Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99578.t1 | XP_003629079.2 | 90.7 | 1233 | 115 | 0 | 1 | 1233 | 1 | 1233 | 0.00E+00 | 1381.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99578.t1 | Q9FJL0 | 68.5 | 1231 | 384 | 2 | 2 | 1231 | 11 | 1238 | 1.9e-303 | 1043.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99578.t1 | G7L8M1 | 90.7 | 1233 | 115 | 0 | 1 | 1233 | 1 | 1233 | 0.0e+00 | 1381.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene99578 | 0.800301 | 1.54E-48 | -1.69E-46 |
| MS.gene050901 | MS.gene99578 | 0.806781 | 6.96E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene99578 | 0.809298 | 2.03E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene99578 | 0.804 | 2.67E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene99578 | 0.828082 | 1.10E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene99578 | 0.813012 | 3.17E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene99578 | 0.818943 | 1.51E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene99578 | 0.821558 | 3.79E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene99578 | 0.806996 | 6.27E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene99578 | -0.805697 | 1.18E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene99578 | 0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene99578 | 0.807345 | 5.29E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene99578 | 0.824401 | 8.23E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene99578 | 0.830904 | 2.26E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene99578 | 0.805023 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99578 | MS.gene035825 | PPI |
| MS.gene99578 | MS.gene040722 | PPI |
| MS.gene99578 | MS.gene61618 | PPI |
| MS.gene66615 | MS.gene99578 | PPI |
| MS.gene35713 | MS.gene99578 | PPI |
| MS.gene043645 | MS.gene99578 | PPI |
| MS.gene061303 | MS.gene99578 | PPI |
| MS.gene043593 | MS.gene99578 | PPI |
| MS.gene99578 | MS.gene84088 | PPI |
| MS.gene064353 | MS.gene99578 | PPI |
| MS.gene45748 | MS.gene99578 | PPI |
| MS.gene95250 | MS.gene99578 | PPI |
| MS.gene073698 | MS.gene99578 | PPI |
| MS.gene73093 | MS.gene99578 | PPI |
| MS.gene99578 | MS.gene034360 | PPI |
| MS.gene99578 | MS.gene043595 | PPI |
| MS.gene035826 | MS.gene99578 | PPI |
| MS.gene064351 | MS.gene99578 | PPI |
| MS.gene035828 | MS.gene99578 | PPI |
| MS.gene99578 | MS.gene059302 | PPI |
| MS.gene070800 | MS.gene99578 | PPI |
| MS.gene99578 | MS.gene056169 | PPI |
| MS.gene99872 | MS.gene99578 | PPI |
| MS.gene043643 | MS.gene99578 | PPI |
| MS.gene016667 | MS.gene99578 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99578.t1 | MTR_8g072890 | 98.621 | 1233 | 17 | 0 | 1 | 1233 | 1 | 1233 | 0.0 | 2471 |
| MS.gene99578.t1 | MTR_7g091430 | 81.473 | 869 | 130 | 6 | 375 | 1233 | 4 | 851 | 0.0 | 1335 |
| MS.gene99578.t1 | MTR_7g091420 | 84.367 | 403 | 52 | 2 | 1 | 397 | 1 | 398 | 0.0 | 671 |
| MS.gene99578.t1 | MTR_1g069910 | 27.075 | 735 | 447 | 25 | 544 | 1226 | 516 | 1213 | 3.10e-46 | 182 |
| MS.gene99578.t1 | MTR_8g037325 | 23.877 | 1269 | 775 | 45 | 14 | 1206 | 1 | 1154 | 1.00e-44 | 177 |
| MS.gene99578.t1 | MTR_0003s0460 | 26.027 | 730 | 450 | 24 | 544 | 1221 | 507 | 1198 | 6.59e-42 | 168 |
| MS.gene99578.t1 | MTR_1g051825 | 22.970 | 862 | 496 | 29 | 450 | 1227 | 418 | 1195 | 3.75e-28 | 124 |
| MS.gene99578.t1 | MTR_1g051825 | 22.970 | 862 | 496 | 29 | 450 | 1227 | 442 | 1219 | 3.98e-28 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99578.t1 | AT5G48600 | 74.005 | 1231 | 319 | 1 | 2 | 1231 | 11 | 1241 | 0.0 | 1827 |
| MS.gene99578.t1 | AT5G48600 | 73.924 | 1231 | 317 | 2 | 2 | 1231 | 11 | 1238 | 0.0 | 1821 |
| MS.gene99578.t1 | AT5G62410 | 23.520 | 1284 | 761 | 49 | 14 | 1206 | 1 | 1154 | 2.23e-40 | 163 |
| MS.gene99578.t1 | AT3G47460 | 23.525 | 1271 | 774 | 46 | 14 | 1206 | 1 | 1151 | 1.33e-39 | 160 |
| MS.gene99578.t1 | AT3G47460 | 23.469 | 1274 | 774 | 47 | 14 | 1206 | 1 | 1154 | 3.39e-38 | 156 |
| MS.gene99578.t1 | AT3G54670 | 30.594 | 219 | 131 | 3 | 1025 | 1222 | 993 | 1211 | 5.96e-33 | 139 |
| MS.gene99578.t1 | AT2G27170 | 27.193 | 228 | 150 | 6 | 14 | 240 | 1 | 213 | 4.79e-14 | 77.8 |
| MS.gene99578.t1 | AT2G27170 | 27.193 | 228 | 150 | 6 | 14 | 240 | 1 | 213 | 4.79e-14 | 77.8 |
| MS.gene99578.t1 | AT2G27170 | 27.193 | 228 | 150 | 6 | 14 | 240 | 1 | 213 | 6.87e-14 | 77.4 |
| MS.gene99578.t1 | AT2G27170 | 27.193 | 228 | 150 | 6 | 14 | 240 | 1 | 213 | 6.87e-14 | 77.4 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGGTCCTTGAGATTT+TGG | 0.144036 | 8.3:+29622790 | None:intergenic |
| TGCCATATCATTAAAGTTAA+AGG | 0.163850 | 8.3:-29613865 | MS.gene99578:CDS |
| TGAAGGCTTTCTAGAATATT+TGG | 0.204321 | 8.3:-29622767 | MS.gene99578:CDS |
| CGGCGAGTTGTTACTCTTGA+TGG | 0.207554 | 8.3:-29615898 | MS.gene99578:CDS |
| ACCTTTCCCCTTCAATTTCT+TGG | 0.210576 | 8.3:+29622978 | None:intergenic |
| TTCCTTTAACTTTAATGATA+TGG | 0.226102 | 8.3:+29613863 | None:intergenic |
| TTTCAGACTGGATGAGTTTA+TGG | 0.229580 | 8.3:-29613898 | MS.gene99578:intron |
| TTCTAGCAATCATCAGAATT+TGG | 0.236958 | 8.3:-29624288 | MS.gene99578:CDS |
| TCAACTTCTTCATCATCTTT+TGG | 0.245174 | 8.3:+29614995 | None:intergenic |
| CGTTGCTACTTTCATGATAT+TGG | 0.267293 | 8.3:-29616769 | MS.gene99578:intron |
| TGTGCCCATCTTCCCACCTT+TGG | 0.273812 | 8.3:+29615828 | None:intergenic |
| AGGCCGTGCGCGAGCTGATT+CGG | 0.277703 | 8.3:+29624715 | None:intergenic |
| ATACAAAGAATTAGAAATAA+AGG | 0.288202 | 8.3:-29614478 | MS.gene99578:CDS |
| GGAACATATGAGACTGTTTC+TGG | 0.293079 | 8.3:-29623090 | MS.gene99578:CDS |
| TCTGCAATTGAATCAAGATT+TGG | 0.297027 | 8.3:+29614187 | None:intergenic |
| AAGAGTTATCTTTGTTGAAA+TGG | 0.310428 | 8.3:-29621239 | MS.gene99578:CDS |
| TGCTGCTTGTAACCTGAAAA+AGG | 0.312180 | 8.3:-29614257 | MS.gene99578:CDS |
| GTGCCCATCTTCCCACCTTT+GGG | 0.318440 | 8.3:+29615829 | None:intergenic |
| TGCTGAAATGAAGTCTGTTT+TGG | 0.321099 | 8.3:-29618284 | MS.gene99578:CDS |
| GATGCTATGTTGTTTGTGTT+TGG | 0.323307 | 8.3:-29624478 | MS.gene99578:CDS |
| GTGTTGACCTTGACAATAAT+AGG | 0.324515 | 8.3:-29622957 | MS.gene99578:CDS |
| GGTATATTATCCTCAAGTTT+TGG | 0.324998 | 8.3:+29620548 | None:intergenic |
| AAATAAAGGGGAAAGGTTAC+AGG | 0.325832 | 8.3:-29614464 | MS.gene99578:CDS |
| GATGAAATTGACGCCGCTTT+AGG | 0.328401 | 8.3:-29612749 | MS.gene99578:intron |
| AGTTCCGCATGACCATTTCT+TGG | 0.329081 | 8.3:+29624681 | None:intergenic |
| GCAATATCAACAGCATGTTC+TGG | 0.331761 | 8.3:-29616867 | MS.gene99578:CDS |
| TAATAGGTTTCTGATTCTTC+AGG | 0.340893 | 8.3:-29622941 | MS.gene99578:intron |
| ATAAATTGGGTGCAGAATTC+AGG | 0.341386 | 8.3:-29614335 | MS.gene99578:intron |
| CACCTTCTCATTTAGAAGCT+TGG | 0.349247 | 8.3:+29619414 | None:intergenic |
| AATCAGCTCGCGCACGGCCT+AGG | 0.366298 | 8.3:-29624712 | MS.gene99578:CDS |
| CACCTTGTTCAAGAGGAATC+AGG | 0.366357 | 8.3:+29618320 | None:intergenic |
| AAGGAACAATATGTTTGAAT+TGG | 0.368153 | 8.3:-29612466 | MS.gene99578:CDS |
| AAACAAGCATTACCTCCTTC+TGG | 0.369477 | 8.3:+29615635 | None:intergenic |
| CCGATAAATTGAATAAAATT+CGG | 0.371112 | 8.3:-29615738 | MS.gene99578:CDS |
| TCGTTCGGAGCTTGAACCTT+GGG | 0.372215 | 8.3:-29619488 | MS.gene99578:CDS |
| TTTCCAGACTCTTAGCTCAT+TGG | 0.373572 | 8.3:-29612822 | MS.gene99578:intron |
| TACAAAGAATTAGAAATAAA+GGG | 0.375102 | 8.3:-29614477 | MS.gene99578:CDS |
| GGCCGTGCGCGAGCTGATTC+GGG | 0.376938 | 8.3:+29624716 | None:intergenic |
| ATGCTATGTTGTTTGTGTTT+GGG | 0.390857 | 8.3:-29624477 | MS.gene99578:CDS |
| TGCGCGAGCTGATTCGGGTT+GGG | 0.391273 | 8.3:+29624721 | None:intergenic |
| GAGGAGAGGGAAAAGTTAAA+AGG | 0.394844 | 8.3:-29614928 | MS.gene99578:CDS |
| AAAGTTAAAGGAAATGTATC+AGG | 0.396369 | 8.3:-29613853 | MS.gene99578:intron |
| ATATATTCCTTCTATTTGTC+CGG | 0.397561 | 8.3:+29618207 | None:intergenic |
| GGACAAATAGAAGGAATATA+TGG | 0.402863 | 8.3:-29618205 | MS.gene99578:CDS |
| CAGAATTCAGGTAGATTTAG+TGG | 0.406402 | 8.3:-29614323 | MS.gene99578:CDS |
| ATGCTCAATTCATAATCATT+AGG | 0.409469 | 8.3:-29612587 | MS.gene99578:intron |
| GTTATCAATGTAATACTTAG+AGG | 0.410514 | 8.3:+29623026 | None:intergenic |
| GAATATTTGGAAGATATCAT+TGG | 0.413793 | 8.3:-29622754 | MS.gene99578:CDS |
| ACAAGTGGGTGTTGCTAGCC+TGG | 0.420472 | 8.3:-29621160 | MS.gene99578:CDS |
| GAAACATCGGGATGTCTTAG+AGG | 0.423025 | 8.3:-29614667 | MS.gene99578:CDS |
| GATGCGATTGAATAAAGTTT+CGG | 0.423281 | 8.3:-29624324 | MS.gene99578:CDS |
| CAATATCAACAGCATGTTCT+GGG | 0.423763 | 8.3:-29616866 | MS.gene99578:CDS |
| TGAGCTTGCTAAATTTCGTT+CGG | 0.429650 | 8.3:-29619503 | MS.gene99578:CDS |
| GTGGATTTGATGCAACTTCA+AGG | 0.430163 | 8.3:+29615493 | None:intergenic |
| ACGCGTTGGTCCCTTTCATA+AGG | 0.431212 | 8.3:-29624636 | MS.gene99578:intron |
| GAAGTGTAAAGAGGAATTCA+AGG | 0.434883 | 8.3:-29620790 | MS.gene99578:CDS |
| GTCATGAAAGCTAAGGAAAC+CGG | 0.435689 | 8.3:-29618226 | MS.gene99578:CDS |
| GAAGTTGACTAAGGGAATAG+AGG | 0.437158 | 8.3:-29614980 | MS.gene99578:CDS |
| TAGGCTTCACGCATAGCATA+TGG | 0.440314 | 8.3:-29615937 | MS.gene99578:CDS |
| ACAAATCTCATGCACCCTTC+TGG | 0.441204 | 8.3:+29612364 | None:intergenic |
| GACATACTGCTCAAGATGCT+TGG | 0.443139 | 8.3:+29614410 | None:intergenic |
| ATTCAAGGAGTTTGAGAGGC+AGG | 0.445220 | 8.3:-29620775 | MS.gene99578:CDS |
| GATGATGAAGAAGTTGACTA+AGG | 0.445972 | 8.3:-29614989 | MS.gene99578:CDS |
| TTCAAGAATGTATCTATCGT+TGG | 0.456233 | 8.3:-29612636 | MS.gene99578:CDS |
| CATCAGAATTTGGATAGTGC+TGG | 0.460340 | 8.3:-29624278 | MS.gene99578:CDS |
| GAATTGGCTGATCGACTTGT+TGG | 0.461151 | 8.3:-29612450 | MS.gene99578:CDS |
| TTGGGCATTATGTGAAAGAT+AGG | 0.461852 | 8.3:-29612617 | MS.gene99578:CDS |
| AAGATCCGGTGTGGTGCAAA+TGG | 0.462167 | 8.3:-29621399 | MS.gene99578:CDS |
| GAAATCACAGAGAGTTCTAA+AGG | 0.466045 | 8.3:-29620482 | MS.gene99578:intron |
| TCTTTAGATCCTTTCTCTGA+AGG | 0.467200 | 8.3:-29613031 | MS.gene99578:CDS |
| CGATCAAGCTCGTTCTCTTG+TGG | 0.467212 | 8.3:+29615474 | None:intergenic |
| TAGGCTCTTCATCCAAGAAA+TGG | 0.467715 | 8.3:-29624693 | MS.gene99578:CDS |
| AAGGAAACCGGACAAATAGA+AGG | 0.468506 | 8.3:-29618214 | MS.gene99578:CDS |
| TTTGTATGGCTGCAGGAAGA+TGG | 0.468661 | 8.3:-29623111 | MS.gene99578:intron |
| ATCAGAATTTGGATAGTGCT+GGG | 0.470974 | 8.3:-29624277 | MS.gene99578:CDS |
| TTCGTTCGGAGCTTGAACCT+TGG | 0.472275 | 8.3:-29619489 | MS.gene99578:CDS |
| ATTCGAGCTACAAATGTGTC+TGG | 0.474855 | 8.3:-29615802 | MS.gene99578:CDS |
| GTGCGCGAGCTGATTCGGGT+TGG | 0.474944 | 8.3:+29624720 | None:intergenic |
| TCAAGAATGTATCTATCGTT+GGG | 0.477676 | 8.3:-29612635 | MS.gene99578:CDS |
| TAACTTATCGGGTGGTGAAA+AGG | 0.478785 | 8.3:-29612960 | MS.gene99578:intron |
| TTCCAAGACCTTCTCCTCAT+CGG | 0.480564 | 8.3:+29620505 | None:intergenic |
| TTACTCTTTCCACTTCCATT+CGG | 0.482708 | 8.3:+29624508 | None:intergenic |
| TAAAATTCGGCAAAGAATGA+TGG | 0.483484 | 8.3:-29615725 | MS.gene99578:CDS |
| TGAGAAAGAAAGAGACAGCT+TGG | 0.485868 | 8.3:-29621366 | MS.gene99578:CDS |
| AATATTTGGAAGATATCATT+GGG | 0.487246 | 8.3:-29622753 | MS.gene99578:CDS |
| GACCGATGAGGAGAAGGTCT+TGG | 0.487612 | 8.3:-29620507 | MS.gene99578:CDS |
| AATACAACGCCTTCAGAGAA+AGG | 0.492035 | 8.3:+29613022 | None:intergenic |
| GCCTACGCCGCTTTATGTAA+TGG | 0.492694 | 8.3:-29612771 | MS.gene99578:CDS |
| GAACTGACTTTGTGATTACA+AGG | 0.493218 | 8.3:-29623068 | MS.gene99578:CDS |
| GTAGATGATTAAGAAACATC+GGG | 0.495632 | 8.3:-29614679 | MS.gene99578:intron |
| CTCAGAGATCAATCGTCATA+AGG | 0.496109 | 8.3:-29615034 | MS.gene99578:CDS |
| ACCTTGTTCAAGAGGAATCA+GGG | 0.496727 | 8.3:+29618321 | None:intergenic |
| AAGCAATGCTACCGTTTCAC+AGG | 0.504976 | 8.3:+29614234 | None:intergenic |
| TCTCAAGGACCTCATGATGA+AGG | 0.509105 | 8.3:-29622784 | MS.gene99578:CDS |
| TGAAGTTACCAAGAAATTGA+AGG | 0.512886 | 8.3:-29622986 | MS.gene99578:CDS |
| GCTGGAGGATAAAGCCGAAA+AGG | 0.514066 | 8.3:-29620703 | MS.gene99578:intron |
| ACGCTAGCTGTTGATGATAC+AGG | 0.514167 | 8.3:-29621201 | MS.gene99578:CDS |
| ATTAAAATCTCAGAAGTTGA+AGG | 0.514578 | 8.3:-29615165 | MS.gene99578:CDS |
| AATCGAAGCTCTTGTGAAAG+AGG | 0.514771 | 8.3:-29620594 | MS.gene99578:CDS |
| CACAAGAGAACGAGCTTGAT+CGG | 0.514810 | 8.3:-29615473 | MS.gene99578:CDS |
| GAATCAGAAGATCAAGAAGC+TGG | 0.515148 | 8.3:-29620721 | MS.gene99578:CDS |
| AGAAGGAATATATGGACGGA+TGG | 0.516051 | 8.3:-29618197 | MS.gene99578:CDS |
| GGTGACCTAGGTGCCATTGA+TGG | 0.517481 | 8.3:-29618175 | MS.gene99578:intron |
| AACATGATGAATTGAGAAAG+AGG | 0.518114 | 8.3:-29614000 | MS.gene99578:CDS |
| TCTAAATCAAACCTTATGAA+AGG | 0.519150 | 8.3:+29624625 | None:intergenic |
| TGTTTGCAGATGATTACCCT+TGG | 0.519847 | 8.3:-29613082 | MS.gene99578:intron |
| TTTGGATTCAGAGAAGAGCC+AGG | 0.520286 | 8.3:-29618266 | MS.gene99578:CDS |
| TAAGCCCAAAGGTGGGAAGA+TGG | 0.520466 | 8.3:-29615833 | MS.gene99578:CDS |
| TTAGACCACCAAAGAAAAGC+TGG | 0.523255 | 8.3:-29612994 | MS.gene99578:CDS |
| CTAAATCAAACCTTATGAAA+GGG | 0.523395 | 8.3:+29624626 | None:intergenic |
| TCTCTAAATGAAAGAAGATC+CGG | 0.523934 | 8.3:-29621413 | MS.gene99578:CDS |
| TGTCTAGCACCTTGTTCAAG+AGG | 0.526884 | 8.3:+29618313 | None:intergenic |
| AAGAAAATCTTAAGGCAGAA+AGG | 0.528175 | 8.3:-29621137 | MS.gene99578:intron |
| TGCTGCTTGGGAAATGGAGC+TGG | 0.531170 | 8.3:-29615665 | MS.gene99578:CDS |
| CTTCAGTGAAGTTACTTGAA+CGG | 0.531437 | 8.3:+29623004 | None:intergenic |
| CAGAAGAAAATAGAGAATGC+TGG | 0.531728 | 8.3:-29615197 | MS.gene99578:CDS |
| TTGCTTCGTAGAGAGAATCT+TGG | 0.533342 | 8.3:-29616792 | MS.gene99578:CDS |
| GTTTGGGAAACGAGCCAAGC+AGG | 0.533975 | 8.3:-29624461 | MS.gene99578:intron |
| GTGGTTGGACCGAATGGAAG+TGG | 0.534488 | 8.3:-29624517 | MS.gene99578:CDS |
| GGGACCAACGCGTTGTTCGC+CGG | 0.534583 | 8.3:+29624646 | None:intergenic |
| ATTTCATCCATTACATAAAG+CGG | 0.535065 | 8.3:+29612764 | None:intergenic |
| TGGATTTGATGCAACTTCAA+GGG | 0.536894 | 8.3:+29615494 | None:intergenic |
| ATGGTGGAAACAATGAGTTT+CGG | 0.537319 | 8.3:-29615918 | MS.gene99578:CDS |
| GGGAATAGAGGAGTCAAAGA+AGG | 0.538158 | 8.3:-29614968 | MS.gene99578:CDS |
| AAGCCCAAAGGTGGGAAGAT+GGG | 0.538504 | 8.3:-29615832 | MS.gene99578:CDS |
| CGAGTTCTGCATCACCTCCA+AGG | 0.538858 | 8.3:+29613065 | None:intergenic |
| GAAGTTACCAAGAAATTGAA+GGG | 0.541271 | 8.3:-29622985 | MS.gene99578:CDS |
| AGCTGTTGCAAGTGCTGAGA+GGG | 0.544491 | 8.3:-29615776 | MS.gene99578:CDS |
| TCGGCTGTGGTTGGACCGAA+TGG | 0.547604 | 8.3:-29624523 | MS.gene99578:CDS |
| ACCAAGAAATTGAAGGGGAA+AGG | 0.549395 | 8.3:-29622979 | MS.gene99578:CDS |
| TAGCCTGGAAGAAAATCTTA+AGG | 0.550068 | 8.3:-29621145 | MS.gene99578:CDS |
| AACCCGAATCAGCTCGCGCA+CGG | 0.550312 | 8.3:-29624718 | MS.gene99578:CDS |
| GTTGTTGACCGATGAGGAGA+AGG | 0.553870 | 8.3:-29620513 | MS.gene99578:CDS |
| ATGACGATTGATCTCTGAGC+TGG | 0.557125 | 8.3:+29615038 | None:intergenic |
| TGATGCAGAACTCGAGCTTG+TGG | 0.557366 | 8.3:-29613056 | MS.gene99578:CDS |
| CAAGTATATTCAAATACAAG+AGG | 0.558851 | 8.3:-29620947 | MS.gene99578:intron |
| AATCTGGAACAATGAGTGGT+GGG | 0.559306 | 8.3:-29615861 | MS.gene99578:CDS |
| GAAAGAAAGAGACAGCTTGG+AGG | 0.559426 | 8.3:-29621363 | MS.gene99578:intron |
| AGGAATTCAAGGAGTTTGAG+AGG | 0.559948 | 8.3:-29620779 | MS.gene99578:CDS |
| AGGAGCTAGATAATGATATG+AGG | 0.560472 | 8.3:-29620812 | MS.gene99578:CDS |
| AAAAGATTTGATCGAGCACA+AGG | 0.561369 | 8.3:-29619464 | MS.gene99578:CDS |
| GGTGCTCGTGAAGCCTTTGA+AGG | 0.561533 | 8.3:-29618568 | MS.gene99578:CDS |
| AGTGCTGAGAGGGAATTGTC+TGG | 0.562284 | 8.3:-29615766 | MS.gene99578:CDS |
| GGACGAATTGCGTGCATCTG+AGG | 0.563169 | 8.3:-29614607 | MS.gene99578:intron |
| TCGAAACACAGTTGTTGCTA+AGG | 0.564507 | 8.3:-29616244 | MS.gene99578:CDS |
| TGTAGATGATTAAGAAACAT+CGG | 0.565558 | 8.3:-29614680 | MS.gene99578:intron |
| ATGATGAAGAAGTTGACTAA+GGG | 0.567751 | 8.3:-29614988 | MS.gene99578:CDS |
| TTTGTTGAAATGGCAAGAGA+AGG | 0.569868 | 8.3:-29621229 | MS.gene99578:CDS |
| TCAGAAACCTATTATTGTCA+AGG | 0.570261 | 8.3:+29622950 | None:intergenic |
| AGACTGGATGAGTTTATGGA+AGG | 0.571874 | 8.3:-29613894 | MS.gene99578:CDS |
| TTGCAGATGATTACCCTTGG+AGG | 0.574357 | 8.3:-29613079 | MS.gene99578:intron |
| AAGAACGGTTAGCCGAGGAG+AGG | 0.575109 | 8.3:-29614942 | MS.gene99578:CDS |
| CATAAGGTTCAAATAGAGAC+GGG | 0.577425 | 8.3:-29615018 | MS.gene99578:CDS |
| TGATATGAGGAAGTGTAAAG+AGG | 0.582492 | 8.3:-29620799 | MS.gene99578:CDS |
| AAAAGCAGTCATGAAAGCTA+AGG | 0.583042 | 8.3:-29618233 | MS.gene99578:CDS |
| ATCTGGAACAATGAGTGGTG+GGG | 0.584191 | 8.3:-29615860 | MS.gene99578:CDS |
| AGAACTTAATGCAGTCACTC+AGG | 0.584296 | 8.3:-29614044 | MS.gene99578:CDS |
| TCTGGAACAATGAGTGGTGG+GGG | 0.588327 | 8.3:-29615859 | MS.gene99578:CDS |
| ATCGAAGCTCTTGTGAAAGA+GGG | 0.590975 | 8.3:-29620593 | MS.gene99578:CDS |
| GAAGGAATATATGGACGGAT+GGG | 0.596820 | 8.3:-29618196 | MS.gene99578:CDS |
| TTATGTGAAAGATAGGACTA+AGG | 0.597269 | 8.3:-29612610 | MS.gene99578:CDS |
| TGATATGATACCAAAACTTG+AGG | 0.598965 | 8.3:-29620558 | MS.gene99578:CDS |
| GGATGCTGTGAAAGAATACC+AGG | 0.599014 | 8.3:-29615704 | MS.gene99578:CDS |
| AGAACGGTTAGCCGAGGAGA+GGG | 0.600987 | 8.3:-29614941 | MS.gene99578:CDS |
| TGTGAAAGAATACCAGGAAG+TGG | 0.601366 | 8.3:-29615698 | MS.gene99578:CDS |
| TCCATTACATAAAGCGGCGT+AGG | 0.602167 | 8.3:+29612770 | None:intergenic |
| TCTAGAAAGCCTTCATCATG+AGG | 0.602664 | 8.3:+29622775 | None:intergenic |
| TGTTGCTAAGGATCTTGACC+AGG | 0.603029 | 8.3:-29616232 | MS.gene99578:intron |
| TCATAAGGTTCAAATAGAGA+CGG | 0.603169 | 8.3:-29615019 | MS.gene99578:CDS |
| ATTTCTTGGATGAAGAGCCT+AGG | 0.603556 | 8.3:+29624695 | None:intergenic |
| GCCCTGATTCCTCTTGAACA+AGG | 0.604308 | 8.3:-29618322 | MS.gene99578:CDS |
| GAATTAGAAATAAAGGGGAA+AGG | 0.604623 | 8.3:-29614471 | MS.gene99578:CDS |
| CCTTACCATCAATGGCACCT+AGG | 0.605795 | 8.3:+29618170 | None:intergenic |
| GGCCAAGCTTCTAAATGAGA+AGG | 0.605845 | 8.3:-29619416 | MS.gene99578:intron |
| TTAATAGCAAGTACCTAAAG+CGG | 0.606561 | 8.3:+29612736 | None:intergenic |
| TGATATCAGGTATCGCAAGA+AGG | 0.607335 | 8.3:-29614092 | MS.gene99578:intron |
| CGAGCACAAGGGAAAGCTTG+AGG | 0.608280 | 8.3:-29619452 | MS.gene99578:CDS |
| TATGGACGGATGGGTGACCT+AGG | 0.608653 | 8.3:-29618187 | MS.gene99578:CDS |
| CTTATGAAACCAAAATCTCA+AGG | 0.608826 | 8.3:-29622799 | MS.gene99578:CDS |
| ACAAAGAATTAGAAATAAAG+GGG | 0.610292 | 8.3:-29614476 | MS.gene99578:CDS |
| GAGTTCTGCATCACCTCCAA+GGG | 0.610657 | 8.3:+29613066 | None:intergenic |
| TGGGCTTGACTATATTGTCG+TGG | 0.612683 | 8.3:-29616847 | MS.gene99578:CDS |
| AAATCTGGAACAATGAGTGG+TGG | 0.621887 | 8.3:-29615862 | MS.gene99578:CDS |
| GAGATTAATAGACTTACTGA+CGG | 0.624107 | 8.3:-29615411 | MS.gene99578:CDS |
| TTGGATTCAGAGAAGAGCCA+GGG | 0.629360 | 8.3:-29618265 | MS.gene99578:CDS |
| CTTGACCATTTGCACCACAC+CGG | 0.629875 | 8.3:+29621394 | None:intergenic |
| GAATTATGAGAAAACAGAAG+AGG | 0.630045 | 8.3:-29614863 | MS.gene99578:intron |
| AATATTGCTAACTTATCGGG+TGG | 0.632240 | 8.3:-29612968 | MS.gene99578:CDS |
| AAGAGCGTAAGCACTCCAGA+GGG | 0.632281 | 8.3:-29616336 | MS.gene99578:CDS |
| TGAACAAGGTGCTAGACAGA+AGG | 0.639390 | 8.3:-29618308 | MS.gene99578:CDS |
| TCAGAATTTGGATAGTGCTG+GGG | 0.640318 | 8.3:-29624276 | MS.gene99578:CDS |
| GCAAAAGTTGTTGACCGATG+AGG | 0.642387 | 8.3:-29620519 | MS.gene99578:CDS |
| TACGCCGGCGAACAACGCGT+TGG | 0.643664 | 8.3:-29624650 | MS.gene99578:CDS |
| TCTACGAAGCAACTCAACAC+AGG | 0.648251 | 8.3:+29616803 | None:intergenic |
| TGGCAAACGACAAAACTGCA+CGG | 0.650479 | 8.3:+29612384 | None:intergenic |
| AAATAGAAGGAATATATGGA+CGG | 0.651232 | 8.3:-29618201 | MS.gene99578:CDS |
| CTAGCTGTTGATGATACAGG+TGG | 0.652167 | 8.3:-29621198 | MS.gene99578:CDS |
| GAGCGTAAGCACTCCAGAGG+GGG | 0.656730 | 8.3:-29616334 | MS.gene99578:CDS |
| GCTTCACGCATAGCATATGG+TGG | 0.658385 | 8.3:-29615934 | MS.gene99578:CDS |
| GGGGAAGTAAGCCCAAAGGT+GGG | 0.659572 | 8.3:-29615840 | MS.gene99578:CDS |
| GCTGGCTAAAAGCCAGAAGG+AGG | 0.660136 | 8.3:-29615647 | MS.gene99578:intron |
| AAGCTGTTGCAAGTGCTGAG+AGG | 0.665255 | 8.3:-29615777 | MS.gene99578:CDS |
| CGGAACTTCAAATCTTACGC+CGG | 0.665861 | 8.3:-29624665 | MS.gene99578:CDS |
| AGCGTCAGAAGCTCACAGAG+TGG | 0.670575 | 8.3:-29618449 | MS.gene99578:CDS |
| AACTGACTTTGTGATTACAA+GGG | 0.671077 | 8.3:-29623067 | MS.gene99578:CDS |
| GGAGCTGGCTAAAAGCCAGA+AGG | 0.671461 | 8.3:-29615650 | MS.gene99578:CDS |
| GCTTGAGGTTGCATCTAGCG+AGG | 0.676784 | 8.3:-29619437 | MS.gene99578:CDS |
| TCATCCAAGAAATGGTCATG+CGG | 0.677168 | 8.3:-29624685 | MS.gene99578:CDS |
| AAAGAGCGTAAGCACTCCAG+AGG | 0.677800 | 8.3:-29616337 | MS.gene99578:CDS |
| AAGAAAATAGAGAATGCTGG+AGG | 0.685045 | 8.3:-29615194 | MS.gene99578:CDS |
| AAGTTACCAAGAAATTGAAG+GGG | 0.694289 | 8.3:-29622984 | MS.gene99578:CDS |
| TCAGAAGATCAAGAAGCTGG+AGG | 0.695482 | 8.3:-29620718 | MS.gene99578:CDS |
| AAAGATTTGATCGAGCACAA+GGG | 0.703791 | 8.3:-29619463 | MS.gene99578:CDS |
| AAATGAAAGAAGATCCGGTG+TGG | 0.714159 | 8.3:-29621408 | MS.gene99578:CDS |
| AAAATGGATGAGTTACAAGT+GGG | 0.715729 | 8.3:-29621174 | MS.gene99578:CDS |
| GAAATTTAGCAAGCTCAGAG+CGG | 0.720188 | 8.3:+29619509 | None:intergenic |
| ATGATGAATTGAGAAAGAGG+AGG | 0.726968 | 8.3:-29613997 | MS.gene99578:intron |
| AGAGCGTAAGCACTCCAGAG+GGG | 0.738204 | 8.3:-29616335 | MS.gene99578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29612371 | 29624750 | 29612371 | ID=MS.gene99578 |
| chr8.3 | mRNA | 29612371 | 29624750 | 29612371 | ID=MS.gene99578.t1;Parent=MS.gene99578 |
| chr8.3 | exon | 29624637 | 29624750 | 29624637 | ID=MS.gene99578.t1.exon1;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29624637 | 29624750 | 29624637 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29624462 | 29624551 | 29624462 | ID=MS.gene99578.t1.exon2;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29624462 | 29624551 | 29624462 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29624244 | 29624345 | 29624244 | ID=MS.gene99578.t1.exon3;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29624244 | 29624345 | 29624244 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29622942 | 29623118 | 29622942 | ID=MS.gene99578.t1.exon4;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29622942 | 29623118 | 29622942 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29622712 | 29622842 | 29622712 | ID=MS.gene99578.t1.exon5;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29622712 | 29622842 | 29622712 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29621364 | 29621442 | 29621364 | ID=MS.gene99578.t1.exon6;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29621364 | 29621442 | 29621364 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29621138 | 29621295 | 29621138 | ID=MS.gene99578.t1.exon7;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29621138 | 29621295 | 29621138 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29620948 | 29621023 | 29620948 | ID=MS.gene99578.t1.exon8;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29620948 | 29621023 | 29620948 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29620704 | 29620832 | 29620704 | ID=MS.gene99578.t1.exon9;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29620704 | 29620832 | 29620704 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29620483 | 29620627 | 29620483 | ID=MS.gene99578.t1.exon10;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29620483 | 29620627 | 29620483 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29619417 | 29619547 | 29619417 | ID=MS.gene99578.t1.exon11;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29619417 | 29619547 | 29619417 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29618444 | 29618596 | 29618444 | ID=MS.gene99578.t1.exon12;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29618444 | 29618596 | 29618444 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29618176 | 29618365 | 29618176 | ID=MS.gene99578.t1.exon13;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29618176 | 29618365 | 29618176 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29616770 | 29616903 | 29616770 | ID=MS.gene99578.t1.exon14;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29616770 | 29616903 | 29616770 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29616233 | 29616391 | 29616233 | ID=MS.gene99578.t1.exon15;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29616233 | 29616391 | 29616233 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29615648 | 29615956 | 29615648 | ID=MS.gene99578.t1.exon16;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29615648 | 29615956 | 29615648 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29615389 | 29615565 | 29615389 | ID=MS.gene99578.t1.exon17;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29615389 | 29615565 | 29615389 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29615148 | 29615231 | 29615148 | ID=MS.gene99578.t1.exon18;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29615148 | 29615231 | 29615148 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29614864 | 29615073 | 29614864 | ID=MS.gene99578.t1.exon19;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29614864 | 29615073 | 29614864 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29614608 | 29614697 | 29614608 | ID=MS.gene99578.t1.exon20;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29614608 | 29614697 | 29614608 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29614417 | 29614538 | 29614417 | ID=MS.gene99578.t1.exon21;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29614417 | 29614538 | 29614417 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29614187 | 29614342 | 29614187 | ID=MS.gene99578.t1.exon22;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29614187 | 29614342 | 29614187 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29613998 | 29614105 | 29613998 | ID=MS.gene99578.t1.exon23;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29613998 | 29614105 | 29613998 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29613854 | 29613914 | 29613854 | ID=MS.gene99578.t1.exon24;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29613854 | 29613914 | 29613854 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29612961 | 29613095 | 29612961 | ID=MS.gene99578.t1.exon25;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29612961 | 29613095 | 29612961 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29612750 | 29612837 | 29612750 | ID=MS.gene99578.t1.exon26;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29612750 | 29612837 | 29612750 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29612588 | 29612660 | 29612588 | ID=MS.gene99578.t1.exon27;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29612588 | 29612660 | 29612588 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| chr8.3 | exon | 29612371 | 29612491 | 29612371 | ID=MS.gene99578.t1.exon28;Parent=MS.gene99578.t1 |
| chr8.3 | CDS | 29612371 | 29612491 | 29612371 | ID=cds.MS.gene99578.t1;Parent=MS.gene99578.t1 |
| Gene Sequence |
| Protein sequence |
