Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98291.t1 | XP_003602090.2 | 95.8 | 810 | 34 | 0 | 1 | 810 | 58 | 867 | 0.00E+00 | 1504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98291.t1 | Q84W56 | 72.3 | 828 | 204 | 6 | 1 | 809 | 90 | 911 | 0.0e+00 | 1166.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98291.t1 | G7J5I7 | 95.8 | 810 | 34 | 0 | 1 | 810 | 58 | 867 | 0.0e+00 | 1504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98291.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene98291 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene98291 | 0.81585 | 7.48E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene98291 | 0.824811 | 6.59E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene98291 | -0.844302 | 8.22E-59 | -1.69E-46 |
| MS.gene050529 | MS.gene98291 | 0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene98291 | 0.868245 | 7.53E-66 | -1.69E-46 |
| MS.gene050812 | MS.gene98291 | 0.822837 | 1.91E-53 | -1.69E-46 |
| MS.gene051171 | MS.gene98291 | 0.857225 | 1.89E-62 | -1.69E-46 |
| MS.gene051240 | MS.gene98291 | 0.85292 | 3.36E-61 | -1.69E-46 |
| MS.gene051242 | MS.gene98291 | 0.861066 | 1.33E-63 | -1.69E-46 |
| MS.gene051244 | MS.gene98291 | 0.824084 | 9.78E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene98291 | 0.802814 | 4.69E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene98291 | 0.850759 | 1.38E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene98291 | -0.817354 | 3.45E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene98291 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene98291 | 0.803668 | 3.12E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene98291 | 0.828993 | 6.60E-55 | -1.69E-46 |
| MS.gene052469 | MS.gene98291 | 0.841641 | 4.20E-58 | -1.69E-46 |
| MS.gene052600 | MS.gene98291 | 0.834208 | 3.42E-56 | -1.69E-46 |
| MS.gene053330 | MS.gene98291 | 0.867774 | 1.07E-65 | -1.69E-46 |
| MS.gene053557 | MS.gene98291 | 0.819486 | 1.13E-52 | -1.69E-46 |
| MS.gene053907 | MS.gene98291 | 0.823432 | 1.39E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene98291 | 0.835528 | 1.59E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene98291 | 0.807204 | 5.67E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene98291 | 0.848963 | 4.38E-60 | -1.69E-46 |
| MS.gene055539 | MS.gene98291 | 0.814262 | 1.69E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene98291 | 0.865606 | 5.23E-65 | -1.69E-46 |
| MS.gene05556 | MS.gene98291 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene98291 | 0.811568 | 6.56E-51 | -1.69E-46 |
| MS.gene056305 | MS.gene98291 | 0.843974 | 1.01E-58 | -1.69E-46 |
| MS.gene056633 | MS.gene98291 | 0.841318 | 5.11E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene98291 | 0.806093 | 9.73E-50 | -1.69E-46 |
| MS.gene056664 | MS.gene98291 | 0.848482 | 5.96E-60 | -1.69E-46 |
| MS.gene056979 | MS.gene98291 | 0.847077 | 1.45E-59 | -1.69E-46 |
| MS.gene057121 | MS.gene98291 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene98291 | 0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene98291 | 0.823174 | 1.60E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene98291 | 0.819854 | 9.33E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene98291 | 0.878175 | 3.47E-69 | -1.69E-46 |
| MS.gene058276 | MS.gene98291 | 0.88262 | 8.94E-71 | -1.69E-46 |
| MS.gene058743 | MS.gene98291 | 0.869098 | 3.99E-66 | -1.69E-46 |
| MS.gene058746 | MS.gene98291 | 0.842585 | 2.36E-58 | -1.69E-46 |
| MS.gene058833 | MS.gene98291 | 0.809496 | 1.84E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene98291 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene98291 | 0.817656 | 2.95E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene98291 | 0.829391 | 5.29E-55 | -1.69E-46 |
| MS.gene060083 | MS.gene98291 | 0.847901 | 8.63E-60 | -1.69E-46 |
| MS.gene060407 | MS.gene98291 | 0.868897 | 4.64E-66 | -1.69E-46 |
| MS.gene061231 | MS.gene98291 | 0.803756 | 2.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98291.t1 | MTR_3g089020 | 97.778 | 810 | 18 | 0 | 1 | 810 | 58 | 867 | 0.0 | 1630 |
| MS.gene98291.t1 | MTR_4g103770 | 86.880 | 625 | 78 | 2 | 1 | 625 | 62 | 682 | 0.0 | 1129 |
| MS.gene98291.t1 | MTR_7g014365 | 88.372 | 43 | 5 | 0 | 659 | 701 | 203 | 245 | 2.30e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98291.t1 | AT5G63420 | 72.563 | 831 | 197 | 7 | 1 | 809 | 90 | 911 | 0.0 | 1195 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGATGCAAGATTTA+AGG | 0.149877 | 3.1:+61396995 | None:intergenic |
| GCCTTAAATCTTGCATCTTT+TGG | 0.181875 | 3.1:-61396996 | MS.gene98291:CDS |
| TTGGCTGGAAACACCTTAAA+AGG | 0.186376 | 3.1:-61395518 | MS.gene98291:CDS |
| TATTTGTTGGCATGTCTTTA+AGG | 0.202740 | 3.1:-61398069 | MS.gene98291:CDS |
| CAGGGGAATCGGATGAATTT+TGG | 0.207468 | 3.1:-61394359 | MS.gene98291:CDS |
| CAAATCTTTGTGGACATCTT+TGG | 0.240355 | 3.1:-61394013 | MS.gene98291:CDS |
| ATCCATGGATGAACATAAAA+AGG | 0.267555 | 3.1:-61395204 | MS.gene98291:CDS |
| ATTGGTGGTTTGGGTGAAAT+TGG | 0.278425 | 3.1:-61401102 | MS.gene98291:CDS |
| GATTCACTGGTTGTCCTTCC+AGG | 0.285382 | 3.1:+61398327 | None:intergenic |
| CAAGTGATTCATGCTCCTTC+AGG | 0.286343 | 3.1:+61396070 | None:intergenic |
| TTTCTTATAAATGTTGTATC+AGG | 0.286634 | 3.1:+61400693 | None:intergenic |
| CCATTACGTGTTCTTCCTAT+TGG | 0.296621 | 3.1:-61401120 | MS.gene98291:CDS |
| GAAGGCGATTTATCTGATTC+AGG | 0.300145 | 3.1:-61394378 | MS.gene98291:CDS |
| AAAGCTGCTGCCGATTTAAC+TGG | 0.300725 | 3.1:-61398207 | MS.gene98291:CDS |
| ATACAACATTTATAAGAAAA+TGG | 0.305949 | 3.1:-61400689 | MS.gene98291:CDS |
| CCTTGGAAAAGAAAATTTAC+AGG | 0.307438 | 3.1:-61395837 | MS.gene98291:intron |
| GATGTAGATTTGATGCAAAC+TGG | 0.345615 | 3.1:+61398244 | None:intergenic |
| TGAAAGGAAGGATGGCTCTC+TGG | 0.354049 | 3.1:-61394092 | MS.gene98291:CDS |
| CTTCTAAATGTTGATATTCC+AGG | 0.354594 | 3.1:+61395227 | None:intergenic |
| AATAGAAGGGTTCTTTCTAA+TGG | 0.365515 | 3.1:-61395869 | MS.gene98291:CDS |
| TGTTCTTCCTATTGGTGGTT+TGG | 0.367711 | 3.1:-61401112 | MS.gene98291:CDS |
| ATTTCCATTCAATTTGTTGC+CGG | 0.369154 | 3.1:+61393043 | None:intergenic |
| ATCTTTGGCACTTAAATATG+AGG | 0.370175 | 3.1:-61393998 | MS.gene98291:intron |
| ATCATATCGGTGCGTTGCCT+TGG | 0.376836 | 3.1:-61400623 | MS.gene98291:CDS |
| TTATTATATCAGGTATTTGT+TGG | 0.378839 | 3.1:-61398082 | MS.gene98291:intron |
| ATCGCAATGGCAATTACTTC+GGG | 0.381041 | 3.1:+61395317 | None:intergenic |
| GTTCTTCCTATTGGTGGTTT+GGG | 0.382494 | 3.1:-61401111 | MS.gene98291:CDS |
| TTTCACACTTGAGAAATAGA+AGG | 0.384172 | 3.1:-61395883 | MS.gene98291:CDS |
| GCATTTATTACCAGAGTTGA+TGG | 0.385749 | 3.1:+61398001 | None:intergenic |
| ATGCACCAGGTTATTAAGAA+TGG | 0.386575 | 3.1:-61395920 | MS.gene98291:intron |
| TTGTTTGCAGTGTGGTGGAC+TGG | 0.387215 | 3.1:+61395177 | None:intergenic |
| GAATGAATTGTATGCTTGTT+GGG | 0.394201 | 3.1:-61401080 | MS.gene98291:CDS |
| CAACTTTCTCCCAGTTAAAT+CGG | 0.401807 | 3.1:+61398197 | None:intergenic |
| CTAGTTCTTCGTTGTTCTGA+TGG | 0.406463 | 3.1:-61399167 | MS.gene98291:CDS |
| TAGATGGCATCATTGTGATT+AGG | 0.412496 | 3.1:-61395651 | MS.gene98291:intron |
| AATGAAAACTTACACACATC+TGG | 0.415170 | 3.1:-61396637 | MS.gene98291:CDS |
| AGAATGAGAATTGCATTAGA+TGG | 0.417290 | 3.1:-61395667 | MS.gene98291:CDS |
| ATTGGATCAACAATAGTTAT+GGG | 0.421279 | 3.1:-61396664 | MS.gene98291:CDS |
| GGCAAATCCCACGTTGGTCC+TGG | 0.424025 | 3.1:-61395245 | MS.gene98291:CDS |
| GATTGGATCAACAATAGTTA+TGG | 0.427638 | 3.1:-61396665 | MS.gene98291:CDS |
| CTATTCTTCACACTGGGGAT+TGG | 0.430987 | 3.1:-61399142 | MS.gene98291:CDS |
| ATCACACGGGACTCATTACC+AGG | 0.431628 | 3.1:+61396712 | None:intergenic |
| GAATTACCACAAGATGTCTA+TGG | 0.437596 | 3.1:-61395487 | MS.gene98291:CDS |
| GAGAAAGAGACCACTACAAC+TGG | 0.440855 | 3.1:-61394405 | MS.gene98291:CDS |
| CATTTGAGATAGAACCAATC+AGG | 0.444198 | 3.1:-61399220 | MS.gene98291:CDS |
| CTGGACAATGCAAATCTTTG+TGG | 0.444645 | 3.1:-61394023 | MS.gene98291:CDS |
| ACATGCATATCGTGGAGAAT+TGG | 0.445598 | 3.1:-61396614 | MS.gene98291:intron |
| GAATCACTTGGAAAATCAAC+TGG | 0.447489 | 3.1:-61396057 | MS.gene98291:CDS |
| TCTAATGGTTTCATTTCCCT+TGG | 0.447711 | 3.1:-61395854 | MS.gene98291:CDS |
| TATCGCAATGGCAATTACTT+CGG | 0.447759 | 3.1:+61395316 | None:intergenic |
| ACCAGAGTTGATGGGTCAAA+TGG | 0.450689 | 3.1:+61398010 | None:intergenic |
| TCATATCGGTGCGTTGCCTT+GGG | 0.452996 | 3.1:-61400622 | MS.gene98291:intron |
| GGAATGAATTGTATGCTTGT+TGG | 0.453098 | 3.1:-61401081 | MS.gene98291:CDS |
| TTACGTGTTCTTCCTATTGG+TGG | 0.453954 | 3.1:-61401117 | MS.gene98291:CDS |
| GAGATAAACACAAAATTGTC+TGG | 0.454789 | 3.1:-61395266 | MS.gene98291:CDS |
| TTTATCTGATTCAGGGGAAT+CGG | 0.455159 | 3.1:-61394370 | MS.gene98291:CDS |
| AGTGATGGTGACAAAGCATT+TGG | 0.457642 | 3.1:-61395718 | MS.gene98291:CDS |
| ATCAGACATTTCTTCAGACT+TGG | 0.457953 | 3.1:+61394221 | None:intergenic |
| CTGATTGGTTCTATCTCAAA+TGG | 0.459887 | 3.1:+61399221 | None:intergenic |
| ATTTCACCCAAACCACCAAT+AGG | 0.461698 | 3.1:+61401105 | None:intergenic |
| ATTGACGAGACACCACTTGA+TGG | 0.463031 | 3.1:-61399032 | MS.gene98291:CDS |
| GTTACAATAAGCAGATCCTT+AGG | 0.463234 | 3.1:+61397146 | None:intergenic |
| TCAACTGATGATGCAATGAA+TGG | 0.463811 | 3.1:+61394333 | None:intergenic |
| GATCTGCTTATTGTAACAAC+TGG | 0.465028 | 3.1:-61397140 | MS.gene98291:CDS |
| TCAACAAATGTGCTCTCACC+TGG | 0.467892 | 3.1:-61398345 | MS.gene98291:CDS |
| GATGGGATCAGCAGAAGTCC+TGG | 0.469354 | 3.1:-61394042 | MS.gene98291:CDS |
| CCTTGGTAAGTTTGAAAGCA+TGG | 0.473674 | 3.1:+61396967 | None:intergenic |
| ATGAATCGCATATCAGAGAT+TGG | 0.474239 | 3.1:-61396682 | MS.gene98291:CDS |
| TCTAATCAGGAGATCAAGAA+TGG | 0.475221 | 3.1:-61393133 | MS.gene98291:intron |
| CGATTTAACTGGGAGAAAGT+TGG | 0.476469 | 3.1:-61398196 | MS.gene98291:intron |
| AATCAGCTTCTTGACTTCCT+CGG | 0.476513 | 3.1:+61394152 | None:intergenic |
| CTCAGAGCTTGTTGGCTGAT+GGG | 0.478275 | 3.1:-61394059 | MS.gene98291:CDS |
| CACAAAGATTTGCATTGTCC+AGG | 0.480128 | 3.1:+61394024 | None:intergenic |
| TCTCAGAGCTTGTTGGCTGA+TGG | 0.481622 | 3.1:-61394060 | MS.gene98291:CDS |
| ATAGAATGAGTCACCCTGAT+TGG | 0.482517 | 3.1:+61399206 | None:intergenic |
| TTGGAAAATCAACTGGCATT+CGG | 0.486197 | 3.1:-61396050 | MS.gene98291:CDS |
| TCATCAGGTCATCCCAGCAT+TGG | 0.486824 | 3.1:-61399650 | MS.gene98291:intron |
| ATACAAAACAATATCTTCCT+TGG | 0.488079 | 3.1:+61396950 | None:intergenic |
| TCAAGAAGCTGATTGATTTG+CGG | 0.490229 | 3.1:-61394143 | MS.gene98291:CDS |
| CAATTCTCATTCTTTCATCA+AGG | 0.490742 | 3.1:+61395677 | None:intergenic |
| GACAAAGCATTTGGTACATC+CGG | 0.492657 | 3.1:-61395709 | MS.gene98291:CDS |
| ACAAAGAACAAGTTTGTCGC+TGG | 0.495185 | 3.1:-61399245 | MS.gene98291:CDS |
| GATGTCTATGGCTGGACAAA+GGG | 0.497228 | 3.1:-61395475 | MS.gene98291:CDS |
| AAGGCGATTTATCTGATTCA+GGG | 0.497243 | 3.1:-61394377 | MS.gene98291:CDS |
| CAAAAGTCCACTGGCTCACA+TGG | 0.497633 | 3.1:-61395396 | MS.gene98291:CDS |
| CATTCTATTCCTGACTGTTG+TGG | 0.499925 | 3.1:-61399191 | MS.gene98291:CDS |
| ACCTCTTGTTTGCAGTGTGG+TGG | 0.502821 | 3.1:+61395172 | None:intergenic |
| TTAGAAGCAGCTTGGAAGGA+TGG | 0.505273 | 3.1:-61398040 | MS.gene98291:CDS |
| AGGCACATTTCAGCTTCAAA+AGG | 0.507331 | 3.1:-61398282 | MS.gene98291:CDS |
| GATTTAAAGTTGTGAAAGGA+AGG | 0.508605 | 3.1:-61394104 | MS.gene98291:CDS |
| GAAAGGAAGGATGGCTCTCT+GGG | 0.509095 | 3.1:-61394091 | MS.gene98291:CDS |
| ACATTTCAGCTTCAAAAGGA+AGG | 0.510397 | 3.1:-61398278 | MS.gene98291:CDS |
| CTGAAGGAGCATGAATCACT+TGG | 0.511676 | 3.1:-61396069 | MS.gene98291:CDS |
| CGTTATATCCTCATTGATGC+TGG | 0.516389 | 3.1:-61401048 | MS.gene98291:CDS |
| AACAAGTATTCTCCATGTAC+AGG | 0.517823 | 3.1:+61396093 | None:intergenic |
| TGGCTGGAAACACCTTAAAA+GGG | 0.519920 | 3.1:-61395517 | MS.gene98291:CDS |
| AGAGATATCTCAGAGCTTGT+TGG | 0.522256 | 3.1:-61394067 | MS.gene98291:CDS |
| TGCATCTTCCTTTACAATGG+AGG | 0.526281 | 3.1:-61399608 | MS.gene98291:intron |
| TATTGATGCTTATGCACCTA+AGG | 0.528326 | 3.1:-61397162 | MS.gene98291:CDS |
| GACAGATTTAAAGTTGTGAA+AGG | 0.528331 | 3.1:-61394108 | MS.gene98291:CDS |
| GCATCAAATCTACATCGGAT+TGG | 0.529989 | 3.1:-61398237 | MS.gene98291:CDS |
| TTCATCAAGGAAGAGTTCAC+CGG | 0.530019 | 3.1:+61395690 | None:intergenic |
| TCAATTTGTCAGGTTATCCC+TGG | 0.531224 | 3.1:-61396730 | MS.gene98291:intron |
| CAGCATCAATGAGGATATAA+CGG | 0.531872 | 3.1:+61401049 | None:intergenic |
| GGACATACTTAGAAGCAGCT+TGG | 0.532316 | 3.1:-61398048 | MS.gene98291:CDS |
| ATCAACATTTAGAAGATCCA+TGG | 0.532606 | 3.1:-61395219 | MS.gene98291:CDS |
| TTGACGAGACACCACTTGAT+GGG | 0.533040 | 3.1:-61399031 | MS.gene98291:CDS |
| TCCATTTGACCCATCAACTC+TGG | 0.534282 | 3.1:-61398011 | MS.gene98291:intron |
| AGAACTAGTCCACAACAGTC+AGG | 0.535143 | 3.1:+61399182 | None:intergenic |
| TACCACAAGATGTCTATGGC+TGG | 0.535188 | 3.1:-61395483 | MS.gene98291:CDS |
| TCTTCACACTGGGGATTGGA+AGG | 0.536502 | 3.1:-61399138 | MS.gene98291:intron |
| CATGGTCATGAAGATCATAT+CGG | 0.538341 | 3.1:-61400636 | MS.gene98291:CDS |
| GGTGTATTGGAATCCAATGC+TGG | 0.538955 | 3.1:+61399637 | None:intergenic |
| GCCGAATACCTCCATTGTAA+AGG | 0.539763 | 3.1:+61399600 | None:intergenic |
| TAAAGTTGTGAAAGGAAGGA+TGG | 0.540086 | 3.1:-61394100 | MS.gene98291:CDS |
| ATCTGCCACAACAGATTCAC+TGG | 0.540628 | 3.1:+61398314 | None:intergenic |
| TTGTGGCAGATTCATTATTG+AGG | 0.541904 | 3.1:-61398302 | MS.gene98291:CDS |
| AGATTCTGTTCAACGTAGGA+TGG | 0.542555 | 3.1:-61401172 | MS.gene98291:CDS |
| ATTAAGAATGGAGAGATGCT+TGG | 0.543149 | 3.1:-61395908 | MS.gene98291:CDS |
| ATACTTAGAAGCAGCTTGGA+AGG | 0.544162 | 3.1:-61398044 | MS.gene98291:CDS |
| TTAGAGGAACTCTCTAAAGA+AGG | 0.550937 | 3.1:-61398987 | MS.gene98291:CDS |
| CAAAGAACAAGTTTGTCGCT+GGG | 0.552337 | 3.1:-61399244 | MS.gene98291:CDS |
| CATTTCAGCTTCAAAAGGAA+GGG | 0.552543 | 3.1:-61398277 | MS.gene98291:CDS |
| GCCATTGCGATAGAAAATCC+TGG | 0.555157 | 3.1:-61395305 | MS.gene98291:CDS |
| CTAATCAGGAGATCAAGAAT+GGG | 0.558723 | 3.1:-61393132 | MS.gene98291:intron |
| CTGTCCCGTCAAAAGTCCAC+TGG | 0.559295 | 3.1:-61395405 | MS.gene98291:CDS |
| CATTTATTACCAGAGTTGAT+GGG | 0.561091 | 3.1:+61398002 | None:intergenic |
| GTCGGAGATGTTGAGGAAGA+TGG | 0.562067 | 3.1:-61395363 | MS.gene98291:CDS |
| TCACAACTTTAAATCTGTCA+CGG | 0.562346 | 3.1:+61394112 | None:intergenic |
| AGATGTTGAGGAAGATGGTG+AGG | 0.567241 | 3.1:-61395358 | MS.gene98291:CDS |
| TTGGCAATATCTTGAGGACA+TGG | 0.567651 | 3.1:-61393092 | MS.gene98291:CDS |
| GAACTGTGTCGGAGATGTTG+AGG | 0.569522 | 3.1:-61395370 | MS.gene98291:CDS |
| ATGGAACTATTCTTCACACT+GGG | 0.571280 | 3.1:-61399148 | MS.gene98291:CDS |
| GTCCAGCCATAGACATCTTG+TGG | 0.573025 | 3.1:+61395481 | None:intergenic |
| ACCACTACAACTGGAGCTGA+AGG | 0.573383 | 3.1:-61394396 | MS.gene98291:CDS |
| CTCTAAAGAAGGAGTAACAT+TGG | 0.574233 | 3.1:-61398976 | MS.gene98291:intron |
| TTCACACTTGAGAAATAGAA+GGG | 0.575027 | 3.1:-61395882 | MS.gene98291:CDS |
| AGATGTCTATGGCTGGACAA+AGG | 0.582028 | 3.1:-61395476 | MS.gene98291:CDS |
| CAATGGTTATGTTTCACGAA+AGG | 0.585188 | 3.1:-61394292 | MS.gene98291:CDS |
| GCCTTCAGCTCCAGTTGTAG+TGG | 0.589034 | 3.1:+61394395 | None:intergenic |
| GTTCTTTCCATGTGAGCCAG+TGG | 0.589970 | 3.1:+61395389 | None:intergenic |
| AAGCTGCTGCCGATTTAACT+GGG | 0.591068 | 3.1:-61398206 | MS.gene98291:CDS |
| TGGTAATGAGTCCCGTGTGA+TGG | 0.593761 | 3.1:-61396710 | MS.gene98291:CDS |
| CCAATAGGAAGAACACGTAA+TGG | 0.600542 | 3.1:+61401120 | None:intergenic |
| AGCAGCTTGGAAGGATGGAA+AGG | 0.602363 | 3.1:-61398035 | MS.gene98291:CDS |
| TCACATGGAAAGAACTGTGT+CGG | 0.607611 | 3.1:-61395381 | MS.gene98291:CDS |
| CCATGCTTTCAAACTTACCA+AGG | 0.609185 | 3.1:-61396967 | MS.gene98291:CDS |
| GACAACCAGTGAATCTGTTG+TGG | 0.610763 | 3.1:-61398319 | MS.gene98291:CDS |
| TCCACCACACTGCAAACAAG+AGG | 0.611195 | 3.1:-61395173 | MS.gene98291:intron |
| GTCTGAAGAAATGTCTGATG+CGG | 0.611515 | 3.1:-61394217 | MS.gene98291:CDS |
| GATGATGGCATTGACACAGA+AGG | 0.613399 | 3.1:-61394438 | MS.gene98291:CDS |
| CAAATGTGCTCTCACCTGGA+AGG | 0.615112 | 3.1:-61398341 | MS.gene98291:CDS |
| GATGGAACTATTCTTCACAC+TGG | 0.616053 | 3.1:-61399149 | MS.gene98291:CDS |
| AATATCTTGAGGACATGGAA+AGG | 0.619122 | 3.1:-61393087 | MS.gene98291:CDS |
| TGGAGAATACTTGTTCCTGA+AGG | 0.627983 | 3.1:-61396085 | MS.gene98291:CDS |
| GTTACCTCTTGTTTGCAGTG+TGG | 0.633512 | 3.1:+61395169 | None:intergenic |
| ATGTAGATTTGATGCAAACT+GGG | 0.634137 | 3.1:+61398245 | None:intergenic |
| GATTCATCATTTCCATCACA+CGG | 0.639799 | 3.1:+61396698 | None:intergenic |
| ATTTGAGATAGAACCAATCA+GGG | 0.643383 | 3.1:-61399219 | MS.gene98291:CDS |
| ATTCATCATTTCCATCACAC+GGG | 0.645095 | 3.1:+61396699 | None:intergenic |
| AGGCGATTTATCTGATTCAG+GGG | 0.651319 | 3.1:-61394376 | MS.gene98291:CDS |
| ATTGTCTAGTGATGAAACAC+CGG | 0.652259 | 3.1:-61393062 | MS.gene98291:CDS |
| GTGTATTGGAATCCAATGCT+GGG | 0.657667 | 3.1:+61399638 | None:intergenic |
| AAATCAATCAAAGCAAACAA+TGG | 0.658404 | 3.1:-61394309 | MS.gene98291:CDS |
| TTGGATCAACAATAGTTATG+GGG | 0.659409 | 3.1:-61396663 | MS.gene98291:CDS |
| ACATCTGGACATGCATATCG+TGG | 0.659861 | 3.1:-61396622 | MS.gene98291:CDS |
| ACATGATACCAGCATCAATG+AGG | 0.660800 | 3.1:+61401040 | None:intergenic |
| AGTTTGCATCAAATCTACAT+CGG | 0.660918 | 3.1:-61398242 | MS.gene98291:CDS |
| TGGAAGATTCTGTTCAACGT+AGG | 0.664297 | 3.1:-61401176 | MS.gene98291:CDS |
| TTGATATTCCAGGACCAACG+TGG | 0.664721 | 3.1:+61395237 | None:intergenic |
| AAGATGGTGAGGAAGTACAG+TGG | 0.672062 | 3.1:-61395347 | MS.gene98291:CDS |
| GAAGCACTTGTTATAACACA+TGG | 0.674931 | 3.1:-61400654 | MS.gene98291:CDS |
| TGAGGAAGTACAGTGGTAAG+CGG | 0.677242 | 3.1:-61395340 | MS.gene98291:CDS |
| ATGCAGTTGAAATATAGTGA+TGG | 0.680617 | 3.1:-61395733 | MS.gene98291:intron |
| GCAAGATTTAAGGCAGCACG+TGG | 0.681321 | 3.1:+61397005 | None:intergenic |
| TGTACAGGAAGAAAATGTTG+CGG | 0.705564 | 3.1:+61396108 | None:intergenic |
| TGATATTCCAGGACCAACGT+GGG | 0.714591 | 3.1:+61395238 | None:intergenic |
| TTGTCTGGCAAATCCCACGT+TGG | 0.720381 | 3.1:-61395251 | MS.gene98291:CDS |
| CAACTTTAAATCTGTCACGG+AGG | 0.723247 | 3.1:+61394115 | None:intergenic |
| ATAGGAAGAACACGTAATGG+CGG | 0.726743 | 3.1:+61401123 | None:intergenic |
| TCACACGGGACTCATTACCA+GGG | 0.727328 | 3.1:+61396713 | None:intergenic |
| TGGAACTATTCTTCACACTG+GGG | 0.745314 | 3.1:-61399147 | MS.gene98291:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 61393051 | 61401199 | 61393051 | ID=MS.gene98291 |
| chr3.1 | mRNA | 61393051 | 61401199 | 61393051 | ID=MS.gene98291.t1;Parent=MS.gene98291 |
| chr3.1 | exon | 61401033 | 61401199 | 61401033 | ID=MS.gene98291.t1.exon1;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61401033 | 61401199 | 61401033 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61400623 | 61400746 | 61400623 | ID=MS.gene98291.t1.exon2;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61400623 | 61400746 | 61400623 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61399609 | 61399665 | 61399609 | ID=MS.gene98291.t1.exon3;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61399609 | 61399665 | 61399609 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61399139 | 61399330 | 61399139 | ID=MS.gene98291.t1.exon4;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61399139 | 61399330 | 61399139 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61398977 | 61399054 | 61398977 | ID=MS.gene98291.t1.exon5;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61398977 | 61399054 | 61398977 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61398197 | 61398379 | 61398197 | ID=MS.gene98291.t1.exon6;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61398197 | 61398379 | 61398197 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61398012 | 61398092 | 61398012 | ID=MS.gene98291.t1.exon7;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61398012 | 61398092 | 61398012 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61397133 | 61397198 | 61397133 | ID=MS.gene98291.t1.exon8;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61397133 | 61397198 | 61397133 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61396941 | 61397033 | 61396941 | ID=MS.gene98291.t1.exon9;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61396941 | 61397033 | 61396941 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61396615 | 61396740 | 61396615 | ID=MS.gene98291.t1.exon10;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61396615 | 61396740 | 61396615 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61396041 | 61396154 | 61396041 | ID=MS.gene98291.t1.exon11;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61396041 | 61396154 | 61396041 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61395838 | 61395933 | 61395838 | ID=MS.gene98291.t1.exon12;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61395838 | 61395933 | 61395838 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61395652 | 61395749 | 61395652 | ID=MS.gene98291.t1.exon13;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61395652 | 61395749 | 61395652 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61395174 | 61395574 | 61395174 | ID=MS.gene98291.t1.exon14;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61395174 | 61395574 | 61395174 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61393999 | 61394459 | 61393999 | ID=MS.gene98291.t1.exon15;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61393999 | 61394459 | 61393999 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| chr3.1 | exon | 61393051 | 61393146 | 61393051 | ID=MS.gene98291.t1.exon16;Parent=MS.gene98291.t1 |
| chr3.1 | CDS | 61393051 | 61393146 | 61393051 | ID=cds.MS.gene98291.t1;Parent=MS.gene98291.t1 |
| Gene Sequence |
| Protein sequence |
