTTGAGGGGATTTTGTATTTGAAGAAAAATAAACCCCTCAAAGCCATCCCCTCCCAAAACCCTTTCATCCCTTGCACTTCTTTATTTCTTTTACCCAAAGCCCTCCCTCTCCCTTCCCCTCTAAACTTGCAAACAGAGCCTTAAACTCTATTGACAGAAAAGCTAGAGCCTTAAAAATTTCTACTTCAGATTTTTTTTTTTTTTTTTTTTTTACCAAACTGCTTTAGAAGTTAGTTAATTGTTATGGGATTAGCATGAGCATATTAATATGGAACTAAATTTTCAGTGATTATGAAATTTTGTGTTCTCTTGCTTTGTTTTCTTAATACTCTTACGCCCCAAAAACTCAATTGCTTAGAGTGCATTTGATAGAGTGGTTGTCTTGCAGACAATTCTGTGTATGTTAGCTTGTGACTGTGAAGCTACCCCATGTTAAGTGATTAAAGTGAAGGAATTAATAACATTAAGGGTCTCGGCTAGATTTGGCTGCAGTCGCATTCAGTTAGGTTTCAGGTTGACCACCACAATTGTATCCCAAAATGGGCATCGCTACAGCAGCTGACGAATCTTTAGTAAACTCCATTTAGAAGGCTAATTTCATTTTCTTCTTCTTTTATATGCCAATTATACGAAGTAGACTTGTTTTATCGAGTAACTAATAAATATGGATTGACGATCAAACCTAACTCTTGCTTTTAACTTAAGCTTAGCAAGTCGGATGTTGGGAGGGGGTTACAGAAAGGATGTTTAGACTCTCAACATACAATTTCTGTTTAGATTGAGGATTTATTTAGTGTATTGTTTGTTTAATGGGTATCACGTTCATTAGTTTGTTCTCTGGTATTTGTCCTGAATCAATCGTCTCACTTGATTCTTACAACTTCATATGCAACTAACAACTTTGCATAAGTGGAACTAACTTTATGTTTTAACTTTTAATACTTTTAACTTTTAACAAAATGTCTTTTTACAGGAACCTCGTCTAGGAAGGTGGGGAAGAATACGTGAAGCTCGAAATGGAGTTTCAATTCTTCCACTTAAATTGTCATCATGA
Protein sequence

>MS.gene02090.t1

MPAKNNRKKNSRDPFFDDGPTKRRRVAADEDQDAEIESDSDFDEDGFVPSKGDEEQESEEETTAEARKRVAEEYLRKFKESARREKEQRDEDDDGSDDDDDEDEDGARDSLSTKMIKEQQEESGRIRKAIASRVKLDGDGGFENLVKHKQCVTAVALSEDDSKGFSASKDGSIVQWDVERGKCERYKWPIDSVLKSHGLKDPQGSATKQSRQILTLAASSDGRYLATGGLDRHIHIWDTRTREHLQAFPGHRGPVSSLAFREGSTELFSGSFDRTIKIWNVEDRTYMNTLFGHQSEVLSIDCLRKERVLSAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVNNEEFLSGSDDGSIELWGAVRKKPIHILRNAHALLTDSKKSDQKDSEILPNGNLENGHHHPENHHCSSVHSWVSAVTVCRNSDLAASGAGNGFVRLWTIENETKDIKPLHNVPLVGFVNSLAFAKSAKFLVAGVGQEPRLGRWGRIREARNGVSILPLKLSS