Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88881.t1 | RHN81639.1 | 98.7 | 297 | 4 | 0 | 1 | 297 | 68 | 364 | 3.40E-170 | 607.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88881.t1 | Q9SZ92 | 69.1 | 275 | 84 | 1 | 1 | 275 | 68 | 341 | 3.5e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88881.t1 | A0A396JTL9 | 98.7 | 297 | 4 | 0 | 1 | 297 | 68 | 364 | 2.5e-170 | 607.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene88881 | 0.816864 | 4.44E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene88881 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene04991 | MS.gene88881 | -0.836213 | 1.07E-56 | -1.69E-46 |
| MS.gene050105 | MS.gene88881 | 0.853515 | 2.27E-61 | -1.69E-46 |
| MS.gene050654 | MS.gene88881 | 0.8166 | 5.09E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene88881 | 0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene88881 | 0.892335 | 1.74E-74 | -1.69E-46 |
| MS.gene051541 | MS.gene88881 | 0.840121 | 1.05E-57 | -1.69E-46 |
| MS.gene051655 | MS.gene88881 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene05216 | MS.gene88881 | 0.840776 | 7.09E-58 | -1.69E-46 |
| MS.gene052674 | MS.gene88881 | 0.871471 | 6.66E-67 | -1.69E-46 |
| MS.gene052675 | MS.gene88881 | 0.865788 | 4.58E-65 | -1.69E-46 |
| MS.gene052677 | MS.gene88881 | 0.868158 | 8.04E-66 | -1.69E-46 |
| MS.gene054479 | MS.gene88881 | 0.838153 | 3.40E-57 | -1.69E-46 |
| MS.gene055505 | MS.gene88881 | 0.830924 | 2.23E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene88881 | 0.845854 | 3.13E-59 | -1.69E-46 |
| MS.gene056480 | MS.gene88881 | 0.813535 | 2.44E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene88881 | 0.816005 | 6.91E-52 | -1.69E-46 |
| MS.gene056849 | MS.gene88881 | 0.837419 | 5.26E-57 | -1.69E-46 |
| MS.gene057155 | MS.gene88881 | 0.811045 | 8.52E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene88881 | 0.819332 | 1.23E-52 | -1.69E-46 |
| MS.gene058081 | MS.gene88881 | 0.816758 | 4.69E-52 | -1.69E-46 |
| MS.gene058223 | MS.gene88881 | -0.86764 | 1.18E-65 | -1.69E-46 |
| MS.gene058429 | MS.gene88881 | 0.848983 | 4.33E-60 | -1.69E-46 |
| MS.gene060850 | MS.gene88881 | 0.906953 | 8.54E-81 | -1.69E-46 |
| MS.gene060851 | MS.gene88881 | 0.939128 | 2.14E-99 | -1.69E-46 |
| MS.gene060852 | MS.gene88881 | 0.93687 | 8.68E-98 | -1.69E-46 |
| MS.gene060932 | MS.gene88881 | 0.809536 | 1.80E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene88881 | 0.862011 | 6.85E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88881.t1 | MTR_1g097850 | 93.603 | 297 | 5 | 1 | 1 | 297 | 68 | 350 | 0.0 | 580 |
| MS.gene88881.t1 | MTR_6g039820 | 81.091 | 275 | 52 | 0 | 1 | 275 | 68 | 342 | 1.49e-173 | 483 |
| MS.gene88881.t1 | MTR_3g013430 | 70.758 | 277 | 81 | 0 | 1 | 277 | 178 | 454 | 1.60e-156 | 446 |
| MS.gene88881.t1 | MTR_8g041330 | 66.545 | 275 | 92 | 0 | 1 | 275 | 87 | 361 | 2.65e-145 | 414 |
| MS.gene88881.t1 | MTR_6g040230 | 77.021 | 235 | 52 | 1 | 41 | 275 | 263 | 495 | 1.49e-132 | 385 |
| MS.gene88881.t1 | MTR_1g097850 | 91.327 | 196 | 3 | 1 | 1 | 196 | 68 | 249 | 8.83e-132 | 375 |
| MS.gene88881.t1 | MTR_2g054370 | 34.982 | 283 | 167 | 4 | 1 | 275 | 92 | 365 | 1.45e-48 | 166 |
| MS.gene88881.t1 | MTR_8g041220 | 63.441 | 93 | 33 | 1 | 171 | 263 | 40 | 131 | 3.70e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88881.t1 | AT4G09760 | 69.091 | 275 | 84 | 1 | 1 | 275 | 68 | 341 | 4.38e-148 | 419 |
| MS.gene88881.t1 | AT4G09760 | 69.091 | 275 | 84 | 1 | 1 | 275 | 68 | 341 | 4.38e-148 | 419 |
| MS.gene88881.t1 | AT1G74320 | 66.906 | 278 | 92 | 0 | 1 | 278 | 70 | 347 | 7.50e-147 | 416 |
| MS.gene88881.t1 | AT1G71697 | 65.704 | 277 | 95 | 0 | 1 | 277 | 70 | 346 | 4.42e-142 | 404 |
| MS.gene88881.t1 | AT4G09760 | 67.516 | 157 | 50 | 1 | 1 | 157 | 68 | 223 | 6.65e-76 | 233 |
| MS.gene88881.t1 | AT4G09760 | 66.901 | 142 | 46 | 1 | 1 | 142 | 68 | 208 | 5.46e-67 | 208 |
| MS.gene88881.t1 | AT2G26830 | 35.211 | 284 | 159 | 6 | 1 | 272 | 90 | 360 | 3.52e-51 | 172 |
Find 59 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATATATTCTGGGGCTTA+TGG | 0.170812 | 1.1:-70394004 | MS.gene88881:CDS |
| GTTAAGGAAGCCTACTTTAT+TGG | 0.174086 | 1.1:-70393811 | MS.gene88881:CDS |
| CTTTGGGGAGCACAAACTTT+TGG | 0.221935 | 1.1:+70394740 | None:intergenic |
| CCATATATTCTGGGGCTTAT+GGG | 0.262925 | 1.1:-70394003 | MS.gene88881:CDS |
| GGGCTTATGGGGACTTATTT+CGG | 0.306924 | 1.1:-70393991 | MS.gene88881:intron |
| TACCAGGCATATGAAGCTTA+TGG | 0.312386 | 1.1:+70394900 | None:intergenic |
| CCCATAAGCCCCAGAATATA+TGG | 0.317567 | 1.1:+70394003 | None:intergenic |
| CTCTCGCAAACCATATATTC+TGG | 0.321780 | 1.1:-70394013 | MS.gene88881:CDS |
| TGCCACAATGACCTACAATA+TGG | 0.321926 | 1.1:-70394627 | MS.gene88881:CDS |
| AAGGTTCTGGTTCGTTTATA+TGG | 0.325390 | 1.1:-70397068 | MS.gene88881:CDS |
| AGATGATGAAATAAATATTC+TGG | 0.330658 | 1.1:-70394688 | MS.gene88881:CDS |
| CAGCGAACTGTTCACAGTTT+CGG | 0.335477 | 1.1:+70393764 | None:intergenic |
| AACTGTTCACAGTTTCGGTT+TGG | 0.348089 | 1.1:+70393769 | None:intergenic |
| TGACTCTGAAATATCATCTT+TGG | 0.359929 | 1.1:-70394945 | MS.gene88881:CDS |
| GGCAAATCATTTCTGTGAAA+TGG | 0.366684 | 1.1:-70394429 | MS.gene88881:CDS |
| CTTCTTGCTCGTTTCACTAC+TGG | 0.401801 | 1.1:-70396963 | MS.gene88881:CDS |
| ACTGTTCACAGTTTCGGTTT+GGG | 0.408491 | 1.1:+70393770 | None:intergenic |
| GTACAAAGAAGGCTCATATC+TGG | 0.408997 | 1.1:-70394880 | MS.gene88881:CDS |
| TGTGAAGGATATCAAGAGAT+TGG | 0.415057 | 1.1:-70394654 | MS.gene88881:CDS |
| TTTGCCAGGTCATACGCAAT+AGG | 0.420297 | 1.1:+70394446 | None:intergenic |
| GGTTTCAGCAGTATTGGTTA+AGG | 0.422059 | 1.1:-70393827 | MS.gene88881:CDS |
| TCATAATGTTACCATATTGT+AGG | 0.424013 | 1.1:+70394616 | None:intergenic |
| GGCAGAGGTTTCAGCAGTAT+TGG | 0.426230 | 1.1:-70393833 | MS.gene88881:CDS |
| TGATTCACCTTAGCATTGCT+TGG | 0.458377 | 1.1:+70394062 | None:intergenic |
| TCTCGCAAACCATATATTCT+GGG | 0.466032 | 1.1:-70394012 | MS.gene88881:CDS |
| CATATATTCTGGGGCTTATG+GGG | 0.475167 | 1.1:-70394002 | MS.gene88881:CDS |
| GAACATGAGGTGTATCACTA+TGG | 0.476295 | 1.1:+70394396 | None:intergenic |
| TTCCATAAGCTTCATATGCC+TGG | 0.488274 | 1.1:-70394902 | MS.gene88881:CDS |
| TTTCACAGAAATGATTTGCC+AGG | 0.500589 | 1.1:+70394432 | None:intergenic |
| ACAATATGGTAACATTATGA+TGG | 0.504904 | 1.1:-70394613 | MS.gene88881:CDS |
| CAGAACTCGAGGAGCGTCAA+AGG | 0.515090 | 1.1:-70394236 | MS.gene88881:CDS |
| ATATGAGCCTTCTTTGTACC+AGG | 0.520134 | 1.1:+70394884 | None:intergenic |
| CGTGTCTATCTCAGTTCTGA+AGG | 0.521286 | 1.1:-70394207 | MS.gene88881:intron |
| TGAAATAAATATTCTGGAGA+AGG | 0.522645 | 1.1:-70394682 | MS.gene88881:CDS |
| CTGGTTCGTTTATATGGCGA+AGG | 0.529914 | 1.1:-70397062 | MS.gene88881:CDS |
| GTTGATGAGTCCAATAAAGT+AGG | 0.531218 | 1.1:+70393801 | None:intergenic |
| CTCATATCTGGCAGAGAATG+AGG | 0.535155 | 1.1:-70394868 | MS.gene88881:intron |
| CTTGACTACAGTAAATATCC+TGG | 0.536643 | 1.1:-70394374 | MS.gene88881:intron |
| CTCTGAAATATCATCTTTGG+TGG | 0.538937 | 1.1:-70394942 | MS.gene88881:CDS |
| ACAAAGAATATGCAAGGCAG+AGG | 0.550525 | 1.1:-70393848 | MS.gene88881:CDS |
| CAATCCTATTGCGTATGACC+TGG | 0.557083 | 1.1:-70394450 | MS.gene88881:CDS |
| TTTGAGTGTATCTCAAAGCA+TGG | 0.558795 | 1.1:-70396999 | MS.gene88881:CDS |
| TCATATGCCTGGTACAAAGA+AGG | 0.559823 | 1.1:-70394891 | MS.gene88881:CDS |
| TTGATTACAAAGAATATGCA+AGG | 0.569982 | 1.1:-70393854 | MS.gene88881:CDS |
| CTGGAGAAGGAGTTGTGTGA+AGG | 0.572508 | 1.1:-70394669 | MS.gene88881:CDS |
| AGTTTCGGTTTGGGCAACAA+TGG | 0.574842 | 1.1:+70393779 | None:intergenic |
| CAAGAAACCAAGCAATGCTA+AGG | 0.579970 | 1.1:-70394069 | MS.gene88881:CDS |
| TTTCACTACTGGTAGAGTTG+AGG | 0.595164 | 1.1:-70396952 | MS.gene88881:CDS |
| TACCATATTGTAGGTCATTG+TGG | 0.595534 | 1.1:+70394625 | None:intergenic |
| GTGAAACGAGCAAGAAGGCG+TGG | 0.597624 | 1.1:+70396969 | None:intergenic |
| CAAAAGTTTGTGCTCCCCAA+AGG | 0.603866 | 1.1:-70394739 | MS.gene88881:CDS |
| CAGTAGTGAAACGAGCAAGA+AGG | 0.618606 | 1.1:+70396964 | None:intergenic |
| AAGATGATATTTCAGAGTCA+CGG | 0.624385 | 1.1:+70394948 | None:intergenic |
| TGTATCTCAAAGCATGGACA+AGG | 0.636753 | 1.1:-70396993 | MS.gene88881:CDS |
| CTCGCAAACCATATATTCTG+GGG | 0.653675 | 1.1:-70394011 | MS.gene88881:CDS |
| TAAGGTGAATCAGTTAATGA+CGG | 0.658131 | 1.1:-70394051 | MS.gene88881:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.664678 | 1.1:+70394383 | None:intergenic |
| ATATGATGAACCAGAACTCG+AGG | 0.670863 | 1.1:-70394247 | MS.gene88881:intron |
| AATCACACACATGATGCTAG+TGG | 0.675552 | 1.1:+70393741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTCAATAGAAAATA+AGG | - | chr1.1:70394663-70394682 | MS.gene88881:CDS | 10.0% |
| !! | TAATAGAACTAAATAATTTA+TGG | - | chr1.1:70395570-70395589 | MS.gene88881:intron | 10.0% |
| !!! | ATTGGATTTTTTTATTAAAA+TGG | + | chr1.1:70394091-70394110 | None:intergenic | 10.0% |
| !!! | CATAATTTTTTTAAATCAAA+TGG | + | chr1.1:70395994-70396013 | None:intergenic | 10.0% |
| !!! | TATTTACATTTTTAAGTTTA+AGG | - | chr1.1:70395775-70395794 | MS.gene88881:intron | 10.0% |
| !! | AACTTCTTACTTATAAAATT+AGG | + | chr1.1:70394230-70394249 | None:intergenic | 15.0% |
| !! | ACAAAACAGTAAAATATAAT+TGG | + | chr1.1:70394490-70394509 | None:intergenic | 15.0% |
| !! | ACTTCTTACTTATAAAATTA+GGG | + | chr1.1:70394229-70394248 | None:intergenic | 15.0% |
| !! | ATATCAATAAAAACAAAAAC+AGG | + | chr1.1:70396509-70396528 | None:intergenic | 15.0% |
| !! | ATATTATCTTGCAAATTTAA+GGG | - | chr1.1:70395069-70395088 | MS.gene88881:intron | 15.0% |
| !!! | AATTTTATAAGTAAGAAGTT+AGG | - | chr1.1:70394230-70394249 | MS.gene88881:CDS | 15.0% |
| !!! | TCAAATTTCTTTTTTAAAGA+TGG | + | chr1.1:70395299-70395318 | None:intergenic | 15.0% |
| !!! | TCTTTAAAAAAGAAATTTGA+TGG | - | chr1.1:70395299-70395318 | MS.gene88881:intron | 15.0% |
| !!! | TTCAATTGATTTTAATTCTT+TGG | + | chr1.1:70395712-70395731 | None:intergenic | 15.0% |
| !! | AAAAAAGAAATTTGATGGAA+CGG | - | chr1.1:70395304-70395323 | MS.gene88881:intron | 20.0% |
| !! | AAGATAAAGGGAATAAATTA+AGG | + | chr1.1:70395209-70395228 | None:intergenic | 20.0% |
| !! | AATTTATGTGTCTGTAAAAA+AGG | + | chr1.1:70395610-70395629 | None:intergenic | 20.0% |
| !! | ACTAAACTAAACTAACTTAT+AGG | + | chr1.1:70394696-70394715 | None:intergenic | 20.0% |
| !! | AGAATAAATAACATGAAGAA+AGG | + | chr1.1:70395397-70395416 | None:intergenic | 20.0% |
| !! | AGATAAAGGGAATAAATTAA+GGG | + | chr1.1:70395208-70395227 | None:intergenic | 20.0% |
| !! | AGATGATGAAATAAATATTC+TGG | - | chr1.1:70396120-70396139 | MS.gene88881:intron | 20.0% |
| !! | CATATTATCTTGCAAATTTA+AGG | - | chr1.1:70395068-70395087 | MS.gene88881:intron | 20.0% |
| !! | CTAAATAATTTATGGAACTA+AGG | - | chr1.1:70395578-70395597 | MS.gene88881:intron | 20.0% |
| !! | GCATGTTTCTTTATTATTAT+TGG | + | chr1.1:70395421-70395440 | None:intergenic | 20.0% |
| !! | TAAATGTTCATTAGTAAACT+TGG | - | chr1.1:70395547-70395566 | MS.gene88881:intron | 20.0% |
| !! | TATATAAAGTAGATCAAGAT+CGG | + | chr1.1:70395032-70395051 | None:intergenic | 20.0% |
| !! | TATTCAATAGAAAATAAGGT+AGG | - | chr1.1:70394667-70394686 | MS.gene88881:CDS | 20.0% |
| !!! | AAAATCAATTTTGTTGCAAT+TGG | - | chr1.1:70394411-70394430 | MS.gene88881:CDS | 20.0% |
| !!! | AATTTATTCCCTTTATCTTT+TGG | - | chr1.1:70395210-70395229 | MS.gene88881:intron | 20.0% |
| !!! | CAGAAATATTTCTATCATAT+TGG | + | chr1.1:70394109-70394128 | None:intergenic | 20.0% |
| !!! | TAATTTGTAGAACTAAAAAG+TGG | - | chr1.1:70394036-70394055 | MS.gene88881:CDS | 20.0% |
| !!! | TATAAGTAACTATCATGTTT+TGG | + | chr1.1:70396283-70396302 | None:intergenic | 20.0% |
| !!! | TATTTTCTAAATTTACTTGC+AGG | + | chr1.1:70394621-70394640 | None:intergenic | 20.0% |
| !!! | TGTTGAAATTTTCTTCAATA+GGG | - | chr1.1:70393769-70393788 | MS.gene88881:CDS | 20.0% |
| ! | AAATTTACTTGCAGGAAAAT+TGG | + | chr1.1:70394613-70394632 | None:intergenic | 25.0% |
| ! | ACAATATGGTAACATTATGA+TGG | - | chr1.1:70396195-70396214 | MS.gene88881:intron | 25.0% |
| ! | ATAACATGAAGAAAGGAATA+TGG | + | chr1.1:70395390-70395409 | None:intergenic | 25.0% |
| ! | CAAAGGAAACAAAAAAATTC+GGG | - | chr1.1:70396086-70396105 | MS.gene88881:intron | 25.0% |
| ! | CCAAAGGAAACAAAAAAATT+CGG | - | chr1.1:70396085-70396104 | MS.gene88881:intron | 25.0% |
| ! | CTAAGAACAAAAAATTTACC+AGG | + | chr1.1:70396455-70396474 | None:intergenic | 25.0% |
| ! | GACTATTCTCAATTTGAATT+AGG | + | chr1.1:70394256-70394275 | None:intergenic | 25.0% |
| ! | GCAAGATAATATGTTATGAT+GGG | + | chr1.1:70395061-70395080 | None:intergenic | 25.0% |
| ! | TAACATGAAGAAAGGAATAT+GGG | + | chr1.1:70395389-70395408 | None:intergenic | 25.0% |
| ! | TATGTATGCATAGAATGATA+AGG | - | chr1.1:70395491-70395510 | MS.gene88881:intron | 25.0% |
| ! | TCATAATGTTACCATATTGT+AGG | + | chr1.1:70396195-70396214 | None:intergenic | 25.0% |
| ! | TGATCTCAAAAGCTAAAATA+TGG | + | chr1.1:70395113-70395132 | None:intergenic | 25.0% |
| ! | TGCAAGATAATATGTTATGA+TGG | + | chr1.1:70395062-70395081 | None:intergenic | 25.0% |
| ! | TTGAAGTTTATCATGTACTT+TGG | - | chr1.1:70393969-70393988 | MS.gene88881:intron | 25.0% |
| ! | TTGAATAGAACAAACCAAAT+AGG | + | chr1.1:70394455-70394474 | None:intergenic | 25.0% |
| ! | TTGACATATAAGAACCTATT+TGG | - | chr1.1:70394438-70394457 | MS.gene88881:CDS | 25.0% |
| ! | TTGATTACAAAGAATATGCA+AGG | - | chr1.1:70396954-70396973 | MS.gene88881:CDS | 25.0% |
| !! | GTGTTGAAATTTTCTTCAAT+AGG | - | chr1.1:70393768-70393787 | MS.gene88881:CDS | 25.0% |
| !! | TGAAATAAATATTCTGGAGA+AGG | - | chr1.1:70396126-70396145 | MS.gene88881:intron | 25.0% |
| !!! | CGAATTTTTTTGTTTCCTTT+GGG | + | chr1.1:70396087-70396106 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTGTTTCCTTTG+GGG | + | chr1.1:70396086-70396105 | None:intergenic | 25.0% |
| !!! | TTTTTTGCATCATGAAACTA+TGG | - | chr1.1:70394308-70394327 | MS.gene88881:intron | 25.0% |
| AAGATGATATTTCAGAGTCA+CGG | + | chr1.1:70395863-70395882 | None:intergenic | 30.0% | |
| ACAAAAAGGAACACATTAAC+AGG | + | chr1.1:70395663-70395682 | None:intergenic | 30.0% | |
| AGGAATATGGGAAAAAAGAA+TGG | + | chr1.1:70395377-70395396 | None:intergenic | 30.0% | |
| AGGGAATAAATTAAGGGAAA+AGG | + | chr1.1:70395202-70395221 | None:intergenic | 30.0% | |
| CTGGGTAGGTAATATAATTA+GGG | - | chr1.1:70394145-70394164 | MS.gene88881:intron | 30.0% | |
| GAAAAATTTCTTGCAGTGAA+TGG | - | chr1.1:70394977-70394996 | MS.gene88881:intron | 30.0% | |
| GATAAGAAAATCACATACTC+TGG | + | chr1.1:70393894-70393913 | None:intergenic | 30.0% | |
| TAAGGTGAATCAGTTAATGA+CGG | - | chr1.1:70396757-70396776 | MS.gene88881:intron | 30.0% | |
| TACAAATTAGTATGTCAGCA+AGG | + | chr1.1:70396542-70396561 | None:intergenic | 30.0% | |
| TCACACTAATTGTAAGCTAA+TGG | - | chr1.1:70396236-70396255 | MS.gene88881:intron | 30.0% | |
| TTTGTCTTTCCAATCAGAAT+CGG | - | chr1.1:70394913-70394932 | MS.gene88881:CDS | 30.0% | |
| ! | AGACAAGTTCTTTTATTGGT+AGG | - | chr1.1:70394730-70394749 | MS.gene88881:CDS | 30.0% |
| ! | GAAAGAGTTTTACCAATACA+AGG | - | chr1.1:70395729-70395748 | MS.gene88881:intron | 30.0% |
| ! | GTCAAGACAAGTTCTTTTAT+TGG | - | chr1.1:70394726-70394745 | MS.gene88881:CDS | 30.0% |
| ! | TGTTTTCCATGTGTTTTACT+AGG | - | chr1.1:70396029-70396048 | MS.gene88881:intron | 30.0% |
| !! | TGACTCTGAAATATCATCTT+TGG | - | chr1.1:70395863-70395882 | MS.gene88881:intron | 30.0% |
| !! | TTTGATTGCTTTGAGAAGAT+AGG | - | chr1.1:70394345-70394364 | MS.gene88881:intron | 30.0% |
| !!! | CCGAATTTTTTTGTTTCCTT+TGG | + | chr1.1:70396088-70396107 | None:intergenic | 30.0% |
| !!! | GTAACTATCATGTTTTGGAA+AGG | + | chr1.1:70396278-70396297 | None:intergenic | 30.0% |
| !!! | TGCAGCAAATTATTTTTGCT+GGG | - | chr1.1:70394127-70394146 | MS.gene88881:intron | 30.0% |
| CAAATTCGTCATCCTTGTAT+TGG | + | chr1.1:70395744-70395763 | None:intergenic | 35.0% | |
| CCATTGCTCCAAAAGATAAA+GGG | + | chr1.1:70395221-70395240 | None:intergenic | 35.0% | |
| CGACAGAGTGAAATTCATAA+TGG | + | chr1.1:70396632-70396651 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+TGG | - | chr1.1:70396434-70396453 | MS.gene88881:intron | 35.0% | |
| GACATCAACAACAGACAAAA+AGG | + | chr1.1:70395677-70395696 | None:intergenic | 35.0% | |
| GCTGGGTAGGTAATATAATT+AGG | - | chr1.1:70394144-70394163 | MS.gene88881:intron | 35.0% | |
| GGCAAATCATTTCTGTGAAA+TGG | - | chr1.1:70396379-70396398 | MS.gene88881:intron | 35.0% | |
| GTTAAGGAAGCCTACTTTAT+TGG | - | chr1.1:70396997-70397016 | MS.gene88881:CDS | 35.0% | |
| GTTAATGAGAACACCTATTC+AGG | + | chr1.1:70394953-70394972 | None:intergenic | 35.0% | |
| TAAAGTAGATCAAGATCGGA+CGG | + | chr1.1:70395028-70395047 | None:intergenic | 35.0% | |
| TACAATCACTCTTTGTACAC+AGG | - | chr1.1:70396716-70396735 | MS.gene88881:intron | 35.0% | |
| TACCATATTGTAGGTCATTG+TGG | + | chr1.1:70396186-70396205 | None:intergenic | 35.0% | |
| TACTCCAAAACAACCAAAAG+AGG | + | chr1.1:70395258-70395277 | None:intergenic | 35.0% | |
| TCCATTGCTCCAAAAGATAA+AGG | + | chr1.1:70395222-70395241 | None:intergenic | 35.0% | |
| TCTCGCAAACCATATATTCT+GGG | - | chr1.1:70396796-70396815 | MS.gene88881:intron | 35.0% | |
| TGTGAAGGATATCAAGAGAT+TGG | - | chr1.1:70396154-70396173 | MS.gene88881:intron | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | + | chr1.1:70396428-70396447 | None:intergenic | 35.0% | |
| TTTGAGTGTATCTCAAAGCA+TGG | - | chr1.1:70393809-70393828 | MS.gene88881:CDS | 35.0% | |
| ! | CATGTGTTTTACTAGGAACT+GGG | - | chr1.1:70396036-70396055 | MS.gene88881:intron | 35.0% |
| ! | GAATCCAATTTCCTCTAAGA+GGG | + | chr1.1:70394767-70394786 | None:intergenic | 35.0% |
| ! | GTTGATGAGTCCAATAAAGT+AGG | + | chr1.1:70397010-70397029 | None:intergenic | 35.0% |
| ! | TTTCACAGAAATGATTTGCC+AGG | + | chr1.1:70396379-70396398 | None:intergenic | 35.0% |
| !! | CTCTGAAATATCATCTTTGG+TGG | - | chr1.1:70395866-70395885 | MS.gene88881:intron | 35.0% |
| !! | TTTGCCTCTTTTGGTTGTTT+TGG | - | chr1.1:70395251-70395270 | MS.gene88881:intron | 35.0% |
| !!! | CTGCAGCAAATTATTTTTGC+TGG | - | chr1.1:70394126-70394145 | MS.gene88881:intron | 35.0% |
| !!! | GCAAATTATTTTTGCTGGGT+AGG | - | chr1.1:70394131-70394150 | MS.gene88881:intron | 35.0% |
| !!! | TTATCTTTTGGAGCAATGGA+GGG | - | chr1.1:70395222-70395241 | MS.gene88881:intron | 35.0% |
| !!! | TTTATCTTTTGGAGCAATGG+AGG | - | chr1.1:70395221-70395240 | MS.gene88881:intron | 35.0% |
| AACTGTTCACAGTTTCGGTT+TGG | + | chr1.1:70397042-70397061 | None:intergenic | 40.0% | |
| AAGTCATCGATGTCCTGAAT+AGG | - | chr1.1:70394937-70394956 | MS.gene88881:CDS | 40.0% | |
| ACAAAGAATATGCAAGGCAG+AGG | - | chr1.1:70396960-70396979 | MS.gene88881:CDS | 40.0% | |
| ACTGTTCACAGTTTCGGTTT+GGG | + | chr1.1:70397041-70397060 | None:intergenic | 40.0% | |
| AGTGAATGGAAACACGCATT+CGG | - | chr1.1:70394991-70395010 | MS.gene88881:intron | 40.0% | |
| ATATGAGCCTTCTTTGTACC+AGG | + | chr1.1:70395927-70395946 | None:intergenic | 40.0% | |
| ATATGATGAACCAGAACTCG+AGG | - | chr1.1:70396561-70396580 | MS.gene88881:intron | 40.0% | |
| CAAGAAACCAAGCAATGCTA+AGG | - | chr1.1:70396739-70396758 | MS.gene88881:intron | 40.0% | |
| CAGTTGACAAACTAGTATGC+TGG | + | chr1.1:70395633-70395652 | None:intergenic | 40.0% | |
| CCAGTTCCTAGTAAAACACA+TGG | + | chr1.1:70396038-70396057 | None:intergenic | 40.0% | |
| CTCGCAAACCATATATTCTG+GGG | - | chr1.1:70396797-70396816 | MS.gene88881:intron | 40.0% | |
| CTCTCGCAAACCATATATTC+TGG | - | chr1.1:70396795-70396814 | MS.gene88881:intron | 40.0% | |
| GAACATGAGGTGTATCACTA+TGG | + | chr1.1:70396415-70396434 | None:intergenic | 40.0% | |
| GAATGGAATCATGTGCTCTT+AGG | - | chr1.1:70395340-70395359 | MS.gene88881:intron | 40.0% | |
| GATGACTTTCCGATTCTGAT+TGG | + | chr1.1:70394925-70394944 | None:intergenic | 40.0% | |
| GGAAACAAAAAAATTCGGGC+TGG | - | chr1.1:70396090-70396109 | MS.gene88881:intron | 40.0% | |
| GGAACACACAATACTCATTG+TGG | + | chr1.1:70396488-70396507 | None:intergenic | 40.0% | |
| GGAATCCAATTTCCTCTAAG+AGG | + | chr1.1:70394768-70394787 | None:intergenic | 40.0% | |
| GTACAAAGAAGGCTCATATC+TGG | - | chr1.1:70395928-70395947 | MS.gene88881:intron | 40.0% | |
| TAAGCCCTCTTAGAGGAAAT+TGG | - | chr1.1:70394760-70394779 | MS.gene88881:CDS | 40.0% | |
| TACCAGGCATATGAAGCTTA+TGG | + | chr1.1:70395911-70395930 | None:intergenic | 40.0% | |
| TCATATGCCTGGTACAAAGA+AGG | - | chr1.1:70395917-70395936 | MS.gene88881:intron | 40.0% | |
| TGATTCACCTTAGCATTGCT+TGG | + | chr1.1:70396749-70396768 | None:intergenic | 40.0% | |
| TGCCACAATGACCTACAATA+TGG | - | chr1.1:70396181-70396200 | MS.gene88881:intron | 40.0% | |
| TGTATCTCAAAGCATGGACA+AGG | - | chr1.1:70393815-70393834 | MS.gene88881:CDS | 40.0% | |
| TTACCTATAAGCCCTCTTAG+AGG | - | chr1.1:70394753-70394772 | MS.gene88881:CDS | 40.0% | |
| TTCCATAAGCTTCATATGCC+TGG | - | chr1.1:70395906-70395925 | MS.gene88881:intron | 40.0% | |
| TTTCACTACTGGTAGAGTTG+AGG | - | chr1.1:70393856-70393875 | MS.gene88881:CDS | 40.0% | |
| ! | ACGGTATTGAGTCAATGGAA+TGG | - | chr1.1:70395323-70395342 | MS.gene88881:intron | 40.0% |
| ! | ATGGAACGGTATTGAGTCAA+TGG | - | chr1.1:70395318-70395337 | MS.gene88881:intron | 40.0% |
| ! | CCATGTGTTTTACTAGGAAC+TGG | - | chr1.1:70396035-70396054 | MS.gene88881:intron | 40.0% |
| ! | TGTTTTACTAGGAACTGGGT+TGG | - | chr1.1:70396040-70396059 | MS.gene88881:intron | 40.0% |
| ! | TTTCCTCTAAGAGGGCTTAT+AGG | + | chr1.1:70394759-70394778 | None:intergenic | 40.0% |
| !! | ACCATATATTCTGGGGCTTA+TGG | - | chr1.1:70396804-70396823 | MS.gene88881:intron | 40.0% |
| !! | CATATATTCTGGGGCTTATG+GGG | - | chr1.1:70396806-70396825 | MS.gene88881:intron | 40.0% |
| !! | CCATATATTCTGGGGCTTAT+GGG | - | chr1.1:70396805-70396824 | MS.gene88881:intron | 40.0% |
| !! | GGTTTCAGCAGTATTGGTTA+AGG | - | chr1.1:70396981-70397000 | MS.gene88881:CDS | 40.0% |
| !!! | CCCTTTATCTTTTGGAGCAA+TGG | - | chr1.1:70395218-70395237 | MS.gene88881:intron | 40.0% |
| !!! | CTCGCTTCTTCTCTTGTTTT+TGG | - | chr1.1:70395809-70395828 | MS.gene88881:intron | 40.0% |
| AAATTGGATTCCCGCAGTCA+AGG | - | chr1.1:70394776-70394795 | MS.gene88881:intron | 45.0% | |
| CAAAAGTTTGTGCTCCCCAA+AGG | - | chr1.1:70396069-70396088 | MS.gene88881:intron | 45.0% | |
| CAATCCTATTGCGTATGACC+TGG | - | chr1.1:70396358-70396377 | MS.gene88881:intron | 45.0% | |
| CAGCGAACTGTTCACAGTTT+CGG | + | chr1.1:70397047-70397066 | None:intergenic | 45.0% | |
| CAGTAGTGAAACGAGCAAGA+AGG | + | chr1.1:70393847-70393866 | None:intergenic | 45.0% | |
| CCCATAAGCCCCAGAATATA+TGG | + | chr1.1:70396808-70396827 | None:intergenic | 45.0% | |
| CTCATATCTGGCAGAGAATG+AGG | - | chr1.1:70395940-70395959 | MS.gene88881:intron | 45.0% | |
| CTTCTTGCTCGTTTCACTAC+TGG | - | chr1.1:70393845-70393864 | MS.gene88881:CDS | 45.0% | |
| GGGCTTATGGGGACTTATTT+CGG | - | chr1.1:70396817-70396836 | MS.gene88881:intron | 45.0% | |
| GTGAATGGAAACACGCATTC+GGG | - | chr1.1:70394992-70395011 | MS.gene88881:intron | 45.0% | |
| TGAATGCGTGTATCTCTGCA+GGG | + | chr1.1:70394811-70394830 | None:intergenic | 45.0% | |
| TTGAATGCGTGTATCTCTGC+AGG | + | chr1.1:70394812-70394831 | None:intergenic | 45.0% | |
| TTTGCCAGGTCATACGCAAT+AGG | + | chr1.1:70396365-70396384 | None:intergenic | 45.0% | |
| ! | CGTGTCTATCTCAGTTCTGA+AGG | - | chr1.1:70396601-70396620 | MS.gene88881:intron | 45.0% |
| ! | CTGGTTCGTTTATATGGCGA+AGG | - | chr1.1:70393746-70393765 | MS.gene88881:CDS | 45.0% |
| ! | GGGCTATCATTTGCCTCTTT+TGG | - | chr1.1:70395242-70395261 | MS.gene88881:intron | 45.0% |
| !! | AGTTTCGGTTTGGGCAACAA+TGG | + | chr1.1:70397032-70397051 | None:intergenic | 45.0% |
| !! | CTTTGGGGAGCACAAACTTT+TGG | + | chr1.1:70396071-70396090 | None:intergenic | 45.0% |
| !! | TATAATATAGATATAAAAAA+AGG | + | chr1.1:70393916-70393935 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTATTTTGATAT+AGG | - | chr1.1:70396316-70396335 | MS.gene88881:intron | 5.0% |
| !!! | TTTATATCTATATTATATTT+TGG | - | chr1.1:70393919-70393938 | MS.gene88881:intron | 5.0% |
| ACACGCATTCAAGACATCCG+TGG | - | chr1.1:70394820-70394839 | MS.gene88881:intron | 50.0% | |
| CGATCTTGATCGAACGACCA+CGG | + | chr1.1:70394840-70394859 | None:intergenic | 50.0% | |
| CGTGGTCGTTCGATCAAGAT+CGG | - | chr1.1:70394838-70394857 | MS.gene88881:intron | 50.0% | |
| CTGGAGAAGGAGTTGTGTGA+AGG | - | chr1.1:70396139-70396158 | MS.gene88881:intron | 50.0% | |
| GAATGCGTGTATCTCTGCAG+GGG | + | chr1.1:70394810-70394829 | None:intergenic | 50.0% | |
| GGACGGTCAAGATTCAAGCT+TGG | - | chr1.1:70394859-70394878 | MS.gene88881:intron | 50.0% | |
| GGCAGAGGTTTCAGCAGTAT+TGG | - | chr1.1:70396975-70396994 | MS.gene88881:CDS | 50.0% | |
| GTCGTTCGATCAAGATCGGA+CGG | - | chr1.1:70394842-70394861 | MS.gene88881:intron | 50.0% | |
| CTTTGACGCTCCTCGAGTTC+TGG | + | chr1.1:70396574-70396593 | None:intergenic | 55.0% | |
| GATTCCCGCAGTCAAGGATC+CGG | - | chr1.1:70394782-70394801 | MS.gene88881:intron | 55.0% | |
| GTGAAACGAGCAAGAAGGCG+TGG | + | chr1.1:70393842-70393861 | None:intergenic | 55.0% | |
| !! | CAGAACTCGAGGAGCGTCAA+AGG | - | chr1.1:70396572-70396591 | MS.gene88881:intron | 55.0% |
| GTGTATCTCTGCAGGGGAGC+CGG | + | chr1.1:70394804-70394823 | None:intergenic | 60.0% | |
| GGAGCCGGATCCTTGACTGC+GGG | + | chr1.1:70394789-70394808 | None:intergenic | 65.0% | |
| GGGAGCCGGATCCTTGACTG+CGG | + | chr1.1:70394790-70394809 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 70393743 | 70397087 | 70393743 | ID=MS.gene88881 |
| chr1.1 | mRNA | 70393743 | 70397087 | 70393743 | ID=MS.gene88881.t1;Parent=MS.gene88881 |
| chr1.1 | exon | 70396935 | 70397087 | 70396935 | ID=MS.gene88881.t1.exon1;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70396935 | 70397087 | 70396935 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| chr1.1 | exon | 70394869 | 70394990 | 70394869 | ID=MS.gene88881.t1.exon2;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70394869 | 70394990 | 70394869 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| chr1.1 | exon | 70394584 | 70394779 | 70394584 | ID=MS.gene88881.t1.exon3;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70394584 | 70394779 | 70394584 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| chr1.1 | exon | 70394375 | 70394492 | 70394375 | ID=MS.gene88881.t1.exon4;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70394375 | 70394492 | 70394375 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| chr1.1 | exon | 70394208 | 70394255 | 70394208 | ID=MS.gene88881.t1.exon5;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70394208 | 70394255 | 70394208 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| chr1.1 | exon | 70393992 | 70394092 | 70393992 | ID=MS.gene88881.t1.exon6;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70393992 | 70394092 | 70393992 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| chr1.1 | exon | 70393743 | 70393898 | 70393743 | ID=MS.gene88881.t1.exon7;Parent=MS.gene88881.t1 |
| chr1.1 | CDS | 70393743 | 70393898 | 70393743 | ID=cds.MS.gene88881.t1;Parent=MS.gene88881.t1 |
| Gene Sequence |
| Protein sequence |
