Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99435.t1 | XP_013454886.1 | 80.9 | 204 | 32 | 2 | 1 | 197 | 17 | 220 | 1.00E-77 | 299.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99435.t1 | Q39255 | 55.3 | 188 | 54 | 2 | 10 | 197 | 3 | 160 | 5.0e-49 | 195.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99435.t1 | A0A072UGR2 | 80.9 | 204 | 32 | 2 | 1 | 197 | 17 | 220 | 7.3e-78 | 299.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene99435 | 0.846461 | 2.14E-59 | -1.69E-46 |
MS.gene049283 | MS.gene99435 | 0.812889 | 3.38E-51 | -1.69E-46 |
MS.gene049499 | MS.gene99435 | 0.803048 | 4.20E-49 | -1.69E-46 |
MS.gene049711 | MS.gene99435 | 0.817884 | 2.62E-52 | -1.69E-46 |
MS.gene049850 | MS.gene99435 | 0.830199 | 3.36E-55 | -1.69E-46 |
MS.gene049983 | MS.gene99435 | 0.813849 | 2.08E-51 | -1.69E-46 |
MS.gene050559 | MS.gene99435 | 0.829012 | 6.53E-55 | -1.69E-46 |
MS.gene050561 | MS.gene99435 | 0.817019 | 4.10E-52 | -1.69E-46 |
MS.gene050562 | MS.gene99435 | 0.81321 | 2.87E-51 | -1.69E-46 |
MS.gene050945 | MS.gene99435 | 0.804251 | 2.36E-49 | -1.69E-46 |
MS.gene051699 | MS.gene99435 | 0.825401 | 4.78E-54 | -1.69E-46 |
MS.gene051744 | MS.gene99435 | 0.803299 | 3.72E-49 | -1.69E-46 |
MS.gene052016 | MS.gene99435 | 0.804824 | 1.79E-49 | -1.69E-46 |
MS.gene052239 | MS.gene99435 | -0.82167 | 3.57E-53 | -1.69E-46 |
MS.gene052463 | MS.gene99435 | 0.825424 | 4.72E-54 | -1.69E-46 |
MS.gene052533 | MS.gene99435 | 0.830779 | 2.42E-55 | -1.69E-46 |
MS.gene052534 | MS.gene99435 | 0.813201 | 2.89E-51 | -1.69E-46 |
MS.gene052582 | MS.gene99435 | 0.816974 | 4.19E-52 | -1.69E-46 |
MS.gene052584 | MS.gene99435 | 0.825402 | 4.78E-54 | -1.69E-46 |
MS.gene053226 | MS.gene99435 | 0.819027 | 1.44E-52 | -1.69E-46 |
MS.gene053963 | MS.gene99435 | 0.80754 | 4.81E-50 | -1.69E-46 |
MS.gene05415 | MS.gene99435 | 0.829214 | 5.83E-55 | -1.69E-46 |
MS.gene054222 | MS.gene99435 | 0.810159 | 1.32E-50 | -1.69E-46 |
MS.gene05423 | MS.gene99435 | 0.827552 | 1.47E-54 | -1.69E-46 |
MS.gene054651 | MS.gene99435 | 0.833678 | 4.65E-56 | -1.69E-46 |
MS.gene056050 | MS.gene99435 | 0.803464 | 3.44E-49 | -1.69E-46 |
MS.gene056174 | MS.gene99435 | 0.811036 | 8.56E-51 | -1.69E-46 |
MS.gene056272 | MS.gene99435 | 0.801983 | 6.96E-49 | -1.69E-46 |
MS.gene056699 | MS.gene99435 | 0.81445 | 1.53E-51 | -1.69E-46 |
MS.gene056776 | MS.gene99435 | 0.850853 | 1.30E-60 | -1.69E-46 |
MS.gene056779 | MS.gene99435 | 0.812839 | 3.46E-51 | -1.69E-46 |
MS.gene05686 | MS.gene99435 | 0.809377 | 1.95E-50 | -1.69E-46 |
MS.gene057102 | MS.gene99435 | 0.851042 | 1.15E-60 | -1.69E-46 |
MS.gene057208 | MS.gene99435 | 0.824501 | 7.80E-54 | -1.69E-46 |
MS.gene057893 | MS.gene99435 | -0.80196 | 7.04E-49 | -1.69E-46 |
MS.gene058008 | MS.gene99435 | 0.805194 | 1.50E-49 | -1.69E-46 |
MS.gene058159 | MS.gene99435 | 0.8204 | 7.00E-53 | -1.69E-46 |
MS.gene058279 | MS.gene99435 | 0.822052 | 2.91E-53 | -1.69E-46 |
MS.gene058625 | MS.gene99435 | 0.803063 | 4.17E-49 | -1.69E-46 |
MS.gene059170 | MS.gene99435 | 0.801694 | 7.98E-49 | -1.69E-46 |
MS.gene05985 | MS.gene99435 | -0.845985 | 2.89E-59 | -1.69E-46 |
MS.gene059965 | MS.gene99435 | 0.804484 | 2.11E-49 | -1.69E-46 |
MS.gene060259 | MS.gene99435 | 0.801662 | 8.10E-49 | -1.69E-46 |
MS.gene060365 | MS.gene99435 | 0.822787 | 1.96E-53 | -1.69E-46 |
MS.gene060521 | MS.gene99435 | 0.829802 | 4.20E-55 | -1.69E-46 |
MS.gene060634 | MS.gene99435 | -0.811295 | 7.52E-51 | -1.69E-46 |
MS.gene060840 | MS.gene99435 | 0.806674 | 7.34E-50 | -1.69E-46 |
MS.gene060935 | MS.gene99435 | 0.801617 | 8.28E-49 | -1.69E-46 |
MS.gene060937 | MS.gene99435 | 0.804446 | 2.15E-49 | -1.69E-46 |
MS.gene061100 | MS.gene99435 | 0.807905 | 4.02E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99435.t1 | MTR_4g017860 | 88.235 | 204 | 17 | 2 | 1 | 197 | 17 | 220 | 6.51e-119 | 336 |
MS.gene99435.t1 | MTR_5g022710 | 60.638 | 188 | 38 | 3 | 10 | 197 | 4 | 155 | 8.43e-66 | 199 |
MS.gene99435.t1 | MTR_5g022730 | 60.106 | 188 | 39 | 3 | 10 | 197 | 4 | 155 | 2.41e-65 | 198 |
MS.gene99435.t1 | MTR_4g032400 | 56.383 | 188 | 47 | 2 | 10 | 197 | 11 | 163 | 5.63e-65 | 197 |
MS.gene99435.t1 | MTR_3g110048 | 53.723 | 188 | 53 | 2 | 10 | 197 | 5 | 158 | 3.21e-64 | 195 |
MS.gene99435.t1 | MTR_7g021400 | 57.979 | 188 | 43 | 3 | 10 | 197 | 5 | 156 | 4.11e-62 | 190 |
MS.gene99435.t1 | MTR_4g032450 | 56.085 | 189 | 46 | 4 | 10 | 197 | 23 | 175 | 1.16e-61 | 189 |
MS.gene99435.t1 | MTR_7g094150 | 58.511 | 188 | 42 | 3 | 10 | 197 | 5 | 156 | 1.96e-61 | 188 |
MS.gene99435.t1 | MTR_7g094120 | 53.723 | 188 | 53 | 3 | 10 | 197 | 6 | 159 | 2.24e-60 | 186 |
MS.gene99435.t1 | MTR_7g094170 | 58.511 | 188 | 42 | 3 | 10 | 197 | 5 | 156 | 3.36e-60 | 185 |
MS.gene99435.t1 | MTR_4g032510 | 53.968 | 189 | 45 | 3 | 10 | 197 | 6 | 153 | 2.35e-58 | 180 |
MS.gene99435.t1 | MTR_5g085030 | 51.872 | 187 | 55 | 2 | 10 | 196 | 4 | 155 | 3.26e-58 | 180 |
MS.gene99435.t1 | MTR_8g468480 | 50.000 | 188 | 59 | 2 | 10 | 197 | 4 | 156 | 6.33e-57 | 177 |
MS.gene99435.t1 | MTR_8g056060 | 53.723 | 188 | 52 | 3 | 10 | 197 | 5 | 157 | 1.41e-56 | 176 |
MS.gene99435.t1 | MTR_4g032460 | 52.660 | 188 | 48 | 1 | 10 | 197 | 4 | 150 | 6.18e-56 | 174 |
MS.gene99435.t1 | MTR_4g032500 | 51.337 | 187 | 50 | 2 | 11 | 197 | 7 | 152 | 2.97e-55 | 172 |
MS.gene99435.t1 | MTR_7g021380 | 54.787 | 188 | 49 | 3 | 10 | 197 | 5 | 156 | 5.45e-55 | 172 |
MS.gene99435.t1 | MTR_7g094280 | 51.064 | 188 | 55 | 4 | 11 | 197 | 7 | 158 | 1.73e-54 | 171 |
MS.gene99435.t1 | MTR_4g033455 | 48.691 | 191 | 62 | 3 | 7 | 197 | 6 | 160 | 1.04e-52 | 166 |
MS.gene99435.t1 | MTR_7g094310 | 48.404 | 188 | 50 | 4 | 11 | 197 | 7 | 148 | 3.15e-48 | 154 |
MS.gene99435.t1 | MTR_4g033460 | 46.328 | 177 | 59 | 3 | 7 | 183 | 6 | 146 | 5.49e-45 | 149 |
MS.gene99435.t1 | MTR_4g033460 | 46.512 | 129 | 26 | 3 | 46 | 174 | 160 | 245 | 1.01e-22 | 92.0 |
MS.gene99435.t1 | MTR_5g082340 | 44.681 | 188 | 58 | 3 | 10 | 197 | 4 | 145 | 1.53e-42 | 140 |
MS.gene99435.t1 | MTR_1g099870 | 51.471 | 136 | 33 | 1 | 62 | 197 | 1 | 103 | 1.13e-41 | 136 |
MS.gene99435.t1 | MTR_4g021390 | 42.268 | 194 | 73 | 4 | 4 | 197 | 1 | 155 | 1.25e-40 | 135 |
MS.gene99435.t1 | MTR_7g094410 | 51.974 | 152 | 64 | 5 | 11 | 155 | 7 | 156 | 1.66e-37 | 128 |
MS.gene99435.t1 | MTR_4g032420 | 43.210 | 162 | 43 | 2 | 36 | 197 | 38 | 150 | 2.45e-36 | 124 |
MS.gene99435.t1 | MTR_7g094360 | 45.109 | 184 | 83 | 6 | 11 | 177 | 7 | 189 | 8.30e-34 | 119 |
MS.gene99435.t1 | MTR_8g089730 | 45.912 | 159 | 33 | 2 | 39 | 197 | 1 | 106 | 1.93e-33 | 115 |
MS.gene99435.t1 | MTR_7g094350 | 44.624 | 186 | 83 | 7 | 10 | 177 | 5 | 188 | 2.96e-30 | 110 |
MS.gene99435.t1 | MTR_4g127240 | 44.056 | 143 | 39 | 4 | 41 | 181 | 21 | 124 | 3.14e-28 | 102 |
MS.gene99435.t1 | MTR_4g131980 | 41.566 | 166 | 54 | 4 | 10 | 174 | 4 | 127 | 4.30e-27 | 100 |
MS.gene99435.t1 | MTR_4g119422 | 38.547 | 179 | 69 | 3 | 10 | 187 | 230 | 368 | 3.43e-26 | 103 |
MS.gene99435.t1 | MTR_7g006370 | 37.778 | 180 | 67 | 4 | 4 | 183 | 1 | 135 | 5.82e-26 | 97.4 |
MS.gene99435.t1 | MTR_8g056090 | 38.356 | 146 | 39 | 4 | 51 | 195 | 30 | 125 | 4.22e-21 | 84.7 |
MS.gene99435.t1 | MTR_7g071200 | 59.420 | 69 | 27 | 1 | 130 | 197 | 4 | 72 | 1.58e-20 | 81.6 |
MS.gene99435.t1 | MTR_2g066010 | 31.720 | 186 | 81 | 5 | 13 | 196 | 20 | 161 | 2.37e-19 | 82.0 |
MS.gene99435.t1 | MTR_4g032470 | 72.222 | 54 | 14 | 1 | 17 | 70 | 32 | 84 | 7.09e-19 | 79.0 |
MS.gene99435.t1 | MTR_4g032470 | 48.000 | 75 | 38 | 1 | 124 | 197 | 60 | 134 | 2.62e-16 | 72.4 |
MS.gene99435.t1 | MTR_2g065720 | 31.183 | 186 | 82 | 5 | 13 | 196 | 37 | 178 | 3.12e-18 | 79.3 |
MS.gene99435.t1 | MTR_1g112590 | 30.978 | 184 | 77 | 5 | 19 | 187 | 7 | 155 | 3.66e-18 | 77.8 |
MS.gene99435.t1 | MTR_7g094320 | 68.519 | 54 | 16 | 1 | 11 | 64 | 7 | 59 | 1.08e-17 | 75.5 |
MS.gene99435.t1 | MTR_7g094320 | 47.945 | 73 | 35 | 1 | 128 | 197 | 45 | 117 | 1.65e-14 | 67.4 |
MS.gene99435.t1 | MTR_4g032540 | 55.556 | 63 | 27 | 1 | 131 | 192 | 70 | 132 | 1.88e-16 | 72.8 |
MS.gene99435.t1 | MTR_5g096950 | 27.273 | 187 | 89 | 3 | 10 | 196 | 3 | 142 | 4.25e-13 | 64.3 |
MS.gene99435.t1 | MTR_8g007205 | 29.851 | 134 | 54 | 2 | 55 | 188 | 58 | 151 | 1.44e-11 | 62.4 |
MS.gene99435.t1 | MTR_8g007185 | 29.851 | 134 | 54 | 2 | 55 | 188 | 58 | 151 | 1.46e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99435.t1 | AT1G20140 | 55.080 | 187 | 55 | 3 | 11 | 197 | 6 | 163 | 1.96e-61 | 189 |
MS.gene99435.t1 | AT1G75950 | 55.319 | 188 | 54 | 2 | 10 | 197 | 3 | 160 | 2.26e-61 | 188 |
MS.gene99435.t1 | AT2G25700 | 52.941 | 187 | 59 | 2 | 11 | 197 | 6 | 163 | 2.43e-61 | 188 |
MS.gene99435.t1 | AT5G42190 | 57.754 | 187 | 59 | 3 | 11 | 197 | 5 | 171 | 7.54e-61 | 187 |
MS.gene99435.t1 | AT4G34210 | 50.532 | 188 | 55 | 4 | 10 | 197 | 3 | 152 | 3.28e-57 | 177 |
MS.gene99435.t1 | AT4G34470 | 50.000 | 188 | 56 | 4 | 10 | 197 | 3 | 152 | 4.46e-56 | 174 |
MS.gene99435.t1 | AT3G60010 | 49.474 | 190 | 57 | 3 | 10 | 197 | 2 | 154 | 3.68e-51 | 162 |
MS.gene99435.t1 | AT3G21850 | 45.789 | 190 | 62 | 4 | 10 | 197 | 3 | 153 | 1.65e-48 | 155 |
MS.gene99435.t1 | AT2G03160 | 45.833 | 192 | 96 | 4 | 10 | 197 | 3 | 190 | 6.78e-46 | 150 |
MS.gene99435.t1 | AT3G21860 | 43.386 | 189 | 67 | 3 | 10 | 197 | 3 | 152 | 4.38e-45 | 147 |
MS.gene99435.t1 | AT2G03170 | 44.444 | 189 | 62 | 4 | 10 | 197 | 3 | 149 | 7.93e-45 | 146 |
MS.gene99435.t1 | AT2G03190 | 43.386 | 189 | 82 | 4 | 10 | 197 | 3 | 167 | 6.09e-44 | 144 |
MS.gene99435.t1 | AT3G21830 | 44.444 | 189 | 65 | 4 | 10 | 197 | 3 | 152 | 1.23e-42 | 140 |
MS.gene99435.t1 | AT3G60020 | 42.564 | 195 | 64 | 5 | 9 | 197 | 1 | 153 | 2.68e-41 | 137 |
MS.gene99435.t1 | AT3G25650 | 46.073 | 191 | 74 | 6 | 10 | 197 | 3 | 167 | 3.57e-41 | 137 |
MS.gene99435.t1 | AT2G20160 | 41.489 | 188 | 68 | 3 | 10 | 196 | 3 | 149 | 3.25e-39 | 132 |
MS.gene99435.t1 | AT1G10230 | 41.053 | 190 | 77 | 3 | 8 | 196 | 1 | 156 | 9.93e-37 | 125 |
MS.gene99435.t1 | AT3G21840 | 41.935 | 155 | 50 | 3 | 10 | 163 | 3 | 118 | 1.98e-26 | 98.6 |
Find 44 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGCAAAAGATGATCAAAT+TGG | 0.231570 | 4.2:-83813730 | None:intergenic |
TGTCGCCGTCGGAACTTATC+AGG | 0.254151 | 4.2:+83813679 | None:intergenic |
TGGTCTTGTGTATCGTAAAA+AGG | 0.263569 | 4.2:-83813463 | MS.gene99435:CDS |
CGTTCGGGCTGCGAATTACT+TGG | 0.322167 | 4.2:-83813307 | MS.gene99435:CDS |
TACGCTGTTTGAACTCGTTC+GGG | 0.347745 | 4.2:-83813322 | MS.gene99435:CDS |
CTTGGATATTAAGAGCTTGC+TGG | 0.358500 | 4.2:-83813289 | MS.gene99435:CDS |
TTACGCTGTTTGAACTCGTT+CGG | 0.374750 | 4.2:-83813323 | MS.gene99435:CDS |
TCGCTGGTTACGTTTGAGAT+AGG | 0.416253 | 4.2:+83813570 | None:intergenic |
ACTTCTTTCTCTGCAGCCTT+AGG | 0.416639 | 4.2:+83813402 | None:intergenic |
GGAGGATGAGCTTGAAAAGT+GGG | 0.450380 | 4.2:-83813373 | MS.gene99435:CDS |
GTGGGATGCTGAATTTGTTA+AGG | 0.456238 | 4.2:-83813355 | MS.gene99435:CDS |
TGCAGAGAAAGAAGTGAGTA+AGG | 0.462604 | 4.2:-83813394 | MS.gene99435:CDS |
CTTACTTGTAACACTGTAGC+TGG | 0.467258 | 4.2:-83813264 | MS.gene99435:CDS |
TGATTTCTCTCCGGAGGAAG+AGG | 0.469662 | 4.2:-83813187 | MS.gene99435:CDS |
AAGCAAAAGATGATCAAATT+GGG | 0.474538 | 4.2:-83813729 | None:intergenic |
CGAATCTCTTCCTCTTCCTC+CGG | 0.489700 | 4.2:+83813177 | None:intergenic |
AGGAGGATGAGCTTGAAAAG+TGG | 0.500528 | 4.2:-83813374 | MS.gene99435:CDS |
GACATCGGAGCAGATTCGTC+AGG | 0.503138 | 4.2:-83813226 | MS.gene99435:CDS |
TTGCTGAAGAAGAAAAGCCT+TGG | 0.514532 | 4.2:-83813494 | MS.gene99435:CDS |
TGTTTGCGATTCTAATGCTA+CGG | 0.517651 | 4.2:+83813638 | None:intergenic |
GATTCGTAAGGAAAATCAAT+GGG | 0.519861 | 4.2:-83813160 | MS.gene99435:CDS |
TACGGCTTCGTCGATTTCGA+AGG | 0.534173 | 4.2:+83813656 | None:intergenic |
GACAATTGCGTGGACGACAC+TGG | 0.537246 | 4.2:-83813597 | MS.gene99435:CDS |
AGATTCGTAAGGAAAATCAA+TGG | 0.542843 | 4.2:-83813161 | MS.gene99435:CDS |
AACCAGCGAGATTCTAGCTA+TGG | 0.559406 | 4.2:-83813556 | MS.gene99435:CDS |
TACCATAGCTAGAATCTCGC+TGG | 0.560708 | 4.2:+83813554 | None:intergenic |
AGTACCGATGAAAAGAAATC+CGG | 0.562161 | 4.2:-83813435 | MS.gene99435:CDS |
GATTGCGAATGATTTCTCTC+CGG | 0.567371 | 4.2:-83813196 | MS.gene99435:CDS |
ATCCGGTGAAGATGTTCCTA+AGG | 0.572791 | 4.2:-83813418 | MS.gene99435:CDS |
TGCGAATGATTTCTCTCCGG+AGG | 0.588529 | 4.2:-83813193 | MS.gene99435:CDS |
GGAAGAGGAAGAGATTCGTA+AGG | 0.593859 | 4.2:-83813172 | MS.gene99435:CDS |
TTACTTGTAACACTGTAGCT+GGG | 0.593910 | 4.2:-83813263 | MS.gene99435:CDS |
AGCCTTAGGAACATCTTCAC+CGG | 0.599023 | 4.2:+83813416 | None:intergenic |
GAAAAGCCTTGGAAGTCGGA+TGG | 0.616563 | 4.2:-83813483 | MS.gene99435:CDS |
ACAAGACCATCCGACTTCCA+AGG | 0.617828 | 4.2:+83813477 | None:intergenic |
AGAAGAAAAGCCTTGGAAGT+CGG | 0.624063 | 4.2:-83813487 | MS.gene99435:CDS |
GATTTCGAAGGTGTCGCCGT+CGG | 0.632222 | 4.2:+83813668 | None:intergenic |
AGAGAAAGAAGTGAGTAAGG+AGG | 0.638426 | 4.2:-83813391 | MS.gene99435:CDS |
GTCGCCGTCGGAACTTATCA+GGG | 0.645078 | 4.2:+83813680 | None:intergenic |
CATGATCGAGGACAATTGCG+TGG | 0.657097 | 4.2:-83813607 | MS.gene99435:CDS |
ATCACCCTGATAAGTTCCGA+CGG | 0.660930 | 4.2:-83813684 | MS.gene99435:CDS |
AACAATCAAGTACATGATCG+AGG | 0.679565 | 4.2:-83813619 | MS.gene99435:CDS |
GATTATACGTGGTAAGACAT+CGG | 0.685652 | 4.2:-83813241 | MS.gene99435:CDS |
ACTGTAGCTGGGATTATACG+TGG | 0.729556 | 4.2:-83813252 | MS.gene99435:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AGATTCGTAAGGAAAATCAA+TGG | - | chr4.2:83813708-83813727 | MS.gene99435:CDS | 30.0% | |
GATTCGTAAGGAAAATCAAT+GGG | - | chr4.2:83813709-83813728 | MS.gene99435:CDS | 30.0% | |
AACAATCAAGTACATGATCG+AGG | - | chr4.2:83813250-83813269 | MS.gene99435:CDS | 35.0% | |
GATTATACGTGGTAAGACAT+CGG | - | chr4.2:83813628-83813647 | MS.gene99435:CDS | 35.0% | |
TGTTTGCGATTCTAATGCTA+CGG | + | chr4.2:83813234-83813253 | None:intergenic | 35.0% | |
TTACTTGTAACACTGTAGCT+GGG | - | chr4.2:83813606-83813625 | MS.gene99435:CDS | 35.0% | |
! | TTCACCGGATTTCTTTTCAT+CGG | + | chr4.2:83813441-83813460 | None:intergenic | 35.0% |
!! | AGTACCGATGAAAAGAAATC+CGG | - | chr4.2:83813434-83813453 | MS.gene99435:CDS | 35.0% |
!! | TGGTCTTGTGTATCGTAAAA+AGG | - | chr4.2:83813406-83813425 | MS.gene99435:CDS | 35.0% |
AGAAGAAAAGCCTTGGAAGT+CGG | - | chr4.2:83813382-83813401 | MS.gene99435:CDS | 40.0% | |
AGAGAAAGAAGTGAGTAAGG+AGG | - | chr4.2:83813478-83813497 | MS.gene99435:CDS | 40.0% | |
CTTACTTGTAACACTGTAGC+TGG | - | chr4.2:83813605-83813624 | MS.gene99435:CDS | 40.0% | |
CTTGGATATTAAGAGCTTGC+TGG | - | chr4.2:83813580-83813599 | MS.gene99435:CDS | 40.0% | |
GATTGCGAATGATTTCTCTC+CGG | - | chr4.2:83813673-83813692 | MS.gene99435:CDS | 40.0% | |
TGCAGAGAAAGAAGTGAGTA+AGG | - | chr4.2:83813475-83813494 | MS.gene99435:CDS | 40.0% | |
TTACGCTGTTTGAACTCGTT+CGG | - | chr4.2:83813546-83813565 | MS.gene99435:CDS | 40.0% | |
TTGCTGAAGAAGAAAAGCCT+TGG | - | chr4.2:83813375-83813394 | MS.gene99435:CDS | 40.0% | |
!! | GTGGGATGCTGAATTTGTTA+AGG | - | chr4.2:83813514-83813533 | MS.gene99435:CDS | 40.0% |
ACTGTAGCTGGGATTATACG+TGG | - | chr4.2:83813617-83813636 | MS.gene99435:CDS | 45.0% | |
ACTTCTTTCTCTGCAGCCTT+AGG | + | chr4.2:83813470-83813489 | None:intergenic | 45.0% | |
AGCCTTAGGAACATCTTCAC+CGG | + | chr4.2:83813456-83813475 | None:intergenic | 45.0% | |
AGGAGGATGAGCTTGAAAAG+TGG | - | chr4.2:83813495-83813514 | MS.gene99435:CDS | 45.0% | |
ATCACCCTGATAAGTTCCGA+CGG | - | chr4.2:83813185-83813204 | MS.gene99435:CDS | 45.0% | |
ATCCGGTGAAGATGTTCCTA+AGG | - | chr4.2:83813451-83813470 | MS.gene99435:CDS | 45.0% | |
GGAAGAGGAAGAGATTCGTA+AGG | - | chr4.2:83813697-83813716 | MS.gene99435:CDS | 45.0% | |
GGAGGATGAGCTTGAAAAGT+GGG | - | chr4.2:83813496-83813515 | MS.gene99435:CDS | 45.0% | |
TACCATAGCTAGAATCTCGC+TGG | + | chr4.2:83813318-83813337 | None:intergenic | 45.0% | |
TACGCTGTTTGAACTCGTTC+GGG | - | chr4.2:83813547-83813566 | MS.gene99435:CDS | 45.0% | |
! | AACCAGCGAGATTCTAGCTA+TGG | - | chr4.2:83813313-83813332 | MS.gene99435:CDS | 45.0% |
! | TCGCTGGTTACGTTTGAGAT+AGG | + | chr4.2:83813302-83813321 | None:intergenic | 45.0% |
ACAAGACCATCCGACTTCCA+AGG | + | chr4.2:83813395-83813414 | None:intergenic | 50.0% | |
CATGATCGAGGACAATTGCG+TGG | - | chr4.2:83813262-83813281 | MS.gene99435:CDS | 50.0% | |
CGAATCTCTTCCTCTTCCTC+CGG | + | chr4.2:83813695-83813714 | None:intergenic | 50.0% | |
GAAAAGCCTTGGAAGTCGGA+TGG | - | chr4.2:83813386-83813405 | MS.gene99435:CDS | 50.0% | |
TGATTTCTCTCCGGAGGAAG+AGG | - | chr4.2:83813682-83813701 | MS.gene99435:CDS | 50.0% | |
TGCGAATGATTTCTCTCCGG+AGG | - | chr4.2:83813676-83813695 | MS.gene99435:CDS | 50.0% | |
!! | TACGGCTTCGTCGATTTCGA+AGG | + | chr4.2:83813216-83813235 | None:intergenic | 50.0% |
CGTTCGGGCTGCGAATTACT+TGG | - | chr4.2:83813562-83813581 | MS.gene99435:CDS | 55.0% | |
GACAATTGCGTGGACGACAC+TGG | - | chr4.2:83813272-83813291 | MS.gene99435:CDS | 55.0% | |
GACATCGGAGCAGATTCGTC+AGG | - | chr4.2:83813643-83813662 | MS.gene99435:CDS | 55.0% | |
GTCGCCGTCGGAACTTATCA+GGG | + | chr4.2:83813192-83813211 | None:intergenic | 55.0% | |
TGTCGCCGTCGGAACTTATC+AGG | + | chr4.2:83813193-83813212 | None:intergenic | 55.0% | |
!! | GATTTCGAAGGTGTCGCCGT+CGG | + | chr4.2:83813204-83813223 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 83813149 | 83813742 | 83813149 | ID=MS.gene99435 |
chr4.2 | mRNA | 83813149 | 83813742 | 83813149 | ID=MS.gene99435.t1;Parent=MS.gene99435 |
chr4.2 | exon | 83813149 | 83813742 | 83813149 | ID=MS.gene99435.t1.exon1;Parent=MS.gene99435.t1 |
chr4.2 | CDS | 83813149 | 83813742 | 83813149 | ID=cds.MS.gene99435.t1;Parent=MS.gene99435.t1 |
Gene Sequence |
Protein sequence |