Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94906.t1 | XP_024627594.1 | 90.7 | 237 | 21 | 1 | 1 | 237 | 1 | 236 | 2.40E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94906.t1 | O81223 | 60.0 | 220 | 82 | 1 | 17 | 236 | 3 | 216 | 6.8e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94906.t1 | G8A2Y4 | 90.7 | 237 | 21 | 1 | 1 | 237 | 1 | 236 | 1.8e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04919 | MS.gene94906 | 0.805367 | 1.38E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene94906 | 0.810755 | 9.84E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene94906 | 0.812465 | 4.18E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene94906 | 0.82711 | 1.87E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene94906 | 0.805245 | 1.47E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene94906 | 0.819785 | 9.68E-53 | -1.69E-46 |
| MS.gene051699 | MS.gene94906 | 0.828211 | 1.02E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene94906 | 0.813316 | 2.72E-51 | -1.69E-46 |
| MS.gene052586 | MS.gene94906 | 0.807676 | 4.50E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene94906 | 0.814968 | 1.18E-51 | -1.69E-46 |
| MS.gene052889 | MS.gene94906 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene94906 | 0.812667 | 3.78E-51 | -1.69E-46 |
| MS.gene053340 | MS.gene94906 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene94906 | 0.805681 | 1.19E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene94906 | 0.845704 | 3.44E-59 | -1.69E-46 |
| MS.gene054222 | MS.gene94906 | 0.836513 | 8.96E-57 | -1.69E-46 |
| MS.gene054957 | MS.gene94906 | 0.806338 | 8.64E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene94906 | 0.818879 | 1.56E-52 | -1.69E-46 |
| MS.gene056068 | MS.gene94906 | 0.815084 | 1.11E-51 | -1.69E-46 |
| MS.gene056091 | MS.gene94906 | 0.804955 | 1.68E-49 | -1.69E-46 |
| MS.gene05636 | MS.gene94906 | 0.825441 | 4.68E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene94906 | 0.832502 | 9.11E-56 | -1.69E-46 |
| MS.gene05659 | MS.gene94906 | 0.802504 | 5.44E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene94906 | 0.825663 | 4.15E-54 | -1.69E-46 |
| MS.gene05689 | MS.gene94906 | 0.822789 | 1.96E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene94906 | 0.8091 | 2.24E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene94906 | 0.841124 | 5.75E-58 | -1.69E-46 |
| MS.gene057893 | MS.gene94906 | -0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene94906 | 0.830311 | 3.15E-55 | -1.69E-46 |
| MS.gene058498 | MS.gene94906 | 0.807169 | 5.76E-50 | -1.69E-46 |
| MS.gene058500 | MS.gene94906 | 0.803954 | 2.72E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene94906 | 0.822633 | 2.13E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene94906 | -0.849714 | 2.71E-60 | -1.69E-46 |
| MS.gene059901 | MS.gene94906 | -0.819563 | 1.09E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene94906 | 0.824131 | 9.53E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene94906 | 0.811691 | 6.17E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene94906 | 0.820455 | 6.80E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene94906 | 0.811301 | 7.50E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene94906 | 0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene94906 | 0.821547 | 3.81E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94906.t1 | MTR_8g027620 | 95.781 | 237 | 9 | 1 | 1 | 237 | 1 | 236 | 6.91e-166 | 460 |
| MS.gene94906.t1 | MTR_3g091440 | 68.020 | 197 | 63 | 0 | 40 | 236 | 17 | 213 | 5.40e-95 | 278 |
| MS.gene94906.t1 | MTR_3g091440 | 65.445 | 191 | 66 | 0 | 46 | 236 | 24 | 214 | 5.03e-88 | 260 |
| MS.gene94906.t1 | MTR_8g099575 | 61.026 | 195 | 76 | 0 | 40 | 234 | 16 | 210 | 2.20e-84 | 250 |
| MS.gene94906.t1 | MTR_4g099210 | 55.897 | 195 | 86 | 0 | 40 | 234 | 16 | 210 | 1.55e-77 | 233 |
| MS.gene94906.t1 | MTR_3g060730 | 53.659 | 205 | 93 | 1 | 33 | 235 | 22 | 226 | 7.38e-76 | 229 |
| MS.gene94906.t1 | MTR_1g016430 | 56.923 | 195 | 84 | 0 | 38 | 232 | 53 | 247 | 8.41e-76 | 229 |
| MS.gene94906.t1 | MTR_4g134250 | 55.208 | 192 | 86 | 0 | 44 | 235 | 36 | 227 | 1.75e-75 | 228 |
| MS.gene94906.t1 | MTR_5g096420 | 55.102 | 196 | 88 | 0 | 40 | 235 | 31 | 226 | 3.29e-75 | 227 |
| MS.gene94906.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 52 | 232 | 1 | 181 | 1.75e-72 | 219 |
| MS.gene94906.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 52 | 235 | 5 | 188 | 3.26e-72 | 218 |
| MS.gene94906.t1 | MTR_8g099570 | 50.505 | 198 | 98 | 0 | 40 | 237 | 58 | 255 | 1.62e-71 | 219 |
| MS.gene94906.t1 | MTR_2g027500 | 46.383 | 235 | 115 | 2 | 1 | 235 | 1 | 224 | 2.30e-71 | 218 |
| MS.gene94906.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 52 | 232 | 99 | 279 | 1.13e-70 | 218 |
| MS.gene94906.t1 | MTR_2g027440 | 52.688 | 186 | 88 | 0 | 49 | 234 | 43 | 228 | 6.04e-66 | 204 |
| MS.gene94906.t1 | MTR_3g091440 | 70.213 | 141 | 42 | 0 | 40 | 180 | 17 | 157 | 5.50e-65 | 199 |
| MS.gene94906.t1 | MTR_2g027480 | 52.151 | 186 | 89 | 0 | 49 | 234 | 43 | 228 | 2.01e-64 | 200 |
| MS.gene94906.t1 | MTR_2g027520 | 48.705 | 193 | 99 | 0 | 45 | 237 | 41 | 233 | 1.27e-62 | 196 |
| MS.gene94906.t1 | MTR_8g016170 | 52.151 | 186 | 89 | 0 | 45 | 230 | 66 | 251 | 3.54e-61 | 192 |
| MS.gene94906.t1 | MTR_5g013560 | 48.205 | 195 | 90 | 1 | 40 | 234 | 15 | 198 | 2.66e-59 | 186 |
| MS.gene94906.t1 | MTR_8g016170 | 53.488 | 172 | 80 | 0 | 45 | 216 | 47 | 218 | 1.21e-57 | 182 |
| MS.gene94906.t1 | MTR_4g113505 | 44.624 | 186 | 103 | 0 | 51 | 236 | 6 | 191 | 8.93e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94906.t1 | AT5G24270 | 60.550 | 218 | 80 | 1 | 17 | 234 | 3 | 214 | 4.83e-93 | 273 |
| MS.gene94906.t1 | AT5G24270 | 60.550 | 218 | 80 | 1 | 17 | 234 | 3 | 214 | 4.83e-93 | 273 |
| MS.gene94906.t1 | AT5G24270 | 60.550 | 218 | 80 | 1 | 17 | 234 | 3 | 214 | 4.83e-93 | 273 |
| MS.gene94906.t1 | AT5G24270 | 63.978 | 186 | 67 | 0 | 49 | 234 | 4 | 189 | 3.11e-86 | 254 |
| MS.gene94906.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 40 | 234 | 20 | 214 | 2.81e-78 | 235 |
| MS.gene94906.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 40 | 234 | 20 | 214 | 2.81e-78 | 235 |
| MS.gene94906.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 40 | 234 | 20 | 214 | 2.81e-78 | 235 |
| MS.gene94906.t1 | AT5G24270 | 63.975 | 161 | 58 | 0 | 74 | 234 | 7 | 167 | 8.03e-76 | 227 |
| MS.gene94906.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 40 | 234 | 16 | 210 | 3.27e-74 | 224 |
| MS.gene94906.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 40 | 234 | 16 | 210 | 3.27e-74 | 224 |
| MS.gene94906.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 40 | 234 | 16 | 210 | 3.27e-74 | 224 |
| MS.gene94906.t1 | AT5G47100 | 55.789 | 190 | 84 | 0 | 45 | 234 | 21 | 210 | 5.34e-74 | 224 |
| MS.gene94906.t1 | AT4G33000 | 57.216 | 194 | 83 | 0 | 41 | 234 | 53 | 246 | 6.90e-74 | 225 |
| MS.gene94906.t1 | AT4G26570 | 53.846 | 195 | 90 | 0 | 41 | 235 | 32 | 226 | 7.06e-74 | 224 |
| MS.gene94906.t1 | AT4G33000 | 57.216 | 194 | 83 | 0 | 41 | 234 | 63 | 256 | 1.39e-73 | 224 |
| MS.gene94906.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 41 | 235 | 32 | 226 | 1.90e-72 | 220 |
| MS.gene94906.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 41 | 235 | 32 | 226 | 1.90e-72 | 220 |
| MS.gene94906.t1 | AT4G26570 | 52.764 | 199 | 90 | 1 | 41 | 235 | 32 | 230 | 9.83e-72 | 219 |
| MS.gene94906.t1 | AT1G64480 | 59.887 | 177 | 71 | 0 | 40 | 216 | 20 | 196 | 4.07e-70 | 213 |
| MS.gene94906.t1 | AT4G17615 | 55.249 | 181 | 81 | 0 | 40 | 220 | 16 | 196 | 8.25e-67 | 207 |
| MS.gene94906.t1 | AT4G01420 | 47.739 | 199 | 104 | 0 | 29 | 227 | 4 | 202 | 5.83e-62 | 193 |
| MS.gene94906.t1 | AT4G16350 | 50.259 | 193 | 92 | 1 | 45 | 237 | 34 | 222 | 5.60e-61 | 191 |
| MS.gene94906.t1 | AT4G16350 | 50.259 | 193 | 92 | 1 | 45 | 237 | 34 | 222 | 5.60e-61 | 191 |
| MS.gene94906.t1 | AT4G17615 | 54.777 | 157 | 71 | 0 | 78 | 234 | 12 | 168 | 6.65e-61 | 189 |
| MS.gene94906.t1 | AT4G01420 | 47.872 | 188 | 98 | 0 | 29 | 216 | 4 | 191 | 3.38e-58 | 183 |
| MS.gene94906.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 59 | 235 | 25 | 214 | 1.43e-55 | 177 |
| MS.gene94906.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 45 | 182 | 21 | 158 | 7.19e-49 | 158 |
| MS.gene94906.t1 | AT4G33000 | 54.861 | 144 | 65 | 0 | 41 | 184 | 53 | 196 | 3.34e-47 | 155 |
| MS.gene94906.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 41 | 180 | 53 | 192 | 4.00e-47 | 155 |
| MS.gene94906.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 41 | 180 | 53 | 192 | 4.00e-47 | 155 |
| MS.gene94906.t1 | AT4G33000 | 54.348 | 92 | 42 | 0 | 41 | 132 | 53 | 144 | 1.19e-24 | 95.9 |
Find 32 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.1:-74581861 | None:intergenic |
| GGATATGGTGTTGATGATTT+TGG | 0.239699 | 8.1:+74582215 | MS.gene94906:CDS |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8.1:+74580654 | MS.gene94906:CDS |
| TTCTGCGCTCAGCATAAAAC+TGG | 0.328781 | 8.1:-74582604 | None:intergenic |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.1:-74581815 | None:intergenic |
| GGCGAATTTATCAGATCTTT+AGG | 0.334304 | 8.1:+74581828 | MS.gene94906:CDS |
| AAATTTACAGTTGAAGGATA+TGG | 0.376424 | 8.1:+74582200 | MS.gene94906:intron |
| CACAACGGCCATATAGAGTT+TGG | 0.395021 | 8.1:+74581807 | MS.gene94906:CDS |
| AAACTACGATTGTGATTCTT+CGG | 0.429750 | 8.1:-74582628 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.1:-74582459 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | 8.1:+74581638 | MS.gene94906:CDS |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.1:-74580683 | None:intergenic |
| TTATATGACTTGAGGCATAC+AGG | 0.464058 | 8.1:+74582078 | MS.gene94906:CDS |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8.1:-74582486 | None:intergenic |
| GAAGAATGGAGTGAATATGT+TGG | 0.482908 | 8.1:+74582429 | MS.gene94906:CDS |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.1:+74581391 | MS.gene94906:CDS |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | 8.1:+74581644 | MS.gene94906:CDS |
| TACATGGTGTTTCAGAAGCA+AGG | 0.531935 | 8.1:-74580768 | None:intergenic |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.1:+74580658 | MS.gene94906:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.1:+74580673 | MS.gene94906:CDS |
| CGTTTAGATTATATGACTTG+AGG | 0.559102 | 8.1:+74582070 | MS.gene94906:CDS |
| TTTGGTTCTATCTGATGATG+TGG | 0.562282 | 8.1:+74582248 | MS.gene94906:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | 8.1:+74581643 | MS.gene94906:CDS |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.1:+74581376 | MS.gene94906:intron |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.1:+74582269 | MS.gene94906:CDS |
| GAAACAGACACGAAAGGTGA+CGG | 0.615254 | 8.1:+74582393 | MS.gene94906:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.624228 | 8.1:-74581650 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.1:+74582263 | MS.gene94906:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.1:+74581379 | MS.gene94906:intron |
| TCTGCGCTCAGCATAAAACT+GGG | 0.668163 | 8.1:-74582603 | None:intergenic |
| TTTCTAGAAACAGACACGAA+AGG | 0.669410 | 8.1:+74582387 | MS.gene94906:CDS |
| AGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.1:+74582098 | MS.gene94906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTCTTATATATATATTT+TGG | + | chr8.1:74582348-74582367 | MS.gene94906:intron | 10.0% |
| !!! | GTTTCTTATATATATATTTT+GGG | + | chr8.1:74582349-74582368 | MS.gene94906:intron | 10.0% |
| !!! | TTTCTTATATATATATTTTG+GGG | + | chr8.1:74582350-74582369 | MS.gene94906:intron | 10.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.1:74580982-74581001 | MS.gene94906:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8.1:74580961-74580980 | None:intergenic | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.1:74580983-74581002 | MS.gene94906:intron | 15.0% |
| !! | CAAAAAAAAAAAACTTGAAA+AGG | - | chr8.1:74580807-74580826 | None:intergenic | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | + | chr8.1:74580864-74580883 | MS.gene94906:intron | 15.0% |
| !!! | TTCTTATATATATATTTTGG+GGG | + | chr8.1:74582351-74582370 | MS.gene94906:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | - | chr8.1:74582489-74582508 | None:intergenic | 15.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8.1:74580654-74580673 | MS.gene94906:CDS | 20.0% |
| !! | AAATAAGTTTAAAAAGCTCA+CGG | - | chr8.1:74581104-74581123 | None:intergenic | 20.0% |
| !! | TAATGAAAATTTACAGTTGA+AGG | + | chr8.1:74582194-74582213 | MS.gene94906:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.1:74580984-74581003 | MS.gene94906:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | + | chr8.1:74580928-74580947 | MS.gene94906:intron | 20.0% |
| !!! | ACTTTTTGATTCTAATTTCA+GGG | + | chr8.1:74582563-74582582 | MS.gene94906:intron | 20.0% |
| !!! | TCTTATATATATATTTTGGG+GGG | + | chr8.1:74582352-74582371 | MS.gene94906:intron | 20.0% |
| !!! | TGACAATTGTTTTAATGTTT+TGG | + | chr8.1:74582168-74582187 | MS.gene94906:intron | 20.0% |
| ! | AAATTTACAGTTGAAGGATA+TGG | + | chr8.1:74582200-74582219 | MS.gene94906:intron | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | + | chr8.1:74580892-74580911 | MS.gene94906:intron | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | - | chr8.1:74581305-74581324 | None:intergenic | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | + | chr8.1:74581141-74581160 | MS.gene94906:intron | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.1:74581584-74581603 | MS.gene94906:intron | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.1:74581445-74581464 | MS.gene94906:CDS | 25.0% |
| !! | GAAAAATTGACTTAGAAGAA+TGG | + | chr8.1:74582415-74582434 | MS.gene94906:CDS | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.1:74580715-74580734 | None:intergenic | 25.0% |
| !!! | CAAGTTTTTTTTTTTTGCCT+TGG | + | chr8.1:74580810-74580829 | MS.gene94906:intron | 25.0% |
| !!! | CACTTTTTGATTCTAATTTC+AGG | + | chr8.1:74582562-74582581 | MS.gene94906:intron | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | + | chr8.1:74581117-74581136 | MS.gene94906:intron | 25.0% |
| ATAATCACTTCTGCTACAAT+CGG | + | chr8.1:74581235-74581254 | MS.gene94906:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | - | chr8.1:74581300-74581319 | None:intergenic | 30.0% | |
| CGTTTAGATTATATGACTTG+AGG | + | chr8.1:74582070-74582089 | MS.gene94906:CDS | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | - | chr8.1:74581331-74581350 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8.1:74580658-74580677 | MS.gene94906:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.1:74581818-74581837 | None:intergenic | 30.0% | |
| TCTATCCTATGAAAAGACTA+CGG | - | chr8.1:74582133-74582152 | None:intergenic | 30.0% | |
| TGCACAGTTATTGTGAAAAA+TGG | + | chr8.1:74581431-74581450 | MS.gene94906:CDS | 30.0% | |
| ! | AGTCTTTTCATAGGATAGAT+TGG | + | chr8.1:74582134-74582153 | MS.gene94906:intron | 30.0% |
| ! | CAAGACAATTTAACTTTCCA+AGG | - | chr8.1:74580830-74580849 | None:intergenic | 30.0% |
| ! | CTGCGAAGAATAATTTTACA+TGG | - | chr8.1:74582047-74582066 | None:intergenic | 30.0% |
| !!! | CATTTTATTTTGTCTGCTTG+AGG | - | chr8.1:74581873-74581892 | None:intergenic | 30.0% |
| !!! | GATTTTGGTTGAATCTGATT+TGG | + | chr8.1:74582230-74582249 | MS.gene94906:CDS | 30.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.1:74581024-74581043 | None:intergenic | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.1:74581499-74581518 | MS.gene94906:intron | 35.0% | |
| ATCCAAACAGAACCTGAAAT+TGG | + | chr8.1:74581272-74581291 | MS.gene94906:intron | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | + | chr8.1:74581010-74581029 | MS.gene94906:intron | 35.0% | |
| CTATCCTATGAAAAGACTAC+GGG | - | chr8.1:74582132-74582151 | None:intergenic | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.1:74582530-74582549 | None:intergenic | 35.0% | |
| GAAAAGATCAAACATCTGCA+TGG | - | chr8.1:74581778-74581797 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.1:74582429-74582448 | MS.gene94906:CDS | 35.0% | |
| GGCGAATTTATCAGATCTTT+AGG | + | chr8.1:74581828-74581847 | MS.gene94906:CDS | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.1:74582462-74582481 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.1:74582263-74582282 | MS.gene94906:CDS | 35.0% | |
| TGTATATACGATCAACATCC+TGG | - | chr8.1:74581947-74581966 | None:intergenic | 35.0% | |
| TTATATGACTTGAGGCATAC+AGG | + | chr8.1:74582078-74582097 | MS.gene94906:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.1:74581018-74581037 | MS.gene94906:intron | 35.0% |
| ! | CTTTTCGATGTCAATCACAA+CGG | + | chr8.1:74581792-74581811 | MS.gene94906:CDS | 35.0% |
| ! | TTTCTAGAAACAGACACGAA+AGG | + | chr8.1:74582387-74582406 | MS.gene94906:CDS | 35.0% |
| !! | AACCAATTTCAGGTTCTGTT+TGG | - | chr8.1:74581277-74581296 | None:intergenic | 35.0% |
| !! | AGTCTTTTGTTTACCATTCC+AGG | + | chr8.1:74581926-74581945 | MS.gene94906:intron | 35.0% |
| !! | TTTGGTTCTATCTGATGATG+TGG | + | chr8.1:74582248-74582267 | MS.gene94906:CDS | 35.0% |
| !!! | GGATATGGTGTTGATGATTT+TGG | + | chr8.1:74582215-74582234 | MS.gene94906:CDS | 35.0% |
| AAACAAACGCAACCTCTTTG+TGG | + | chr8.1:74581638-74581657 | MS.gene94906:CDS | 40.0% | |
| AGGAAGCTCTCTTACTTACA+TGG | - | chr8.1:74580787-74580806 | None:intergenic | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | - | chr8.1:74581287-74581306 | None:intergenic | 40.0% | |
| ATACGATCAACATCCTGGAA+TGG | - | chr8.1:74581942-74581961 | None:intergenic | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.1:74580686-74580705 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | + | chr8.1:74581009-74581028 | MS.gene94906:intron | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.1:74582269-74582288 | MS.gene94906:CDS | 40.0% | |
| TACATGGTGTTTCAGAAGCA+AGG | - | chr8.1:74580771-74580790 | None:intergenic | 40.0% | |
| ! | TACTCCCGTAGTCTTTTCAT+AGG | + | chr8.1:74582125-74582144 | MS.gene94906:intron | 40.0% |
| AACGCAACCTCTTTGTGGAT+AGG | + | chr8.1:74581643-74581662 | MS.gene94906:CDS | 45.0% | |
| ACGCAACCTCTTTGTGGATA+GGG | + | chr8.1:74581644-74581663 | MS.gene94906:CDS | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.1:74580673-74580692 | MS.gene94906:CDS | 45.0% | |
| CACAACGGCCATATAGAGTT+TGG | + | chr8.1:74581807-74581826 | MS.gene94906:CDS | 45.0% | |
| GAAACAGACACGAAAGGTGA+CGG | + | chr8.1:74582393-74582412 | MS.gene94906:CDS | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.1:74581391-74581410 | MS.gene94906:CDS | 45.0% | |
| TCTGCGCTCAGCATAAAACT+GGG | - | chr8.1:74582606-74582625 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.1:74581653-74581672 | None:intergenic | 45.0% | |
| TTCTGCGCTCAGCATAAAAC+TGG | - | chr8.1:74582607-74582626 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.1:74581864-74581883 | None:intergenic | 45.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.1:74581379-74581398 | MS.gene94906:intron | 50.0% | |
| AGGTTACATTGAGCGCGAAG+AGG | + | chr8.1:74582098-74582117 | MS.gene94906:CDS | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.1:74581376-74581395 | MS.gene94906:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.1:74581379-74581398 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 74580637 | 74582647 | 74580637 | ID=MS.gene94906 |
| chr8.1 | mRNA | 74580637 | 74582647 | 74580637 | ID=MS.gene94906.t1;Parent=MS.gene94906 |
| chr8.1 | exon | 74580637 | 74580787 | 74580637 | ID=MS.gene94906.t1.exon1;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74580637 | 74580787 | 74580637 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74581384 | 74581466 | 74581384 | ID=MS.gene94906.t1.exon2;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74581384 | 74581466 | 74581384 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74581606 | 74581665 | 74581606 | ID=MS.gene94906.t1.exon3;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74581606 | 74581665 | 74581606 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74581783 | 74581891 | 74581783 | ID=MS.gene94906.t1.exon4;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74581783 | 74581891 | 74581783 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74582067 | 74582119 | 74582067 | ID=MS.gene94906.t1.exon5;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74582067 | 74582119 | 74582067 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74582210 | 74582290 | 74582210 | ID=MS.gene94906.t1.exon6;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74582210 | 74582290 | 74582210 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74582384 | 74582496 | 74582384 | ID=MS.gene94906.t1.exon7;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74582384 | 74582496 | 74582384 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| chr8.1 | exon | 74582584 | 74582647 | 74582584 | ID=MS.gene94906.t1.exon8;Parent=MS.gene94906.t1 |
| chr8.1 | CDS | 74582584 | 74582647 | 74582584 | ID=cds.MS.gene94906.t1;Parent=MS.gene94906.t1 |
| Gene Sequence |
| Protein sequence |
