AlfalfaGEDB | MS.gene93095

M. sativa cultivar XinJiangDaYe / MS.gene93095

KEGG: K23179
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93095.t1	XP_013470036.1	98.3	287	4	1	1	286	242	528	1.50E-159	572

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93095.t1	P93149	50.0	284	135	3	1	277	228	511	7.2e-81	302.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93095.t1	A0A072VPX6	98.3	287	4	1	1	286	242	528	1.1e-159	572.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049369	MS.gene93095	0.805558	1.26E-49	-1.69E-46
MS.gene049907	MS.gene93095	0.801368	9.31E-49	-1.69E-46
MS.gene050432	MS.gene93095	0.800906	1.16E-48	-1.69E-46
MS.gene050520	MS.gene93095	0.816217	6.20E-52	-1.69E-46
MS.gene050593	MS.gene93095	0.800456	1.43E-48	-1.69E-46
MS.gene051255	MS.gene93095	0.849327	3.47E-60	-1.69E-46
MS.gene051360	MS.gene93095	0.830898	2.27E-55	-1.69E-46
MS.gene051387	MS.gene93095	0.806809	6.87E-50	-1.69E-46
MS.gene052508	MS.gene93095	0.808997	2.35E-50	-1.69E-46
MS.gene052510	MS.gene93095	0.818617	1.78E-52	-1.69E-46

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93095.t1	MTR_1g107295	98.258	287	4	1	1	286	242	528	0.0	580
MS.gene93095.t1	MTR_4g062510	88.621	290	29	2	1	286	241	530	0.0	511
MS.gene93095.t1	MTR_4g062500	77.163	289	62	2	1	286	239	526	2.15e-162	462
MS.gene93095.t1	MTR_1g107300	99.057	212	2	0	75	286	5	216	3.67e-156	434
MS.gene93095.t1	MTR_7g027960	51.930	285	128	4	1	278	227	509	1.24e-104	314
MS.gene93095.t1	MTR_7g028020	52.113	284	129	3	1	278	227	509	2.13e-104	314
MS.gene93095.t1	MTR_4g088195	47.387	287	135	4	1	277	232	512	3.29e-95	290
MS.gene93095.t1	MTR_8g469300	47.312	279	130	4	5	281	245	508	3.03e-94	287
MS.gene93095.t1	MTR_4g088170	46.367	289	137	4	1	277	232	514	4.43e-93	285
MS.gene93095.t1	MTR_4g088160	45.423	284	139	4	4	277	235	512	2.23e-91	280

Showing 1 to 10 of 367 entries

Previous1 2 3 4 5…37Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93095.t1	AT5G06900	40.942	276	139	4	8	283	247	498	1.05e-72	232
MS.gene93095.t1	AT3G20120	38.078	281	149	4	5	281	115	374	7.12e-71	223
MS.gene93095.t1	AT3G20120	38.078	281	149	4	5	281	115	374	7.12e-71	223
MS.gene93095.t1	AT3G20120	38.078	281	149	4	5	281	115	374	7.12e-71	223
MS.gene93095.t1	AT3G20090	38.811	286	149	5	3	283	113	377	1.85e-70	223
MS.gene93095.t1	AT3G20950	40.569	281	141	6	7	281	257	517	1.74e-69	224
MS.gene93095.t1	AT3G20120	41.393	244	130	2	42	281	276	510	2.26e-69	223
MS.gene93095.t1	AT2G42250	42.915	247	126	2	42	281	276	514	4.77e-69	223
MS.gene93095.t1	AT3G20090	38.811	286	149	5	3	283	251	515	8.50e-69	222
MS.gene93095.t1	AT2G45550	46.414	237	118	5	42	277	279	507	2.27e-68	221

Showing 1 to 10 of 307 entries

Previous1 2 3 4 5…31Next

Find 0 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGAAGAAATGTAAGG+GGG	+	10971:22376-22395	MS.gene93095:intergenic	30.0%
ACACAGTTATAAACCATTGT+TGG	-	10971:21686-21705	MS.gene93095:CDS	30.0%
AGAACTGTTTAACAATCCAA+GGG	-	10971:21806-21825	MS.gene93095:CDS	30.0%
CTATCATAAAAGAGACAATG+AGG	-	10971:21922-21941	MS.gene93095:CDS	30.0%
GAATGTAAGATCTTAGATCA+AGG	-	10971:22266-22285	MS.gene93095:CDS	30.0%
TAAATGCCAGGATTACTTTA+CGG	-	10971:21740-21759	MS.gene93095:CDS	30.0%
TGATAGCATGTATATAAGGA+AGG	+	10971:21908-21927	MS.gene93095:intergenic	30.0%
ATACCGATGATTATGAGGAA+GGG	-	10971:21957-21976	MS.gene93095:CDS	35.0%
ATTCCCTTCCTCATAATCAT+CGG	+	10971:21963-21982	MS.gene93095:intergenic	35.0%
CAAATGGCAACAACTCAAAT+TGG	+	10971:22142-22161	MS.gene93095:intergenic	35.0%

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
10971	gene	21415	22397	21415	ID=MS.gene93095
10971	mRNA	21415	22397	21415	ID=MS.gene93095.t1;Parent=MS.gene93095
10971	exon	22185	22397	22185	ID=MS.gene93095.t1.exon1;Parent=MS.gene93095.t1
10971	CDS	22185	22397	22185	ID=cds.MS.gene93095.t1;Parent=MS.gene93095.t1
10971	exon	21415	22062	21415	ID=MS.gene93095.t1.exon2;Parent=MS.gene93095.t1
10971	CDS	21415	22062	21415	ID=cds.MS.gene93095.t1;Parent=MS.gene93095.t1

Gene Sequence

>MS.gene93095

AGGGCCTTGGACATACACAAAAGGTATGATGCTTTGTTGGATAAGATTATTTCTGATCGTGAAGAACTAAGAAGGGAAGCCAAGCTAATAGATGGTGGTGGTGAGAATGGTGAAGAGAGACTGAAAGATTTTCTTGACATTTTGCTTGATGTCTACAATGAGAAAGACCGTGAAGTCAACTTTACTAGAAATCATATCAAATCATTAATATTGGTACGTATATAACTTCTCCTTATACTTTTTATATAATTATAAAAGTTTTTTTTTTTTGACACAGTTATAAACCATTGTTGGATTATTGTTATTAAATTATTTCTTCAAAAAATAAATGCCAGGATTACTTTACGGCAGCAACCGACACTACTGCAATCTCCGTGGAATGGGCAATATCAGAACTGTTTAACAATCCAAGGGTGCTGAAAAAAGCACAAGAGGAGGTGGATATAGTTACTAGAAAGGAAAGACTTGTGTGTGAAGAAGACGGTCCAAACCTTCCTTATATACATGCTATCATAAAAGAGACAATGAGGCTTCACCCCCCGATACCGATGATTATGAGGAAGGGAATGGAAGATTGTGTGGTTGATGGTAACATGATTCCGAAAGGCTCAATGGTTTGTGTAAACATTTGGGCTATGGCAAGGGACCCAAAGATATGGGAAAACCCATTAGAGTTTAGGCCAGAAAGGTTTTTAGAAAACAAAGATATTGACATGAAAGGGCACCAATTTGAGTTGTTGCCATTTGGTTCTGGAAGGAGAGGTTGTCCTGGTATGCCTTTGGCCCTGCGTCAATTACCCACTGTAATTGGTGCTTTGGTACAATGCTTTGAGTGGAAGATGCTTGATTCGGAATGTAAGATCTTAGATCAAGGTAAAAAAATTGATATGGATGAACGGCCTGGATTGACTGCTCCTAGGGCCAATGATCTTATTTGTATTCCAGTTGCAAGATTGAACCCCCTTACATTTCTTCAACTTTAG

Protein sequence

>MS.gene93095.t1

RALDIHKRYDALLDKIISDREELRREAKLIDGGGENGEERLKDFLDILLDVYNEKDREVNFTRNHIKSLILDYFTAATDTTAISVEWAISELFNNPRVLKKAQEEVDIVTRKERLVCEEDGPNLPYIHAIIKETMRLHPPIPMIMRKGMEDCVVDGNMIPKGSMVCVNIWAMARDPKIWENPLEFRPERFLENKDIDMKGHQFELLPFGSGRRGCPGMPLALRQLPTVIGALVQCFEWKMLDSECKILDQGKKIDMDERPGLTAPRANDLICIPVARLNPLTFLQL