AlfalfaGEDB | MS.gene94906

M. sativa cultivar XinJiangDaYe / MS.gene94906

KEGG: K06268
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF00036.35 PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94906.t1	XP_024627594.1	90.7	237	21	1	1	237	1	236	2.40E-110	408.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94906.t1	O81223	60.0	220	82	1	17	236	3	216	6.8e-69	261.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94906.t1	G8A2Y4	90.7	237	21	1	1	237	1	236	1.8e-110	408.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04919	MS.gene94906	0.805367	1.38E-49	-1.69E-46
MS.gene04920	MS.gene94906	0.810755	9.84E-51	-1.69E-46
MS.gene049254	MS.gene94906	0.812465	4.18E-51	-1.69E-46
MS.gene049283	MS.gene94906	0.82711	1.87E-54	-1.69E-46
MS.gene049499	MS.gene94906	0.805245	1.47E-49	-1.69E-46
MS.gene049825	MS.gene94906	0.819785	9.68E-53	-1.69E-46
MS.gene051699	MS.gene94906	0.828211	1.02E-54	-1.69E-46
MS.gene052533	MS.gene94906	0.813316	2.72E-51	-1.69E-46
MS.gene052586	MS.gene94906	0.807676	4.50E-50	-1.69E-46
MS.gene052685	MS.gene94906	0.814968	1.18E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94906.t1	MTR_8g027620	95.781	237	9	1	1	237	1	236	6.91e-166	460
MS.gene94906.t1	MTR_3g091440	68.020	197	63	0	40	236	17	213	5.40e-95	278
MS.gene94906.t1	MTR_3g091440	65.445	191	66	0	46	236	24	214	5.03e-88	260
MS.gene94906.t1	MTR_8g099575	61.026	195	76	0	40	234	16	210	2.20e-84	250
MS.gene94906.t1	MTR_4g099210	55.897	195	86	0	40	234	16	210	1.55e-77	233
MS.gene94906.t1	MTR_3g060730	53.659	205	93	1	33	235	22	226	7.38e-76	229
MS.gene94906.t1	MTR_1g016430	56.923	195	84	0	38	232	53	247	8.41e-76	229
MS.gene94906.t1	MTR_4g134250	55.208	192	86	0	44	235	36	227	1.75e-75	228
MS.gene94906.t1	MTR_5g096420	55.102	196	88	0	40	235	31	226	3.29e-75	227
MS.gene94906.t1	MTR_1g016430	57.459	181	77	0	52	232	1	181	1.75e-72	219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94906.t1	AT5G24270	60.550	218	80	1	17	234	3	214	4.83e-93	273
MS.gene94906.t1	AT5G24270	60.550	218	80	1	17	234	3	214	4.83e-93	273
MS.gene94906.t1	AT5G24270	60.550	218	80	1	17	234	3	214	4.83e-93	273
MS.gene94906.t1	AT5G24270	63.978	186	67	0	49	234	4	189	3.11e-86	254
MS.gene94906.t1	AT1G64480	59.487	195	79	0	40	234	20	214	2.81e-78	235
MS.gene94906.t1	AT1G64480	59.487	195	79	0	40	234	20	214	2.81e-78	235
MS.gene94906.t1	AT1G64480	59.487	195	79	0	40	234	20	214	2.81e-78	235
MS.gene94906.t1	AT5G24270	63.975	161	58	0	74	234	7	167	8.03e-76	227
MS.gene94906.t1	AT4G17615	54.872	195	88	0	40	234	16	210	3.27e-74	224
MS.gene94906.t1	AT4G17615	54.872	195	88	0	40	234	16	210	3.27e-74	224

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Find 32 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGCAGAAAATATTA+TGG	0.327214	8.1:+74580654	MS.gene94906:CDS
AAACAAACGCAACCTCTTTG+TGG	0.437485	8.1:+74581638	MS.gene94906:CDS
AAACTACGATTGTGATTCTT+CGG	0.429750	8.1:-74582628	None:intergenic
AAATTTACAGTTGAAGGATA+TGG	0.376424	8.1:+74582200	MS.gene94906:intron
AACGCAACCTCTTTGTGGAT+AGG	0.564160	8.1:+74581643	MS.gene94906:CDS
ACGCAACCTCTTTGTGGATA+GGG	0.528181	8.1:+74581644	MS.gene94906:CDS
AGCAGTTACTGTGAGAGAGG+TGG	0.654761	8.1:+74581379	MS.gene94906:intron
AGGTTACATTGAGCGCGAAG+AGG	0.670430	8.1:+74582098	MS.gene94906:CDS
ATGGATGGATCCTGTGAAGT+TGG	0.558937	8.1:+74580673	MS.gene94906:CDS
CACAACGGCCATATAGAGTT+TGG	0.395021	8.1:+74581807	MS.gene94906:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATCACTTCTGCTACAAT+CGG	+	chr8.1:74581235-74581254	MS.gene94906:intron	30.0%
ATTAAAACACACAAGTGGAA+AGG	-	chr8.1:74581300-74581319	None:intergenic	30.0%
CGTTTAGATTATATGACTTG+AGG	+	chr8.1:74582070-74582089	MS.gene94906:CDS	30.0%
GTACACTATTCATATGCAAT+TGG	-	chr8.1:74581331-74581350	None:intergenic	30.0%
GTAGCAGAAAATATTATGGA+TGG	+	chr8.1:74580658-74580677	MS.gene94906:CDS	30.0%
TAAATTCGCCAAACTCTATA+TGG	-	chr8.1:74581818-74581837	None:intergenic	30.0%
TCTATCCTATGAAAAGACTA+CGG	-	chr8.1:74582133-74582152	None:intergenic	30.0%
TGCACAGTTATTGTGAAAAA+TGG	+	chr8.1:74581431-74581450	MS.gene94906:CDS	30.0%
AATCCAAAAAGCCCTTAAGA+TGG	-	chr8.1:74581024-74581043	None:intergenic	35.0%
ACTTGAATCTCTTGTTCGAT+TGG	+	chr8.1:74581499-74581518	MS.gene94906:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	74580637	74582647	74580637	ID=MS.gene94906
chr8.1	mRNA	74580637	74582647	74580637	ID=MS.gene94906.t1;Parent=MS.gene94906
chr8.1	exon	74580637	74580787	74580637	ID=MS.gene94906.t1.exon1;Parent=MS.gene94906.t1
chr8.1	CDS	74580637	74580787	74580637	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74581384	74581466	74581384	ID=MS.gene94906.t1.exon2;Parent=MS.gene94906.t1
chr8.1	CDS	74581384	74581466	74581384	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74581606	74581665	74581606	ID=MS.gene94906.t1.exon3;Parent=MS.gene94906.t1
chr8.1	CDS	74581606	74581665	74581606	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74581783	74581891	74581783	ID=MS.gene94906.t1.exon4;Parent=MS.gene94906.t1
chr8.1	CDS	74581783	74581891	74581783	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74582067	74582119	74582067	ID=MS.gene94906.t1.exon5;Parent=MS.gene94906.t1
chr8.1	CDS	74582067	74582119	74582067	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74582210	74582290	74582210	ID=MS.gene94906.t1.exon6;Parent=MS.gene94906.t1
chr8.1	CDS	74582210	74582290	74582210	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74582384	74582496	74582384	ID=MS.gene94906.t1.exon7;Parent=MS.gene94906.t1
chr8.1	CDS	74582384	74582496	74582384	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1
chr8.1	exon	74582584	74582647	74582584	ID=MS.gene94906.t1.exon8;Parent=MS.gene94906.t1
chr8.1	CDS	74582584	74582647	74582584	ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1

Gene Sequence

>MS.gene94906

ATGGGTTGCAGTAGCTCAAAAGTAGCAGAAAATATTATGGATGGATCCTGTGAAGTTGGCAAAGATAAGAATCTACCTTCAGAAGTAAAAGAAAATGAGCTTAATAATTCTTGTTCTGAAGATTTTTCTATCCTTGCTTCTGAAACACCATGTAAGTAAGAGAGCTTCCTTTTCAAGTTTTTTTTTTTTGCCTTGGAAAGTTAAATTGTCTTGATTAATTAATTAATCTTATAATCTGTAAAATTATAGGTAGATACGTGATTTAGATAATTTCATGGACATAGCAAGAGCAATATACTACTTTGATTTAGTGGTCAAAATCCTCTTTTTTACACTTAATATATTAATTAGTTATTGCTTAAAAAAGGGGTTGCATAGTGCATACCATCTTAAGGGCTTTTTGGATTGACTTCTACACTTGTGAAACTATTTGAGAGAATTTATAGAAACAACTTATGACATGTCCGTGAGCTTTTTAAACTTATTTTCATAAGTTCTACAGGATAGCTTATGAAAACAGATTATGGCTTACATGAAAACAATTTTATTTTATTTTATCTTTTGTTATAGAAATAACTTATACATAAGCACTTATTTGATAATCACTTCTGCTACAATCGGTTAATAAGTTGTTTATCCAAACAGAACCTGAAATTGGTTCCTTTCCACTTGTGTGTTTTAATTTATGCAACCAATTGCATATGAATAGTGTACATTGTTTTGAAGATCTTTTTTTGTACCTAGCAGTTACTGTGAGAGAGGTGGAAATCTTGAAGGAGTTGTACAAAAAATTATGCACAGTTATTGTGAAAAATGGACTTATTCAAAAGGTAGTTTTTTAAATTCGACGTAGTTCAATGAAACTTGAATCTCTTGTTCGATTGGAGAATCAGTATTTTTGTACTTCTTTAGATGCATTTCTTGCAGATAGTTTATAATAATTGATTTGTGTATTGTGTATATTAACAGGAAGAGCTTCACTTTGCTCTTTTTAGAAACAGAAACAAACGCAACCTCTTTGTGGATAGGGTATGCATGTTGATCTAATTTTTTATGTTCTTACACATTCTTAATATGTACTATATGCACATGTTGATTATGAAAATAGCTTTTCAAGTATAATCGTTTGATCTTCTTTCCATGCAGATGTTTGATCTTTTCGATGTCAATCACAACGGCCATATAGAGTTTGGCGAATTTATCAGATCTTTAGGCATCTTTCATCCTAAAGCTCCTCAAGCAGACAAAATAAAATGTAAGAAATATAAGTCATTGTACATAAGCAATTTAGTCTTTTGTTTACCATTCCAGGATGTTGATCGTATATACAATCATAAAAATTAGAACACATCATATTCATTAGCATATTAAATTTCAAATTGATATTGTTAAGTATATGATTACTCACCATGTAAAATTATTCTTCGCAGATGCGTTTAGATTATATGACTTGAGGCATACAGGTTACATTGAGCGCGAAGAGGTAAATACTCCCGTAGTCTTTTCATAGGATAGATTGGTATAATTCTTGTGACAATTGTTTTAATGTTTTGGTTCTAATGAAAATTTACAGTTGAAGGATATGGTGTTGATGATTTTGGTTGAATCTGATTTGGTTCTATCTGATGATGTGGTTGAAACAATTGTGGACAAGGTTTGTTATCATATCAGACTCTAAATAAAATCATCACTTTATAAATTTTATATTGAAAGTTTCTTATATATATATTTTGGGGGGTGTTAACAGACATTTCTAGAAACAGACACGAAAGGTGACGGAAAAATTGACTTAGAAGAATGGAGTGAATATGTTGGAAAGAATCCATCATTACTCAAGAACATGACTCTACCTTATCTAATGTAAGTTTTAAATTTGATTAAATGACACATCCATTCATTGCATTATGACACAGTTGTTTCTAAATCACTTTTTGATTCTAATTTCAGGGACATAACTCTAGCATTTCCCAGTTTTATGCTGAGCGCAGAAACCGAAGAATCACAATCGTAG

Protein sequence

>MS.gene94906.t1

MGCSSSKVAENIMDGSCEVGKDKNLPSEVKENELNNSCSEDFSILASETPFTVREVEILKELYKKLCTVIVKNGLIQKEELHFALFRNRNKRNLFVDRMFDLFDVNHNGHIEFGEFIRSLGIFHPKAPQADKIKYAFRLYDLRHTGYIEREELKDMVLMILVESDLVLSDDVVETIVDKTFLETDTKGDGKIDLEEWSEYVGKNPSLLKNMTLPYLMDITLAFPSFMLSAETEESQS