AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047971.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047971.01.T01 MTR_8g467450 86.813 91 12 0 158 248 5 95 1.48e-53 170
MsG0080047971.01.T01 MTR_8g059025 73.626 91 24 0 158 248 5 95 7.11e-46 150
MsG0080047971.01.T01 MTR_5g078250 68.478 92 29 0 157 248 4 95 7.54e-39 141
MsG0080047971.01.T01 MTR_8g062030 67.059 85 28 0 164 248 11 95 3.53e-35 132
MsG0080047971.01.T01 MTR_1g075850 63.736 91 27 1 158 248 5 89 1.41e-34 130
MsG0080047971.01.T01 MTR_6g051890 58.242 91 38 0 158 248 9 99 1.10e-31 120
MsG0080047971.01.T01 MTR_8g469510 67.568 74 24 0 175 248 5 78 7.10e-30 107
MsG0080047971.01.T01 MTR_5g070620 60.811 74 29 0 158 231 30 103 8.40e-30 107
MsG0080047971.01.T01 MTR_6g052340 56.522 92 32 2 159 248 6 91 1.04e-25 105
MsG0080047971.01.T01 MTR_3g023970 38.068 176 42 2 1 109 174 349 3.42e-21 92.4
MsG0080047971.01.T01 MTR_2g048560 43.182 88 50 0 161 248 8 95 1.65e-19 87.4
MsG0080047971.01.T01 MTR_4g036240 38.043 92 57 0 155 246 2 93 4.86e-18 83.2
MsG0080047971.01.T01 MTR_6g465570 40.449 89 53 0 160 248 3 91 2.53e-17 77.4
MsG0080047971.01.T01 MTR_8g479260 38.462 91 56 0 158 248 7 97 2.71e-17 81.3
MsG0080047971.01.T01 MTR_2g008650 38.462 91 56 0 158 248 7 97 2.87e-17 80.9
MsG0080047971.01.T01 MTR_2g054710 37.363 91 57 0 158 248 7 97 3.25e-17 79.0
MsG0080047971.01.T01 MTR_3g095950 40.476 84 50 0 161 244 8 91 5.96e-17 76.3
MsG0080047971.01.T01 MTR_7g089660 40.476 84 50 0 161 244 8 91 9.99e-17 77.0
MsG0080047971.01.T01 MTR_3g116750 40.476 84 50 0 161 244 8 91 1.28e-16 75.5
MsG0080047971.01.T01 MTR_5g032920 38.636 88 54 0 161 248 8 95 3.89e-16 72.0
MsG0080047971.01.T01 MTR_7g117425 44.444 90 44 1 159 248 6 89 5.34e-16 75.5
MsG0080047971.01.T01 MTR_4g471610 39.286 84 51 0 161 244 8 91 7.45e-16 73.6
MsG0080047971.01.T01 MTR_3g078440 39.286 84 51 0 161 244 8 91 7.45e-16 73.6
MsG0080047971.01.T01 MTR_8g036090 39.286 84 51 0 161 244 8 91 7.45e-16 73.6
MsG0080047971.01.T01 MTR_3g056270 35.106 94 61 0 155 248 2 95 7.89e-16 77.0
MsG0080047971.01.T01 MTR_3g056240 35.106 94 61 0 155 248 2 95 9.16e-16 75.9
MsG0080047971.01.T01 MTR_1g036740 39.286 84 51 0 161 244 8 91 1.07e-15 72.8
MsG0080047971.01.T01 MTR_8g096680 39.286 84 51 0 161 244 8 91 1.07e-15 72.8
MsG0080047971.01.T01 MTR_7g093810 39.286 84 51 0 161 244 8 91 1.23e-15 72.8
MsG0080047971.01.T01 MTR_6g039240 39.286 84 51 0 161 244 8 91 1.84e-15 74.3
MsG0080047971.01.T01 MTR_8g463820 39.286 84 51 0 161 244 8 91 1.96e-15 74.3
MsG0080047971.01.T01 MTR_8g088810 40.476 84 50 0 161 244 8 91 2.59e-15 74.3
MsG0080047971.01.T01 MTR_1g094230 39.286 84 51 0 161 244 8 91 2.70e-15 74.3
MsG0080047971.01.T01 MTR_5g060920 36.364 88 56 0 161 248 10 97 1.17e-14 68.6
MsG0080047971.01.T01 MTR_1788s0010 38.554 83 51 0 162 244 9 91 1.63e-14 68.9
MsG0080047971.01.T01 MTR_2g032570 36.905 84 53 0 161 244 8 91 3.49e-14 68.9
MsG0080047971.01.T01 MTR_2g062200 61.538 52 20 0 197 248 1 52 7.67e-14 68.2
MsG0080047971.01.T01 MTR_3g032190 36.364 88 56 0 161 248 8 95 7.95e-14 66.2
MsG0080047971.01.T01 MTR_5g055160 36.905 84 53 0 161 244 8 91 1.56e-13 68.9
MsG0080047971.01.T01 MTR_2g058350 39.326 89 54 0 158 246 5 93 5.09e-13 68.2
MsG0080047971.01.T01 MTR_6g069230 43.750 80 45 0 167 246 110 189 9.00e-13 67.4
MsG0080047971.01.T01 MTR_5g085220 36.905 84 53 0 161 244 8 91 9.96e-13 64.7
MsG0080047971.01.T01 MTR_7g051400 34.483 87 57 0 162 248 9 95 1.65e-12 67.0
MsG0080047971.01.T01 MTR_1g105785 34.091 88 58 0 161 248 8 95 5.55e-12 65.5
MsG0080047971.01.T01 MTR_3g452170 34.783 92 60 0 157 248 4 95 5.84e-12 65.1
MsG0080047971.01.T01 MTR_4g028320 41.429 70 41 0 175 244 3 72 8.91e-12 62.0
MsG0080047971.01.T01 MTR_7g110100 33.696 92 61 0 157 248 4 95 2.04e-11 63.9
MsG0080047971.01.T01 MTR_1g051235 32.609 92 62 0 157 248 4 95 3.83e-11 60.5
MsG0080047971.01.T01 MTR_8g062060 36.782 87 55 0 161 247 8 94 6.86e-11 62.0
MsG0080047971.01.T01 MTR_3g044760 37.079 89 56 0 160 248 7 95 7.30e-11 62.0
MsG0080047971.01.T02 MTR_2g030230 98.214 112 2 0 13 124 169 280 2.01e-76 229
MsG0080047971.01.T02 MTR_8g088320 72.500 120 33 0 5 124 154 273 2.77e-59 185
MsG0080047971.01.T02 MTR_3g017500 55.357 112 50 0 13 124 210 321 1.09e-41 141
MsG0080047971.01.T02 MTR_3g017500 55.357 112 50 0 13 124 240 351 3.92e-41 140
MsG0080047971.01.T02 MTR_8g038400 53.571 112 52 0 13 124 207 318 1.64e-38 133
MsG0080047971.01.T02 MTR_2g027100 54.255 94 43 0 14 107 3 96 2.11e-29 104
MsG0080047971.01.T02 MTR_8g107340 43.810 105 58 1 5 108 9 113 2.95e-27 99.8
MsG0080047971.01.T02 MTR_6g069470 44.954 109 59 1 1 108 1 109 2.78e-26 97.1
MsG0080047971.01.T02 MTR_3g067585 45.745 94 51 0 15 108 4 97 7.77e-26 95.5
MsG0080047971.01.T02 MTR_1g031650 48.936 94 47 1 16 108 6 99 2.18e-25 94.4
MsG0080047971.01.T02 MTR_2g011590 41.489 94 55 0 15 108 3 96 2.66e-24 91.7
MsG0080047971.01.T02 MTR_4g084280 40.000 100 59 1 15 113 4 103 2.12e-21 84.3
MsG0080047971.01.T02 MTR_1g008950 37.363 91 55 2 17 105 4 94 9.25e-14 63.5
MsG0080047971.01.T02 MTR_1g031650 47.541 61 32 0 48 108 2 62 2.16e-12 60.1
MsG0080047971.01.T02 MTR_8g032300 37.363 91 55 2 17 105 4 94 1.09e-11 58.5
MsG0080047971.01.T02 MTR_2g027360 39.286 84 50 1 19 101 3 86 5.09e-11 58.9
MsG0080047971.01.T02 MTR_8g032320 35.165 91 57 2 17 105 4 94 7.00e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047971.01.T01 AT2G05642 40.260 77 46 0 172 248 19 95 9.59e-14 70.9
MsG0080047971.01.T02 AT4G05330 76.786 112 26 0 13 124 141 252 1.52e-58 183
MsG0080047971.01.T02 AT4G05330 76.786 112 26 0 13 124 176 287 2.69e-58 183
MsG0080047971.01.T02 AT4G05330 76.786 112 26 0 13 124 176 287 2.69e-58 183
MsG0080047971.01.T02 AT4G21160 74.107 112 29 0 13 124 177 288 2.65e-56 178
MsG0080047971.01.T02 AT4G21160 74.107 112 29 0 13 124 177 288 2.65e-56 178
MsG0080047971.01.T02 AT4G21160 74.107 112 29 0 13 124 177 288 2.65e-56 178
MsG0080047971.01.T02 AT4G21160 74.107 112 29 0 13 124 177 288 2.65e-56 178
MsG0080047971.01.T02 AT3G07940 56.757 111 48 0 13 123 225 335 2.33e-40 138
MsG0080047971.01.T02 AT1G73580 50.000 94 47 0 15 108 7 100 4.02e-27 99.0
MsG0080047971.01.T02 AT5G47710 49.462 93 47 0 14 106 3 95 4.11e-27 99.0
MsG0080047971.01.T02 AT5G47710 49.462 93 47 0 14 106 3 95 4.11e-27 99.0
MsG0080047971.01.T02 AT5G47710 49.462 93 47 0 14 106 3 95 4.11e-27 99.0
MsG0080047971.01.T02 AT5G47710 49.462 93 47 0 14 106 3 95 4.11e-27 99.0
MsG0080047971.01.T02 AT2G01540 46.237 93 50 0 16 108 6 98 4.78e-27 99.0
MsG0080047971.01.T02 AT1G70790 45.652 92 50 0 16 107 6 97 1.55e-25 95.1
MsG0080047971.01.T02 AT1G70790 45.652 92 50 0 16 107 6 97 1.55e-25 95.1
MsG0080047971.01.T02 AT1G70790 45.652 92 50 0 16 107 6 97 1.55e-25 95.1
MsG0080047971.01.T02 AT3G17980 43.158 95 54 0 14 108 15 109 4.98e-25 94.0
MsG0080047971.01.T02 AT1G70800 44.565 92 51 0 14 105 12 103 1.75e-24 92.4
MsG0080047971.01.T02 AT5G37740 43.617 94 53 0 15 108 4 97 2.59e-24 91.7
MsG0080047971.01.T02 AT1G66360 49.398 83 42 0 15 97 4 86 1.91e-23 89.7
MsG0080047971.01.T02 AT1G48590 40.426 94 56 0 15 108 9 102 2.91e-23 89.0
MsG0080047971.01.T02 AT1G48590 40.426 94 56 0 15 108 9 102 2.91e-23 89.0
MsG0080047971.01.T02 AT1G70810 42.391 92 53 0 14 105 3 94 3.94e-23 88.6
MsG0080047971.01.T02 AT1G48590 40.426 94 56 0 15 108 40 133 5.62e-23 89.0
MsG0080047971.01.T02 AT5G37740 39.423 104 53 1 15 108 4 107 4.31e-21 83.6
MsG0080047971.01.T02 AT1G23140 35.556 90 58 0 15 104 4 93 2.89e-19 78.6
MsG0080047971.01.T02 AT3G55470 38.144 97 53 4 16 105 3 99 9.23e-12 58.9
MsG0080047971.01.T02 AT1G70790 43.103 58 33 0 50 107 3 60 9.94e-12 58.5
MsG0080047971.01.T02 AT3G55470 38.542 96 53 4 16 105 3 98 1.07e-11 58.9
MsG0080047971.01.T02 AT1G03370 36.905 84 52 1 19 101 3 86 1.20e-11 60.8
MsG0080047971.01.T02 AT1G03370 36.905 84 52 1 19 101 3 86 1.37e-11 60.8

Find 85 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATCAGCTTGTATTAA+TGG 0.179403 contig155end:-10592 MsG0080047971.01.T01:intergenic
TCATTGGCTGCTGTTGTTCC+TGG 0.185294 contig155end:+10101 MsG0080047971.01.T01:CDS
ACTCCAAAGTCTATTGTAAA+AGG 0.191799 contig155end:+8539 MsG0080047971.01.T01:CDS
CCCTATTTGGAGTCTATAAA+TGG 0.197668 contig155end:+9953 MsG0080047971.01.T01:CDS
GAGGGAGGGGTGGCGATTTA+AGG 0.267073 contig155end:+10124 MsG0080047971.01.T01:CDS
ATTTCTCACTATAAACTTGT+AGG 0.297922 contig155end:-10750 MsG0080047971.01.T01:intergenic
TCCAAAGAGTTTGGCTGATC+AGG 0.299142 contig155end:-10188 MsG0080047971.01.T01:intergenic
CCCTGATCAGCCAAACTCTT+TGG 0.305724 contig155end:+10187 MsG0080047971.01.T01:CDS
TCTGCATCTTTGTCTTCATT+TGG 0.307985 contig155end:-10613 MsG0080047971.01.T01:intergenic
ATAATACAACTACTAGTTTC+TGG 0.317454 contig155end:-8467 MsG0080047971.01.T01:intergenic
TGGCTGAAGGAGATGCTTAC+AGG 0.317891 contig155end:+10519 MsG0080047971.01.T01:CDS
ACCATTTATAGACTCCAAAT+AGG 0.318864 contig155end:-9954 MsG0080047971.01.T01:intergenic
TTGAAGGTGAAAGTGATTAA+AGG 0.342926 contig155end:+10926 MsG0080047971.01.T01:three_prime_UTR
CATCTTTAATCATGTGATCT+TGG 0.353350 contig155end:-8190 MsG0080047971.01.T01:intergenic
CGTTGGGCAATGACTGATAT+TGG 0.358447 contig155end:+10863 MsG0080047971.01.T01:intron
GCTGTTGTTCCTGGGAGGGA+GGG 0.376128 contig155end:+10110 MsG0080047971.01.T01:CDS
AGTTTGGCTGATCAGGGTTC+AGG 0.389887 contig155end:-10181 MsG0080047971.01.T01:intergenic
AAGGTTAAGGTAGAATTCAT+TGG 0.393800 contig155end:+10899 MsG0080047971.01.T01:three_prime_UTR
AGCACCATCTCCAAAGAGTT+TGG 0.394893 contig155end:-10197 MsG0080047971.01.T01:intergenic
TGGTATTTGAGACAACTTCT+TGG 0.398844 contig155end:-8492 MsG0080047971.01.T01:intergenic
TAGACTCCAAATAGGGCAAA+AGG 0.399077 contig155end:-9946 MsG0080047971.01.T01:intergenic
GAAAATCAGCTTGTATTAAT+GGG 0.399509 contig155end:-10591 MsG0080047971.01.T01:intergenic
CATTGGCTGCTGTTGTTCCT+GGG 0.412627 contig155end:+10102 MsG0080047971.01.T01:CDS
AAGGTACCTCCCACATTCTA+AGG 0.418188 contig155end:-10154 MsG0080047971.01.T01:intergenic
TGCTGTTGTTCCTGGGAGGG+AGG 0.423012 contig155end:+10109 MsG0080047971.01.T01:CDS
CTGTTGTTCCTGGGAGGGAG+GGG 0.424006 contig155end:+10111 MsG0080047971.01.T01:CDS
CTGATATTGGTGGTGATAAC+AGG 0.432752 contig155end:+10876 MsG0080047971.01.T01:intron
TGGTGATAACAGGAAGGTTA+AGG 0.438464 contig155end:+10886 MsG0080047971.01.T01:intron
CAAGATCACATGATTAAAGA+TGG 0.440547 contig155end:+8191 MsG0080047971.01.T01:CDS
GGCTGCTGTTGTTCCTGGGA+GGG 0.442579 contig155end:+10106 MsG0080047971.01.T01:CDS
TACTATAGATATTGTAGTGT+TGG 0.446033 contig155end:-10809 MsG0080047971.01.T01:intergenic
ACAAAGATGCAGAAGATTGA+AGG 0.457149 contig155end:+10623 MsG0080047971.01.T01:three_prime_UTR
CTCAACGAAAGTCCATTGCT+TGG 0.461948 contig155end:-10656 MsG0080047971.01.T01:intergenic
AAAAGACAACCGTGGAACAT+AGG 0.468060 contig155end:-9911 MsG0080047971.01.T01:intergenic
GAAAGTCCATTGCTTGGAAT+AGG 0.475913 contig155end:-10650 MsG0080047971.01.T01:intergenic
GTGAAAATTAGCAGTATGCT+TGG 0.481508 contig155end:-10696 MsG0080047971.01.T01:intergenic
CTCCAAAGTCTATTGTAAAA+GGG 0.482064 contig155end:+8540 MsG0080047971.01.T01:CDS
AGAATTCATTGGAATGTTGA+AGG 0.483215 contig155end:+10910 MsG0080047971.01.T01:three_prime_UTR
CCATTTATAGACTCCAAATA+GGG 0.483329 contig155end:-9953 MsG0080047971.01.T01:intergenic
TTGTCTCAAATACCATCTCT+TGG 0.492819 contig155end:+8500 MsG0080047971.01.T01:CDS
CCAAGGTTCAAAACAACATA+CGG 0.494395 contig155end:-10986 MsG0080047971.01.T01:intergenic
GTATCTTCCACATTCATTTG+AGG 0.495575 contig155end:+9090 MsG0080047971.01.T01:CDS
CGAGCATACTATAAGTTGGC+TGG 0.506880 contig155end:-8752 MsG0080047971.01.T01:intergenic
CCAAAGAGTTTGGCTGATCA+GGG 0.507968 contig155end:-10187 MsG0080047971.01.T01:intergenic
GTGCGATAATAACCAACGTT+GGG 0.516041 contig155end:-10563 MsG0080047971.01.T01:intergenic
AAAGACAACCGTGGAACATA+GGG 0.519048 contig155end:-9910 MsG0080047971.01.T01:intergenic
AGACTCCAAATAGGGCAAAA+GGG 0.519647 contig155end:-9945 MsG0080047971.01.T01:intergenic
AATCGCCACCCCTCCCTCCC+AGG 0.524386 contig155end:-10119 MsG0080047971.01.T01:intergenic
TTGTTCCTGGGAGGGAGGGG+TGG 0.531077 contig155end:+10114 MsG0080047971.01.T01:CDS
AAGGCACAGATTTAGCCGTC+CGG 0.531193 contig155end:+10945 MsG0080047971.01.T01:three_prime_UTR
GCACGGACTTGAGTTTCAAT+CGG 0.532571 contig155end:-8780 MsG0080047971.01.T01:intergenic
TCAAGATTCATGCCACAGTT+CGG 0.532725 contig155end:+10465 MsG0080047971.01.T01:CDS
AGGGGTGGCGATTTAAGGTC+AGG 0.533313 contig155end:+10129 MsG0080047971.01.T01:CDS
AGGCACAGATTTAGCCGTCC+GGG 0.537870 contig155end:+10946 MsG0080047971.01.T01:three_prime_UTR
TGATCAGGGTTCAGGAAAGA+AGG 0.542341 contig155end:-10173 MsG0080047971.01.T01:intergenic
AGGTCAGGATCCTTAGAATG+TGG 0.548016 contig155end:+10144 MsG0080047971.01.T01:CDS
CTTCTTCAAATGAAACTACC+AGG 0.551026 contig155end:+8155 MsG0080047971.01.T01:CDS
GCAACGAGCATACTATAAGT+TGG 0.553544 contig155end:-8756 MsG0080047971.01.T01:intergenic
TTTCAGAAGAAGTTGGCTGA+AGG 0.569677 contig155end:+10506 MsG0080047971.01.T01:CDS
TATAAATCCGTCAGATGACA+TGG 0.571746 contig155end:+8223 MsG0080047971.01.T01:CDS
TGGCTGCTGTTGTTCCTGGG+AGG 0.572768 contig155end:+10105 MsG0080047971.01.T01:CDS
TGGTTGTGTTGCTCTGTCGT+TGG 0.580050 contig155end:+9973 MsG0080047971.01.T01:CDS
CACAGATTCCCTATGTTCCA+CGG 0.581072 contig155end:+9902 MsG0080047971.01.T01:intron
AAGATCACATGATTAAAGAT+GGG 0.581554 contig155end:+8192 MsG0080047971.01.T01:CDS
AGCAACCAACCTGTGTGCCA+AGG 0.586064 contig155end:-11003 MsG0080047971.01.T01:intergenic
TCAGCCAAACTCTTTGGAGA+TGG 0.586333 contig155end:+10193 MsG0080047971.01.T01:CDS
GGTTCTCCTATTCCAAGCAA+TGG 0.587997 contig155end:+10644 MsG0080047971.01.T01:three_prime_UTR
ATAATTACCTCAAATGAATG+TGG 0.599082 contig155end:-9097 MsG0080047971.01.T01:intergenic
GATGGTGCTTATCGATGAGA+AGG 0.603878 contig155end:+10211 MsG0080047971.01.T01:CDS
TATTGTAAAAGGGAAGATGA+AGG 0.609424 contig155end:+8550 MsG0080047971.01.T01:CDS
TGAACAAGAAGAAATAATGG+TGG 0.609583 contig155end:+9058 MsG0080047971.01.T01:CDS
CAACAACTGCTTCCGAACTG+TGG 0.623457 contig155end:-10477 MsG0080047971.01.T01:intergenic
GGTCAGGATCCTTAGAATGT+GGG 0.623609 contig155end:+10145 MsG0080047971.01.T01:CDS
CAAGGTTCAAAACAACATAC+GGG 0.633188 contig155end:-10985 MsG0080047971.01.T01:intergenic
ACAGTGTCCATGTCATCTGA+CGG 0.643895 contig155end:-8230 MsG0080047971.01.T01:intergenic
ACTTGACTTTATATCCCGGA+CGG 0.645865 contig155end:-10960 MsG0080047971.01.T01:intergenic
GGTCACTTGACTTTATATCC+CGG 0.647114 contig155end:-10964 MsG0080047971.01.T01:intergenic
TCTTGGACACAAATAGAACC+TGG 0.651184 contig155end:-8173 MsG0080047971.01.T01:intergenic
GAAATAATGGTGGCTTTGTG+TGG 0.662977 contig155end:+9068 MsG0080047971.01.T01:CDS
CAGGATCCTTAGAATGTGGG+AGG 0.665648 contig155end:+10148 MsG0080047971.01.T01:CDS
TGGGCAATGACTGATATTGG+TGG 0.666892 contig155end:+10866 MsG0080047971.01.T01:intron
AGTGCGATAATAACCAACGT+TGG 0.675852 contig155end:-10564 MsG0080047971.01.T01:intergenic
TATTGGTGGTGATAACAGGA+AGG 0.676800 contig155end:+10880 MsG0080047971.01.T01:intron
GGTACAACAATGATTCAACC+CGG 0.709843 contig155end:-10718 MsG0080047970.01.T01:intergenic
TTTCATCTAAAAGACAACCG+TGG 0.729653 contig155end:-9919 MsG0080047970.01.T01:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATGTCTATTAATTTAT+TGG + contig155end:12390-12409 MsG0080047971.01.T01:three_prime_UTR 10.0%
!! TATTTATTATATCTAGTTAT+CGG - contig155end:9471-9490 MsG0080047971.01.T01:intergenic 10.0%
!! TTAAAGTAAAAAATTGAAAT+TGG + contig155end:11732-11751 MsG0080047971.01.T01:intron 10.0%
!! TTGTTAAATTATCATAATTT+AGG + contig155end:8430-8449 MsG0080047971.01.T01:intron 10.0%
!! AACATAATCTATTAAATATG+AGG - contig155end:9327-9346 MsG0080047971.01.T01:intergenic 15.0%
!! AACTAGATATAATAAATAAG+TGG + contig155end:9473-9492 MsG0080047971.01.T01:intron 15.0%
!! CAAATCAAATAAGAATATAA+TGG + contig155end:11689-11708 MsG0080047971.01.T01:intron 15.0%
!! GAAAAATCATAAATTTGATT+TGG + contig155end:11080-11099 MsG0080047971.01.T01:intron 15.0%
!! TTGGTTTATTTACAATATTA+GGG + contig155end:8714-8733 MsG0080047971.01.T01:intron 15.0%
!!! ACAAAAGAAATTGAATTTTT+TGG - contig155end:8683-8702 MsG0080047971.01.T01:intergenic 15.0%
!!! ACTTTGAAAATCATTTTTAA+TGG + contig155end:9514-9533 MsG0080047971.01.T01:intron 15.0%
!!! CTGCTTTTTATTTTTATTTA+GGG + contig155end:11055-11074 MsG0080047971.01.T01:intron 15.0%
!!! TGTTTTTATTTGTTTATTTG+TGG + contig155end:9165-9184 MsG0080047971.01.T01:intron 15.0%
!!! TTATATTTTCAATTACTTTG+TGG + contig155end:9122-9141 MsG0080047971.01.T01:intron 15.0%
!! AAAAGAACAAATATAAAGCA+AGG - contig155end:11830-11849 MsG0080047971.01.T01:intergenic 20.0%
!! AATACTATCAACTAAATACT+CGG + contig155end:8387-8406 MsG0080047971.01.T01:intron 20.0%
!! ATGTTGATCAAAAATATGAA+TGG - contig155end:8969-8988 MsG0080047971.01.T01:intergenic 20.0%
!! ATTATGTGAGAAAATGATTA+TGG + contig155end:9206-9225 MsG0080047971.01.T01:intron 20.0%
!! CAACATATTAACTTATGAAT+TGG + contig155end:8983-9002 MsG0080047971.01.T01:intron 20.0%
!! CTTGGTTTATTTACAATATT+AGG + contig155end:8713-8732 MsG0080047971.01.T01:intron 20.0%
!! TAGACATAATAAACACAAAA+AGG - contig155end:12381-12400 MsG0080047971.01.T01:intergenic 20.0%
!! TATGTAAAACTATATGCATT+AGG + contig155end:12570-12589 MsG0080047971.01.T01:three_prime_UTR 20.0%
!! TGTAATTGATTATTGTAGTA+TGG - contig155end:9424-9443 MsG0080047971.01.T01:intergenic 20.0%
!!! AAGAGAAGGTAAATTTTAAT+TGG - contig155end:11354-11373 MsG0080047971.01.T01:intergenic 20.0%
!!! ACATCTTTATTTATTTCCAA+TGG - contig155end:11398-11417 MsG0080047971.01.T01:intergenic 20.0%
!!! AGGTAAATTTTAATTGGATT+AGG - contig155end:11348-11367 MsG0080047971.01.T01:intergenic 20.0%
!!! AGTTGTTTTTTGAAAAAGAA+AGG - contig155end:8805-8824 MsG0080047971.01.T01:intergenic 20.0%
!!! ATTCTGTTTTTTGTCTTTTA+GGG + contig155end:9812-9831 MsG0080047971.01.T01:intron 20.0%
!!! CATTTTTAATGGAAAACTTT+TGG + contig155end:9525-9544 MsG0080047971.01.T01:intron 20.0%
!!! GCTGCTTTTTATTTTTATTT+AGG + contig155end:11054-11073 MsG0080047971.01.T01:intron 20.0%
!!! TAACTCTTACAAAAGATTTT+AGG + contig155end:9645-9664 MsG0080047971.01.T01:intron 20.0%
!!! TAATTTTTCTCTTCTGATTT+TGG + contig155end:12325-12344 MsG0080047971.01.T01:three_prime_UTR 20.0%
!!! TCTTTTGTCTTTATTAATCT+TGG + contig155end:8695-8714 MsG0080047971.01.T01:intron 20.0%
!!! TTATTTGATTTGAGATAAAC+AGG - contig155end:11681-11700 MsG0080047971.01.T01:intergenic 20.0%
!!! TTTTGAACAAGAAGAAATAA+TGG + contig155end:9055-9074 MsG0080047971.01.T01:CDS 20.0%
! AAAAGACAAAAAACAGAATG+AGG - contig155end:9811-9830 MsG0080047971.01.T01:intergenic 25.0%
! AAAATAGAAGATTGTGATGT+AGG - contig155end:9867-9886 MsG0080047971.01.T01:intergenic 25.0%
! AAATAGAGTTAGAACTTGAA+TGG + contig155end:12248-12267 MsG0080047971.01.T01:three_prime_UTR 25.0%
! AAGATCACATGATTAAAGAT+GGG + contig155end:8192-8211 MsG0080047971.01.T01:CDS 25.0%
! AATTGCTTAATACCAAGATA+AGG - contig155end:11564-11583 MsG0080047971.01.T01:intergenic 25.0%
! AGTGTTTAGTTAAATGTTGA+CGG + contig155end:10412-10431 MsG0080047971.01.T01:intron 25.0%
! ATAATTACCTCAAATGAATG+TGG - contig155end:9100-9119 MsG0080047971.01.T01:intergenic 25.0%
! ATATGTAGATAGTTCATTTC+TGG + contig155end:11933-11952 MsG0080047971.01.T01:intron 25.0%
! ATTGCAAGTTATAACCAATA+AGG - contig155end:11435-11454 MsG0080047971.01.T01:intergenic 25.0%
! ATTTCTCACTATAAACTTGT+AGG - contig155end:10753-10772 MsG0080047971.01.T01:intergenic 25.0%
! CAGTGAAAATTATTATGGAA+AGG + contig155end:12180-12199 MsG0080047971.01.T01:three_prime_UTR 25.0%
! GAAAATCAGCTTGTATTAAT+GGG - contig155end:10594-10613 MsG0080047971.01.T01:intergenic 25.0%
! TAAAGTAAAATACCAGTACA+TGG + contig155end:8584-8603 MsG0080047971.01.T01:intron 25.0%
! TACTATAGATATTGTAGTGT+TGG - contig155end:10812-10831 MsG0080047971.01.T01:intergenic 25.0%
! TAGAAAATGCACTCAATATT+TGG - contig155end:12417-12436 MsG0080047971.01.T01:intergenic 25.0%
! TAGTGCAGTGAAAATTATTA+TGG + contig155end:12175-12194 MsG0080047971.01.T01:three_prime_UTR 25.0%
! TCAGAAGAGAAAAATTACAT+AGG - contig155end:12322-12341 MsG0080047971.01.T01:intergenic 25.0%
! TGGATGCTTAATTTATTCTT+TGG + contig155end:11793-11812 MsG0080047971.01.T01:intron 25.0%
! TTAAATATGAGGCCTATTAA+TGG - contig155end:9316-9335 MsG0080047971.01.T01:intergenic 25.0%
! TTGAACTCAATACCATTAAT+AGG + contig155end:9301-9320 MsG0080047971.01.T01:intron 25.0%
!! ATAATACAACTACTAGTTTC+TGG - contig155end:8470-8489 MsG0080047971.01.T01:intergenic 25.0%
!! CATTTTCTCACATAATTGTT+AGG - contig155end:9202-9221 MsG0080047971.01.T01:intergenic 25.0%
!! TGTTTTGTATCCTATAACAA+TGG + contig155end:11256-11275 MsG0080047971.01.T01:intron 25.0%
!! TTTTCTGCTGATGATATAAT+GGG + contig155end:12022-12041 MsG0080047971.01.T01:three_prime_UTR 25.0%
!!! ATAAATTTGATTTGGTGCTA+TGG + contig155end:11088-11107 MsG0080047971.01.T01:intron 25.0%
!!! CATTCTGTTTTTTGTCTTTT+AGG + contig155end:9811-9830 MsG0080047971.01.T01:intron 25.0%
!!! GGCAATTTTTTTCTATCAAT+TGG + contig155end:9728-9747 MsG0080047971.01.T01:intron 25.0%
!!! TCTATTTTGTTTTGTTGTGA+AGG + contig155end:9879-9898 MsG0080047971.01.T01:intron 25.0%
!!! TTCTGTTTTTTGTCTTTTAG+GGG + contig155end:9813-9832 MsG0080047971.01.T01:intron 25.0%
!!! TTTTTTGAAAAAGAAAGGCA+CGG - contig155end:8800-8819 MsG0080047971.01.T01:intergenic 25.0%
AAAATCAAATGCGATTAAGG+AGG - contig155end:10322-10341 MsG0080047970.01.T01:intergenic 30.0%
AAGGTTAAGGTAGAATTCAT+TGG + contig155end:10899-10918 MsG0080047971.01.T01:three_prime_UTR 30.0%
AATTACATAGGTCTCTTCAT+AGG - contig155end:12310-12329 MsG0080047971.01.T01:intergenic 30.0%
ACCATTTATAGACTCCAAAT+AGG - contig155end:9957-9976 MsG0080047971.01.T01:intergenic 30.0%
ACTCCAAAGTCTATTGTAAA+AGG + contig155end:8539-8558 MsG0080047971.01.T01:CDS 30.0%
ACTGAAGATAAAATTGGGAA+GGG - contig155end:11652-11671 MsG0080047971.01.T01:intergenic 30.0%
AGAATTCATTGGAATGTTGA+AGG + contig155end:10910-10929 MsG0080047971.01.T01:three_prime_UTR 30.0%
ATTATGGAGCATATTCTATG+AGG + contig155end:9222-9241 MsG0080047971.01.T01:intron 30.0%
ATTGCTTAATACAGTTCCTT+GGG + contig155end:11521-11540 MsG0080047971.01.T01:intron 30.0%
CAAGATCACATGATTAAAGA+TGG + contig155end:8191-8210 MsG0080047971.01.T01:CDS 30.0%
CATCTTTAATCATGTGATCT+TGG - contig155end:8193-8212 MsG0080047971.01.T01:intergenic 30.0%
CATTATATCATCAGCAGAAA+AGG - contig155end:12023-12042 MsG0080047971.01.T01:intergenic 30.0%
CCAAAAATCAAATGCGATTA+AGG - contig155end:10325-10344 MsG0080047971.01.T01:intergenic 30.0%
CCATTTATAGACTCCAAATA+GGG - contig155end:9956-9975 MsG0080047971.01.T01:intergenic 30.0%
CTCCAAAGTCTATTGTAAAA+GGG + contig155end:8540-8559 MsG0080047971.01.T01:CDS 30.0%
GCATATTTATTTGTTCCTCT+AGG - contig155end:12359-12378 MsG0080047971.01.T01:intergenic 30.0%
GGAAAATCAGCTTGTATTAA+TGG - contig155end:10595-10614 MsG0080047971.01.T01:intergenic 30.0%
GGAAATTCAATTGACCTTAT+AGG - contig155end:9359-9378 MsG0080047971.01.T01:intergenic 30.0%
GTAAAACTATATGCATTAGG+CGG + contig155end:12573-12592 MsG0080047971.01.T01:three_prime_UTR 30.0%
GTATGCAACAAATTTCAAGA+CGG - contig155end:11770-11789 MsG0080047971.01.T01:intergenic 30.0%
TAACCAATAAGGAACTGTAT+TGG - contig155end:11424-11443 MsG0080047971.01.T01:intergenic 30.0%
TATTAAGCAATGGTGAGAAT+GGG - contig155end:11512-11531 MsG0080047971.01.T01:intergenic 30.0%
TATTGTAAAAGGGAAGATGA+AGG + contig155end:8550-8569 MsG0080047971.01.T01:CDS 30.0%
TGAACAAGAAGAAATAATGG+TGG + contig155end:9058-9077 MsG0080047971.01.T01:CDS 30.0%
TGACACTTAATCTTATCAAC+TGG + contig155end:11966-11985 MsG0080047971.01.T01:intron 30.0%
TTATTTCCAATGGTGAGAAT+GGG - contig155end:11388-11407 MsG0080047971.01.T01:intergenic 30.0%
TTCTTGCCATATATTTCCTT+GGG + contig155end:11027-11046 MsG0080047971.01.T01:intron 30.0%
TTGAAGGTGAAAGTGATTAA+AGG + contig155end:10926-10945 MsG0080047971.01.T01:three_prime_UTR 30.0%
TTGCGAACAATGACTAAAAT+TGG - contig155end:12613-12632 MsG0080047971.01.T01:intergenic 30.0%
TTTAAAAAACGTGAACCCAT+TGG - contig155end:9705-9724 MsG0080047971.01.T01:intergenic 30.0%
TTTATTTCCAATGGTGAGAA+TGG - contig155end:11389-11408 MsG0080047971.01.T01:intergenic 30.0%
TTTCTGAATCGAGTTTCAAT+TGG + contig155end:10255-10274 MsG0080047971.01.T01:intron 30.0%
TTTCTTGCCATATATTTCCT+TGG + contig155end:11026-11045 MsG0080047971.01.T01:intron 30.0%
! ACTTTTGTTAGTGATTTCGT+TGG + contig155end:10846-10865 MsG0080047971.01.T01:intron 30.0%
! AGATTTTAGGCTAAATTGCA+TGG + contig155end:9658-9677 MsG0080047971.01.T01:intron 30.0%
! CACTGACTGAAGATAAAATT+GGG - contig155end:11657-11676 MsG0080047971.01.T01:intergenic 30.0%
! CTTTTCTGCTGATGATATAA+TGG + contig155end:12021-12040 MsG0080047971.01.T01:three_prime_UTR 30.0%
! CTTTTGTTAGTGATTTCGTT+GGG + contig155end:10847-10866 MsG0080047971.01.T01:intron 30.0%
! TAAACTTGTAGGTTTTCATC+TGG - contig155end:10742-10761 MsG0080047971.01.T01:intergenic 30.0%
! TCACTGACTGAAGATAAAAT+TGG - contig155end:11658-11677 MsG0080047971.01.T01:intergenic 30.0%
! TTCCCTTTTACAATAGACTT+TGG - contig155end:8545-8564 MsG0080047971.01.T01:intergenic 30.0%
!! CCTTAATCGCATTTGATTTT+TGG + contig155end:10322-10341 MsG0080047971.01.T01:intron 30.0%
!! GTATGTTTTTCAGAAGAAGT+TGG + contig155end:10499-10518 MsG0080047971.01.T01:CDS 30.0%
!! TGAAATTTGTTGCATACTGA+TGG + contig155end:11773-11792 MsG0080047971.01.T01:intron 30.0%
!! TGTGCATTGTTGATTTGTTA+GGG + contig155end:10440-10459 MsG0080047971.01.T01:intron 30.0%
!! TTGTGCATTGTTGATTTGTT+AGG + contig155end:10439-10458 MsG0080047971.01.T01:intron 30.0%
!!! GGGTTCACGTTTTTTAAATA+CGG + contig155end:9707-9726 MsG0080047971.01.T01:intron 30.0%
!!! TTCAGTCATTTTTCAGTCAT+TGG + contig155end:10085-10104 MsG0080047971.01.T01:CDS 30.0%
AACAGCTATCCATCACAAAT+CGG - contig155end:10065-10084 MsG0080047970.01.T01:intergenic 35.0%
AACTCATCTTTCTGCAATCA+TGG - contig155end:11285-11304 MsG0080047971.01.T01:intergenic 35.0%
AAGGGAGATATTTGTGTAGT+GGG - contig155end:8904-8923 MsG0080047971.01.T01:intergenic 35.0%
ACAAAGATGCAGAAGATTGA+AGG + contig155end:10623-10642 MsG0080047971.01.T01:three_prime_UTR 35.0%
ACATGGACACTGTTTATGTA+AGG + contig155end:8240-8259 MsG0080047971.01.T01:intron 35.0%
AGAGTAATTTGAATCCAGTC+TGG + contig155end:11140-11159 MsG0080047971.01.T01:three_prime_UTR 35.0%
AGGGAACAAAGAATAAGAAG+AGG - contig155end:11633-11652 MsG0080047971.01.T01:intergenic 35.0%
ATAACATCTGTCATGGCATT+TGG + contig155end:12073-12092 MsG0080047971.01.T01:three_prime_UTR 35.0%
ATAACATTGTTGCCATGTAC+TGG - contig155end:8599-8618 MsG0080047971.01.T01:intergenic 35.0%
ATATGTTCTTCATTCCAGAC+TGG - contig155end:11157-11176 MsG0080047971.01.T01:intergenic 35.0%
ATCATGGTGTCCATTGTTAT+AGG - contig155end:11269-11288 MsG0080047971.01.T01:intergenic 35.0%
CAAAGAATAAGAAGAGGAAG+AGG - contig155end:11627-11646 MsG0080047971.01.T01:intergenic 35.0%
CAAGGAACTGTATTAAGCAA+TGG - contig155end:11522-11541 MsG0080047971.01.T01:intergenic 35.0%
CAAGGTTCAAAACAACATAC+GGG - contig155end:10988-11007 MsG0080047971.01.T01:intergenic 35.0%
CATTGCTTAATACAGTTCCT+TGG + contig155end:11520-11539 MsG0080047971.01.T01:intron 35.0%
CCAAGGTTCAAAACAACATA+CGG - contig155end:10989-11008 MsG0080047971.01.T01:intergenic 35.0%
CTTCCAATACAGTTCCTTAT+TGG + contig155end:11418-11437 MsG0080047971.01.T01:intron 35.0%
CTTCTTCAAATGAAACTACC+AGG + contig155end:8155-8174 MsG0080047971.01.T01:CDS 35.0%
GACTGAAGATAAAATTGGGA+AGG - contig155end:11653-11672 MsG0080047971.01.T01:intergenic 35.0%
GCATTATGGACAGTTGAAAT+TGG + contig155end:11192-11211 MsG0080047971.01.T01:three_prime_UTR 35.0%
GCTTAATACCAAGATAAGGA+GGG - contig155end:11560-11579 MsG0080047971.01.T01:intergenic 35.0%
GTATCTTCCACATTCATTTG+AGG + contig155end:9090-9109 MsG0080047971.01.T01:CDS 35.0%
GTATTAAGCAATGGTGAGAA+TGG - contig155end:11513-11532 MsG0080047971.01.T01:intergenic 35.0%
GTGAAAATTAGCAGTATGCT+TGG - contig155end:10699-10718 MsG0080047971.01.T01:intergenic 35.0%
TAAATGGAACTGGCAAAATG+AGG - contig155end:11315-11334 MsG0080047971.01.T01:intergenic 35.0%
TACTCTTCATTACACTTGTC+TGG - contig155end:11126-11145 MsG0080047971.01.T01:intergenic 35.0%
TATAAATCCGTCAGATGACA+TGG + contig155end:8223-8242 MsG0080047971.01.T01:CDS 35.0%
TCTGCATCTTTGTCTTCATT+TGG - contig155end:10616-10635 MsG0080047971.01.T01:intergenic 35.0%
TGCTTAATACCAAGATAAGG+AGG - contig155end:11561-11580 MsG0080047971.01.T01:intergenic 35.0%
TTGTCTCAAATACCATCTCT+TGG + contig155end:8500-8519 MsG0080047971.01.T01:CDS 35.0%
TTTCATCTAAAAGACAACCG+TGG - contig155end:9922-9941 MsG0080047971.01.T01:intergenic 35.0%
! AATATCCCTTTTGCCCTATT+TGG + contig155end:9940-9959 MsG0080047971.01.T01:CDS 35.0%
! ACTTTTGATGTTCCAAGAGA+TGG - contig155end:8515-8534 MsG0080047971.01.T01:intergenic 35.0%
! AGCATACTGCTAATTTTCAC+CGG + contig155end:10699-10718 MsG0080047971.01.T01:three_prime_UTR 35.0%
! ATGTTTTACGACGACCTATA+AGG + contig155end:9342-9361 MsG0080047971.01.T01:intron 35.0%
! ATTAGGTTGCTCGCAATAAA+TGG - contig155end:11331-11350 MsG0080047971.01.T01:intergenic 35.0%
! CCCTATTTGGAGTCTATAAA+TGG + contig155end:9953-9972 MsG0080047971.01.T01:CDS 35.0%
! TAGATTAGCTCCTTCCATAA+GGG + contig155end:11583-11602 MsG0080047971.01.T01:intron 35.0%
! TGATGATATAATGGGAGAAG+CGG + contig155end:12030-12049 MsG0080047971.01.T01:three_prime_UTR 35.0%
! TGGTATTTGAGACAACTTCT+TGG - contig155end:8495-8514 MsG0080047971.01.T01:intergenic 35.0%
! TTAGATTAGCTCCTTCCATA+AGG + contig155end:11582-11601 MsG0080047971.01.T01:intron 35.0%
!! CGAGTTTTGATATGTACCAA+GGG - contig155end:8922-8941 MsG0080047971.01.T01:intergenic 35.0%
!! TTGGTTTGTTGATGCTGATT+TGG + contig155end:10341-10360 MsG0080047971.01.T01:intron 35.0%
!! TTGTTGATGCTGATTTGGTA+GGG + contig155end:10346-10365 MsG0080047971.01.T01:intron 35.0%
!! TTGTTGTCTTGTTGACTTTC+AGG - contig155end:9380-9399 MsG0080047971.01.T01:intergenic 35.0%
!! TTTGTTGATGCTGATTTGGT+AGG + contig155end:10345-10364 MsG0080047971.01.T01:intron 35.0%
!!! GGGGAATTTTTTTGTCGTTT+TGG + contig155end:9832-9851 MsG0080047971.01.T01:intron 35.0%
AAAACGTGAACCCATTGGAA+TGG - contig155end:9700-9719 MsG0080047970.01.T01:intergenic 40.0%
AAAAGACAACCGTGGAACAT+AGG - contig155end:9914-9933 MsG0080047970.01.T01:intergenic 40.0%
AAACCAATTGACATGCACAC+TGG - contig155end:12551-12570 MsG0080047970.01.T01:intergenic 40.0%
AAAGACAACCGTGGAACATA+GGG - contig155end:9913-9932 MsG0080047970.01.T01:intergenic 40.0%
AATGGACAATGCACTCATTG+AGG + contig155end:12151-12170 MsG0080047971.01.T01:three_prime_UTR 40.0%
ACACACACACAAACAAAGGA+GGG - contig155end:11857-11876 MsG0080047971.01.T01:intergenic 40.0%
ACACACACACACACAAACAA+AGG - contig155end:11861-11880 MsG0080047971.01.T01:intergenic 40.0%
ACTTGACTTTATATCCCGGA+CGG - contig155end:10963-10982 MsG0080047971.01.T01:intergenic 40.0%
AGACTCCAAATAGGGCAAAA+GGG - contig155end:9948-9967 MsG0080047971.01.T01:intergenic 40.0%
AGGGAGATATTTGTGTAGTG+GGG - contig155end:8903-8922 MsG0080047971.01.T01:intergenic 40.0%
AGTGCGATAATAACCAACGT+TGG - contig155end:10567-10586 MsG0080047971.01.T01:intergenic 40.0%
ATAAAAAGCAGCAGTTCCCA+AGG - contig155end:11046-11065 MsG0080047971.01.T01:intergenic 40.0%
ATGTTTGGCGATATGCAGAT+CGG + contig155end:12106-12125 MsG0080047971.01.T01:three_prime_UTR 40.0%
CAAGGGAGATATTTGTGTAG+TGG - contig155end:8905-8924 MsG0080047971.01.T01:intergenic 40.0%
CACTACACAAATATCTCCCT+TGG + contig155end:8903-8922 MsG0080047971.01.T01:intron 40.0%
CATTGTTGCAGTCAACTGAA+CGG - contig155end:8862-8881 MsG0080047971.01.T01:intergenic 40.0%
CTGTTCATCTCCATTCCAAT+GGG + contig155end:9687-9706 MsG0080047971.01.T01:intron 40.0%
GAAAGTCCATTGCTTGGAAT+AGG - contig155end:10653-10672 MsG0080047971.01.T01:intergenic 40.0%
GCAACGAGCATACTATAAGT+TGG - contig155end:8759-8778 MsG0080047971.01.T01:intergenic 40.0%
GCAGTTCCCAAGGAAATATA+TGG - contig155end:11036-11055 MsG0080047971.01.T01:intergenic 40.0%
GGTACAACAATGATTCAACC+CGG - contig155end:10721-10740 MsG0080047971.01.T01:intergenic 40.0%
GGTCACTTGACTTTATATCC+CGG - contig155end:10967-10986 MsG0080047971.01.T01:intergenic 40.0%
GTCACTGATAACATCTGTCA+TGG + contig155end:12066-12085 MsG0080047971.01.T01:three_prime_UTR 40.0%
GTGCGATAATAACCAACGTT+GGG - contig155end:10566-10585 MsG0080047971.01.T01:intergenic 40.0%
GTTGGGAGCAACTGAAAAAT+AGG - contig155end:10549-10568 MsG0080047971.01.T01:intergenic 40.0%
GTTTCAGAGTCGTAATCAAC+CGG + contig155end:10014-10033 MsG0080047971.01.T01:intron 40.0%
TAGACTCCAAATAGGGCAAA+AGG - contig155end:9949-9968 MsG0080047971.01.T01:intergenic 40.0%
TCAAGATTCATGCCACAGTT+CGG + contig155end:10465-10484 MsG0080047971.01.T01:CDS 40.0%
TCCCTCAAAAAAATGCACAC+TGG - contig155end:12523-12542 MsG0080047971.01.T01:intergenic 40.0%
TCTTGGACACAAATAGAACC+TGG - contig155end:8176-8195 MsG0080047971.01.T01:intergenic 40.0%
TGGTGATAACAGGAAGGTTA+AGG + contig155end:10886-10905 MsG0080047971.01.T01:intron 40.0%
TGTAAAAGGGAAGATGAAGG+TGG + contig155end:8553-8572 MsG0080047971.01.T01:intron 40.0%
TTCAACTGTCCATAATGCTC+TGG - contig155end:11190-11209 MsG0080047971.01.T01:intergenic 40.0%
TTGCTCGCAATAAATGGAAC+TGG - contig155end:11325-11344 MsG0080047971.01.T01:intergenic 40.0%
TTTCAGAAGAAGTTGGCTGA+AGG + contig155end:10506-10525 MsG0080047971.01.T01:CDS 40.0%
TTTCTCCAGATTCAACGTTC+TGG - contig155end:12231-12250 MsG0080047971.01.T01:intergenic 40.0%
TTTGGAGATGCTGGAATGTT+TGG + contig155end:12091-12110 MsG0080047971.01.T01:three_prime_UTR 40.0%
! AATTGGATTTCCCCTTTTCG+CGG + contig155end:9745-9764 MsG0080047971.01.T01:intron 40.0%
! GCATACTGCTAATTTTCACC+GGG + contig155end:10700-10719 MsG0080047971.01.T01:three_prime_UTR 40.0%
! TGGGAGTGTACATGATAACA+TGG + contig155end:11910-11929 MsG0080047971.01.T01:intron 40.0%
! TTGTCTGTTCCAGAGCATTA+TGG + contig155end:11178-11197 MsG0080047971.01.T01:three_prime_UTR 40.0%
!! AGTCGTAATCAACCGGTTTT+GGG + contig155end:10021-10040 MsG0080047971.01.T01:intron 40.0%
!! CTCAGTTTTCCGATTTGTGA+TGG + contig155end:10053-10072 MsG0080047971.01.T01:intron 40.0%
!! CTGATATTGGTGGTGATAAC+AGG + contig155end:10876-10895 MsG0080047971.01.T01:intron 40.0%
!! GAAATAATGGTGGCTTTGTG+TGG + contig155end:9068-9087 MsG0080047971.01.T01:CDS 40.0%
!! GCGAGTTTTGATATGTACCA+AGG - contig155end:8923-8942 MsG0080047971.01.T01:intergenic 40.0%
!! TATTGGTGGTGATAACAGGA+AGG + contig155end:10880-10899 MsG0080047971.01.T01:intron 40.0%
!!! AGACAGTTTTGGGTTGATTC+AGG + contig155end:9779-9798 MsG0080047971.01.T01:intron 40.0%
!!! ATTTTGGCTCATCATCCTAG+AGG + contig155end:12341-12360 MsG0080047971.01.T01:three_prime_UTR 40.0%
!!! CCGTATGTTGTTTTGAACCT+TGG + contig155end:10986-11005 MsG0080047971.01.T01:three_prime_UTR 40.0%
!!! GCCAGTGTGCATTTTTTTGA+GGG + contig155end:12519-12538 MsG0080047971.01.T01:intron 40.0%
!!! TGCCAGTGTGCATTTTTTTG+AGG + contig155end:12518-12537 MsG0080047971.01.T01:intron 40.0%
!!! TGTCGTTGGTTTCAGTTTTG+TGG + contig155end:9987-10006 MsG0080047971.01.T01:intron 40.0%
AACCAAGACTTCCAAGAGAG+TGG + contig155end:8291-8310 MsG0080047971.01.T01:intron 45.0%
AACTGGCAAAATGAGGATGG+AGG - contig155end:11308-11327 MsG0080047971.01.T01:intergenic 45.0%
AAGCTCCAGAACGTTGAATC+TGG + contig155end:12223-12242 MsG0080047971.01.T01:three_prime_UTR 45.0%
ACAGTGTCCATGTCATCTGA+CGG - contig155end:8233-8252 MsG0080047971.01.T01:intergenic 45.0%
AGCACCATCTCCAAAGAGTT+TGG - contig155end:10200-10219 MsG0080047971.01.T01:intergenic 45.0%
AGGTCAGGATCCTTAGAATG+TGG + contig155end:10144-10163 MsG0080047971.01.T01:CDS 45.0%
AGTCATTGTTCGCAAGCTGT+TGG + contig155end:12618-12637 MsG0080047971.01.T01:three_prime_UTR 45.0%
CAAGATAAGGAGGGTAAGTG+AGG - contig155end:11551-11570 MsG0080047971.01.T01:intergenic 45.0%
CACACACACACAAACAAAGG+AGG - contig155end:11858-11877 MsG0080047971.01.T01:intergenic 45.0%
CACAGATTCCCTATGTTCCA+CGG + contig155end:9902-9921 MsG0080047971.01.T01:intron 45.0%
CCAAAGAGTTTGGCTGATCA+GGG - contig155end:10190-10209 MsG0080047971.01.T01:intergenic 45.0%
CGTTGGGCAATGACTGATAT+TGG + contig155end:10863-10882 MsG0080047971.01.T01:intron 45.0%
CTCAACGAAAGTCCATTGCT+TGG - contig155end:10659-10678 MsG0080047971.01.T01:intergenic 45.0%
CTCACTTACCCTCCTTATCT+TGG + contig155end:11549-11568 MsG0080047971.01.T01:intron 45.0%
GAGACTCAAGAACCCAAAAC+CGG - contig155end:10036-10055 MsG0080047971.01.T01:intergenic 45.0%
GATGGTGCTTATCGATGAGA+AGG + contig155end:10211-10230 MsG0080047971.01.T01:CDS 45.0%
GCACGGACTTGAGTTTCAAT+CGG - contig155end:8783-8802 MsG0080047971.01.T01:intergenic 45.0%
GCACTCAACTTCTGCTTGTA+TGG - contig155end:9616-9635 MsG0080047971.01.T01:intergenic 45.0%
GCTGTTCATCTCCATTCCAA+TGG + contig155end:9686-9705 MsG0080047971.01.T01:intron 45.0%
GGGTGTAACTGTGTAAGAGA+AGG - contig155end:11368-11387 MsG0080047971.01.T01:intergenic 45.0%
GGTCAGGATCCTTAGAATGT+GGG + contig155end:10145-10164 MsG0080047971.01.T01:CDS 45.0%
GGTTCTCCTATTCCAAGCAA+TGG + contig155end:10644-10663 MsG0080047971.01.T01:three_prime_UTR 45.0%
GTTACACCCATTCTCACCAT+TGG + contig155end:11379-11398 MsG0080047971.01.T01:intron 45.0%
TCCAAAGAGTTTGGCTGATC+AGG - contig155end:10191-10210 MsG0080047971.01.T01:intergenic 45.0%
TCCATAAGGGTCAGAACTAG+AGG + contig155end:11596-11615 MsG0080047971.01.T01:intron 45.0%
TGATCAGGGTTCAGGAAAGA+AGG - contig155end:10176-10195 MsG0080047971.01.T01:intergenic 45.0%
TGGAACTGGCAAAATGAGGA+TGG - contig155end:11311-11330 MsG0080047971.01.T01:intergenic 45.0%
TGGGCAATGACTGATATTGG+TGG + contig155end:10866-10885 MsG0080047971.01.T01:intron 45.0%
TTGCCAGTGTGCATGTCAAT+TGG + contig155end:12545-12564 MsG0080047971.01.T01:three_prime_UTR 45.0%
! AAGGTACCTCCCACATTCTA+AGG - contig155end:10157-10176 MsG0080047971.01.T01:intergenic 45.0%
! CGAGCATACTATAAGTTGGC+TGG - contig155end:8755-8774 MsG0080047971.01.T01:intergenic 45.0%
! TCAGCCAAACTCTTTGGAGA+TGG + contig155end:10193-10212 MsG0080047971.01.T01:CDS 45.0%
! TTTTCAGTTGCTCCCAACGT+TGG + contig155end:10551-10570 MsG0080047971.01.T01:CDS 45.0%
!! CTAGTTCTGACCCTTATGGA+AGG - contig155end:11596-11615 MsG0080047971.01.T01:intergenic 45.0%
!! GAGTCGTAATCAACCGGTTT+TGG + contig155end:10020-10039 MsG0080047971.01.T01:intron 45.0%
!! TCCTCTAGTTCTGACCCTTA+TGG - contig155end:11600-11619 MsG0080047971.01.T01:intergenic 45.0%
!! TGTTTTGAACCTTGGCACAC+AGG + contig155end:10994-11013 MsG0080047971.01.T01:three_prime_UTR 45.0%
AAGGCACAGATTTAGCCGTC+CGG + contig155end:10945-10964 MsG0080047971.01.T01:three_prime_UTR 50.0%
AGTTTGGCTGATCAGGGTTC+AGG - contig155end:10184-10203 MsG0080047971.01.T01:intergenic 50.0%
CAACAACTGCTTCCGAACTG+TGG - contig155end:10480-10499 MsG0080047971.01.T01:intergenic 50.0%
CAGGATCCTTAGAATGTGGG+AGG + contig155end:10148-10167 MsG0080047971.01.T01:CDS 50.0%
CCCTGATCAGCCAAACTCTT+TGG + contig155end:10187-10206 MsG0080047971.01.T01:CDS 50.0%
GAGTGGACAAGCTCACATAG+TGG + contig155end:8308-8327 MsG0080047971.01.T01:intron 50.0%
GTCATGGCATTTGGAGATGC+TGG + contig155end:12082-12101 MsG0080047971.01.T01:three_prime_UTR 50.0%
GTCCACTCTCTTGGAAGTCT+TGG - contig155end:8296-8315 MsG0080047971.01.T01:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + contig155end:11867-11886 MsG0080047971.01.T01:intron 50.0%
TGGCTGAAGGAGATGCTTAC+AGG + contig155end:10519-10538 MsG0080047971.01.T01:CDS 50.0%
TGTGAGCTTGTCCACTCTCT+TGG - contig155end:8305-8324 MsG0080047971.01.T01:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + contig155end:11866-11885 MsG0080047971.01.T01:intron 50.0%
TTGAACCTTGGCACACAGGT+TGG + contig155end:10998-11017 MsG0080047971.01.T01:intron 50.0%
! AAGCTTGGCGGAGACAGTTT+TGG + contig155end:9768-9787 MsG0080047971.01.T01:intron 50.0%
! AGCTTGGCGGAGACAGTTTT+GGG + contig155end:9769-9788 MsG0080047971.01.T01:intron 50.0%
! CATTGGCTGCTGTTGTTCCT+GGG + contig155end:10102-10121 MsG0080047971.01.T01:CDS 50.0%
! GTGTAGTGGGGAGAAGACAT+TGG - contig155end:8891-8910 MsG0080047971.01.T01:intergenic 50.0%
! TCATTGGCTGCTGTTGTTCC+TGG + contig155end:10101-10120 MsG0080047971.01.T01:CDS 50.0%
! TGGTTGTGTTGCTCTGTCGT+TGG + contig155end:9973-9992 MsG0080047971.01.T01:CDS 50.0%
AGCAACCAACCTGTGTGCCA+AGG - contig155end:11006-11025 MsG0080047971.01.T01:intergenic 55.0%
AGGCACAGATTTAGCCGTCC+GGG + contig155end:10946-10965 MsG0080047971.01.T01:three_prime_UTR 55.0%
GGGTAAGTGAGGAATGCCCA+AGG - contig155end:11540-11559 MsG0080047971.01.T01:intergenic 55.0%
! AGGGGTGGCGATTTAAGGTC+AGG + contig155end:10129-10148 MsG0080047971.01.T01:CDS 55.0%
! TTCCCCTTTTCGCGGAAGCT+TGG + contig155end:9753-9772 MsG0080047971.01.T01:intron 55.0%
CCGCCAAGCTTCCGCGAAAA+GGG - contig155end:9759-9778 MsG0080047971.01.T01:intergenic 60.0%
CGCCAAGCTTCCGCGAAAAG+GGG - contig155end:9758-9777 MsG0080047971.01.T01:intergenic 60.0%
CTGTTGTTCCTGGGAGGGAG+GGG + contig155end:10111-10130 MsG0080047971.01.T01:CDS 60.0%
GAGGGAGGGGTGGCGATTTA+AGG + contig155end:10124-10143 MsG0080047971.01.T01:CDS 60.0%
GCTGTTGTTCCTGGGAGGGA+GGG + contig155end:10110-10129 MsG0080047971.01.T01:CDS 60.0%
GGCTGCTGTTGTTCCTGGGA+GGG + contig155end:10106-10125 MsG0080047971.01.T01:CDS 60.0%
TCCGCCAAGCTTCCGCGAAA+AGG - contig155end:9760-9779 MsG0080047971.01.T01:intergenic 60.0%
TGCTGTTGTTCCTGGGAGGG+AGG + contig155end:10109-10128 MsG0080047971.01.T01:CDS 60.0%
TGGCTGCTGTTGTTCCTGGG+AGG + contig155end:10105-10124 MsG0080047971.01.T01:CDS 60.0%
! CCCTTTTCGCGGAAGCTTGG+CGG + contig155end:9756-9775 MsG0080047971.01.T01:intron 60.0%
TTGTTCCTGGGAGGGAGGGG+TGG + contig155end:10114-10133 MsG0080047971.01.T01:CDS 65.0%
AATCGCCACCCCTCCCTCCC+AGG - contig155end:10122-10141 MsG0080047971.01.T01:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig155end gene 8146 12718 8146 ID=MsG0080047971.01;Name=MsG0080047971.01
contig155end mRNA 8146 12718 8146 ID=MsG0080047971.01.T01;Parent=MsG0080047971.01;Name=MsG0080047971.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.45|0.63|0.7|0.54|11|1068|248
contig155end exon 8146 8256 8146 ID=MsG0080047971.01.T01:exon:49149;Parent=MsG0080047971.01.T01
contig155end exon 8452 8571 8452 ID=MsG0080047971.01.T01:exon:49150;Parent=MsG0080047971.01.T01
contig155end exon 8735 8794 8735 ID=MsG0080047971.01.T01:exon:49151;Parent=MsG0080047971.01.T01
contig155end exon 9035 9111 9035 ID=MsG0080047971.01.T01:exon:49152;Parent=MsG0080047971.01.T01
contig155end exon 9907 9994 9907 ID=MsG0080047971.01.T01:exon:49153;Parent=MsG0080047971.01.T01
contig155end exon 10080 10232 10080 ID=MsG0080047971.01.T01:exon:49154;Parent=MsG0080047971.01.T01
contig155end exon 10461 10763 10461 ID=MsG0080047971.01.T01:exon:49155;Parent=MsG0080047971.01.T01
contig155end exon 10898 11015 10898 ID=MsG0080047971.01.T01:exon:49156;Parent=MsG0080047971.01.T01
contig155end CDS 8146 8256 8146 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end CDS 8452 8571 8452 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end CDS 8735 8794 8735 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end CDS 9035 9111 9035 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end CDS 9907 9994 9907 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end CDS 10080 10232 10080 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end CDS 10461 10598 10461 ID=MsG0080047971.01.T01:cds;Parent=MsG0080047971.01.T01
contig155end three_prime_UTR 10599 10763 10599 ID=MsG0080047971.01.T01:three_prime_utr;Parent=MsG0080047971.01.T01
contig155end three_prime_UTR 10898 11015 10898 ID=MsG0080047971.01.T01:three_prime_utr;Parent=MsG0080047971.01.T01
contig155end three_prime_UTR 11118 11213 11118 ID=MsG0080047971.01.T01:three_prime_utr;Parent=MsG0080047971.01.T01
contig155end three_prime_UTR 12001 12510 12001 ID=MsG0080047971.01.T01:three_prime_utr;Parent=MsG0080047971.01.T01
contig155end three_prime_UTR 12540 12718 12540 ID=MsG0080047971.01.T01:three_prime_utr;Parent=MsG0080047971.01.T01
contig155end mRNA 10720 12718 10720 ID=MsG0080047971.01.T02;Parent=MsG0080047971.01;Name=MsG0080047971.01.T02;_AED=0.35;_eAED=0.35;_QI=152|1|1|1|0.66|0.5|4|554|124
contig155end exon 10720 11015 10720 ID=MsG0080047971.01.T02:exon:49160;Parent=MsG0080047971.01.T02
contig155end five_prime_UTR 10720 10871 10720 ID=MsG0080047971.01.T02:five_prime_utr;Parent=MsG0080047971.01.T02
contig155end CDS 10872 11015 10872 ID=MsG0080047971.01.T02:cds;Parent=MsG0080047971.01.T02
contig155end CDS 11118 11213 11118 ID=MsG0080047971.01.T02:cds;Parent=MsG0080047971.01.T02
contig155end CDS 12001 12135 12001 ID=MsG0080047971.01.T02:cds;Parent=MsG0080047971.01.T02
contig155end three_prime_UTR 12136 12510 12136 ID=MsG0080047971.01.T02:three_prime_utr;Parent=MsG0080047971.01.T02
contig155end three_prime_UTR 12540 12718 12540 ID=MsG0080047971.01.T02:three_prime_utr;Parent=MsG0080047971.01.T02
Gene Sequence

>MsG0080047971.01.T01

ATGCAAGAGCTTCTTCAAATGAAACTACCAGGTTCTATTTGTGTCCAAGATCACATGATTAAAGATGGGTTGCACGTTATAAATCCGTCAGATGACATGGACACTGTTTATGCACAACAAATTTCACCAGAAACTAGTAGTTGTATTATTTCCAAGAAGTTGTCTCAAATACCATCTCTTGGAACATCAAAAGTACAAACTCCAAAGTCTATTGTAAAAGGGAAGATGAAGGGTGCGAAGTTGAACTTCCAGCCAACTTATAGTATGCTCGTTGCACCGATTGAAACTCAACTAAATGCTGAAAGATTGCGTTTTGAACAAGAAGAAATAATGGTGGCTTTGTGTGGTATCTTCCACATTCATTTGAGATTCCCTATGTTCCACGGTTGTCTTTTAGATGAAATATCCCTTTTGCCCTATTTGGAGTCTATAAATGGTTGTGTTGCTCTGTCGTTGCTGTTTTCAGTCATTTTTCAGTCATTGGCTGCTGTTGTTCCTGGGAGGGAGGGGTGGCGATTTAAGGTCAGGATCCTTAGAATGTGGGAGGTACCTTCTTTCCTGAACCCTGATCAGCCAAACTCTTTGGAGATGGTGCTTATCGATGAGAAGGGTGTCAAGATTCATGCCACAGTTCGGAAGCAGTTGTTGTATGTTTTTCAGAAGAAGTTGGCTGAAGGAGATGCTTACAGGATGTCCTATTTTTCAGTTGCTCCCAACGTTGGTTATTATCGCACTACTACCCATTAA

>MsG0080047971.01.T02

ATGACTGATATTGGTGGTGATAACAGGAAGGTTAAGGTAGAATTCATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAGATTTAGCCGTCCGGGATATAAAGTCAAGTGACCCGTATGTTGTTTTGAACCTTGGCACACAGACTGTCCAGACAAGTGTAATGAAGAGTAATTTGAATCCAGTCTGGAATGAAGAACATATGTTGTCTGTTCCAGAGCATTATGGACAGTTGAAATTGAAAGTATTTGATCATGACACCTTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGTCACTGATAACATCTGTCATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATCGGAAAATGA
Protein sequence

>MsG0080047971.01.T01

MQELLQMKLPGSICVQDHMIKDGLHVINPSDDMDTVYAQQISPETSSCIISKKLSQIPSLGTSKVQTPKSIVKGKMKGAKLNFQPTYSMLVAPIETQLNAERLRFEQEEIMVALCGIFHIHLRFPMFHGCLLDEISLLPYLESINGCVALSLLFSVIFQSLAAVVPGREGWRFKVRILRMWEVPSFLNPDQPNSLEMVLIDEKGVKIHATVRKQLLYVFQKKLAEGDAYRMSYFSVAPNVGYYRTTTH*

>MsG0080047971.01.T02

MTDIGGDNRKVKVEFIGMLKVKVIKGTDLAVRDIKSSDPYVVLNLGTQTVQTSVMKSNLNPVWNEEHMLSVPEHYGQLKLKVFDHDTFSADDIMGEADIDLQSLITSVMAFGDAGMFGDMQIGK*