AlfalfaGEDB | MsG0880044415.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044415.01

KEGG: K06692
GO: GO:0005488 GO:0043248
PFAM: PF10508

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044415.01.T01	XP_003628552.1	92.49	506	14	1	40	521	21	526	0	941

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044415.01.T01	G7LDS0	92.490	506	14	1	40	521	21	526	0.0	941

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0880044415.01	0.841410	4.833028e-58	7.095694e-55
MsG0080047944.01	MsG0880044415.01	0.812744	3.633349e-51	2.328887e-48
MsG0080047959.01	MsG0880044415.01	0.823669	1.222835e-53	1.059897e-50
MsG0080047971.01	MsG0880044415.01	0.808981	2.371175e-50	1.375254e-47
MsG0080048461.01	MsG0880044415.01	0.842857	2.001749e-58	3.074903e-55
MsG0080048462.01	MsG0880044415.01	0.844754	6.216625e-59	1.013682e-55
MsG0080048656.01	MsG0880044415.01	0.805395	1.362624e-49	7.200996e-47
MsG0080048764.01	MsG0880044415.01	0.830076	3.599550e-55	3.752668e-52
MsG0080048785.01	MsG0880044415.01	0.807595	4.681624e-50	2.618077e-47
MsG0080048804.01	MsG0880044415.01	0.841657	4.159692e-58	6.153623e-55

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044415.01.T01	MTR_8g061280	92.490	506	14	1	40	521	21	526	0.0	941
MsG0880044415.01.T01	MTR_8g058790	92.490	506	14	1	40	521	21	526	0.0	941
MsG0880044415.01.T01	MTR_4g109120	72.727	44	12	0	3	46	11	54	4.20e-15	71.2
MsG0880044415.01.T01	MTR_6g034845	64.286	56	13	1	4	59	5	53	1.30e-14	71.6
MsG0880044415.01.T01	MTR_7g029010	75.610	41	10	0	1	41	1	41	6.65e-14	66.6
MsG0880044415.01.T01	MTR_1g064310	77.500	40	9	0	1	40	1	40	1.19e-13	67.0
MsG0880044415.01.T01	MTR_8g028915	74.359	39	10	0	1	39	3	41	1.81e-12	62.4
MsG0880044415.01.T01	MTR_8g027050	52.239	67	24	2	3	68	5	64	1.04e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044415.01.T01	AT3G15180	53.162	506	208	4	40	521	19	519	2.23e-177	509
MsG0880044415.01.T01	AT3G15180	50.186	538	207	5	40	521	19	551	6.49e-172	497

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Find 116 sgRNAs with CRISPR-Local

Find 1305 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAGAGGTGGCAGCTG+GGG	0.541524	8:+41704256	MsG0880044415.01.T01:CDS
AAACTATTACGTAAAGAGTA+AGG	0.456385	8:-41718042	None:intergenic
AACTGCTTTCATCAATAATT+AGG	0.242205	8:+41706624	MsG0880044415.01.T01:CDS
AACTTGATAAGGAGTGGAAG+AGG	0.505603	8:-41698720	None:intergenic
AAGATACGGACCCATTCCTA+CGG	0.635459	8:-41717909	None:intergenic
AAGTAGGTTTAAACTGCACA+TGG	0.614689	8:-41704842	None:intergenic
AAGTGGAAGGCTACTATCCA+AGG	0.552961	8:+41706782	MsG0880044415.01.T01:CDS
AATCTCATCCCCGTCCCCGA+CGG	0.522846	8:-41698094	None:intergenic
AATTGTCAAGATTCTCCAGA+AGG	0.559293	8:-41701806	None:intergenic
ACAGAACTAGTGCAGTTTGT+AGG	0.510135	8:-41698935	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCTGATGTCATCATT+TGG	-	Chr8:41711964-41711983	None:intergenic	30.0%
AAAACAATCTCATCATAGTG+TGG	-	Chr8:41700513-41700532	None:intergenic	30.0%
AAAACTCATGATGACACTTA+GGG	+	Chr8:41713092-41713111	MsG0880044415.01.T01:intron	30.0%
AAAACTCGATAGTTATAGCT+TGG	-	Chr8:41714419-41714438	None:intergenic	30.0%
AAAATGATATCAGTTCGGTT+TGG	-	Chr8:41701083-41701102	None:intergenic	30.0%
AAACTCAACAAGTTTCAGTA+TGG	+	Chr8:41713314-41713333	MsG0880044415.01.T01:intron	30.0%
AAATGGACATACAAACAAAG+AGG	-	Chr8:41707183-41707202	None:intergenic	30.0%
AAATGTTGTTCACAGTTGAT+TGG	+	Chr8:41711864-41711883	MsG0880044415.01.T01:intron	30.0%
AACAGCAATCATGAAGAATA+CGG	-	Chr8:41704402-41704421	None:intergenic	30.0%
AAGAAGAAGAAGAAGAAAGA+GGG	-	Chr8:41698457-41698476	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	41698073	41718216	41698073	ID=MsG0880044415.01;Name=MsG0880044415.01
Chr8	mRNA	41698073	41718216	41698073	ID=MsG0880044415.01.T01;Parent=MsG0880044415.01;Name=MsG0880044415.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0.86\|0.93\|0.93\|1\|1\|16\|228\|521
Chr8	exon	41698073	41698190	41698073	ID=MsG0880044415.01.T01:exon:17066;Parent=MsG0880044415.01.T01
Chr8	exon	41698676	41698739	41698676	ID=MsG0880044415.01.T01:exon:17067;Parent=MsG0880044415.01.T01
Chr8	exon	41698905	41699013	41698905	ID=MsG0880044415.01.T01:exon:17068;Parent=MsG0880044415.01.T01
Chr8	exon	41699110	41699172	41699110	ID=MsG0880044415.01.T01:exon:17069;Parent=MsG0880044415.01.T01
Chr8	exon	41701798	41701901	41701798	ID=MsG0880044415.01.T01:exon:17070;Parent=MsG0880044415.01.T01
Chr8	exon	41704256	41704322	41704256	ID=MsG0880044415.01.T01:exon:17071;Parent=MsG0880044415.01.T01
Chr8	exon	41704778	41704939	41704778	ID=MsG0880044415.01.T01:exon:17072;Parent=MsG0880044415.01.T01
Chr8	exon	41706572	41706645	41706572	ID=MsG0880044415.01.T01:exon:17073;Parent=MsG0880044415.01.T01
Chr8	exon	41706737	41706834	41706737	ID=MsG0880044415.01.T01:exon:17074;Parent=MsG0880044415.01.T01
Chr8	exon	41708628	41708735	41708628	ID=MsG0880044415.01.T01:exon:17075;Parent=MsG0880044415.01.T01
Chr8	exon	41711545	41711651	41711545	ID=MsG0880044415.01.T01:exon:17076;Parent=MsG0880044415.01.T01
Chr8	exon	41715724	41715861	41715724	ID=MsG0880044415.01.T01:exon:17077;Parent=MsG0880044415.01.T01
Chr8	exon	41716814	41716861	41716814	ID=MsG0880044415.01.T01:exon:17078;Parent=MsG0880044415.01.T01
Chr8	exon	41717432	41717546	41717432	ID=MsG0880044415.01.T01:exon:17079;Parent=MsG0880044415.01.T01
Chr8	exon	41717675	41717775	41717675	ID=MsG0880044415.01.T01:exon:17080;Parent=MsG0880044415.01.T01
Chr8	exon	41717899	41718216	41717899	ID=MsG0880044415.01.T01:exon:17081;Parent=MsG0880044415.01.T01
Chr8	CDS	41698073	41698190	41698073	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41698676	41698739	41698676	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41698905	41699013	41698905	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41699110	41699172	41699110	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41701798	41701901	41701798	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41704256	41704322	41704256	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41704778	41704939	41704778	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41706572	41706645	41706572	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41706737	41706834	41706737	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41708628	41708735	41708628	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41711545	41711651	41711545	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41715724	41715861	41715724	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41716814	41716861	41716814	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41717432	41717546	41717432	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41717675	41717775	41717675	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	CDS	41717899	41717988	41717899	ID=MsG0880044415.01.T01:cds;Parent=MsG0880044415.01.T01
Chr8	three_prime_UTR	41717989	41718216	41717989	ID=MsG0880044415.01.T01:three_prime_utr;Parent=MsG0880044415.01.T01

Gene Sequence

>MsG0880044415.01.T01

ATGTGGATGGGATACCCGAACCCGTCGGGGACGGGGATGAGATTCAACTTCTTATCCCCGTTGGATATGGGTAGGGTAACAGGTAAGTATATGAGAATCGGGGATGAGGATGAGGAAGGTTCTCACAGTGATGATTCCGCTGCAGATTTTCTCAATCGCTTCCCTCTTCCACTCCTTATCAATGCATTACAGACTCAATTTGATGTACCTGGCCTACAAACTGCACTAGTTCTGTGCCTTGAAAGGTTATTCAAAACAAAGTTCGGTGCTTCTCTCATTCCACAGTACATGCAATTTGTTCAAGTTGGTCTGCAGGCAGATTCTCAAGCAGTCAGATCCTTAGCTTGCAAAATAGTCACTTCCCTTCTGGAGAATCTTGACAATTCTTACACAGTTGCTTCTCATCTTATTAAAGAATTCAACATATATCCACTTTTGCTTGATTGCCTTATCAATGGAAACGAAGAGGTGGCAGCTGGGGCAATCAATGCAATAAAAAAGTTGGCTAGTTTTTCTGAAGGCCTGGGTCGAGTTCGTGTATTGGCTTTGGTGGTGAAGCTTTTCTCTGTATCTACGTCAGCAGCATCTGCCATGTGCAGTTTAAACCTACTTAAACTGTTGGAAGCAGAAATCAGAAGTACAGATGATACCCTTGTAACTTTAAGTGTTTTTGAGCTGCTCTATGAGCTAGCAGAGGTTGAGCATGGTACAGAATTTTTGTCAAAGACGAGCCTCTTTCAACTGCTTTCATCAATAATTAGCGACGATTCCAAGGATTCAATTTTAAGATCAAGAGCAATGATGATAAGTGGAAGGCTACTATCCAAGGAAAATACATACTCCTTCATAGATGAACCATGTGCTAAAATTGTTATTTCATCCATTGATGGTAGACTTCAGTCCTTGGACCCTTCAAATAAAGATGAATTTGAAACTGCACTTGAATCGTTGGGTCAAATAGGATTAACTATCAGAGGAGCTAAATTACTACTCTCAGGCACATCACCTGCTGCTAGACATGCTATTGATGCTGCTTTTGATCGACAAGGACCAGAAAGGCATGGTAGACAACTGGCTGCACTGCATGCTCTAGGAAACATCTCGGGTGAAACCAGATCTGAGAATGACGTCATACTTGATGCTGAAGCAGAAGAAAACCTACTTCGCTTACTTTATGAAACAGCATCCAGGAGCTCAAAGCTGACACCATCGGGTCTATTTCTATCAGTTTTGCAGCAAGATTCAGAAATCCGTATAGCGGGTTATAGAATGATAAGTGGATTGGTGTCTCGACCGTGGTGCTTGATGGAGATATGCTCAAGACAAGAGATTATAGATATTGTGACCGACCCAAGTACTGAAACTACAAAAATAGGAATGGAAGCTAGATATAACTGCTGCATGCGGATAAACAAATCACTGACGCAGTCAAGTAGAGTCTCTGCTGATCCTGCTTTTGCAGGAATAGCTGCAAAGCTGCAAGAAGCCGTAGGAATGGGTCCGTATCTTCATCATCGAAAGCGTGTTGAAGCTCAACCTATTGTGATGACGGCTGATAGATTTTAG

Protein sequence

>MsG0880044415.01.T01

MWMGYPNPSGTGMRFNFLSPLDMGRVTGKYMRIGDEDEEGSHSDDSAADFLNRFPLPLLINALQTQFDVPGLQTALVLCLERLFKTKFGASLIPQYMQFVQVGLQADSQAVRSLACKIVTSLLENLDNSYTVASHLIKEFNIYPLLLDCLINGNEEVAAGAINAIKKLASFSEGLGRVRVLALVVKLFSVSTSAASAMCSLNLLKLLEAEIRSTDDTLVTLSVFELLYELAEVEHGTEFLSKTSLFQLLSSIISDDSKDSILRSRAMMISGRLLSKENTYSFIDEPCAKIVISSIDGRLQSLDPSNKDEFETALESLGQIGLTIRGAKLLLSGTSPAARHAIDAAFDRQGPERHGRQLAALHALGNISGETRSENDVILDAEAEENLLRLLYETASRSSKLTPSGLFLSVLQQDSEIRIAGYRMISGLVSRPWCLMEICSRQEIIDIVTDPSTETTKIGMEARYNCCMRINKSLTQSSRVSADPAFAGIAAKLQEAVGMGPYLHHRKRVEAQPIVMTADRF*