AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003290.t1 MTR_2g029940 98.718 390 5 0 1 390 115 504 0.0 798
MS.gene003290.t1 MTR_8g106790 26.180 233 148 4 31 258 59 272 2.68e-16 79.7
MS.gene003290.t1 MTR_1g054300 33.607 122 80 1 86 206 360 481 4.89e-16 80.1
MS.gene003290.t1 MTR_4g105700 32.178 202 108 7 38 229 63 245 6.42e-15 77.0
MS.gene003290.t1 MTR_2g436510 25.114 219 143 3 30 246 207 406 6.94e-13 70.1
MS.gene003290.t1 MTR_5g016370 25.431 232 164 5 31 258 243 469 7.44e-13 70.5
MS.gene003290.t1 MTR_1g097140 30.588 170 113 4 93 258 77 245 2.13e-12 68.6
MS.gene003290.t1 MTR_1g072140 21.795 234 157 5 31 257 65 279 3.08e-12 67.4
MS.gene003290.t1 MTR_7g076230 29.375 160 94 3 28 186 404 545 3.53e-12 68.6
MS.gene003290.t1 MTR_4g095058 22.018 327 211 7 31 329 226 536 6.55e-12 67.4
MS.gene003290.t1 MTR_4g119620 22.747 233 152 6 34 258 77 289 7.09e-12 66.2
MS.gene003290.t1 MTR_4g119620 24.891 229 144 7 29 246 21 232 2.17e-11 65.1
MS.gene003290.t1 MTR_4g095058 22.018 327 211 7 31 329 224 534 7.68e-12 67.4
MS.gene003290.t1 MTR_4g123597 26.404 178 117 4 83 246 516 693 7.97e-12 67.4
MS.gene003290.t1 MTR_4g123597 27.848 158 94 4 56 212 85 223 1.16e-11 67.0
MS.gene003290.t1 MTR_4g104380 22.944 231 163 5 111 328 245 473 5.34e-11 64.3
MS.gene003290.t1 MTR_3g106080 35.000 120 59 2 52 171 520 620 5.72e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003290.t1 AT4G05410 59.079 391 147 4 1 390 126 504 5.32e-171 487
MS.gene003290.t1 AT4G21130 59.335 391 137 2 1 390 110 479 3.68e-167 476
MS.gene003290.t1 AT3G18130 24.671 304 184 9 31 328 59 323 5.18e-17 81.6
MS.gene003290.t1 AT1G48630 24.342 304 185 9 31 328 59 323 4.50e-16 79.0
MS.gene003290.t1 AT1G48630 27.615 239 145 7 30 257 10 231 3.43e-13 70.5
MS.gene003290.t1 AT5G52820 32.520 123 82 1 86 207 350 472 8.67e-16 79.3
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 506 715 3.92e-15 77.8
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 527 736 4.38e-15 77.4
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 508 717 4.53e-15 77.4
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 508 717 4.53e-15 77.4
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 508 717 4.53e-15 77.4
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 508 717 4.53e-15 77.4
MS.gene003290.t1 AT2G32700 24.286 210 116 4 94 260 508 717 4.53e-15 77.4
MS.gene003290.t1 AT3G21540 32.911 158 86 4 56 212 85 223 1.07e-14 76.6
MS.gene003290.t1 AT5G16750 32.787 183 95 7 38 212 63 225 1.43e-14 75.9
MS.gene003290.t1 AT1G18080 24.786 234 151 4 31 258 59 273 1.06e-13 72.0
MS.gene003290.t1 AT1G18080 25.322 233 151 5 34 257 14 232 6.12e-11 63.5
MS.gene003290.t1 AT5G67320 26.293 232 162 5 31 258 261 487 5.50e-13 70.9
MS.gene003290.t1 AT2G05720 30.625 160 105 4 34 187 105 264 1.25e-12 68.2
MS.gene003290.t1 AT1G61210 29.487 156 89 2 52 206 117 252 3.98e-12 68.6
MS.gene003290.t1 AT1G24130 27.957 186 104 7 32 207 189 354 4.05e-12 67.8
MS.gene003290.t1 AT4G15900 25.114 219 143 3 30 246 213 412 4.54e-12 67.8
MS.gene003290.t1 AT1G61210 29.487 156 89 2 52 206 117 252 5.56e-12 68.2
MS.gene003290.t1 AT1G61210 29.487 156 89 2 52 206 117 252 5.97e-12 68.2
MS.gene003290.t1 AT1G11160 26.108 203 125 4 28 206 9 210 2.24e-11 66.2
MS.gene003290.t1 AT3G49660 25.309 162 107 1 29 190 18 165 2.69e-11 64.7
MS.gene003290.t1 AT1G15440 28.125 160 96 3 28 186 424 565 2.92e-11 65.9
MS.gene003290.t1 AT1G15440 28.125 160 96 3 28 186 384 525 3.14e-11 65.5
MS.gene003290.t1 AT2G43770 23.482 247 147 8 28 257 89 310 3.36e-11 64.7
MS.gene003290.t1 AT1G11160 26.368 201 123 4 30 206 53 252 3.51e-11 65.5
MS.gene003290.t1 AT1G24530 26.506 249 124 11 32 253 192 408 3.57e-11 64.7
MS.gene003290.t1 AT1G11160 26.368 201 123 4 30 206 53 252 3.85e-11 65.5
MS.gene003290.t1 AT1G11160 26.368 201 123 4 30 206 53 252 3.89e-11 65.5
MS.gene003290.t1 AT5G50230 22.318 233 162 7 111 328 240 468 4.21e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTAGTATGCAGTTGTTTA+AGG 0.158441 2.4:-59634794 MS.gene003290:intron
TTGATCGTCATATTCATATA+TGG 0.249177 2.4:-59635516 MS.gene003290:CDS
TTTATCTGAGGATGATTCTA+AGG 0.255607 2.4:-59635737 MS.gene003290:CDS
GGTTGGGTTTGTCAATTCTT+TGG 0.267712 2.4:-59633792 MS.gene003290:CDS
ATGAAGCGGTTTAATGTCTT+TGG 0.274416 2.4:+59633938 None:intergenic
TGATGGTAGCATTGAGCTTT+GGG 0.320486 2.4:-59634446 MS.gene003290:CDS
GATGGTCGCTATTTGGCAAC+TGG 0.323491 2.4:-59635544 MS.gene003290:CDS
TGTGTTATTTAGGGTTAAAC+TGG 0.332866 2.4:-59635818 MS.gene003290:intron
AAGTTCAGATGGTCGCTATT+TGG 0.336260 2.4:-59635551 MS.gene003290:CDS
AACAAAACAACAGCATTCTA+AGG 0.349174 2.4:+59634498 None:intergenic
GCCGCATCTGGTGCGGGTAA+TGG 0.356528 2.4:-59633993 MS.gene003290:CDS
TAGAGGTCCTGTTTCTTCTC+TGG 0.361793 2.4:-59634983 MS.gene003290:CDS
TCAGCAAAATTCCTAGTTGC+TGG 0.374225 2.4:-59633758 MS.gene003290:CDS
GCGCACTAGGGAGCATCTTC+AGG 0.377779 2.4:-59635488 MS.gene003290:intron
TTGATCGAACGATTAAGATA+TGG 0.379793 2.4:-59634921 MS.gene003290:CDS
ATGATGGTAGCATTGAGCTT+TGG 0.379946 2.4:-59634447 MS.gene003290:CDS
AACAGTGACCTTGCCGCATC+TGG 0.381669 2.4:-59634005 MS.gene003290:CDS
AATAATGAGGAATTCTTGTC+TGG 0.393333 2.4:-59634475 MS.gene003290:CDS
ATTGTTCGTCAGTACACTCT+TGG 0.407718 2.4:-59634052 MS.gene003290:CDS
TCAGAAAAGCTATTGCTTCA+AGG 0.412080 2.4:-59636158 MS.gene003290:intron
AAATTCCTAGTTGCTGGAGT+TGG 0.422760 2.4:-59633752 MS.gene003290:CDS
TGAGGAATTCTTGTCTGGTT+CGG 0.438253 2.4:-59634470 MS.gene003290:CDS
TTGATTGTTTACGCAAAGAA+AGG 0.438257 2.4:-59634837 MS.gene003290:CDS
TTCTTGTCTGGTTCGGATGA+TGG 0.442227 2.4:-59634463 MS.gene003290:CDS
TACTTAATACTTCACTTTGG+TGG 0.445587 2.4:+59634860 None:intergenic
ACTTACATGAATACTCTGTT+TGG 0.448065 2.4:-59634883 MS.gene003290:CDS
TCTGAAGTCCCATGGCTTGA+AGG 0.451032 2.4:-59635626 MS.gene003290:CDS
AATTCCTAGTTGCTGGAGTT+GGG 0.454442 2.4:-59633751 MS.gene003290:CDS
GGACTTCAGAACCGAATCAA+TGG 0.457791 2.4:+59635639 None:intergenic
GCTATCGACGAAGATGATAA+AGG 0.458031 2.4:-59636205 None:intergenic
TGATCGTCATATTCATATAT+GGG 0.461527 2.4:-59635515 MS.gene003290:CDS
GTATAAGTGGCCCATTGATT+CGG 0.462919 2.4:-59635650 MS.gene003290:CDS
GCATTCCTCAAAATATGAAT+AGG 0.478685 2.4:+59634406 None:intergenic
TCTCATGATGACAATTTAAG+TGG 0.478829 2.4:+59632107 None:intergenic
TGACGAACAATGGTGATTCT+CGG 0.481332 2.4:+59634064 None:intergenic
GACCTTGCCGCATCTGGTGC+GGG 0.481462 2.4:-59633999 MS.gene003290:CDS
CCTAGTTGCTGGAGTTGGGC+AGG 0.482464 2.4:-59633747 MS.gene003290:intron
GACGAACAATGGTGATTCTC+GGG 0.482880 2.4:+59634065 None:intergenic
TGACCTTGCCGCATCTGGTG+CGG 0.500692 2.4:-59634000 MS.gene003290:CDS
GACTTCAGAACCGAATCAAT+GGG 0.500825 2.4:+59635640 None:intergenic
CTAAAAGCCAGAGAAGAAAC+AGG 0.502189 2.4:+59634976 None:intergenic
AGATGGAAGCATTGTGCAAT+GGG 0.503563 2.4:-59635698 MS.gene003290:CDS
TTGTTCGTCAGTACACTCTT+GGG 0.515002 2.4:-59634051 MS.gene003290:CDS
CAATACTTAATACTTCACTT+TGG 0.525590 2.4:+59634857 None:intergenic
TTATTTAGGGTTAAACTGGA+TGG 0.527005 2.4:-59635814 MS.gene003290:intron
ATATATGGGATACGCGCACT+AGG 0.531446 2.4:-59635501 MS.gene003290:CDS
ACTTTGGCTGCAAGTTCAGA+TGG 0.532678 2.4:-59635562 MS.gene003290:CDS
ATGGTCGCTATTTGGCAACT+GGG 0.534092 2.4:-59635543 MS.gene003290:CDS
CCTGCCCAACTCCAGCAACT+AGG 0.543124 2.4:+59633747 None:intergenic
AAAGAAAGGGTATTATCTGC+TGG 0.543326 2.4:-59634823 MS.gene003290:CDS
GATTCGGTTCTGAAGTCCCA+TGG 0.547975 2.4:-59635634 MS.gene003290:CDS
AGGTTTACCTAGGTTACCGT+TGG 0.548172 2.4:+59634327 None:intergenic
TGATTGTTTACGCAAAGAAA+GGG 0.549662 2.4:-59634836 MS.gene003290:CDS
AGAATACGTGAAGCTCGTAA+TGG 0.550611 2.4:-59632143 MS.gene003290:CDS
AGGAACCTCGTCTAGGAAGG+TGG 0.554796 2.4:-59632169 MS.gene003290:CDS
TACAGGAACCTCGTCTAGGA+AGG 0.557034 2.4:-59632172 MS.gene003290:intron
TTATCTGAGGATGATTCTAA+GGG 0.562293 2.4:-59635736 MS.gene003290:CDS
CAGCATTCTAAGGAAGATGC+AGG 0.563049 2.4:+59634508 None:intergenic
ATACTACCCAACGGTAACCT+AGG 0.563236 2.4:-59634334 MS.gene003290:intron
CTTGAGGATCCTTCAAGCCA+TGG 0.567504 2.4:+59635617 None:intergenic
GGAACCTCGTCTAGGAAGGT+GGG 0.567525 2.4:-59632168 MS.gene003290:CDS
ACCGCTTCATAATGTACCGT+TGG 0.569065 2.4:-59633925 MS.gene003290:intron
ACCATTACCCGCACCAGATG+CGG 0.576457 2.4:+59633992 None:intergenic
AAGATGGAAGCATTGTGCAA+TGG 0.576859 2.4:-59635699 MS.gene003290:CDS
CTTCCCCACCTTCCTAGACG+AGG 0.577906 2.4:+59632164 None:intergenic
TTGAGGATCCTTCAAGCCAT+GGG 0.579870 2.4:+59635618 None:intergenic
AGGGTTAAACTGGATGGTCA+TGG 0.580849 2.4:-59635808 MS.gene003290:CDS
AACAATGGTGATTCTCGGGA+TGG 0.581006 2.4:+59634069 None:intergenic
GGTTTACCTAGGTTACCGTT+GGG 0.589730 2.4:+59634328 None:intergenic
GGAAATGTGAGAGGTATAAG+TGG 0.597715 2.4:-59635663 MS.gene003290:CDS
TACCCGCACCAGATGCGGCA+AGG 0.597735 2.4:+59633997 None:intergenic
TACTGCGGTGGCTTTATCTG+AGG 0.604178 2.4:-59635749 MS.gene003290:CDS
GAACCTCGTCTAGGAAGGTG+GGG 0.608130 2.4:-59632167 MS.gene003290:CDS
TCAGTGCAGTGACCGTCTGT+AGG 0.612967 2.4:-59634028 MS.gene003290:CDS
TGCAATGGGATGTTGAGAGT+GGG 0.616349 2.4:-59635684 MS.gene003290:CDS
ACAACTGCATACTACGATCA+CGG 0.616853 2.4:+59634800 None:intergenic
TTGAGAGTGGGAAATGTGAG+AGG 0.619145 2.4:-59635672 MS.gene003290:CDS
ACCAACGGTACATTATGAAG+CGG 0.619771 2.4:+59633924 None:intergenic
TGCTTTGTAGCAGAACCTTG+AGG 0.621073 2.4:+59635601 None:intergenic
TATATGGGATACGCGCACTA+GGG 0.624499 2.4:-59635500 MS.gene003290:CDS
GATGATAAAGGAGCAGCAAG+AGG 0.629548 2.4:-59636193 MS.gene003290:CDS
TGGTCGCTATTTGGCAACTG+GGG 0.630469 2.4:-59635542 MS.gene003290:CDS
AAGGTCACTGTTCCTACAGA+CGG 0.637361 2.4:+59634016 None:intergenic
AAGAGTGTACTGACGAACAA+TGG 0.638794 2.4:+59634054 None:intergenic
AAACGATCCAGAAAATAGCT+CGG 0.640991 2.4:+59634942 None:intergenic
GGTCGCTATTTGGCAACTGG+GGG 0.641423 2.4:-59635541 MS.gene003290:CDS
GAAACAGGACCTCTATGACC+AGG 0.641871 2.4:+59634991 None:intergenic
AAGGAGCAGCAAGAGGAGAG+TGG 0.643486 2.4:-59636186 MS.gene003290:CDS
GATTAAGATATGGAATGTTG+AGG 0.643891 2.4:-59634911 MS.gene003290:CDS
TAAACAATGTGTTACTGCGG+TGG 0.645198 2.4:-59635761 MS.gene003290:CDS
AATGGTGATTCTCGGGATGG+TGG 0.653592 2.4:+59634072 None:intergenic
GTGCAATGGGATGTTGAGAG+TGG 0.654323 2.4:-59635685 MS.gene003290:CDS
GTTAAACTGGATGGTCATGG+TGG 0.654394 2.4:-59635805 MS.gene003290:CDS
CATGGCTTGAAGGATCCTCA+AGG 0.657629 2.4:-59635616 MS.gene003290:CDS
GATGGTAGCATTGAGCTTTG+GGG 0.661259 2.4:-59634445 MS.gene003290:CDS
GATAGTGAAATACTACCCAA+CGG 0.686398 2.4:-59634343 MS.gene003290:CDS
GCATAAACAATGTGTTACTG+CGG 0.761595 2.4:-59635764 MS.gene003290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAGTGATTAATTAAT+AGG - chr2.4:59633631-59633650 MS.gene003290:intron 10.0%
!!! ATTAGTATATTGTTTTTTAA+TGG - chr2.4:59635952-59635971 MS.gene003290:intron 10.0%
!!! TTAGTATATTGTTTTTTAAT+GGG - chr2.4:59635953-59635972 MS.gene003290:intron 10.0%
!! AAATGAAAATATAATCATTG+AGG + chr2.4:59634096-59634115 None:intergenic 15.0%
!! AACTAAACTCATTTATTTAT+TGG - chr2.4:59634415-59634434 MS.gene003290:CDS 15.0%
!! AATTATTCAATTAAACCAAA+AGG + chr2.4:59632297-59632316 None:intergenic 15.0%
!! AATTATTCATTTAAACCAAA+AGG + chr2.4:59632355-59632374 None:intergenic 15.0%
!! AATTGAATAATTAAAGCAAT+GGG - chr2.4:59632406-59632425 MS.gene003290:intron 15.0%
!! AATTTGTATTTAGTAATTCT+TGG - chr2.4:59633174-59633193 MS.gene003290:intron 15.0%
!! ATATTCAAAAATACAATTGT+TGG - chr2.4:59632895-59632914 MS.gene003290:intron 15.0%
!! ATTATTCAATTAAACCAAAA+GGG + chr2.4:59632296-59632315 None:intergenic 15.0%
!! ATTATTCATTTAAACCAAAA+GGG + chr2.4:59632354-59632373 None:intergenic 15.0%
!! GAATTACTAAATACAAATTA+AGG + chr2.4:59633173-59633192 None:intergenic 15.0%
!! TAAAAAATTGTATTGTAGAA+GGG + chr2.4:59635008-59635027 None:intergenic 15.0%
!! TAATTGAATAATTAAAGCAA+TGG - chr2.4:59632405-59632424 MS.gene003290:intron 15.0%
!! TTAGTATATGCATATTAATA+TGG - chr2.4:59635280-59635299 MS.gene003290:intron 15.0%
!! TTGAATAATTATTGAAACAA+TGG - chr2.4:59632307-59632326 MS.gene003290:intron 15.0%
!!! ATCCAAAGTATAAATTTTTA+AGG + chr2.4:59635209-59635228 None:intergenic 15.0%
!!! ATTTTACTTAATTTTCTCTT+TGG - chr2.4:59634632-59634651 MS.gene003290:intron 15.0%
!! AAACAAGCAATTTAACAAAA+AGG + chr2.4:59632245-59632264 None:intergenic 20.0%
!! AAATGAATAATTGAAGCAAT+GGG - chr2.4:59632363-59632382 MS.gene003290:intron 20.0%
!! AACAAGCAATTTAACAAAAA+GGG + chr2.4:59632244-59632263 None:intergenic 20.0%
!! AATCACTATTTCAAAAAAGA+TGG + chr2.4:59634736-59634755 None:intergenic 20.0%
!! ACAAATGACAGATATATTTA+CGG + chr2.4:59634122-59634141 None:intergenic 20.0%
!! ACTATCAATACAGTATTTAA+AGG + chr2.4:59633997-59634016 None:intergenic 20.0%
!! AGAAGATAGTTAATTGTTAT+GGG - chr2.4:59635256-59635275 MS.gene003290:intron 20.0%
!! ATGTTATATGTTAACATAAG+CGG - chr2.4:59633139-59633158 MS.gene003290:intron 20.0%
!! CTAAAAAATTGTATTGTAGA+AGG + chr2.4:59635009-59635028 None:intergenic 20.0%
!! GAAGGAATTAATAACATTAA+GGG - chr2.4:59635480-59635499 MS.gene003290:intron 20.0%
!! TAAATGAATAATTGAAGCAA+TGG - chr2.4:59632362-59632381 MS.gene003290:intron 20.0%
!! TAGAAGATAGTTAATTGTTA+TGG - chr2.4:59635255-59635274 MS.gene003290:intron 20.0%
!! TGAAGGAATTAATAACATTA+AGG - chr2.4:59635479-59635498 MS.gene003290:intron 20.0%
!! TGCCTTAAAAATTTATACTT+TGG - chr2.4:59635204-59635223 MS.gene003290:intron 20.0%
!! TGTTTGTATTTACAGATTAA+GGG - chr2.4:59632975-59632994 MS.gene003290:intron 20.0%
!! TTCTAAATGGAGTTTAATAA+AGG + chr2.4:59635602-59635621 None:intergenic 20.0%
!! TTGTTTGTATTTACAGATTA+AGG - chr2.4:59632974-59632993 MS.gene003290:intron 20.0%
!! TTTATTAAACTCCATTTAGA+AGG - chr2.4:59635601-59635620 MS.gene003290:CDS 20.0%
!!! AATTGTTGGATATTTTTTTG+GGG - chr2.4:59632909-59632928 MS.gene003290:intron 20.0%
!!! ACAATTGTTGGATATTTTTT+TGG - chr2.4:59632907-59632926 MS.gene003290:intron 20.0%
!!! CAATTGTTGGATATTTTTTT+GGG - chr2.4:59632908-59632927 MS.gene003290:intron 20.0%
!!! TAATAAATCTTTTGTATCAC+AGG - chr2.4:59634488-59634507 MS.gene003290:CDS 20.0%
!!! TACAATTTTTGTTTAGATTG+AGG - chr2.4:59635910-59635929 MS.gene003290:intron 20.0%
!!! TTAACAAAATGTCTTTTTAC+AGG - chr2.4:59636112-59636131 MS.gene003290:intron 20.0%
! AAGATGAAGTCTTAAGTATA+TGG - chr2.4:59633540-59633559 MS.gene003290:intron 25.0%
! AATGAACAACAAGGTTATAT+AGG - chr2.4:59632868-59632887 MS.gene003290:intron 25.0%
! AATTTCTTTCCTATCTTCAA+AGG - chr2.4:59633655-59633674 MS.gene003290:intron 25.0%
! ATATACTTAAGACTTCATCT+TGG + chr2.4:59633541-59633560 None:intergenic 25.0%
! ATATTGAGAAAAGTAAGCAA+AGG + chr2.4:59634062-59634081 None:intergenic 25.0%
! ATGAACAACAAGGTTATATA+GGG - chr2.4:59632869-59632888 MS.gene003290:intron 25.0%
! ATGTGTATTCTCTGTAATTT+AGG - chr2.4:59633738-59633757 MS.gene003290:intron 25.0%
! ATGTTAAGTGATTAAAGTGA+AGG - chr2.4:59635462-59635481 MS.gene003290:intron 25.0%
! CAAAACCATATTGTATATGT+CGG - chr2.4:59633566-59633585 MS.gene003290:intron 25.0%
! CAAAGTTTCAAAGAATGAAA+AGG + chr2.4:59632847-59632866 None:intergenic 25.0%
! CAATACTTAATACTTCACTT+TGG + chr2.4:59633447-59633466 None:intergenic 25.0%
! CATAAGAAGTAAATTTCTGA+AGG + chr2.4:59634021-59634040 None:intergenic 25.0%
! GTTATAGTTAGCATTATGTT+AGG - chr2.4:59634162-59634181 MS.gene003290:intron 25.0%
! TGATCGTCATATTCATATAT+GGG - chr2.4:59632786-59632805 MS.gene003290:intron 25.0%
! TTGATCGTCATATTCATATA+TGG - chr2.4:59632785-59632804 MS.gene003290:intron 25.0%
! TTTGGCTAAATTGATTGATT+TGG - chr2.4:59632459-59632478 MS.gene003290:intron 25.0%
!! AAAAGAAATAAAGAAGTGCA+AGG + chr2.4:59635110-59635129 None:intergenic 25.0%
!! AAAGAAATAAAGAAGTGCAA+GGG + chr2.4:59635109-59635128 None:intergenic 25.0%
!! AACTAAATTTTCAGCGATTA+TGG - chr2.4:59635303-59635322 MS.gene003290:intron 25.0%
!! AATAGTGATTTTGTAGAGAA+TGG - chr2.4:59634746-59634765 MS.gene003290:intron 25.0%
!! CAAAAGTACAAGCATATTTA+TGG - chr2.4:59633203-59633222 MS.gene003290:intron 25.0%
!! CTAAAGCAATAGAGTTTTTA+GGG + chr2.4:59635370-59635389 None:intergenic 25.0%
!! GTAGTATTTCACTATCTTTT+TGG + chr2.4:59633954-59633973 None:intergenic 25.0%
!! TTGGCTAAATTGATTGATTT+GGG - chr2.4:59632460-59632479 MS.gene003290:intron 25.0%
!! TTTTCTGTCAATAGAGTTTA+AGG + chr2.4:59635179-59635198 None:intergenic 25.0%
!!! AAACTTTGAAATGAACAACA+AGG - chr2.4:59632859-59632878 MS.gene003290:intron 25.0%
!!! AACTATCTTCTAAAGTAGTT+CGG + chr2.4:59635247-59635266 None:intergenic 25.0%
!!! AATGAAATTAGCCTTCTAAA+TGG + chr2.4:59635615-59635634 None:intergenic 25.0%
!!! CTGTTGTTTTGTTAATAATG+AGG - chr2.4:59633813-59633832 MS.gene003290:intron 25.0%
!!! GTAATGGTTTTGTTAGATTA+TGG - chr2.4:59634324-59634343 MS.gene003290:intron 25.0%
!!! TAAAGCAATAGAGTTTTTAG+GGG + chr2.4:59635369-59635388 None:intergenic 25.0%
!!! TCTAAAGCAATAGAGTTTTT+AGG + chr2.4:59635371-59635390 None:intergenic 25.0%
!!! TTACTCTGTTTTTTCTTCTT+TGG - chr2.4:59634604-59634623 MS.gene003290:intron 25.0%
AACAAAACAACAGCATTCTA+AGG + chr2.4:59633806-59633825 None:intergenic 30.0%
AACATCCGACATATACAATA+TGG + chr2.4:59633574-59633593 None:intergenic 30.0%
AAGGTTAAAAGCAAGAGTTA+GGG + chr2.4:59635821-59635840 None:intergenic 30.0%
AATAATGAGGAATTCTTGTC+TGG - chr2.4:59633826-59633845 MS.gene003290:intron 30.0%
AATACAAAATCCCCTCAAAA+TGG + chr2.4:59635037-59635056 None:intergenic 30.0%
ACATGCATTATTATATGCAG+GGG + chr2.4:59634885-59634904 None:intergenic 30.0%
ACCACAATTAAATCCCAAAA+TGG - chr2.4:59635553-59635572 MS.gene003290:CDS 30.0%
ACTTACATGAATACTCTGTT+TGG - chr2.4:59633418-59633437 MS.gene003290:intron 30.0%
ATACAAAATCCCCTCAAAAT+GGG + chr2.4:59635036-59635055 None:intergenic 30.0%
ATATTTATGGCCAAATCTGT+AGG - chr2.4:59633216-59633235 MS.gene003290:intron 30.0%
ATTGGATTCATATTCATGCT+TGG - chr2.4:59634433-59634452 MS.gene003290:CDS 30.0%
CAGTATTTAAAGGTTTACCT+AGG + chr2.4:59633987-59634006 None:intergenic 30.0%
GACATGCATTATTATATGCA+GGG + chr2.4:59634886-59634905 None:intergenic 30.0%
GATTAAGATATGGAATGTTG+AGG - chr2.4:59633390-59633409 MS.gene003290:intron 30.0%
GATTTACAGAAAGGATGTTT+AGG - chr2.4:59635870-59635889 MS.gene003290:intron 30.0%
GCATTCCTCAAAATATGAAT+AGG + chr2.4:59633898-59633917 None:intergenic 30.0%
TAAGGTTAAAAGCAAGAGTT+AGG + chr2.4:59635822-59635841 None:intergenic 30.0%
TACTTAATACTTCACTTTGG+TGG + chr2.4:59633444-59633463 None:intergenic 30.0%
TATCTTCACTATGCAGAAAA+TGG - chr2.4:59634203-59634222 MS.gene003290:intron 30.0%
TATTTATGGCCAAATCTGTA+GGG - chr2.4:59633217-59633236 MS.gene003290:intron 30.0%
TCAAACAATTTGATCGTCAA+TGG + chr2.4:59635769-59635788 None:intergenic 30.0%
TGATTGTTTACGCAAAGAAA+GGG - chr2.4:59633465-59633484 MS.gene003290:intron 30.0%
TTAATAACATTAAGGGTCTC+AGG - chr2.4:59635487-59635506 MS.gene003290:intron 30.0%
TTATCTGAGGATGATTCTAA+GGG - chr2.4:59632565-59632584 MS.gene003290:intron 30.0%
TTGATCGAACGATTAAGATA+TGG - chr2.4:59633380-59633399 MS.gene003290:intron 30.0%
TTGATTGTTTACGCAAAGAA+AGG - chr2.4:59633464-59633483 MS.gene003290:intron 30.0%
TTTATCTGAGGATGATTCTA+AGG - chr2.4:59632564-59632583 MS.gene003290:intron 30.0%
TTTCTGCATAGTGAAGATAA+TGG + chr2.4:59634202-59634221 None:intergenic 30.0%
! AAATCTTTTGTATCACAGGT+TGG - chr2.4:59634492-59634511 MS.gene003290:CDS 30.0%
! AATCTTTTGTATCACAGGTT+GGG - chr2.4:59634493-59634512 MS.gene003290:CDS 30.0%
! AGAAGCCTATTCATATTTTG+AGG - chr2.4:59633890-59633909 MS.gene003290:intron 30.0%
! ATTGTATTGTAGAAGGGTTT+TGG + chr2.4:59635002-59635021 None:intergenic 30.0%
! ATTTTCCAAAAACAGAGCAA+TGG + chr2.4:59633612-59633631 None:intergenic 30.0%
! GAGAGTATGATAACATAGAT+TGG - chr2.4:59634952-59634971 MS.gene003290:CDS 30.0%
! TGATTTCAATGTAACCCTTT+TGG - chr2.4:59632337-59632356 MS.gene003290:intron 30.0%
! TGATTTCAATGTGACTCTTT+TGG - chr2.4:59632441-59632460 MS.gene003290:intron 30.0%
! TTATTTAGGGTTAAACTGGA+TGG - chr2.4:59632487-59632506 MS.gene003290:intron 30.0%
! TTTTGTCCATTGTCTTTTAC+AGG - chr2.4:59633282-59633301 MS.gene003290:intron 30.0%
!! AAAGCAATAGAGTTTTTAGG+GGG + chr2.4:59635368-59635387 None:intergenic 30.0%
!! TGATTTGGGTGTGTTATTTA+GGG - chr2.4:59632474-59632493 MS.gene003290:intron 30.0%
!! TGTGTTATTTAGGGTTAAAC+TGG - chr2.4:59632483-59632502 MS.gene003290:intron 30.0%
!! TTGATTTGGGTGTGTTATTT+AGG - chr2.4:59632473-59632492 MS.gene003290:intron 30.0%
!!! AAGTAGACAGATTTTGACTT+TGG - chr2.4:59632723-59632742 MS.gene003290:intron 30.0%
!!! ATTTTGGGATTTAATTGTGG+TGG + chr2.4:59635554-59635573 None:intergenic 30.0%
!!! CTTTTTCAAGGAGAATAAGT+GGG - chr2.4:59634837-59634856 MS.gene003290:CDS 30.0%
!!! TCCATTTTGGGATTTAATTG+TGG + chr2.4:59635557-59635576 None:intergenic 30.0%
!!! TTTTAGTTTCCCCATTTTGA+GGG - chr2.4:59635023-59635042 MS.gene003290:intron 30.0%
!!! TTTTTAGTTTCCCCATTTTG+AGG - chr2.4:59635022-59635041 MS.gene003290:intron 30.0%
!!! TTTTTCAAGGAGAATAAGTG+GGG - chr2.4:59634838-59634857 MS.gene003290:CDS 30.0%
AAACGATCCAGAAAATAGCT+CGG + chr2.4:59633362-59633381 None:intergenic 35.0%
AACTAACAGCTTTGCATAAG+TGG - chr2.4:59636052-59636071 MS.gene003290:intron 35.0%
ACAAGTCTACTTCGTATAAC+TGG + chr2.4:59635658-59635677 None:intergenic 35.0%
ATGAAGCGGTTTAATGTCTT+TGG + chr2.4:59634366-59634385 None:intergenic 35.0%
ATTGCAGTTGGAAATTTCAC+TGG - chr2.4:59634461-59634480 MS.gene003290:CDS 35.0%
CAAAATGGATATTGCTACAG+CGG - chr2.4:59635568-59635587 MS.gene003290:CDS 35.0%
CATAGCTGAAGTCAAATGTT+GGG - chr2.4:59635844-59635863 MS.gene003290:intron 35.0%
CATTCAGAAAAAGTCTCATG+AGG + chr2.4:59633711-59633730 None:intergenic 35.0%
CCACTTATTCTCCTTGAAAA+AGG + chr2.4:59634839-59634858 None:intergenic 35.0%
GAAAAAGTCTCATGAGGAAA+TGG + chr2.4:59633705-59633724 None:intergenic 35.0%
GAAAAGCCTGTAAAAGACAA+TGG + chr2.4:59633291-59633310 None:intergenic 35.0%
GAATAGATTAGTACAGCTCT+AGG - chr2.4:59632934-59632953 MS.gene003290:intron 35.0%
GATAGTGAAATACTACCCAA+CGG - chr2.4:59633958-59633977 MS.gene003290:CDS 35.0%
GGACATGCATTATTATATGC+AGG + chr2.4:59634887-59634906 None:intergenic 35.0%
TACAAAATCCCCTCAAAATG+GGG + chr2.4:59635035-59635054 None:intergenic 35.0%
TCAGAAAAGCTATTGCTTCA+AGG - chr2.4:59632143-59632162 MS.gene003290:CDS 35.0%
TCGTAGTATGCAGTTGTTTA+AGG - chr2.4:59633507-59633526 MS.gene003290:intron 35.0%
TGAATAATTGCAGCTGTTGT+TGG - chr2.4:59635732-59635751 MS.gene003290:CDS 35.0%
TTAGAGTGCATTTGATAGAG+TGG - chr2.4:59635386-59635405 MS.gene003290:intron 35.0%
TTATACTCCTTTCCCTTGTT+TGG - chr2.4:59633002-59633021 MS.gene003290:intron 35.0%
! AAGAAACAGCCTTTGAAGAT+AGG + chr2.4:59633667-59633686 None:intergenic 35.0%
! GCATAAACAATGTGTTACTG+CGG - chr2.4:59632537-59632556 MS.gene003290:intron 35.0%
! GCTGTAGCAATATCCATTTT+GGG + chr2.4:59635569-59635588 None:intergenic 35.0%
! TCAAGTGAGATGATTGATTC+AGG + chr2.4:59636013-59636032 None:intergenic 35.0%
! TGATTTCAATGTGACCCTTT+TGG - chr2.4:59632279-59632298 MS.gene003290:intron 35.0%
! TTTGACTTCAGCTATGCTTA+AGG + chr2.4:59635840-59635859 None:intergenic 35.0%
!! AAAGAAAGGGTATTATCTGC+TGG - chr2.4:59633478-59633497 MS.gene003290:intron 35.0%
!! ACGTTCATTAGTTTGTTGTC+TGG - chr2.4:59635980-59635999 MS.gene003290:intron 35.0%
!! ATCTTCAAAGGCTGTTTCTT+GGG - chr2.4:59633667-59633686 MS.gene003290:intron 35.0%
!! GCTAGAATTCACCTTTTTCA+AGG - chr2.4:59634825-59634844 MS.gene003290:CDS 35.0%
!! TAGTTGGGACTTGTTATTGT+TGG - chr2.4:59633252-59633271 MS.gene003290:intron 35.0%
!! TATCTTCAAAGGCTGTTTCT+TGG - chr2.4:59633666-59633685 MS.gene003290:intron 35.0%
!! TTTAGTTTCCCCATTTTGAG+GGG - chr2.4:59635024-59635043 MS.gene003290:intron 35.0%
!!! AATGGGTTGTTTGACACTTT+TGG - chr2.4:59632380-59632399 MS.gene003290:intron 35.0%
!!! CCTTTTTCAAGGAGAATAAG+TGG - chr2.4:59634836-59634855 MS.gene003290:CDS 35.0%
!!! TATTGTAGAAGGGTTTTGGA+GGG + chr2.4:59634998-59635017 None:intergenic 35.0%
!!! TGTTGGATATTTTTTTGGGG+TGG - chr2.4:59632912-59632931 MS.gene003290:intron 35.0%
!!! TGTTTCTTCTCTGGCTTTTA+GGG - chr2.4:59633327-59633346 MS.gene003290:intron 35.0%
!!! TTTTAGGGGGTAAGAGTATT+AGG + chr2.4:59635355-59635374 None:intergenic 35.0%
AAAGCAAGAGTTAGGGTTGA+CGG + chr2.4:59635814-59635833 None:intergenic 40.0%
AAAGGTGAATTCTAGCCACT+AGG + chr2.4:59634821-59634840 None:intergenic 40.0%
AAATTCCTAGTTGCTGGAGT+TGG - chr2.4:59634549-59634568 MS.gene003290:intron 40.0%
AACGTTACCAAACAAGGGAA+AGG + chr2.4:59633012-59633031 None:intergenic 40.0%
AAGTTCAGATGGTCGCTATT+TGG - chr2.4:59632750-59632769 MS.gene003290:intron 40.0%
AATTCCTAGTTGCTGGAGTT+GGG - chr2.4:59634550-59634569 MS.gene003290:intron 40.0%
ACAACTGCATACTACGATCA+CGG + chr2.4:59633504-59633523 None:intergenic 40.0%
ACCAACGGTACATTATGAAG+CGG + chr2.4:59634380-59634399 None:intergenic 40.0%
AGAACGAACGTTACCAAACA+AGG + chr2.4:59633018-59633037 None:intergenic 40.0%
AGAATACGTGAAGCTCGTAA+TGG - chr2.4:59636158-59636177 MS.gene003290:intron 40.0%
AGTCCAATACCCTACAGATT+TGG + chr2.4:59633229-59633248 None:intergenic 40.0%
ATTGTTCGTCAGTACACTCT+TGG - chr2.4:59634249-59634268 MS.gene003290:intron 40.0%
CTAAAAGCCAGAGAAGAAAC+AGG + chr2.4:59633328-59633347 None:intergenic 40.0%
CTCTGTTTGCAAGTTTAGAG+GGG + chr2.4:59635156-59635175 None:intergenic 40.0%
GAACGAACGTTACCAAACAA+GGG + chr2.4:59633017-59633036 None:intergenic 40.0%
GACTTCAGAACCGAATCAAT+GGG + chr2.4:59632664-59632683 None:intergenic 40.0%
GCATAGCTGAAGTCAAATGT+TGG - chr2.4:59635843-59635862 MS.gene003290:intron 40.0%
GCTATCCTTCTACTTACCAA+CGG + chr2.4:59634395-59634414 None:intergenic 40.0%
GCTCTGTTTGCAAGTTTAGA+GGG + chr2.4:59635157-59635176 None:intergenic 40.0%
GGTTGGGTTTGTCAATTCTT+TGG - chr2.4:59634509-59634528 MS.gene003290:CDS 40.0%
GTTGGGAGTGATTTACAGAA+AGG - chr2.4:59635861-59635880 MS.gene003290:intron 40.0%
TCAGCAAAATTCCTAGTTGC+TGG - chr2.4:59634543-59634562 MS.gene003290:CDS 40.0%
TCCAAAAACAGAGCAATGGT+GGG + chr2.4:59633608-59633627 None:intergenic 40.0%
TGACGAACAATGGTGATTCT+CGG + chr2.4:59634240-59634259 None:intergenic 40.0%
TGAGGAATTCTTGTCTGGTT+CGG - chr2.4:59633831-59633850 MS.gene003290:intron 40.0%
TTCCAAAAACAGAGCAATGG+TGG + chr2.4:59633609-59633628 None:intergenic 40.0%
TTGTTCGTCAGTACACTCTT+GGG - chr2.4:59634250-59634269 MS.gene003290:intron 40.0%
TTTGCAAGTTTAGAGGGGAA+GGG + chr2.4:59635151-59635170 None:intergenic 40.0%
! AAAGAAGTGCAAGGGATGAA+GGG + chr2.4:59635101-59635120 None:intergenic 40.0%
! AAGAGTGTACTGACGAACAA+TGG + chr2.4:59634250-59634269 None:intergenic 40.0%
! ATGATGGTAGCATTGAGCTT+TGG - chr2.4:59633854-59633873 MS.gene003290:intron 40.0%
! ATGTACCGTTGGTAAGTAGA+AGG - chr2.4:59634387-59634406 MS.gene003290:CDS 40.0%
! CGCTGTAGCAATATCCATTT+TGG + chr2.4:59635570-59635589 None:intergenic 40.0%
! GGAAATGTGAGAGGTATAAG+TGG - chr2.4:59632638-59632657 MS.gene003290:intron 40.0%
! GGATTTTCAGCTTCGAAAGA+TGG - chr2.4:59632586-59632605 MS.gene003290:intron 40.0%
! GTATAAGTGGCCCATTGATT+CGG - chr2.4:59632651-59632670 MS.gene003290:intron 40.0%
! TAAACAATGTGTTACTGCGG+TGG - chr2.4:59632540-59632559 MS.gene003290:intron 40.0%
! TAAAGAAGTGCAAGGGATGA+AGG + chr2.4:59635102-59635121 None:intergenic 40.0%
! TGATGGTAGCATTGAGCTTT+GGG - chr2.4:59633855-59633874 MS.gene003290:intron 40.0%
! TGTCTTTTACAGGCTTTTCC+TGG - chr2.4:59633292-59633311 MS.gene003290:intron 40.0%
! TTTTTACAGGAACCTCGTCT+AGG - chr2.4:59636125-59636144 MS.gene003290:intron 40.0%
!! AAGATGGAAGCATTGTGCAA+TGG - chr2.4:59632602-59632621 MS.gene003290:intron 40.0%
!! AGATGGAAGCATTGTGCAAT+GGG - chr2.4:59632603-59632622 MS.gene003290:intron 40.0%
!! AGGGTATTGGACTGTTTAGT+TGG - chr2.4:59633236-59633255 MS.gene003290:intron 40.0%
!! GGGTATTGGACTGTTTAGTT+GGG - chr2.4:59633237-59633256 MS.gene003290:intron 40.0%
!! GTATTGTAGAAGGGTTTTGG+AGG + chr2.4:59634999-59635018 None:intergenic 40.0%
!! TTTCTCTTTGGCTCTGCTTA+CGG - chr2.4:59634644-59634663 MS.gene003290:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr2.4:59634803-59634822 MS.gene003290:CDS 40.0%
!!! CTGTTTCTTCTCTGGCTTTT+AGG - chr2.4:59633326-59633345 MS.gene003290:intron 40.0%
AACAATGGTGATTCTCGGGA+TGG + chr2.4:59634235-59634254 None:intergenic 45.0%
AAGGGTCTCAGGTCTAGATT+TGG - chr2.4:59635498-59635517 MS.gene003290:CDS 45.0%
AAGGTCACTGTTCCTACAGA+CGG + chr2.4:59634288-59634307 None:intergenic 45.0%
AAGTTTAGAGGGGAAGGGAT+AGG + chr2.4:59635146-59635165 None:intergenic 45.0%
ACCGCTTCATAATGTACCGT+TGG - chr2.4:59634376-59634395 MS.gene003290:CDS 45.0%
ACTTTGGCTGCAAGTTCAGA+TGG - chr2.4:59632739-59632758 MS.gene003290:intron 45.0%
AGGGTTAAACTGGATGGTCA+TGG - chr2.4:59632493-59632512 MS.gene003290:intron 45.0%
AGGTTTACCTAGGTTACCGT+TGG + chr2.4:59633977-59633996 None:intergenic 45.0%
AGTTTAGAGGGGAAGGGATA+GGG + chr2.4:59635145-59635164 None:intergenic 45.0%
ATACTACCCAACGGTAACCT+AGG - chr2.4:59633967-59633986 MS.gene003290:CDS 45.0%
ATATATGGGATACGCGCACT+AGG - chr2.4:59632800-59632819 MS.gene003290:intron 45.0%
ATGGTCGCTATTTGGCAACT+GGG - chr2.4:59632758-59632777 MS.gene003290:intron 45.0%
ATTATTATATGCAGGGGCCG+GGG + chr2.4:59634879-59634898 None:intergenic 45.0%
CACTCACTCAGTTAGGTTTC+AGG - chr2.4:59635524-59635543 MS.gene003290:CDS 45.0%
CATTATTATATGCAGGGGCC+GGG + chr2.4:59634880-59634899 None:intergenic 45.0%
GACGAACAATGGTGATTCTC+GGG + chr2.4:59634239-59634258 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG + chr2.4:59634881-59634900 None:intergenic 45.0%
GGACTTCAGAACCGAATCAA+TGG + chr2.4:59632665-59632684 None:intergenic 45.0%
GGCTCTGTTTGCAAGTTTAG+AGG + chr2.4:59635158-59635177 None:intergenic 45.0%
GGTTTACCTAGGTTACCGTT+GGG + chr2.4:59633976-59633995 None:intergenic 45.0%
GTTAAACTGGATGGTCATGG+TGG - chr2.4:59632496-59632515 MS.gene003290:intron 45.0%
GTTTGCAAGTTTAGAGGGGA+AGG + chr2.4:59635152-59635171 None:intergenic 45.0%
TATATGGGATACGCGCACTA+GGG - chr2.4:59632801-59632820 MS.gene003290:intron 45.0%
TGCAATGGGATGTTGAGAGT+GGG - chr2.4:59632617-59632636 MS.gene003290:intron 45.0%
TGCTTGGCTGTAATTGCAGT+TGG - chr2.4:59634449-59634468 MS.gene003290:CDS 45.0%
TGCTTTGTAGCAGAACCTTG+AGG + chr2.4:59632703-59632722 None:intergenic 45.0%
TGGCCAAATCTGTAGGGTAT+TGG - chr2.4:59633223-59633242 MS.gene003290:intron 45.0%
TTGAGAGTGGGAAATGTGAG+AGG - chr2.4:59632629-59632648 MS.gene003290:intron 45.0%
TTGAGGATCCTTCAAGCCAT+GGG + chr2.4:59632686-59632705 None:intergenic 45.0%
! CAGCATTCTAAGGAAGATGC+AGG + chr2.4:59633796-59633815 None:intergenic 45.0%
! GATGGTAGCATTGAGCTTTG+GGG - chr2.4:59633856-59633875 MS.gene003290:intron 45.0%
! TAGAGGTCCTGTTTCTTCTC+TGG - chr2.4:59633318-59633337 MS.gene003290:intron 45.0%
! TCCCACCATTGCTCTGTTTT+TGG - chr2.4:59633604-59633623 MS.gene003290:intron 45.0%
! TGCAAGGGATGAAGGGTTTT+GGG + chr2.4:59635094-59635113 None:intergenic 45.0%
!! TTCTCTTTGGCTCTGCTTAC+GGG - chr2.4:59634645-59634664 MS.gene003290:intron 45.0%
!! TTCTTGTCTGGTTCGGATGA+TGG - chr2.4:59633838-59633857 MS.gene003290:intron 45.0%
!!! GGAAGTACCGAGCTATTTTC+TGG - chr2.4:59633352-59633371 MS.gene003290:intron 45.0%
!!! TCTTCTCTGGCTTTTAGGGA+AGG - chr2.4:59633331-59633350 MS.gene003290:intron 45.0%
!!! TCAATATATATTTTTTTTTT+TGG - chr2.4:59634787-59634806 MS.gene003290:intron 5.0%
AATGGTGATTCTCGGGATGG+TGG + chr2.4:59634232-59634251 None:intergenic 50.0%
CATGGCTTGAAGGATCCTCA+AGG - chr2.4:59632685-59632704 MS.gene003290:intron 50.0%
CTTGAGGATCCTTCAAGCCA+TGG + chr2.4:59632687-59632706 None:intergenic 50.0%
GAAACAGGACCTCTATGACC+AGG + chr2.4:59633313-59633332 None:intergenic 50.0%
GAAGGGATAGGGAGAGCTTT+GGG + chr2.4:59635134-59635153 None:intergenic 50.0%
GATATTGCTACAGCGGCTGA+CGG - chr2.4:59635575-59635594 MS.gene003290:CDS 50.0%
GATGGTCGCTATTTGGCAAC+TGG - chr2.4:59632757-59632776 MS.gene003290:intron 50.0%
GTGCAATGGGATGTTGAGAG+TGG - chr2.4:59632616-59632635 MS.gene003290:intron 50.0%
TACAGGAACCTCGTCTAGGA+AGG - chr2.4:59636129-59636148 MS.gene003290:intron 50.0%
TCCCAACTGAGCTATGCTCA+CGG - chr2.4:59634908-59634927 MS.gene003290:CDS 50.0%
TGAGCATAGCTCAGTTGGGA+GGG + chr2.4:59634908-59634927 None:intergenic 50.0%
TGGTCGCTATTTGGCAACTG+GGG - chr2.4:59632759-59632778 MS.gene003290:intron 50.0%
TTGGCTGCACTCACTCAGTT+AGG - chr2.4:59635517-59635536 MS.gene003290:CDS 50.0%
! AGGAGAATAAGTGGGGTGTC+CGG - chr2.4:59634845-59634864 MS.gene003290:CDS 50.0%
! CAGGCTTTTCCTGGTCATAG+AGG - chr2.4:59633301-59633320 MS.gene003290:intron 50.0%
! GTGCAAGGGATGAAGGGTTT+TGG + chr2.4:59635095-59635114 None:intergenic 50.0%
! TCTGAAGTCCCATGGCTTGA+AGG - chr2.4:59632675-59632694 MS.gene003290:intron 50.0%
!! GATTCGGTTCTGAAGTCCCA+TGG - chr2.4:59632667-59632686 MS.gene003290:intron 50.0%
!! TACTGCGGTGGCTTTATCTG+AGG - chr2.4:59632552-59632571 MS.gene003290:intron 50.0%
!! TTTGGCTCTGCTTACGGGTT+CGG - chr2.4:59634650-59634669 MS.gene003290:intron 50.0%
!!! AAGGGATGAAGGGTTTTGGG+AGG + chr2.4:59635091-59635110 None:intergenic 50.0%
!!! AGGGATGAAGGGTTTTGGGA+GGG + chr2.4:59635090-59635109 None:intergenic 50.0%
AACAGTGACCTTGCCGCATC+TGG - chr2.4:59634296-59634315 MS.gene003290:intron 55.0%
AAGGAGCAGCAAGAGGAGAG+TGG - chr2.4:59632115-59632134 MS.gene003290:CDS 55.0%
ACCATTACCCGCACCAGATG+CGG + chr2.4:59634312-59634331 None:intergenic 55.0%
AGGAACCTCGTCTAGGAAGG+TGG - chr2.4:59636132-59636151 MS.gene003290:intron 55.0%
CCAACTGAGCTATGCTCACG+GGG - chr2.4:59634910-59634929 MS.gene003290:CDS 55.0%
CCCAACTGAGCTATGCTCAC+GGG - chr2.4:59634909-59634928 MS.gene003290:CDS 55.0%
CCCGTGAGCATAGCTCAGTT+GGG + chr2.4:59634912-59634931 None:intergenic 55.0%
CTTACGGGTTCGGAGAGAAG+GGG - chr2.4:59634660-59634679 MS.gene003290:intron 55.0%
GAACCTCGTCTAGGAAGGTG+GGG - chr2.4:59636134-59636153 MS.gene003290:intron 55.0%
GCTTACGGGTTCGGAGAGAA+GGG - chr2.4:59634659-59634678 MS.gene003290:intron 55.0%
GGAACCTCGTCTAGGAAGGT+GGG - chr2.4:59636133-59636152 MS.gene003290:intron 55.0%
GGAAGGGATAGGGAGAGCTT+TGG + chr2.4:59635135-59635154 None:intergenic 55.0%
GGTCGCTATTTGGCAACTGG+GGG - chr2.4:59632760-59632779 MS.gene003290:intron 55.0%
GTGAGCATAGCTCAGTTGGG+AGG + chr2.4:59634909-59634928 None:intergenic 55.0%
TCAGTGCAGTGACCGTCTGT+AGG - chr2.4:59634273-59634292 MS.gene003290:intron 55.0%
TGCTTACGGGTTCGGAGAGA+AGG - chr2.4:59634658-59634677 MS.gene003290:intron 55.0%
! GAGAATAAGTGGGGTGTCCG+GGG - chr2.4:59634847-59634866 MS.gene003290:CDS 55.0%
! GGAGAATAAGTGGGGTGTCC+GGG - chr2.4:59634846-59634865 MS.gene003290:CDS 55.0%
! TTTGGGAGGGGATGGCTTTG+AGG + chr2.4:59635077-59635096 None:intergenic 55.0%
!! TTGGGAGGGGATGGCTTTGA+GGG + chr2.4:59635076-59635095 None:intergenic 55.0%
!!! GGGATGAAGGGTTTTGGGAG+GGG + chr2.4:59635089-59635108 None:intergenic 55.0%
!!! TGAAGGGTTTTGGGAGGGGA+TGG + chr2.4:59635085-59635104 None:intergenic 55.0%
AAGGGGAGGGGAAGGCTTTG+GGG - chr2.4:59634677-59634696 MS.gene003290:intron 60.0%
AGAAGGGGAGGGGAAGGCTT+TGG - chr2.4:59634675-59634694 MS.gene003290:intron 60.0%
CCCCGTGAGCATAGCTCAGT+TGG + chr2.4:59634913-59634932 None:intergenic 60.0%
CCTAGTTGCTGGAGTTGGGC+AGG - chr2.4:59634554-59634573 MS.gene003290:intron 60.0%
CCTGCCCAACTCCAGCAACT+AGG + chr2.4:59634557-59634576 None:intergenic 60.0%
CTTCCCCACCTTCCTAGACG+AGG + chr2.4:59636140-59636159 None:intergenic 60.0%
GAAGGGGAGGGGAAGGCTTT+GGG - chr2.4:59634676-59634695 MS.gene003290:intron 60.0%
TGACCTTGCCGCATCTGGTG+CGG - chr2.4:59634301-59634320 MS.gene003290:intron 60.0%
!! GCGCACTAGGGAGCATCTTC+AGG - chr2.4:59632813-59632832 MS.gene003290:intron 60.0%
!! TGGGAGGGGATGGCTTTGAG+GGG + chr2.4:59635075-59635094 None:intergenic 60.0%
ACGGGTTCGGAGAGAAGGGG+AGG - chr2.4:59634663-59634682 MS.gene003290:intron 65.0%
CGGGTTCGGAGAGAAGGGGA+GGG - chr2.4:59634664-59634683 MS.gene003290:intron 65.0%
GACCTTGCCGCATCTGGTGC+GGG - chr2.4:59634302-59634321 MS.gene003290:intron 65.0%
GCCGCATCTGGTGCGGGTAA+TGG - chr2.4:59634308-59634327 MS.gene003290:intron 65.0%
GGGTTCGGAGAGAAGGGGAG+GGG - chr2.4:59634665-59634684 MS.gene003290:intron 65.0%
TACCCGCACCAGATGCGGCA+AGG + chr2.4:59634307-59634326 None:intergenic 65.0%
TCGGAGAGAAGGGGAGGGGA+AGG - chr2.4:59634669-59634688 MS.gene003290:intron 65.0%
! AGGGGAGGGGAAGGCTTTGG+GGG - chr2.4:59634678-59634697 MS.gene003290:intron 65.0%
!! AGGGGAAGGCTTTGGGGGGA+TGG - chr2.4:59634683-59634702 MS.gene003290:intron 65.0%
!! GGGGAAGGCTTTGGGGGGAT+GGG - chr2.4:59634684-59634703 MS.gene003290:intron 65.0%
GGTGTCCGGGGTTCGAACCC+CGG - chr2.4:59634859-59634878 MS.gene003290:CDS 70.0%
!! GGGGAGGGGAAGGCTTTGGG+GGG - chr2.4:59634679-59634698 MS.gene003290:intron 70.0%
AGGGGCCGGGGTTCGAACCC+CGG + chr2.4:59634867-59634886 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 59632109 59636214 59632109 ID=MS.gene003290
chr2.4 mRNA 59632109 59636214 59632109 ID=MS.gene003290.t1;Parent=MS.gene003290
chr2.4 exon 59636159 59636214 59636159 ID=MS.gene003290.t1.exon1;Parent=MS.gene003290.t1
chr2.4 CDS 59636159 59636214 59636159 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
chr2.4 exon 59635489 59635828 59635489 ID=MS.gene003290.t1.exon2;Parent=MS.gene003290.t1
chr2.4 CDS 59635489 59635828 59635489 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
chr2.4 exon 59634795 59635019 59634795 ID=MS.gene003290.t1.exon3;Parent=MS.gene003290.t1
chr2.4 CDS 59634795 59635019 59634795 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
chr2.4 exon 59634335 59634563 59634335 ID=MS.gene003290.t1.exon4;Parent=MS.gene003290.t1
chr2.4 CDS 59634335 59634563 59634335 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
chr2.4 exon 59633926 59634104 59633926 ID=MS.gene003290.t1.exon5;Parent=MS.gene003290.t1
chr2.4 CDS 59633926 59634104 59633926 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
chr2.4 exon 59633748 59633813 59633748 ID=MS.gene003290.t1.exon6;Parent=MS.gene003290.t1
chr2.4 CDS 59633748 59633813 59633748 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
chr2.4 exon 59632109 59632189 59632109 ID=MS.gene003290.t1.exon7;Parent=MS.gene003290.t1
chr2.4 CDS 59632109 59632189 59632109 ID=cds.MS.gene003290.t1;Parent=MS.gene003290.t1
Gene Sequence

>MS.gene003290

ATGATAAAGGAGCAGCAAGAGGAGAGTGGTCGCATCAGAAAAGCTATTGCTTCAAGGTTTGATTTTGAATTTGATACATTGTTCATTAACTGCTTGTGTTGTGTTTTGATTTAGAATTTGATTTCAATTCTACCCTTTTTGTTAAATTGCTTGTTTTTGTGTTTTTATTTTGATTTCAATGTGACCCTTTTGGTTTAATTGAATAATTATTGAAACAATGGCTTATTTTGATTTCAATGTAACCCTTTTGGTTTAAATGAATAATTGAAGCAATGGGTTGTTTGACACTTTTGGTTTAATTGAATAATTAAAGCAATGGGTTGTGTTTATTTTGATTTCAATGTGACTCTTTTGGCTAAATTGATTGATTTGGGTGTGTTATTTAGGGTTAAACTGGATGGTCATGGTGGATTTGAAAATTTAGTGAAGCATAAACAATGTGTTACTGCGGTGGCTTTATCTGAGGATGATTCTAAGGGATTTTCAGCTTCGAAAGATGGAAGCATTGTGCAATGGGATGTTGAGAGTGGGAAATGTGAGAGGTATAAGTGGCCCATTGATTCGGTTCTGAAGTCCCATGGCTTGAAGGATCCTCAAGGTTCTGCTACAAAGCAAAGTAGACAGATTTTGACTTTGGCTGCAAGTTCAGATGGTCGCTATTTGGCAACTGGGGGACTTGATCGTCATATTCATATATGGGATACGCGCACTAGGGAGCATCTTCAGGTACTTTTGCCTTTTCATTCTTTGAAACTTTGAAATGAACAACAAGGTTATATAGGGAGCATATTCAAAAATACAATTGTTGGATATTTTTTTGGGGTGGAATAGATTAGTACAGCTCTAGGTGCACTGAGATTGTTTATTGTTTGTATTTACAGATTAAGGGAAATTTATACTCCTTTCCCTTGTTTGGTAACGTTCGTTCTTCGATAAAATTGTCACATAGCTGTTGATATATGTCTTGCTCTATTGATGTGTTTGATATATTTGTTGTGAATTGTGTGTTAAGTTGATTCAAACTGACAAGATGTTATATGTTAACATAAGCGGTTAACTTACCTTAATTTGTATTTAGTAATTCTTGGCATTTGCAAAAGTACAAGCATATTTATGGCCAAATCTGTAGGGTATTGGACTGTTTAGTTGGGACTTGTTATTGTTGGTGTTTGATTTTGTCCATTGTCTTTTACAGGCTTTTCCTGGTCATAGAGGTCCTGTTTCTTCTCTGGCTTTTAGGGAAGGAAGTACCGAGCTATTTTCTGGATCGTTTGATCGAACGATTAAGATATGGAATGTTGAGGACAGAACTTACATGAATACTCTGTTTGGCCACCAAAGTGAAGTATTAAGTATTGATTGTTTACGCAAAGAAAGGGTATTATCTGCTGGCCGTGATCGTAGTATGCAGTTGTTTAAGGTAATCTCACCAAGATGAAGTCTTAAGTATATGGCTTCAAAACCATATTGTATATGTCGGATGTTCTTTACTTTCTCCCACCATTGCTCTGTTTTTGGAAAATTATTAAGTGATTAATTAATAGGAAATTTCTTTCCTATCTTCAAAGGCTGTTTCTTGGGTTATACTTATTTCCATTTCCTCATGAGACTTTTTCTGAATGTTTACTGATGTGTATTCTCTGTAATTTAGGTTCACGAAGAGTCACGTCTTGTATTTCGTGCTCCTGCATCTTCCTTAGAATGCTGTTGTTTTGTTAATAATGAGGAATTCTTGTCTGGTTCGGATGATGGTAGCATTGAGCTTTGGGGTGCAGTACGAAAGAAGCCTATTCATATTTTGAGGAATGCTCATGCTTTACTGACAGATAGCAAGAAATCTGACCAAAAAGATAGTGAAATACTACCCAACGGTAACCTAGGTAAACCTTTAAATACTGTATTGATAGTTCCTTCAGAAATTTACTTCTTATGTGTATTGTATTTTCTTATCCTTTGCTTACTTTTCTCAATATGTGTTCTATTTCCTCAATGATTATATTTTCATTTGCTCCGTAAATATATCTGTCATTTGTGTATTTGTAGTGTGAGTTTAGTTATAGTTAGCATTATGTTAGGATCATAAAGTGATACCATTATCTTCACTATGCAGAAAATGGTCACCACCATCCCGAGAATCACCATTGTTCGTCAGTACACTCTTGGGTCAGTGCAGTGACCGTCTGTAGGAACAGTGACCTTGCCGCATCTGGTGCGGGTAATGGTTTTGTTAGATTATGGACAATTGAAAACGAGACCAAAGACATTAAACCGCTTCATAATGTACCGTTGGTAAGTAGAAGGATAGCAACTAAACTCATTTATTTATTGGATTCATATTCATGCTTGGCTGTAATTGCAGTTGGAAATTTCACTGGCATTTAATAAATCTTTTGTATCACAGGTTGGGTTTGTCAATTCTTTGGCTTTTGCAAAATCAGCAAAATTCCTAGTTGCTGGAGTTGGGCAGGTACTTAAACTTTTAAATTCTGCATGTATTACTCTGTTTTTTCTTCTTTGGTATACATTTTACTTAATTTTCTCTTTGGCTCTGCTTACGGGTTCGGAGAGAAGGGGAGGGGAAGGCTTTGGGGGGATGGGAGTAGAGCGAAAAATAGAGAAATCTTCCATCTTTTTTGAAATAGTGATTTTGTAGAGAATGGTAAATGAATATTAATGATTCAATATATATTTTTTTTTTTGGTCAAGTAGCCTAGTGGCTAGAATTCACCTTTTTCAAGGAGAATAAGTGGGGTGTCCGGGGTTCGAACCCCGGCCCCTGCATATAATAATGCATGTCCCTCCCAACTGAGCTATGCTCACGGGGACAATATATTTTTTATTTTGAGAGTATGATAACATAGATTGGATTTGAAGAAAATATCTAAACCCTCCAAAACCCTTCTACAATACAATTTTTTAGTTTCCCCATTTTGAGGGGATTTTGTATTATGAAGAAAAATAAACCCCTCAAAGCCATCCCCTCCCAAAACCCTTCATCCCTTGCACTTCTTTATTTCTTTTACCCAAAGCTCTCCCTATCCCTTCCCCTCTAAACTTGCAAACAGAGCCTTAAACTCTATTGACAGAAAAGCTAGTGCCTTAAAAATTTATACTTTGGATTATTTTATTTTTTTACCGAACTACTTTAGAAGATAGTTAATTGTTATGGGATTAGTATATGCATATTAATATGGAACTAAATTTTCAGCGATTATGGAATTTTGTGTTCTCTTGCTTTGTTTTCCTAATACTCTTACCCCCTAAAAACTCTATTGCTTTAGAGTGCATTTGATAGAGTGGTTGTCTTACAGACAATTCTCTGTATGTTAGCTTGTGACTGTGAAGCTTCTCTCATGTTAAGTGATTAAAGTGAAGGAATTAATAACATTAAGGGTCTCAGGTCTAGATTTGGCTGCACTCACTCAGTTAGGTTTCAGGTTGACCACCACAATTAAATCCCAAAATGGATATTGCTACAGCGGCTGACGGACCTTTATTAAACTCCATTTAGAAGGCTAATTTCATTTTCTTGACTTCTTTTATATGCCAGTTATACGAAGTAGACTTGTTTTATCGAGTAACTAGTAAATATTGTTTACACTTTTAAATAGATTGCATTCTATTGAATAATTGCAGCTGTTGTTGGTTCAGTGATAACCATTGACGATCAAATTGTTTGACTTTACAAAAAAAAAACATTGACCGTCAACCCTAACTCTTGCTTTTAACCTTAAGCATAGCTGAAGTCAAATGTTGGGAGTGATTTACAGAAAGGATGTTTAGGACTCTCAAGTCTCAACATACAATTTTTGTTTAGATTGAGGATTTATTACAAGTTCATTCATTAGTATATTGTTTTTTAATGGGTATCACGTTCATTAGTTTGTTGTCTGGTATTTGTCCTGAATCAATCATCTCACTTGATTCTTGCAACTTCATATGCAACTAACAGCTTTGCATAAGTGGAACTAACTTTATGTTTTTACTTTTAATACTTTTAACTTTAACAAAATGTCTTTTTACAGGAACCTCGTCTAGGAAGGTGGGGAAGAATACGTGAAGCTCGTAATGGAGTTTCAATTCTTCCACTTAAATTGTCATCATGA

Protein sequence

>MS.gene003290.t1

MIKEQQEESGRIRKAIASRVKLDGHGGFENLVKHKQCVTAVALSEDDSKGFSASKDGSIVQWDVESGKCERYKWPIDSVLKSHGLKDPQGSATKQSRQILTLAASSDGRYLATGGLDRHIHIWDTRTREHLQAFPGHRGPVSSLAFREGSTELFSGSFDRTIKIWNVEDRTYMNTLFGHQSEVLSIDCLRKERVLSAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVNNEEFLSGSDDGSIELWGAVRKKPIHILRNAHALLTDSKKSDQKDSEILPNGNLENGHHHPENHHCSSVHSWVSAVTVCRNSDLAASGAGNGFVRLWTIENETKDIKPLHNVPLVGFVNSLAFAKSAKFLVAGVGQEPRLGRWGRIREARNGVSILPLKLSS