AlfalfaGEDB | MS.gene96799

M. sativa cultivar XinJiangDaYe / MS.gene96799

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96799.t1	XP_024638446.1	97.4	114	3	0	1	114	1	114	2.90E-53	217.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96799.t1	A0A072UP09	97.4	114	3	0	1	114	1	114	2.1e-53	217.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene96799	0.800451	1.43E-48	-1.69E-46
MS.gene049378	MS.gene96799	0.805776	1.13E-49	-1.69E-46
MS.gene049424	MS.gene96799	0.822781	1.97E-53	-1.69E-46
MS.gene050226	MS.gene96799	0.819689	1.02E-52	-1.69E-46
MS.gene050227	MS.gene96799	0.814402	1.57E-51	-1.69E-46
MS.gene050228	MS.gene96799	0.814121	1.81E-51	-1.69E-46
MS.gene050442	MS.gene96799	0.800481	1.41E-48	-1.69E-46
MS.gene050987	MS.gene96799	0.83349	5.18E-56	-1.69E-46
MS.gene051983	MS.gene96799	0.80981	1.57E-50	-1.69E-46
MS.gene052176	MS.gene96799	0.805818	1.11E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96799.t1	MTR_4g081550	97.368	114	3	0	1	114	1	114	6.57e-78	232

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 47 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACGGTTACGTATCCTG+CGG	0.727599	4.3:+28541005	MS.gene96799:CDS
ACCGCGCCTCATCGCCGACG+AGG	0.591542	4.3:+28541046	MS.gene96799:CDS
ACCTCTCCAAACACCATTCT+CGG	0.512931	4.3:-28541192	None:intergenic
ACTGATTGGATAATGGGCGG+TGG	0.623434	4.3:+28540919	None:intergenic
AGGACGGCAGCCAAGCTCGC+CGG	0.539761	4.3:+28540952	MS.gene96799:CDS
AGGCTTCACGTCCGCGGTTT+TGG	0.226260	4.3:-28541085	None:intergenic
AGTGATTTGTTTATGTCGAG+TGG	0.551557	4.3:+28541159	MS.gene96799:CDS
ATCTCAGGGGACCAAAACCG+CGG	0.669256	4.3:+28541074	MS.gene96799:CDS
CATAAACAAATCACTTTCAT+CGG	0.525463	4.3:-28541151	None:intergenic
CCAAACACCATTCTCGGCGT+AGG	0.600029	4.3:-28541186	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCGGAGGATTTGAATGACT+GGG	+	chr4.3:28541122-28541141	MS.gene96799:CDS	40.0%
TTTCGGAGGATTTGAATGAC+TGG	+	chr4.3:28541121-28541140	MS.gene96799:CDS	40.0%
ACCTCTCCAAACACCATTCT+CGG	-	chr4.3:28541195-28541214	None:intergenic	45.0%
AACCACGGTTACGTATCCTG+CGG	+	chr4.3:28541005-28541024	MS.gene96799:CDS	50.0%
CCCTGAGATAAAACCCTCGT+CGG	-	chr4.3:28541063-28541082	None:intergenic	50.0%
ATCTCAGGGGACCAAAACCG+CGG	+	chr4.3:28541074-28541093	MS.gene96799:CDS	55.0%
CCAAACACCATTCTCGGCGT+AGG	-	chr4.3:28541189-28541208	None:intergenic	55.0%
CCTACGCCGAGAATGGTGTT+TGG	+	chr4.3:28541186-28541205	MS.gene96799:CDS	55.0%
CGTATCCTGCGGAGAAACAG+TGG	+	chr4.3:28541016-28541035	MS.gene96799:CDS	55.0%
CTGCGGAGAAACAGTGGTCT+CGG	+	chr4.3:28541022-28541041	MS.gene96799:CDS	55.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	28540931	28541275	28540931	ID=MS.gene96799
chr4.3	mRNA	28540931	28541275	28540931	ID=MS.gene96799.t1;Parent=MS.gene96799
chr4.3	exon	28540931	28541275	28540931	ID=MS.gene96799.t1.exon1;Parent=MS.gene96799.t1
chr4.3	CDS	28540931	28541275	28540931	ID=cds.MS.gene96799.t1;Parent=MS.gene96799.t1

Gene Sequence	>MS.gene96799 ATGGGCGGTGGCGGAACGATGAGGACGGCAGCCAAGCTCGCCGGCATCGGCGTCGCTAGGTCAGGCTTCAGGGGAACCACGGTTACGTATCCTGCGGAGAAACAGTGGTCTCGGAACCGCGCCTCATCGCCGACGAGGGTTTTATCTCAGGGGACCAAAACCGCGGACGTGAAGCCTCTGCACACGTCGGTTTCGGAGGATTTGAATGACTGGGAATTCGCCGATGAAAGTGATTTGTTTATGTCGAGTGGAGAGCCTACGCCGAGAATGGTGTTTGGAGAGGTTCCGACGTTGAAGGAAGCGGAGGAAGCCACGGCTGAATTGAAGCACGCGATTGATCAGTAA
Protein sequence	>MS.gene96799.t1 MGGGGTMRTAAKLAGIGVARSGFRGTTVTYPAEKQWSRNRASSPTRVLSQGTKTADVKPLHTSVSEDLNDWEFADESDLFMSSGEPTPRMVFGEVPTLKEAEEATAELKHAIDQ