AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035346.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035346.01.T01 MTR_6g082620 81.931 321 31 6 1 299 1 316 6.50e-161 452
MsG0680035346.01.T01 MTR_8g106240 51.887 318 115 13 7 303 14 314 1.21e-81 251
MsG0680035346.01.T01 MTR_8g106240 54.274 234 83 11 7 233 14 230 9.86e-59 188
MsG0680035346.01.T01 MTR_8g106240 54.506 233 82 11 7 232 14 229 3.60e-58 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035346.01.T01 AT1G73760 35.588 340 144 15 4 299 15 323 2.06e-35 131
MsG0680035346.01.T01 AT1G17970 32.743 339 165 15 4 299 6 324 2.01e-25 104
MsG0680035346.01.T01 AT1G73760 37.339 233 92 11 4 206 15 223 3.41e-24 99.8
MsG0680035346.01.T01 AT1G17970 32.510 243 122 11 4 219 6 233 1.34e-12 67.0

Find 56 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATGCCTTAATTTGTTTC+TGG 0.176603 6:+102858363 None:intergenic
TTAAATATGAAACTTTAATT+TGG 0.181580 6:+102854601 None:intergenic
ATGACAAACTTTCTTGATTT+AGG 0.185666 6:+102856349 None:intergenic
CGTCGTGGATTAGAGTCTTT+TGG 0.281440 6:-102856294 MsG0680035346.01.T01:CDS
GCAGGAAGTGGATTGGATTA+AGG 0.294256 6:+102858306 None:intergenic
GGAAAAGAGAGTGGAGATAC+TGG 0.302656 6:+102858279 None:intergenic
TGGCAGCGTTCATCTTATTT+TGG 0.312818 6:-102856387 MsG0680035346.01.T01:intron
GGATGCCTTAATTTGTTTCT+GGG 0.333653 6:+102858364 None:intergenic
TCAAGAGGAAAACTTGATAA+TGG 0.337233 6:-102857917 MsG0680035346.01.T01:CDS
AGTGGAGATACTGGATTTGC+AGG 0.347220 6:+102858288 None:intergenic
ACTGTCATGTGTGGTTTCAT+TGG 0.368524 6:+102858237 None:intergenic
TTCATGTGTCCTGTGATAAC+AGG 0.376347 6:+102858397 None:intergenic
AGAATTGGTTATGTGAAAAC+TGG 0.378566 6:-102854742 MsG0680035346.01.T01:CDS
GTTTGGTGTGGACCTGGAAC+TGG 0.389369 6:-102858004 MsG0680035346.01.T01:CDS
CAGGATGTTTGGTGTGGACC+TGG 0.408347 6:-102858010 MsG0680035346.01.T01:CDS
CTTGAGCTGGGAGAGAGAAT+TGG 0.417630 6:-102854757 MsG0680035346.01.T01:CDS
GGATGTGTTGTTTGAGAAAG+TGG 0.430164 6:+102858258 None:intergenic
GATACTGGATTTGCAGGAAG+TGG 0.432978 6:+102858294 None:intergenic
TTGCAAACTCACTTGACAAA+TGG 0.433202 6:+102854627 None:intergenic
AGTTTGATCAGTTTCTGAAA+TGG 0.433377 6:+102858342 None:intergenic
TCAGATAAGAATCCAGTTCC+AGG 0.441033 6:+102857992 None:intergenic
TGAAACATGATATGAAACTT+TGG 0.442477 6:+102858521 None:intergenic
GCTTCGAATGTTTCTTCTGA+TGG 0.448426 6:-102856249 MsG0680035346.01.T01:CDS
CACTGCCGGTACATCACAAC+AGG 0.454642 6:-102858146 MsG0680035346.01.T01:CDS
TGGATTTGCAGGAAGTGGAT+TGG 0.454878 6:+102858299 None:intergenic
GAAGTCCCAGAAACAAATTA+AGG 0.465120 6:-102858369 MsG0680035346.01.T01:CDS
GTTTGATCAGTTTCTGAAAT+GGG 0.468581 6:+102858343 None:intergenic
TGATATGAAACTTTGGTTTG+TGG 0.470333 6:+102858528 None:intergenic
ATTGGCAAGGGAAGAAGAAC+AGG 0.472226 6:-102858090 MsG0680035346.01.T01:CDS
AGAAAGAATGTTTCTTCAAG+AGG 0.472459 6:-102857932 MsG0680035346.01.T01:CDS
TCTGATGGTATTGCTGAGGT+TGG 0.475516 6:-102856234 MsG0680035346.01.T01:CDS
TTATCACAGGACACATGAAA+TGG 0.480387 6:-102858393 MsG0680035346.01.T01:CDS
AGAGGACTCGGTTGCACTGC+CGG 0.486568 6:-102858160 MsG0680035346.01.T01:CDS
CTTCCCTTGCCAATCTGCAG+AGG 0.521246 6:+102858099 None:intergenic
GAATTCAGATTGTCTGCAGT+CGG 0.534224 6:-102856181 MsG0680035346.01.T01:intron
TGAGAAAGTGGAAAAGAGAG+TGG 0.536359 6:+102858270 None:intergenic
TGCTGCTGCTGATGTTTCTG+TGG 0.541957 6:-102857969 MsG0680035346.01.T01:CDS
GTAACAGCAATTGCTTGAGC+TGG 0.542807 6:-102854770 MsG0680035346.01.T01:intron
TGATTCGATCCTCTGCAGAT+TGG 0.544628 6:-102858108 MsG0680035346.01.T01:CDS
ATCACAACAGGTGTCTGTAC+CGG 0.545837 6:-102858134 MsG0680035346.01.T01:CDS
TTCTTCTGATGGTATTGCTG+AGG 0.549937 6:-102856238 MsG0680035346.01.T01:CDS
AGACACCTGTTGTGATGTAC+CGG 0.555643 6:+102858141 None:intergenic
CGATCCTCTGCAGATTGGCA+AGG 0.563656 6:-102858103 MsG0680035346.01.T01:CDS
TTTACTGCATCAACCTTCAG+AGG 0.568041 6:-102858178 MsG0680035346.01.T01:CDS
GAATTCAAAGAAATGAAAAG+AGG 0.573606 6:+102856198 None:intergenic
GAAAACTTGATAATGGTGAA+AGG 0.574739 6:-102857910 MsG0680035346.01.T01:CDS
TAAACCATGCCTGTTATCAC+AGG 0.578988 6:-102858406 MsG0680035346.01.T01:exon
GATCCTCTGCAGATTGGCAA+GGG 0.591294 6:-102858102 MsG0680035346.01.T01:CDS
ATGTCATGGTGTTGATGATG+TGG 0.591462 6:-102858038 MsG0680035346.01.T01:CDS
AGGAACAACAAAACATGTCA+TGG 0.600676 6:-102858052 MsG0680035346.01.T01:CDS
AGTGCAACCGAGTCCTCTGA+AGG 0.607271 6:+102858165 None:intergenic
GCATCAACCTTCAGAGGACT+CGG 0.610375 6:-102858172 MsG0680035346.01.T01:CDS
TAACAGCAATTGCTTGAGCT+GGG 0.635760 6:-102854769 MsG0680035346.01.T01:intron
GCAGAGGATCGAATCACTGC+CGG 0.636222 6:+102858115 None:intergenic
TGAAAGGATAACACATAGAG+AGG 0.638029 6:-102857894 MsG0680035346.01.T01:intron
GTGTCCTGTGATAACAGGCA+TGG 0.666826 6:+102858402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAAATTTTATATGTGT+TGG - Chr6:102856781-102856800 MsG0680035346.01.T01:intron 10.0%
!! AAACTAATAATCAAAATCAA+AGG + Chr6:102855530-102855549 None:intergenic 15.0%
!! AATAAAAAAACTTAACATCT+AGG + Chr6:102857091-102857110 None:intergenic 15.0%
!! ATCAATTAATCAAATAATCA+TGG + Chr6:102855423-102855442 None:intergenic 15.0%
!! TTGAAGATAATGAAATTTAA+AGG - Chr6:102857902-102857921 MsG0680035346.01.T01:CDS 15.0%
!!! AAAATACGAAATTTGAAATA+TGG - Chr6:102857120-102857139 MsG0680035346.01.T01:intron 15.0%
!!! ATTGATTTTTATGCATTATA+TGG - Chr6:102855437-102855456 MsG0680035346.01.T01:intron 15.0%
!!! TATTTTTTTCTTTCCTTTTT+TGG - Chr6:102857712-102857731 MsG0680035346.01.T01:intron 15.0%
!!! TTTGCATACTTATTTTATTT+TGG - Chr6:102857659-102857678 MsG0680035346.01.T01:intron 15.0%
!!! TTTTATAAGAAGATATTGAA+AGG + Chr6:102854700-102854719 None:intergenic 15.0%
!! AAAAATGTCATTATTGCAAA+GGG + Chr6:102855894-102855913 None:intergenic 20.0%
!! AACTAAAGACATTCTATATT+TGG + Chr6:102857636-102857655 None:intergenic 20.0%
!! ATGTAAAATGTAACGAAATT+CGG + Chr6:102856388-102856407 None:intergenic 20.0%
!! TAAAAATGTCATTATTGCAA+AGG + Chr6:102855895-102855914 None:intergenic 20.0%
!! TAAATTTACATCATACAAGT+CGG - Chr6:102856241-102856260 MsG0680035346.01.T01:CDS 20.0%
!! TAATATTGTAATCTTCACTA+TGG - Chr6:102856267-102856286 MsG0680035346.01.T01:CDS 20.0%
!! TGAGTTATTCATATCATTAT+AGG - Chr6:102857320-102857339 MsG0680035346.01.T01:intron 20.0%
!!! AATTTTATCTTTAGTGCTTT+AGG - Chr6:102857411-102857430 MsG0680035346.01.T01:intron 20.0%
!!! AGTTCTGGTTTATTATATAA+TGG - Chr6:102857774-102857793 MsG0680035346.01.T01:intron 20.0%
!!! ATACGGTTAACATTATTTTT+TGG - Chr6:102855477-102855496 MsG0680035346.01.T01:intron 20.0%
!!! ATTATAGGTTATTTGTTGTT+TGG - Chr6:102857335-102857354 MsG0680035346.01.T01:intron 20.0%
!!! CATAAACTTTTTCTGATTTT+AGG + Chr6:102857508-102857527 None:intergenic 20.0%
!!! GATTTTGATTATTAGTTTGT+AGG - Chr6:102855532-102855551 MsG0680035346.01.T01:intron 20.0%
!!! GTCTTTTATTAATTCCATTT+TGG - Chr6:102855582-102855601 MsG0680035346.01.T01:intron 20.0%
!!! TTAGATTTAGTTTTGTAGAA+TGG + Chr6:102854625-102854644 None:intergenic 20.0%
!!! TTATTTTAATTTGAGTGCTA+TGG - Chr6:102857530-102857549 MsG0680035346.01.T01:intron 20.0%
!!! TTTTATACTTACTATTGTCA+TGG - Chr6:102858031-102858050 MsG0680035346.01.T01:CDS 20.0%
!!! TTTTCTTGATTGATTTATTG+TGG - Chr6:102856559-102856578 MsG0680035346.01.T01:intron 20.0%
! AAATTTACATCATACAAGTC+GGG - Chr6:102856242-102856261 MsG0680035346.01.T01:CDS 25.0%
! AACAATCTATTGGATTTCTA+AGG - Chr6:102858128-102858147 MsG0680035346.01.T01:CDS 25.0%
! AAGCTATATTCAAAAGCTAA+GGG - Chr6:102855966-102855985 MsG0680035346.01.T01:intron 25.0%
! ATGACAAACTTTCTTGATTT+AGG + Chr6:102856842-102856861 None:intergenic 25.0%
! ATGACATACATGTTAATGAT+TGG - Chr6:102856684-102856703 MsG0680035346.01.T01:intron 25.0%
! ATGAGATGAAAAACAACATA+AGG - Chr6:102858480-102858499 MsG0680035346.01.T01:five_prime_UTR 25.0%
! CCTTGATTCATTATAATAGA+GGG - Chr6:102856077-102856096 MsG0680035346.01.T01:intron 25.0%
! GAATTCAAAGAAATGAAAAG+AGG + Chr6:102856993-102857012 None:intergenic 25.0%
! TAAAAGACCATAATCTATCA+AGG + Chr6:102855570-102855589 None:intergenic 25.0%
! TAAGCTATATTCAAAAGCTA+AGG - Chr6:102855965-102855984 MsG0680035346.01.T01:intron 25.0%
! TCCTTGATTCATTATAATAG+AGG - Chr6:102856076-102856095 MsG0680035346.01.T01:intron 25.0%
! TGAAACATGATATGAAACTT+TGG + Chr6:102854670-102854689 None:intergenic 25.0%
! TTACATCCATAATCCAAAAA+AGG + Chr6:102857728-102857747 None:intergenic 25.0%
! TTTCCGATATAAAAATGTCA+GGG - Chr6:102856109-102856128 MsG0680035346.01.T01:intron 25.0%
! TTTGTTCAATTTAAGCTAGT+AGG - Chr6:102855850-102855869 MsG0680035346.01.T01:intron 25.0%
!! AAATTCTGGAAACAATCTAT+TGG - Chr6:102858118-102858137 MsG0680035346.01.T01:CDS 25.0%
!! ATAAAAATAGAGAGCCTTAT+TGG + Chr6:102858017-102858036 None:intergenic 25.0%
!! TAGCTTTTGAATATAGCTTA+TGG + Chr6:102855965-102855984 None:intergenic 25.0%
!!! ACGTATGACTTTTTAGAAAT+TGG + Chr6:102856532-102856551 None:intergenic 25.0%
!!! ATCACTAGACTTATTTTCAA+GGG + Chr6:102856587-102856606 None:intergenic 25.0%
!!! GTTATTTGTTGTTTGGAATT+TGG - Chr6:102857342-102857361 MsG0680035346.01.T01:intron 25.0%
!!! TAAAAATAGAGAGCCTTATT+GGG + Chr6:102858016-102858035 None:intergenic 25.0%
!!! TCAAGAAAGTTTGTCATTTT+TGG - Chr6:102856845-102856864 MsG0680035346.01.T01:intron 25.0%
!!! TGTTCTTTTTTGTTCTGTTT+TGG + Chr6:102854979-102854998 None:intergenic 25.0%
!!! TGTTGATAATATGTCATATG+AGG - Chr6:102857979-102857998 MsG0680035346.01.T01:CDS 25.0%
!!! TTCTTTCCTTTTTTGGATTA+TGG - Chr6:102857719-102857738 MsG0680035346.01.T01:intron 25.0%
AAAAAATGCATTCACACACA+CGG - Chr6:102855619-102855638 MsG0680035346.01.T01:intron 30.0%
AAAATTATGAGGGACCAAAA+TGG - Chr6:102856178-102856197 MsG0680035346.01.T01:intron 30.0%
AAAGGGCCCAAAAAAAAAAT+CGG + Chr6:102855877-102855896 None:intergenic 30.0%
AAAGTCTAATGTTGATGTGA+TGG - Chr6:102855782-102855801 MsG0680035346.01.T01:intron 30.0%
AAGATCACGAGTTTAAATTC+TGG - Chr6:102858104-102858123 MsG0680035346.01.T01:CDS 30.0%
AATTTAAACTCGTGATCTTC+AGG + Chr6:102858103-102858122 None:intergenic 30.0%
AATTTACATCATACAAGTCG+GGG - Chr6:102856243-102856262 MsG0680035346.01.T01:CDS 30.0%
ACCTATCACTCATAACAAAA+AGG - Chr6:102856323-102856342 MsG0680035346.01.T01:CDS 30.0%
ACTAACAAGCCTTAGTTAAT+CGG + Chr6:102857751-102857770 None:intergenic 30.0%
ACTATTGTCATGGTTATCAA+GGG - Chr6:102858041-102858060 MsG0680035346.01.T01:CDS 30.0%
ACTTCTAGCAGATTAGTATA+TGG - Chr6:102857600-102857619 MsG0680035346.01.T01:intron 30.0%
AGAAAGAATGTTTCTTCAAG+AGG - Chr6:102855256-102855275 MsG0680035346.01.T01:intron 30.0%
AGAATTGGTTATGTGAAAAC+TGG - Chr6:102858446-102858465 MsG0680035346.01.T01:five_prime_UTR 30.0%
ATTTAAAGGAGCTAGACTAA+TGG - Chr6:102857916-102857935 MsG0680035346.01.T01:CDS 30.0%
CAATAAGGAATCTTAGCTAT+TGG - Chr6:102858202-102858221 MsG0680035346.01.T01:CDS 30.0%
CACAAATTTCGATGAACATA+TGG + Chr6:102858391-102858410 None:intergenic 30.0%
CACTATGGTATATAAAGACA+AGG - Chr6:102856282-102856301 MsG0680035346.01.T01:CDS 30.0%
CATATGGATCAAAATGCAAA+CGG + Chr6:102858375-102858394 None:intergenic 30.0%
CATATGTTCATCGAAATTTG+TGG - Chr6:102858389-102858408 MsG0680035346.01.T01:CDS 30.0%
CCCTCTATTATAATGAATCA+AGG + Chr6:102856080-102856099 None:intergenic 30.0%
CTTATGCTGGAATTGTAATA+CGG - Chr6:102855460-102855479 MsG0680035346.01.T01:intron 30.0%
GAGCAGTCAAAAAATTATGA+GGG - Chr6:102856168-102856187 MsG0680035346.01.T01:intron 30.0%
GGTAAGACAATATATGTCTT+TGG - Chr6:102858149-102858168 MsG0680035346.01.T01:CDS 30.0%
GTTTCCGATATAAAAATGTC+AGG - Chr6:102856108-102856127 MsG0680035346.01.T01:intron 30.0%
TACTATTGTCATGGTTATCA+AGG - Chr6:102858040-102858059 MsG0680035346.01.T01:CDS 30.0%
TAGTCGCTGTTACTATATAA+TGG + Chr6:102856480-102856499 None:intergenic 30.0%
TCAAGAGGAAAACTTGATAA+TGG - Chr6:102855271-102855290 MsG0680035346.01.T01:intron 30.0%
TCATGTCTTAGTGTCATATT+CGG + Chr6:102855648-102855667 None:intergenic 30.0%
TGAGCAGTCAAAAAATTATG+AGG - Chr6:102856167-102856186 MsG0680035346.01.T01:intron 30.0%
TTCTCTTTAACAAGCCAAAA+TGG + Chr6:102855599-102855618 None:intergenic 30.0%
TTGTTATGAGTGATAGGTTA+GGG + Chr6:102856321-102856340 None:intergenic 30.0%
TTTAAAGGAGCTAGACTAAT+GGG - Chr6:102857917-102857936 MsG0680035346.01.T01:CDS 30.0%
! AGTTTGATCAGTTTCTGAAA+TGG + Chr6:102854849-102854868 None:intergenic 30.0%
! CATCCCTGACATTTTTATAT+CGG + Chr6:102856115-102856134 None:intergenic 30.0%
! CATTGTTGTTGTTGACAAAA+TGG - Chr6:102857272-102857291 MsG0680035346.01.T01:intron 30.0%
! TTTATCTTTAGTGCTTTAGG+AGG - Chr6:102857414-102857433 MsG0680035346.01.T01:intron 30.0%
! TTTGTTATGAGTGATAGGTT+AGG + Chr6:102856322-102856341 None:intergenic 30.0%
!! GAAAACTTGATAATGGTGAA+AGG - Chr6:102855278-102855297 MsG0680035346.01.T01:intron 30.0%
!! GATCACTAGACTTATTTTCA+AGG + Chr6:102856588-102856607 None:intergenic 30.0%
!! GTTTGATCAGTTTCTGAAAT+GGG + Chr6:102854848-102854867 None:intergenic 30.0%
!! TCACTAGACTTATTTTCAAG+GGG + Chr6:102856586-102856605 None:intergenic 30.0%
!! TCCTTTTTGTTATGAGTGAT+AGG + Chr6:102856327-102856346 None:intergenic 30.0%
!! TGATATGAAACTTTGGTTTG+TGG + Chr6:102854663-102854682 None:intergenic 30.0%
!! TTAGAGTCTTTTGGAAATAG+TGG - Chr6:102856903-102856922 MsG0680035346.01.T01:intron 30.0%
!! TTTTGATTCATGTGTGTTTG+TGG - Chr6:102856714-102856733 MsG0680035346.01.T01:intron 30.0%
!!! ACTGTTCTAGCTGATTTTTT+TGG - Chr6:102857575-102857594 MsG0680035346.01.T01:intron 30.0%
!!! AGTAGGACCGATTTTTTTTT+TGG - Chr6:102855867-102855886 MsG0680035346.01.T01:intron 30.0%
!!! GTAGGACCGATTTTTTTTTT+GGG - Chr6:102855868-102855887 MsG0680035346.01.T01:intron 30.0%
AAACGGTATGTCAATAGCTT+GGG + Chr6:102858358-102858377 None:intergenic 35.0%
AACTTAACATCTAGGCCATA+TGG + Chr6:102857083-102857102 None:intergenic 35.0%
AATGTAGTTTCCACGCAATA+AGG - Chr6:102858187-102858206 MsG0680035346.01.T01:CDS 35.0%
ACAATATATGTCTTTGGACC+TGG - Chr6:102858155-102858174 MsG0680035346.01.T01:CDS 35.0%
ACAGGAAAAAGAAGAACAGA+AGG - Chr6:102855116-102855135 MsG0680035346.01.T01:intron 35.0%
ACCATAATCTATCAAGGACA+AGG + Chr6:102855564-102855583 None:intergenic 35.0%
AGGAACAACAAAACATGTCA+TGG - Chr6:102855136-102855155 MsG0680035346.01.T01:intron 35.0%
ATGCATTATATGGCTTATGC+TGG - Chr6:102855447-102855466 MsG0680035346.01.T01:intron 35.0%
ATTTACATCATACAAGTCGG+GGG - Chr6:102856244-102856263 MsG0680035346.01.T01:CDS 35.0%
GAAGTCCCAGAAACAAATTA+AGG - Chr6:102854819-102854838 MsG0680035346.01.T01:intron 35.0%
TCCTTGTCCTTGATAGATTA+TGG - Chr6:102855560-102855579 MsG0680035346.01.T01:intron 35.0%
TCGACCACATTCTAAATCAA+TGG + Chr6:102858285-102858304 None:intergenic 35.0%
TGAAAGGATAACACATAGAG+AGG - Chr6:102855294-102855313 MsG0680035346.01.T01:intron 35.0%
TGACACTAAGACATGAACAT+TGG - Chr6:102855652-102855671 MsG0680035346.01.T01:intron 35.0%
TGGATGTAACCGATTAACTA+AGG - Chr6:102857739-102857758 MsG0680035346.01.T01:intron 35.0%
TTAAAGGAGCTAGACTAATG+GGG - Chr6:102857918-102857937 MsG0680035346.01.T01:CDS 35.0%
TTATCACAGGACACATGAAA+TGG - Chr6:102854795-102854814 MsG0680035346.01.T01:intron 35.0%
TTGCAAACTCACTTGACAAA+TGG + Chr6:102858564-102858583 None:intergenic 35.0%
TTTGTTGGATCAAGACCATA+TGG - Chr6:102857065-102857084 MsG0680035346.01.T01:intron 35.0%
! TTGTGAGTGAAGAACCATTT+TGG + Chr6:102856195-102856214 None:intergenic 35.0%
!! ATGTGGATTTTCAGGATGTT+TGG - Chr6:102855167-102855186 MsG0680035346.01.T01:intron 35.0%
!! GATTAACTAAGGCTTGTTAG+TGG - Chr6:102857750-102857769 MsG0680035346.01.T01:intron 35.0%
!! GGATGCCTTAATTTGTTTCT+GGG + Chr6:102854827-102854846 None:intergenic 35.0%
!! TCGACCATTGATTTAGAATG+TGG - Chr6:102858278-102858297 MsG0680035346.01.T01:CDS 35.0%
!!! AGCGTTCATCTTATTTTGGA+AGG - Chr6:102856805-102856824 MsG0680035346.01.T01:intron 35.0%
!!! GTTTTGTTTCGTGGTTGTTT+TGG - Chr6:102856736-102856755 MsG0680035346.01.T01:intron 35.0%
!!! TGAGATGTCGTTTTCATACT+AGG - Chr6:102856044-102856063 MsG0680035346.01.T01:intron 35.0%
!!! TGTTGATGATGTGGATTTTC+AGG - Chr6:102855159-102855178 MsG0680035346.01.T01:intron 35.0%
AATTGTGTCTACTTCTCCGA+CGG + Chr6:102856363-102856382 None:intergenic 40.0%
ACACGAATTCAGATTGTCTG+TGG + Chr6:102857207-102857226 None:intergenic 40.0%
ACTGTCATGTGTGGTTTCAT+TGG + Chr6:102854954-102854973 None:intergenic 40.0%
AGCTAAGATTCCTTATTGCG+TGG + Chr6:102858200-102858219 None:intergenic 40.0%
ATGTGGCTAATACGGAATGT+GGG - Chr6:102857172-102857191 MsG0680035346.01.T01:intron 40.0%
CAAACGGTATGTCAATAGCT+TGG + Chr6:102858359-102858378 None:intergenic 40.0%
CACGTGATCAATTTAGAGAC+TGG - Chr6:102857948-102857967 MsG0680035346.01.T01:CDS 40.0%
CAGACGACTTAGATTACACA+AGG - Chr6:102858233-102858252 MsG0680035346.01.T01:CDS 40.0%
GAATTCAGATTGTCTGCAGT+CGG - Chr6:102857007-102857026 MsG0680035346.01.T01:intron 40.0%
GAATTCAGATTGTCTGTGGT+CGG + Chr6:102857203-102857222 None:intergenic 40.0%
GAGACATTCATGATCATGCA+TGG - Chr6:102857237-102857256 MsG0680035346.01.T01:intron 40.0%
GCAACACAACAACATACATG+TGG + Chr6:102855710-102855729 None:intergenic 40.0%
GCTTCGAATGTTTCTTCTGA+TGG - Chr6:102856939-102856958 MsG0680035346.01.T01:intron 40.0%
GGTGAGTTCTTTACCCAATA+AGG - Chr6:102858000-102858019 MsG0680035346.01.T01:CDS 40.0%
GTCGAGATATGTAACTGCAT+GGG - Chr6:102858300-102858319 MsG0680035346.01.T01:CDS 40.0%
GTCGTTGGATCAAAATTGCA+CGG + Chr6:102857147-102857166 None:intergenic 40.0%
GTTGTGTTGCACACACATAT+CGG - Chr6:102855720-102855739 MsG0680035346.01.T01:intron 40.0%
TAAACCATGCCTGTTATCAC+AGG - Chr6:102854782-102854801 MsG0680035346.01.T01:intron 40.0%
TAAAGGAGCTAGACTAATGG+GGG - Chr6:102857919-102857938 MsG0680035346.01.T01:CDS 40.0%
TAACAGCAATTGCTTGAGCT+GGG - Chr6:102858419-102858438 MsG0680035346.01.T01:exon 40.0%
TCAGATAAGAATCCAGTTCC+AGG + Chr6:102855199-102855218 None:intergenic 40.0%
TGACTGCTCAATTCAATCTC+TGG + Chr6:102856157-102856176 None:intergenic 40.0%
TGAGAAAGTGGAAAAGAGAG+TGG + Chr6:102854921-102854940 None:intergenic 40.0%
TTCATGTGTCCTGTGATAAC+AGG + Chr6:102854794-102854813 None:intergenic 40.0%
TTCTTCTGATGGTATTGCTG+AGG - Chr6:102856950-102856969 MsG0680035346.01.T01:intron 40.0%
TTTACTGCATCAACCTTCAG+AGG - Chr6:102855010-102855029 MsG0680035346.01.T01:intron 40.0%
! ATTGGAAGCGTGTACGTATA+TGG + Chr6:102856514-102856533 None:intergenic 40.0%
! GATATTTTCACAACTCGTCG+TGG - Chr6:102856879-102856898 MsG0680035346.01.T01:intron 40.0%
!! ATGTCATGGTGTTGATGATG+TGG - Chr6:102855150-102855169 MsG0680035346.01.T01:intron 40.0%
!! GATTTTCAGGATGTTTGGTG+TGG - Chr6:102855172-102855191 MsG0680035346.01.T01:intron 40.0%
!! GGATGTGTTGTTTGAGAAAG+TGG + Chr6:102854933-102854952 None:intergenic 40.0%
!! GGGATGCCTTAATTTGTTTC+TGG + Chr6:102854828-102854847 None:intergenic 40.0%
!! TGGCAGCGTTCATCTTATTT+TGG - Chr6:102856801-102856820 MsG0680035346.01.T01:intron 40.0%
!!! GTGTTTGTGGTTTTGTTTCG+TGG - Chr6:102856727-102856746 MsG0680035346.01.T01:intron 40.0%
!!! GTTTTGGTTACTGTCATGTG+TGG + Chr6:102854963-102854982 None:intergenic 40.0%
AAAGGAGCTAGACTAATGGG+GGG - Chr6:102857920-102857939 MsG0680035346.01.T01:CDS 45.0%
AACTACATTGCAGGGAATCC+AGG + Chr6:102858176-102858195 None:intergenic 45.0%
AGACACCTGTTGTGATGTAC+CGG + Chr6:102855050-102855069 None:intergenic 45.0%
AGTGGAGATACTGGATTTGC+AGG + Chr6:102854903-102854922 None:intergenic 45.0%
ATCACAACAGGTGTCTGTAC+CGG - Chr6:102855054-102855073 MsG0680035346.01.T01:intron 45.0%
ATTGGCAAGGGAAGAAGAAC+AGG - Chr6:102855098-102855117 MsG0680035346.01.T01:intron 45.0%
GACCATCGATGTGGCTAATA+CGG - Chr6:102857164-102857183 MsG0680035346.01.T01:intron 45.0%
GATACTGGATTTGCAGGAAG+TGG + Chr6:102854897-102854916 None:intergenic 45.0%
GATGTGGCTAATACGGAATG+TGG - Chr6:102857171-102857190 MsG0680035346.01.T01:intron 45.0%
GGAAAAGAGAGTGGAGATAC+TGG + Chr6:102854912-102854931 None:intergenic 45.0%
GGTCGAGATATGTAACTGCA+TGG - Chr6:102858299-102858318 MsG0680035346.01.T01:CDS 45.0%
GTAACAGCAATTGCTTGAGC+TGG - Chr6:102858418-102858437 MsG0680035346.01.T01:exon 45.0%
GTCGGAGAAGTAGACACAAT+TGG - Chr6:102856362-102856381 MsG0680035346.01.T01:CDS 45.0%
TCTGATGGTATTGCTGAGGT+TGG - Chr6:102856954-102856973 MsG0680035346.01.T01:intron 45.0%
TGATTCGATCCTCTGCAGAT+TGG - Chr6:102855080-102855099 MsG0680035346.01.T01:intron 45.0%
TGCCAACTACAGAAATGCGA+GGG + Chr6:102857037-102857056 None:intergenic 45.0%
TGCGTGGAAACTACATTGCA+GGG + Chr6:102858184-102858203 None:intergenic 45.0%
TGGATTTGCAGGAAGTGGAT+TGG + Chr6:102854892-102854911 None:intergenic 45.0%
TGTCAATAGCTTGGGATGTG+AGG + Chr6:102858350-102858369 None:intergenic 45.0%
TGTGGCTAATACGGAATGTG+GGG - Chr6:102857173-102857192 MsG0680035346.01.T01:intron 45.0%
TTCCGTATTAGCCACATCGA+TGG + Chr6:102857169-102857188 None:intergenic 45.0%
TTGCGTGGAAACTACATTGC+AGG + Chr6:102858185-102858204 None:intergenic 45.0%
! CTCGTGATCTTCAGGTTACA+TGG + Chr6:102858095-102858114 None:intergenic 45.0%
!! AGGCTTGTTAGTGGAAGTTC+TGG - Chr6:102857759-102857778 MsG0680035346.01.T01:intron 45.0%
!! GCAGGAAGTGGATTGGATTA+AGG + Chr6:102854885-102854904 None:intergenic 45.0%
!! TACCGACTCTTAAGACCTGA+AGG + Chr6:102855758-102855777 None:intergenic 45.0%
!!! CGTCGTGGATTAGAGTCTTT+TGG - Chr6:102856894-102856913 MsG0680035346.01.T01:intron 45.0%
ACCCCTCGCATTTCTGTAGT+TGG - Chr6:102857032-102857051 MsG0680035346.01.T01:intron 50.0%
AGTAACTTTAGCGTGCGTCG+AGG + Chr6:102858071-102858090 None:intergenic 50.0%
CGCCTTCAGGTCTTAAGAGT+CGG - Chr6:102855753-102855772 MsG0680035346.01.T01:intron 50.0%
CTTGAGCTGGGAGAGAGAAT+TGG - Chr6:102858431-102858450 MsG0680035346.01.T01:five_prime_UTR 50.0%
GATCCTCTGCAGATTGGCAA+GGG - Chr6:102855086-102855105 MsG0680035346.01.T01:intron 50.0%
GCATCAACCTTCAGAGGACT+CGG - Chr6:102855016-102855035 MsG0680035346.01.T01:intron 50.0%
GCCAACTACAGAAATGCGAG+GGG + Chr6:102857036-102857055 None:intergenic 50.0%
GTGCCAACTACAGAAATGCG+AGG + Chr6:102857038-102857057 None:intergenic 50.0%
GTGGCTAATACGGAATGTGG+GGG - Chr6:102857174-102857193 MsG0680035346.01.T01:intron 50.0%
GTGTCCTGTGATAACAGGCA+TGG + Chr6:102854789-102854808 None:intergenic 50.0%
TGATCCAACGACCATCGATG+TGG - Chr6:102857155-102857174 MsG0680035346.01.T01:intron 50.0%
TTAGCCACATCGATGGTCGT+TGG + Chr6:102857162-102857181 None:intergenic 50.0%
! TGCTGCTGCTGATGTTTCTG+TGG - Chr6:102855219-102855238 MsG0680035346.01.T01:intron 50.0%
AGTGCAACCGAGTCCTCTGA+AGG + Chr6:102855026-102855045 None:intergenic 55.0%
CACTGCCGGTACATCACAAC+AGG - Chr6:102855042-102855061 MsG0680035346.01.T01:intron 55.0%
CGATCCTCTGCAGATTGGCA+AGG - Chr6:102855085-102855104 MsG0680035346.01.T01:intron 55.0%
CGGACATCAAACACGCCTTC+AGG - Chr6:102855740-102855759 MsG0680035346.01.T01:intron 55.0%
CTTCCCTTGCCAATCTGCAG+AGG + Chr6:102855092-102855111 None:intergenic 55.0%
GCAGAGGATCGAATCACTGC+CGG + Chr6:102855076-102855095 None:intergenic 55.0%
GTTGGCACGTCAGCGTTTGT+TGG - Chr6:102857050-102857069 MsG0680035346.01.T01:intron 55.0%
TCTACTTCTCCGACGGCAGA+GGG + Chr6:102856356-102856375 None:intergenic 55.0%
!! CAGGATGTTTGGTGTGGACC+TGG - Chr6:102855178-102855197 MsG0680035346.01.T01:intron 55.0%
!! GTTTGGTGTGGACCTGGAAC+TGG - Chr6:102855184-102855203 MsG0680035346.01.T01:intron 55.0%
GTCTACTTCTCCGACGGCAG+AGG + Chr6:102856357-102856376 None:intergenic 60.0%
! AGAGGACTCGGTTGCACTGC+CGG - Chr6:102855028-102855047 MsG0680035346.01.T01:intron 60.0%
GGAACTGCTCCCTCTGCCGT+CGG - Chr6:102856344-102856363 MsG0680035346.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 102854615 102858595 102854615 ID=MsG0680035346.01;Name=MsG0680035346.01
Chr6 mRNA 102854615 102858595 102854615 ID=MsG0680035346.01.T01;Parent=MsG0680035346.01;Name=MsG0680035346.01.T01;_AED=0.39;_eAED=0.43;_QI=173|0.5|0.33|1|1|1|3|0|306
Chr6 exon 102854615 102854785 102854615 ID=MsG0680035346.01.T01:exon:31423;Parent=MsG0680035346.01.T01
Chr6 exon 102856182 102856403 102856182 ID=MsG0680035346.01.T01:exon:31422;Parent=MsG0680035346.01.T01
Chr6 exon 102857895 102858595 102857895 ID=MsG0680035346.01.T01:exon:31421;Parent=MsG0680035346.01.T01
Chr6 five_prime_UTR 102858423 102858595 102858423 ID=MsG0680035346.01.T01:five_prime_utr;Parent=MsG0680035346.01.T01
Chr6 CDS 102857895 102858422 102857895 ID=MsG0680035346.01.T01:cds;Parent=MsG0680035346.01.T01
Chr6 CDS 102856182 102856403 102856182 ID=MsG0680035346.01.T01:cds;Parent=MsG0680035346.01.T01
Chr6 CDS 102854615 102854785 102854615 ID=MsG0680035346.01.T01:cds;Parent=MsG0680035346.01.T01
Gene Sequence

>MsG0680035346.01.T01

ATGCCTGTTATCACAGGACACATGAAATGGAGAAGTCCCAGAAACAAATTAAGGCATCCCATTTCAGAAACTGATCAAACTTCACAACTTTCTTCCTTAATCCAATCCACTTCCTGCAAATCCAGTATCTCCACTCTCTTTTCCACTTTCTCAAACAACACATCCAATGAAACCACACATGACAGTAACCAAAACAGAACAAAAAAGAACAACAATAGCAACTTTACTGCATCAACCTTCAGAGGACTCGGTTGCACTGCCGGTACATCACAACAGGTGTCTGTACCGGCAGTGATTCGATCCTCTGCAGATTGGCAAGGGAAGAAGAACAGGAAAAAGAAGAACAGAAGGAACAACAAAACATGTCATGGTGTTGATGATGTGGATTTTCAGGATGTTTGGTGTGGACCTGGAACTGGATTCTTATCTGATGCTGCTGCTGATGTTTCTGTGGATTGTGTTGTTGCAAGAAAGAATGTTTCTTCAAGAGGAAAACTTGATAATGGTGAAAGGATAACACATAGAGAGCGTTCATCTTATTTTGGAAGGCGCAGTGTAAACCTAAATCAAGAAAGTTTGTCATTTTTGGAAGATAATTCTGATATTTTCACAACTCGTCGTGGATTAGAGTCTTTTGGAAATAGTGGATTTTGTCGTAATGCTTCGAATGTTTCTTCTGATGGTATTGCTGAGGTTGGTTCTTACTATTATCCTCTTTTCATTTCTTTGAATTCAGATTGTCTGCAGTCGCAATTGCTTGAGCTGGGAGAGAGAATTGGTTATGTGAAAACTGGACTTAAAGAAGATGAGATGAAAAACAACATAAGGAAAATTAAGCTTTTGATTTCAAATGATTCATCAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGTGAGTTTGCAAAATCCAAATTAA

Protein sequence

>MsG0680035346.01.T01

MPVITGHMKWRSPRNKLRHPISETDQTSQLSSLIQSTSCKSSISTLFSTFSNNTSNETTHDSNQNRTKKNNNSNFTASTFRGLGCTAGTSQQVSVPAVIRSSADWQGKKNRKKKNRRNNKTCHGVDDVDFQDVWCGPGTGFLSDAAADVSVDCVVARKNVSSRGKLDNGERITHRERSSYFGRRSVNLNQESLSFLEDNSDIFTTRRGLESFGNSGFCRNASNVSSDGIAEVGSYYYPLFISLNSDCLQSQLLELGERIGYVKTGLKEDEMKNNIRKIKLLISNDSSKHQIDKKCTICQVSLQNPN*