Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96810.t1 | XP_003607708.1 | 99.3 | 287 | 1 | 1 | 1 | 286 | 151 | 437 | 1.20E-159 | 572.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96810.t1 | G7JF39 | 99.3 | 287 | 1 | 1 | 1 | 286 | 151 | 437 | 8.5e-160 | 572.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96810.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049695 | MS.gene96810 | 0.808174 | 3.52E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene96810 | 0.802222 | 6.21E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene96810 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene96810 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene96810 | 0.827706 | 1.35E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene96810 | 0.83321 | 6.08E-56 | -1.69E-46 |
| MS.gene050778 | MS.gene96810 | 0.828182 | 1.04E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene96810 | 0.8386 | 2.61E-57 | -1.69E-46 |
| MS.gene050959 | MS.gene96810 | 0.81832 | 2.09E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene96810 | 0.825513 | 4.50E-54 | -1.69E-46 |
| MS.gene051577 | MS.gene96810 | 0.806881 | 6.63E-50 | -1.69E-46 |
| MS.gene051626 | MS.gene96810 | 0.816473 | 5.43E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene96810 | 0.828285 | 9.79E-55 | -1.69E-46 |
| MS.gene052133 | MS.gene96810 | 0.82034 | 7.22E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene96810 | 0.811356 | 7.29E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene96810 | 0.833056 | 6.64E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene96810 | 0.831017 | 2.12E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene96810 | 0.854469 | 1.21E-61 | -1.69E-46 |
| MS.gene052856 | MS.gene96810 | 0.820155 | 7.96E-53 | -1.69E-46 |
| MS.gene053074 | MS.gene96810 | 0.806005 | 1.01E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene96810 | 0.835839 | 1.33E-56 | -1.69E-46 |
| MS.gene053174 | MS.gene96810 | 0.816354 | 5.78E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene96810 | 0.866662 | 2.42E-65 | -1.69E-46 |
| MS.gene053630 | MS.gene96810 | 0.810262 | 1.26E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene96810 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene96810 | -0.822186 | 2.71E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene96810 | 0.831693 | 1.44E-55 | -1.69E-46 |
| MS.gene056553 | MS.gene96810 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene056643 | MS.gene96810 | 0.814973 | 1.17E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene96810 | 0.813096 | 3.04E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene96810 | 0.822712 | 2.05E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene96810 | 0.821234 | 4.50E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene96810 | 0.824144 | 9.46E-54 | -1.69E-46 |
| MS.gene058851 | MS.gene96810 | 0.808426 | 3.11E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene96810 | 0.862873 | 3.72E-64 | -1.69E-46 |
| MS.gene058982 | MS.gene96810 | 0.836172 | 1.09E-56 | -1.69E-46 |
| MS.gene059937 | MS.gene96810 | 0.825144 | 5.50E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene96810 | 0.853347 | 2.54E-61 | -1.69E-46 |
| MS.gene060404 | MS.gene96810 | 0.811372 | 7.23E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene96810 | 0.824415 | 8.17E-54 | -1.69E-46 |
| MS.gene060480 | MS.gene96810 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene96810 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene96810 | 0.830838 | 2.34E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96810.t1 | MTR_4g081420 | 99.303 | 287 | 1 | 1 | 1 | 286 | 151 | 437 | 0.0 | 582 |
| MS.gene96810.t1 | MTR_2g010860 | 53.497 | 286 | 123 | 6 | 4 | 285 | 97 | 376 | 3.93e-92 | 278 |
| MS.gene96810.t1 | MTR_2g010870 | 54.710 | 276 | 111 | 5 | 22 | 285 | 82 | 355 | 1.53e-91 | 276 |
| MS.gene96810.t1 | MTR_3g072920 | 51.653 | 242 | 103 | 7 | 49 | 283 | 214 | 448 | 8.76e-73 | 230 |
| MS.gene96810.t1 | MTR_1g024980 | 51.261 | 238 | 103 | 3 | 49 | 283 | 171 | 398 | 7.27e-72 | 226 |
| MS.gene96810.t1 | MTR_3g463270 | 44.583 | 240 | 116 | 8 | 54 | 283 | 154 | 386 | 2.44e-57 | 189 |
| MS.gene96810.t1 | MTR_5g012220 | 34.375 | 224 | 94 | 7 | 76 | 285 | 105 | 289 | 2.07e-31 | 118 |
| MS.gene96810.t1 | MTR_4g101450 | 35.238 | 210 | 100 | 6 | 79 | 285 | 98 | 274 | 4.21e-29 | 112 |
| MS.gene96810.t1 | MTR_5g094440 | 32.864 | 213 | 129 | 5 | 73 | 283 | 68 | 268 | 3.63e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96810.t1 | AT5G54630 | 71.711 | 304 | 64 | 7 | 1 | 285 | 171 | 471 | 1.17e-144 | 415 |
| MS.gene96810.t1 | AT4G27240 | 76.357 | 258 | 58 | 3 | 31 | 285 | 173 | 430 | 1.07e-138 | 398 |
| MS.gene96810.t1 | AT4G27240 | 75.217 | 230 | 54 | 3 | 31 | 257 | 173 | 402 | 7.03e-118 | 345 |
| MS.gene96810.t1 | AT1G11490 | 50.598 | 251 | 110 | 5 | 44 | 285 | 119 | 364 | 1.52e-74 | 232 |
| MS.gene96810.t1 | AT1G11490 | 50.598 | 251 | 110 | 5 | 44 | 285 | 119 | 364 | 1.52e-74 | 232 |
| MS.gene96810.t1 | AT1G75710 | 46.875 | 256 | 109 | 5 | 54 | 285 | 206 | 458 | 3.23e-63 | 206 |
| MS.gene96810.t1 | AT2G29660 | 41.634 | 257 | 125 | 7 | 46 | 283 | 120 | 370 | 2.04e-50 | 170 |
| MS.gene96810.t1 | AT4G22560 | 38.605 | 215 | 86 | 9 | 73 | 283 | 89 | 261 | 2.25e-30 | 115 |
| MS.gene96810.t1 | AT1G62520 | 38.863 | 211 | 96 | 7 | 77 | 285 | 100 | 279 | 3.53e-30 | 115 |
| MS.gene96810.t1 | AT4G12450 | 33.180 | 217 | 96 | 7 | 77 | 283 | 97 | 274 | 1.54e-24 | 100 |
Find 49 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACTGGATTTGATTCTT+TGG | 0.236240 | 4.3:-28644086 | MS.gene96810:CDS |
| CTTGGCAGTTACTGAACTTT+TGG | 0.259869 | 4.3:-28644608 | MS.gene96810:intron |
| GACACCTAGGATGTTTCTTC+TGG | 0.309460 | 4.3:+28644416 | None:intergenic |
| ACCACAGTAGCTTGTTCTCT+TGG | 0.380190 | 4.3:-28644358 | MS.gene96810:CDS |
| TCTCTTGAAACAGATTCTAA+TGG | 0.386384 | 4.3:-28645125 | MS.gene96810:CDS |
| GCTTGTTCTCTTGGTCTCAA+TGG | 0.401559 | 4.3:-28644349 | MS.gene96810:CDS |
| AAAATATTTACCAGCATGCT+TGG | 0.405089 | 4.3:+28645028 | None:intergenic |
| AAGGAGTTGAAAGGTGGAAT+AGG | 0.409316 | 4.3:-28644256 | MS.gene96810:CDS |
| GTTGTGTTTGTAGAATCATT+AGG | 0.411461 | 4.3:-28644297 | MS.gene96810:CDS |
| TAATTGCTGGTAGGGTTCAT+AGG | 0.416479 | 4.3:-28644138 | MS.gene96810:CDS |
| ACTGGATTTGATTCTTTGGC+TGG | 0.418812 | 4.3:-28644082 | MS.gene96810:CDS |
| CAAGAAATGGCATCTCAAAC+TGG | 0.425597 | 4.3:-28644100 | MS.gene96810:CDS |
| GTGGTGTTCATTCAAGTAAT+AGG | 0.426313 | 4.3:-28645151 | MS.gene96810:CDS |
| AAAAGAAAAGGTGATTTCCT+TGG | 0.433309 | 4.3:+28645203 | None:intergenic |
| ACTTGAAAACATTCAAGAAA+TGG | 0.445655 | 4.3:-28644113 | MS.gene96810:CDS |
| GTGGTGAACAGTTTAACAAA+TGG | 0.446542 | 4.3:-28645076 | MS.gene96810:CDS |
| TAATGAACCTTCACTTAGAA+AGG | 0.446634 | 4.3:-28644179 | MS.gene96810:CDS |
| GATTCTTTGGCTGGTAAAGT+AGG | 0.457682 | 4.3:-28644073 | MS.gene96810:CDS |
| GTTGAAGAAGTCCTAAAAGA+AGG | 0.458747 | 4.3:+28645230 | None:intergenic |
| ATGCAGAGTAATTGCTGGTA+GGG | 0.484307 | 4.3:-28644146 | MS.gene96810:CDS |
| TACCAGCATGCTTGGAGAGA+TGG | 0.491155 | 4.3:+28645036 | None:intergenic |
| ATAGTATGCAGAGTAATTGC+TGG | 0.496317 | 4.3:-28644151 | MS.gene96810:CDS |
| TGGTGAACAGTTTAACAAAT+GGG | 0.498621 | 4.3:-28645075 | MS.gene96810:CDS |
| GACCCTTCTGACAAAAGAAA+AGG | 0.499545 | 4.3:+28645191 | None:intergenic |
| ATCAATGCCTTTCTAAGTGA+AGG | 0.505745 | 4.3:+28644172 | None:intergenic |
| CATCCTAGGTGTCTAGCTGA+TGG | 0.521265 | 4.3:-28644406 | MS.gene96810:CDS |
| CACCATCTCTCCAAGCATGC+TGG | 0.523843 | 4.3:-28645038 | MS.gene96810:intron |
| AAACAAGGAAGAAGAGCTCT+AGG | 0.526190 | 4.3:+28644013 | None:intergenic |
| AAATTATATGCAGGACAAGC+TGG | 0.530091 | 4.3:-28644558 | MS.gene96810:CDS |
| AGGTCTTTATTCAAACATTG+AGG | 0.530157 | 4.3:-28644053 | MS.gene96810:CDS |
| AGATTCATCAAGGAAAATAG+TGG | 0.534245 | 4.3:-28644581 | MS.gene96810:CDS |
| AGAAAAGGTGATTTCCTTGG+AGG | 0.540659 | 4.3:+28645206 | None:intergenic |
| CACAACATCTACAAGTGGAA+GGG | 0.551250 | 4.3:-28644227 | MS.gene96810:CDS |
| GGACTTCTTCAACTCCTCCA+AGG | 0.558541 | 4.3:-28645220 | MS.gene96810:CDS |
| TATGCAGAGTAATTGCTGGT+AGG | 0.562940 | 4.3:-28644147 | MS.gene96810:CDS |
| TCACAACATCTACAAGTGGA+AGG | 0.571126 | 4.3:-28644228 | MS.gene96810:CDS |
| AACTCCAGAAGAAACATCCT+AGG | 0.571187 | 4.3:-28644420 | MS.gene96810:CDS |
| AAATAGTGGAAATTATATGC+AGG | 0.573880 | 4.3:-28644567 | MS.gene96810:CDS |
| TTGAAGAAGTCCTAAAAGAA+GGG | 0.580726 | 4.3:+28645231 | None:intergenic |
| TCTGCTAAGAAGGAGTTGAA+AGG | 0.586835 | 4.3:-28644265 | MS.gene96810:CDS |
| ATTTGAAGAGTACAGAGAGA+TGG | 0.595060 | 4.3:-28644461 | MS.gene96810:CDS |
| GTTTGTAGAATCATTAGGAG+TGG | 0.602627 | 4.3:-28644292 | MS.gene96810:CDS |
| TTGCAAATTACCACAAAACA+AGG | 0.607767 | 4.3:+28643998 | None:intergenic |
| TTTCCATCAGCTAGACACCT+AGG | 0.608502 | 4.3:+28644403 | None:intergenic |
| GCTAAGAAGGAGTTGAAAGG+TGG | 0.609494 | 4.3:-28644262 | MS.gene96810:CDS |
| CTCTCTCTATTCTGCCACAG+TGG | 0.632803 | 4.3:+28644521 | None:intergenic |
| ACCAAGAGAACAAGCTACTG+TGG | 0.672385 | 4.3:+28644357 | None:intergenic |
| ACTGTTACTTGTCACAAATG+TGG | 0.687396 | 4.3:-28645095 | MS.gene96810:CDS |
| TTAAAGTCAGAAAACCACTG+TGG | 0.819817 | 4.3:-28644535 | MS.gene96810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTCAAAATATCT+AGG | - | chr4.3:28644444-28644463 | MS.gene96810:CDS | 10.0% |
| !!! | TTTTTATTAAAAATTCTTCT+TGG | - | chr4.3:28644229-28644248 | MS.gene96810:CDS | 10.0% |
| !! | CAAACAATTCTAAATTAAAA+AGG | + | chr4.3:28644411-28644430 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAATAAAATCTGT+TGG | + | chr4.3:28644440-28644459 | None:intergenic | 15.0% |
| !!! | TATGCTATAGAATTTTTTTA+TGG | - | chr4.3:28644311-28644330 | MS.gene96810:CDS | 15.0% |
| !! | AATTCTAAATTAAAAAGGCA+TGG | + | chr4.3:28644406-28644425 | None:intergenic | 20.0% |
| ! | AATACTAGGATAAAGTAGAT+TGG | + | chr4.3:28644496-28644515 | None:intergenic | 25.0% |
| ! | ACTTGAAAACATTCAAGAAA+TGG | - | chr4.3:28645123-28645142 | MS.gene96810:CDS | 25.0% |
| ! | TGTTCAATGTTCAAAATACT+AGG | + | chr4.3:28644510-28644529 | None:intergenic | 25.0% |
| ! | TTTGTGGTCAGAAAAATATT+TGG | + | chr4.3:28644266-28644285 | None:intergenic | 25.0% |
| !! | AAATAGTGGAAATTATATGC+AGG | - | chr4.3:28644669-28644688 | MS.gene96810:intron | 25.0% |
| !! | ATTACTTTAACCCTTCTTTT+AGG | - | chr4.3:28643995-28644014 | MS.gene96810:CDS | 25.0% |
| !! | TAAAAATTCTTCTTGGCTTT+AGG | - | chr4.3:28644236-28644255 | MS.gene96810:CDS | 25.0% |
| !!! | AAATCCACACTTTTTGAATT+TGG | - | chr4.3:28644355-28644374 | MS.gene96810:CDS | 25.0% |
| !!! | AATCCACACTTTTTGAATTT+GGG | - | chr4.3:28644356-28644375 | MS.gene96810:CDS | 25.0% |
| !!! | AGAATAATTTGTTTTTCCCT+TGG | - | chr4.3:28644610-28644629 | MS.gene96810:intron | 25.0% |
| !!! | ATTTCTTGAATGTTTTCAAG+TGG | + | chr4.3:28645124-28645143 | None:intergenic | 25.0% |
| !!! | CTAAAGTTTTTTGCATATTG+TGG | + | chr4.3:28644751-28644770 | None:intergenic | 25.0% |
| !!! | GCTATAGAATTTTTTTATGG+TGG | - | chr4.3:28644314-28644333 | MS.gene96810:CDS | 25.0% |
| AAAAGAAAAGGTGATTTCCT+TGG | + | chr4.3:28644036-28644055 | None:intergenic | 30.0% | |
| AAAATATTTACCAGCATGCT+TGG | + | chr4.3:28644211-28644230 | None:intergenic | 30.0% | |
| AGATTCATCAAGGAAAATAG+TGG | - | chr4.3:28644655-28644674 | MS.gene96810:intron | 30.0% | |
| AGCATATCAGATAAAGACTA+TGG | + | chr4.3:28644297-28644316 | None:intergenic | 30.0% | |
| AGGATAAAGTAGATTGGAAA+AGG | + | chr4.3:28644490-28644509 | None:intergenic | 30.0% | |
| AGGTCTTTATTCAAACATTG+AGG | - | chr4.3:28645183-28645202 | MS.gene96810:CDS | 30.0% | |
| GGATAAAGTAGATTGGAAAA+GGG | + | chr4.3:28644489-28644508 | None:intergenic | 30.0% | |
| GTTGTGTTTGTAGAATCATT+AGG | - | chr4.3:28644939-28644958 | MS.gene96810:intron | 30.0% | |
| TAATGAACCTTCACTTAGAA+AGG | - | chr4.3:28645057-28645076 | MS.gene96810:CDS | 30.0% | |
| TCAAACTGGATTTGATTCTT+TGG | - | chr4.3:28645150-28645169 | MS.gene96810:CDS | 30.0% | |
| TCTCTTGAAACAGATTCTAA+TGG | - | chr4.3:28644111-28644130 | MS.gene96810:CDS | 30.0% | |
| TGGTGAACAGTTTAACAAAT+GGG | - | chr4.3:28644161-28644180 | MS.gene96810:CDS | 30.0% | |
| TTGAAGAAGTCCTAAAAGAA+GGG | + | chr4.3:28644008-28644027 | None:intergenic | 30.0% | |
| TTGCAAATTACCACAAAACA+AGG | + | chr4.3:28645241-28645260 | None:intergenic | 30.0% | |
| ! | AATGAACTTTTACGGTTCTA+TGG | - | chr4.3:28644854-28644873 | MS.gene96810:intron | 30.0% |
| ! | CTGATGGAAATGAACTTTTA+CGG | - | chr4.3:28644846-28644865 | MS.gene96810:intron | 30.0% |
| ! | TTTTCTGACCACAAACTTTT+TGG | - | chr4.3:28644271-28644290 | MS.gene96810:CDS | 30.0% |
| !! | CAGAATAGAGAGAGTTTTAA+AGG | - | chr4.3:28644724-28644743 | MS.gene96810:intron | 30.0% |
| AAAAGTTCAGTAACTGCCAA+GGG | + | chr4.3:28644629-28644648 | None:intergenic | 35.0% | |
| AAATTATATGCAGGACAAGC+TGG | - | chr4.3:28644678-28644697 | MS.gene96810:intron | 35.0% | |
| AGTCCCAAATTCAAAAAGTG+TGG | + | chr4.3:28644362-28644381 | None:intergenic | 35.0% | |
| ATAGTATGCAGAGTAATTGC+TGG | - | chr4.3:28645085-28645104 | MS.gene96810:CDS | 35.0% | |
| ATCAATGCCTTTCTAAGTGA+AGG | + | chr4.3:28645067-28645086 | None:intergenic | 35.0% | |
| GTGGTGAACAGTTTAACAAA+TGG | - | chr4.3:28644160-28644179 | MS.gene96810:CDS | 35.0% | |
| GTGGTGTTCATTCAAGTAAT+AGG | - | chr4.3:28644085-28644104 | MS.gene96810:CDS | 35.0% | |
| GTTGAAGAAGTCCTAAAAGA+AGG | + | chr4.3:28644009-28644028 | None:intergenic | 35.0% | |
| GTTTGTAGAATCATTAGGAG+TGG | - | chr4.3:28644944-28644963 | MS.gene96810:intron | 35.0% | |
| TTAAAGTCAGAAAACCACTG+TGG | - | chr4.3:28644701-28644720 | MS.gene96810:intron | 35.0% | |
| ! | ACTGTTACTTGTCACAAATG+TGG | - | chr4.3:28644141-28644160 | MS.gene96810:CDS | 35.0% |
| ! | ATTTGAAGAGTACAGAGAGA+TGG | - | chr4.3:28644775-28644794 | MS.gene96810:intron | 35.0% |
| ! | CACCTTTTCTTTTGTCAGAA+GGG | - | chr4.3:28644043-28644062 | MS.gene96810:CDS | 35.0% |
| ! | GTTTTCACAACATCTACAAG+TGG | - | chr4.3:28645004-28645023 | MS.gene96810:intron | 35.0% |
| ! | TCACCTTTTCTTTTGTCAGA+AGG | - | chr4.3:28644042-28644061 | MS.gene96810:CDS | 35.0% |
| !! | TTTTGGAAGGAGATTCATCA+AGG | - | chr4.3:28644645-28644664 | MS.gene96810:intron | 35.0% |
| AAACAAGGAAGAAGAGCTCT+AGG | + | chr4.3:28645226-28645245 | None:intergenic | 40.0% | |
| AACTCCAGAAGAAACATCCT+AGG | - | chr4.3:28644816-28644835 | MS.gene96810:intron | 40.0% | |
| AAGGAGTTGAAAGGTGGAAT+AGG | - | chr4.3:28644980-28644999 | MS.gene96810:intron | 40.0% | |
| ACTGGATTTGATTCTTTGGC+TGG | - | chr4.3:28645154-28645173 | MS.gene96810:CDS | 40.0% | |
| AGAAAAGGTGATTTCCTTGG+AGG | + | chr4.3:28644033-28644052 | None:intergenic | 40.0% | |
| ATGCAGAGTAATTGCTGGTA+GGG | - | chr4.3:28645090-28645109 | MS.gene96810:CDS | 40.0% | |
| CAAAAGTTCAGTAACTGCCA+AGG | + | chr4.3:28644630-28644649 | None:intergenic | 40.0% | |
| CAAGAAATGGCATCTCAAAC+TGG | - | chr4.3:28645136-28645155 | MS.gene96810:CDS | 40.0% | |
| CACAACATCTACAAGTGGAA+GGG | - | chr4.3:28645009-28645028 | MS.gene96810:intron | 40.0% | |
| GACCCTTCTGACAAAAGAAA+AGG | + | chr4.3:28644048-28644067 | None:intergenic | 40.0% | |
| GACTATGGCCAAAAAGTTTG+TGG | + | chr4.3:28644282-28644301 | None:intergenic | 40.0% | |
| GATTCTTTGGCTGGTAAAGT+AGG | - | chr4.3:28645163-28645182 | MS.gene96810:CDS | 40.0% | |
| TAATTGCTGGTAGGGTTCAT+AGG | - | chr4.3:28645098-28645117 | MS.gene96810:CDS | 40.0% | |
| TATGCAGAGTAATTGCTGGT+AGG | - | chr4.3:28645089-28645108 | MS.gene96810:CDS | 40.0% | |
| TCACAACATCTACAAGTGGA+AGG | - | chr4.3:28645008-28645027 | MS.gene96810:intron | 40.0% | |
| TCTGCTAAGAAGGAGTTGAA+AGG | - | chr4.3:28644971-28644990 | MS.gene96810:intron | 40.0% | |
| ! | CTTGGCAGTTACTGAACTTT+TGG | - | chr4.3:28644628-28644647 | MS.gene96810:intron | 40.0% |
| ! | CTTTTGTCAGAAGGGTCTAA+TGG | - | chr4.3:28644051-28644070 | MS.gene96810:CDS | 40.0% |
| ! | GAAGGGTCTAATGGTTTTCA+TGG | - | chr4.3:28644060-28644079 | MS.gene96810:CDS | 40.0% |
| ! | GAGTGGTTTTTCTGCTAAGA+AGG | - | chr4.3:28644961-28644980 | MS.gene96810:intron | 40.0% |
| ! | GCAGTTACTGAACTTTTGGA+AGG | - | chr4.3:28644632-28644651 | MS.gene96810:intron | 40.0% |
| ! | TCTAATGGTTTTCATGGTGG+TGG | - | chr4.3:28644066-28644085 | MS.gene96810:CDS | 40.0% |
| !!! | AGCTCTTCTTCCTTGTTTTG+TGG | - | chr4.3:28645228-28645247 | MS.gene96810:CDS | 40.0% |
| ACCAAGAGAACAAGCTACTG+TGG | + | chr4.3:28644882-28644901 | None:intergenic | 45.0% | |
| GACACCTAGGATGTTTCTTC+TGG | + | chr4.3:28644823-28644842 | None:intergenic | 45.0% | |
| GCTAAGAAGGAGTTGAAAGG+TGG | - | chr4.3:28644974-28644993 | MS.gene96810:intron | 45.0% | |
| GCTTGTTCTCTTGGTCTCAA+TGG | - | chr4.3:28644887-28644906 | MS.gene96810:intron | 45.0% | |
| TTTCCATCAGCTAGACACCT+AGG | + | chr4.3:28644836-28644855 | None:intergenic | 45.0% | |
| ! | GGGTCTAATGGTTTTCATGG+TGG | - | chr4.3:28644063-28644082 | MS.gene96810:CDS | 45.0% |
| !! | ACCACAGTAGCTTGTTCTCT+TGG | - | chr4.3:28644878-28644897 | MS.gene96810:intron | 45.0% |
| CATCCTAGGTGTCTAGCTGA+TGG | - | chr4.3:28644830-28644849 | MS.gene96810:intron | 50.0% | |
| CTCTCTCTATTCTGCCACAG+TGG | + | chr4.3:28644718-28644737 | None:intergenic | 50.0% | |
| GGACTTCTTCAACTCCTCCA+AGG | - | chr4.3:28644016-28644035 | MS.gene96810:CDS | 50.0% | |
| TACCAGCATGCTTGGAGAGA+TGG | + | chr4.3:28644203-28644222 | None:intergenic | 50.0% | |
| CACCATCTCTCCAAGCATGC+TGG | - | chr4.3:28644198-28644217 | MS.gene96810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28643991 | 28645267 | 28643991 | ID=MS.gene96810 |
| chr4.3 | mRNA | 28643991 | 28645267 | 28643991 | ID=MS.gene96810.t1;Parent=MS.gene96810 |
| chr4.3 | exon | 28645039 | 28645267 | 28645039 | ID=MS.gene96810.t1.exon1;Parent=MS.gene96810.t1 |
| chr4.3 | CDS | 28645039 | 28645267 | 28645039 | ID=cds.MS.gene96810.t1;Parent=MS.gene96810.t1 |
| chr4.3 | exon | 28643991 | 28644622 | 28643991 | ID=MS.gene96810.t1.exon2;Parent=MS.gene96810.t1 |
| chr4.3 | CDS | 28643991 | 28644622 | 28643991 | ID=cds.MS.gene96810.t1;Parent=MS.gene96810.t1 |
| Gene Sequence |
| Protein sequence |
