Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048216.01.T01 | XP_003591517.1 | 99.16 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 1.56E-79 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048216.01.T01 | Q9M9W1 | 88.793 | 116 | 13 | 0 | 4 | 119 | 9 | 124 | 1.58E-62 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048216.01.T01 | G7IF49 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 7.44e-80 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048216.01 | MsG0080048687.01 | 0.855943 | 4.491910e-62 | 1.054721e-58 |
| MsG0080048216.01 | MsG0080048971.01 | 0.824999 | 5.951826e-54 | 5.357998e-51 |
| MsG0080048216.01 | MsG0180003115.01 | 0.847962 | 8.296120e-60 | 1.499304e-56 |
| MsG0080048216.01 | MsG0180003793.01 | 0.822348 | 2.486202e-53 | 2.075700e-50 |
| MsG0080048216.01 | MsG0180004009.01 | 0.804210 | 2.409332e-49 | 1.234979e-46 |
| MsG0080048216.01 | MsG0180004129.01 | 0.811969 | 5.366256e-51 | 3.368847e-48 |
| MsG0080048216.01 | MsG0180004130.01 | 0.818644 | 1.760191e-52 | 1.325025e-49 |
| MsG0080048216.01 | MsG0280008118.01 | 0.859195 | 4.892677e-63 | 1.281408e-59 |
| MsG0080048216.01 | MsG0280009111.01 | 0.801609 | 8.303930e-49 | 3.982710e-46 |
| MsG0080048216.01 | MsG0280009375.01 | 0.829695 | 4.456974e-55 | 4.596392e-52 |
| MsG0080048216.01 | MsG0280010495.01 | 0.844630 | 6.711585e-59 | 1.090115e-55 |
| MsG0080048216.01 | MsG0280010801.01 | 0.863078 | 3.218436e-64 | 9.635670e-61 |
| MsG0080048216.01 | MsG0380012073.01 | 0.834216 | 3.408271e-56 | 4.017520e-53 |
| MsG0080048216.01 | MsG0380016733.01 | 0.809197 | 2.131540e-50 | 1.243511e-47 |
| MsG0080048216.01 | MsG0380017556.01 | 0.819979 | 8.737655e-53 | 6.826483e-50 |
| MsG0080048216.01 | MsG0480018084.01 | 0.806927 | 6.486373e-50 | 3.565079e-47 |
| MsG0080048216.01 | MsG0480018477.01 | 0.800940 | 1.138285e-48 | 5.368328e-46 |
| MsG0080048216.01 | MsG0480021832.01 | 0.808604 | 2.855008e-50 | 1.639440e-47 |
| MsG0080048216.01 | MsG0480023149.01 | 0.858256 | 9.331381e-63 | 2.367054e-59 |
| MsG0080048216.01 | MsG0480023240.01 | 0.802998 | 4.298667e-49 | 2.135869e-46 |
| MsG0080048216.01 | MsG0480023467.01 | 0.815864 | 7.428330e-52 | 5.181500e-49 |
| MsG0080048216.01 | MsG0480023559.01 | 0.835688 | 1.450707e-56 | 1.787479e-53 |
| MsG0080048216.01 | MsG0580024369.01 | 0.812154 | 4.890018e-51 | 3.085510e-48 |
| MsG0080048216.01 | MsG0580027043.01 | 0.848458 | 6.052898e-60 | 1.111592e-56 |
| MsG0080048216.01 | MsG0580029132.01 | 0.861620 | 9.028763e-64 | 2.570363e-60 |
| MsG0080048216.01 | MsG0680035848.01 | 0.815860 | 7.445167e-52 | 5.192600e-49 |
| MsG0080048216.01 | MsG0780036240.01 | 0.812332 | 4.472547e-51 | 2.835770e-48 |
| MsG0080048216.01 | MsG0780038587.01 | 0.819219 | 1.302795e-52 | 9.964264e-50 |
| MsG0080048216.01 | MsG0780039643.01 | 0.800070 | 1.712413e-48 | 7.899337e-46 |
| MsG0080048216.01 | MsG0780040338.01 | 0.836542 | 8.805343e-57 | 1.113068e-53 |
| MsG0080048216.01 | MsG0780040569.01 | 0.828863 | 7.097209e-55 | 7.141407e-52 |
| MsG0080048216.01 | MsG0780041223.01 | 0.815251 | 1.017310e-51 | 6.977511e-49 |
| MsG0080048216.01 | MsG0880043770.01 | 0.828536 | 8.513551e-55 | 8.486382e-52 |
| MsG0080048216.01 | MsG0880045656.01 | 0.812241 | 4.680942e-51 | 2.960542e-48 |
| MsG0080048216.01 | MsG0880046177.01 | 0.828176 | 1.039581e-54 | 1.025487e-51 |
| MsG0080048216.01 | MsG0880046253.01 | 0.801819 | 7.519718e-49 | 3.626017e-46 |
| MsG0080048216.01 | MsG0880046444.01 | 0.825122 | 5.569216e-54 | 5.030895e-51 |
| MsG0080048216.01 | MsG0880047388.01 | 0.804110 | 2.527578e-49 | 1.292318e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048216.01.T01 | MTR_1g088450 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 1.89e-83 | 239 |
| MsG0080048216.01.T01 | MTR_1g083430 | 89.916 | 119 | 11 | 1 | 2 | 119 | 7 | 125 | 4.25e-64 | 191 |
| MsG0080048216.01.T01 | MTR_7g112770 | 95.370 | 108 | 5 | 0 | 12 | 119 | 17 | 124 | 3.57e-62 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048216.01.T01 | AT3G05560 | 88.793 | 116 | 13 | 0 | 4 | 119 | 9 | 124 | 1.61e-63 | 189 |
| MsG0080048216.01.T01 | AT3G05560 | 88.793 | 116 | 13 | 0 | 4 | 119 | 9 | 124 | 1.61e-63 | 189 |
| MsG0080048216.01.T01 | AT3G05560 | 88.793 | 116 | 13 | 0 | 4 | 119 | 9 | 124 | 1.61e-63 | 189 |
| MsG0080048216.01.T01 | AT5G27770 | 86.735 | 98 | 13 | 0 | 11 | 108 | 16 | 113 | 1.16e-49 | 154 |
| MsG0080048216.01.T01 | AT1G02830 | 75.229 | 109 | 27 | 0 | 2 | 110 | 9 | 117 | 8.56e-46 | 144 |
Find 38 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTCAGGAGAGAATTA+AGG | 0.293634 | contig245end:+22537 | MsG0080048216.01.T01:CDS |
| ATAAACATCTACCAACTAAA+AGG | 0.310288 | contig245end:-24001 | None:intergenic |
| TTCCCTCGAGAAGTTTCTTC+AGG | 0.314117 | contig245end:+22525 | MsG0080048216.01.T01:CDS |
| GCCAGTTGAGGATAAGATTA+TGG | 0.328511 | contig245end:+22495 | MsG0080048216.01.T01:CDS |
| GGTGGTAAGGCTGGTGCTCT+TGG | 0.362800 | contig245end:+22562 | MsG0080048216.01.T01:CDS |
| GTCTTGAGCCATTCTCCATT+AGG | 0.366598 | contig245end:+23802 | MsG0080048216.01.T01:three_prime_UTR |
| ATAGATATTGCGGTCCTTGT+TGG | 0.377160 | contig245end:-23714 | None:intergenic |
| TCCACAGCAATTACACCTAA+TGG | 0.379407 | contig245end:-23817 | None:intergenic |
| GAGAATTAAGGTTGGTGGTA+AGG | 0.387795 | contig245end:+22549 | MsG0080048216.01.T01:CDS |
| AACTTGCTGAGGGAAATAAT+TGG | 0.395785 | contig245end:-23909 | None:intergenic |
| TCCATAATCTTATCCTCAAC+TGG | 0.404476 | contig245end:-22496 | None:intergenic |
| CGGAGTGAAGGGTAAGAAGA+AGG | 0.409364 | contig245end:+22444 | MsG0080048216.01.T01:CDS |
| ATCGGAGGTAACAGTGATCT+TGG | 0.422181 | contig245end:-22614 | None:intergenic |
| CGCGAAAATGAGCGGAGTGA+AGG | 0.462475 | contig245end:+22432 | MsG0080048216.01.T01:exon |
| AAAAGCACAATGTGAGGGAT+TGG | 0.474548 | contig245end:+23675 | MsG0080048216.01.T01:CDS |
| CTTCAACATTGCTGAGAATG+AGG | 0.480373 | contig245end:+23748 | MsG0080048216.01.T01:CDS |
| ATTAAGGTTGGTGGTAAGGC+TGG | 0.484881 | contig245end:+22553 | MsG0080048216.01.T01:CDS |
| CAGTTACTCAAATGCTGGCA+TGG | 0.499903 | contig245end:+23970 | MsG0080048216.01.T01:three_prime_UTR |
| CAGGAGAGAATTAAGGTTGG+TGG | 0.507782 | contig245end:+22544 | MsG0080048216.01.T01:CDS |
| GCGAAAATGAGCGGAGTGAA+GGG | 0.509201 | contig245end:+22433 | MsG0080048216.01.T01:exon |
| AGATTCAGTTACTCAAATGC+TGG | 0.531438 | contig245end:+23965 | MsG0080048216.01.T01:three_prime_UTR |
| AATAACTATAAAACTTGCTG+AGG | 0.533693 | contig245end:-23920 | None:intergenic |
| TGCTGAGAATGAGGGTGAAG+AGG | 0.536820 | contig245end:+23757 | MsG0080048216.01.T01:CDS |
| TCCATTAGGTGTAATTGCTG+TGG | 0.546419 | contig245end:+23816 | MsG0080048216.01.T01:three_prime_UTR |
| CGATTGCGCGAAGCCAGTTG+AGG | 0.561050 | contig245end:+22483 | MsG0080048216.01.T01:CDS |
| CAATTACACCTAATGGAGAA+TGG | 0.570342 | contig245end:-23810 | None:intergenic |
| GGAGTGAAGGGTAAGAAGAA+GGG | 0.572006 | contig245end:+22445 | MsG0080048216.01.T01:CDS |
| CTTCAGGAGAGAATTAAGGT+TGG | 0.582585 | contig245end:+22541 | MsG0080048216.01.T01:CDS |
| ATCTCAACTCATAGATATTG+CGG | 0.582807 | contig245end:-23724 | None:intergenic |
| AGTCTCAACGCGAAAATGAG+CGG | 0.596462 | contig245end:+22424 | MsG0080048216.01.T01:exon |
| TTTACATCACCAGGAAGAAG+GGG | 0.601482 | contig245end:+22397 | None:intergenic |
| TCGTGTTATTGCATCCAACA+AGG | 0.613064 | contig245end:+23700 | MsG0080048216.01.T01:CDS |
| TTCAACATTGCTGAGAATGA+GGG | 0.613248 | contig245end:+23749 | MsG0080048216.01.T01:CDS |
| CTCCTGAAGAAACTTCTCGA+GGG | 0.621359 | contig245end:-22527 | None:intergenic |
| ATAACTATAAAACTTGCTGA+GGG | 0.626028 | contig245end:-23919 | None:intergenic |
| TCTCCTGAAGAAACTTCTCG+AGG | 0.651285 | contig245end:-22528 | None:intergenic |
| TTACATCACCAGGAAGAAGG+GGG | 0.678294 | contig245end:+22398 | None:intergenic |
| TTTGTCACGAGTAACAGTAA+CGG | 0.687075 | contig245end:-22590 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATTTATTATGATTC+TGG | + | contig245end:23424-23443 | MsG0080048216.01.T01:intron | 10.0% |
| !!! | TCAAATTTTATTTAACATAA+AGG | - | contig245end:23402-23421 | None:intergenic | 10.0% |
| !!! | GCAAGTTTTATAGTTATTAT+TGG | + | contig245end:23925-23944 | MsG0080048216.01.T01:three_prime_UTR | 20.0% |
| ! | AAAGGAATACTAAACAATAG+TGG | - | contig245end:23384-23403 | None:intergenic | 25.0% |
| ! | ATAAACATCTACCAACTAAA+AGG | - | contig245end:24004-24023 | None:intergenic | 25.0% |
| ! | CATGTGAACATTTCATTTAA+AGG | - | contig245end:22744-22763 | None:intergenic | 25.0% |
| !! | AAAATTTTGTGTGCTTACTT+TGG | + | contig245end:23884-23903 | MsG0080048216.01.T01:three_prime_UTR | 25.0% |
| !! | GTTTCTTTTTATAACTATGC+TGG | + | contig245end:22901-22920 | MsG0080048216.01.T01:intron | 25.0% |
| !! | TTAAATTACTTGGTAGTAAC+TGG | + | contig245end:22930-22949 | MsG0080048216.01.T01:intron | 25.0% |
| !!! | AATAACTATAAAACTTGCTG+AGG | - | contig245end:23923-23942 | None:intergenic | 25.0% |
| !!! | ATAACTATAAAACTTGCTGA+GGG | - | contig245end:23922-23941 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTGAGTTACTGT+TGG | + | contig245end:22816-22835 | MsG0080048216.01.T01:intron | 25.0% |
| ATCTCAACTCATAGATATTG+CGG | - | contig245end:23727-23746 | None:intergenic | 30.0% | |
| CATGTTATTGAGTAATTCTG+TGG | + | contig245end:22760-22779 | MsG0080048216.01.T01:intron | 30.0% | |
| CTGGTAACTGTTAAATTACT+TGG | + | contig245end:22920-22939 | MsG0080048216.01.T01:intron | 30.0% | |
| CTTAATGTTACTGATGTGTT+AGG | + | contig245end:22680-22699 | MsG0080048216.01.T01:intron | 30.0% | |
| GGACAAAAATAATCACATGA+AGG | - | contig245end:23601-23620 | None:intergenic | 30.0% | |
| TCAAAATAAACTGAGACACA+AGG | - | contig245end:23547-23566 | None:intergenic | 30.0% | |
| TGAATACAAGTTGTCTTCTT+TGG | + | contig245end:23564-23583 | MsG0080048216.01.T01:intron | 30.0% | |
| TTGTCATGAGAATCTTAAGT+TGG | - | contig245end:23302-23321 | None:intergenic | 30.0% | |
| ! | TTGTTAACTTTTCTACCTTG+AGG | + | contig245end:23174-23193 | MsG0080048216.01.T01:intron | 30.0% |
| !! | CCTTTTGGAAAAATTGCTAT+CGG | - | contig245end:22635-22654 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCAACTTGTTAC+TGG | + | contig245end:23855-23874 | MsG0080048216.01.T01:three_prime_UTR | 30.0% |
| AAAAACAGTTAAACTGAGCC+AGG | - | contig245end:23475-23494 | None:intergenic | 35.0% | |
| AAATCTCGTAGAAGATCCAA+AGG | + | contig245end:23011-23030 | MsG0080048216.01.T01:intron | 35.0% | |
| AAGAAAACATCACAAGCCAA+AGG | - | contig245end:23267-23286 | None:intergenic | 35.0% | |
| AATCTCGTAGAAGATCCAAA+GGG | + | contig245end:23012-23031 | MsG0080048216.01.T01:intron | 35.0% | |
| AGATTCAGTTACTCAAATGC+TGG | + | contig245end:23965-23984 | MsG0080048216.01.T01:three_prime_UTR | 35.0% | |
| CAATTACACCTAATGGAGAA+TGG | - | contig245end:23813-23832 | None:intergenic | 35.0% | |
| GCAGTGAAATTTCAGAATCA+CGG | - | contig245end:23066-23085 | None:intergenic | 35.0% | |
| GTTTCTTCAGGAGAGAATTA+AGG | + | contig245end:22537-22556 | MsG0080048216.01.T01:CDS | 35.0% | |
| TCCATAATCTTATCCTCAAC+TGG | - | contig245end:22499-22518 | None:intergenic | 35.0% | |
| TTAGTGTATGTTCTGATGAG+TGG | + | contig245end:22977-22996 | MsG0080048216.01.T01:intron | 35.0% | |
| TTCAACATTGCTGAGAATGA+GGG | + | contig245end:23749-23768 | MsG0080048216.01.T01:CDS | 35.0% | |
| TTTGGAAAAATTGCTATCGG+AGG | - | contig245end:22632-22651 | None:intergenic | 35.0% | |
| TTTGTCACGAGTAACAGTAA+CGG | - | contig245end:22593-22612 | None:intergenic | 35.0% | |
| ! | AAGACGAAGAAGTTACCTTT+TGG | - | contig245end:22650-22669 | None:intergenic | 35.0% |
| ! | ACTTGAAAAAGCACAATGTG+AGG | + | contig245end:23669-23688 | MsG0080048216.01.T01:CDS | 35.0% |
| ! | ATGTTTTGCCAAAATTGAGG+TGG | + | contig245end:23036-23055 | MsG0080048216.01.T01:intron | 35.0% |
| ! | CCGATAGCAATTTTTCCAAA+AGG | + | contig245end:22632-22651 | MsG0080048216.01.T01:CDS | 35.0% |
| ! | CTTGAAAAAGCACAATGTGA+GGG | + | contig245end:23670-23689 | MsG0080048216.01.T01:CDS | 35.0% |
| ! | GGTATGTTTTGCCAAAATTG+AGG | + | contig245end:23033-23052 | MsG0080048216.01.T01:intron | 35.0% |
| ! | TTTTGGCAAAACATACCCTT+TGG | - | contig245end:23030-23049 | None:intergenic | 35.0% |
| !! | AACTTGCTGAGGGAAATAAT+TGG | - | contig245end:23912-23931 | None:intergenic | 35.0% |
| !! | ATTCTGTGGCTTTGAAATGT+TGG | + | contig245end:22774-22793 | MsG0080048216.01.T01:intron | 35.0% |
| !!! | GTGCTTTTTCAAGTACTTCT+TGG | - | contig245end:23663-23682 | None:intergenic | 35.0% |
| ACACACATCAGTTGCATGTT+TGG | - | contig245end:23093-23112 | None:intergenic | 40.0% | |
| ACTGAACTTGATTCTTGTCC+TGG | + | contig245end:23454-23473 | MsG0080048216.01.T01:intron | 40.0% | |
| ATAGATATTGCGGTCCTTGT+TGG | - | contig245end:23717-23736 | None:intergenic | 40.0% | |
| CATCAGTTGCATGTTTGGAT+TGG | - | contig245end:23088-23107 | None:intergenic | 40.0% | |
| CTTCAACATTGCTGAGAATG+AGG | + | contig245end:23748-23767 | MsG0080048216.01.T01:CDS | 40.0% | |
| CTTCAGGAGAGAATTAAGGT+TGG | + | contig245end:22541-22560 | MsG0080048216.01.T01:CDS | 40.0% | |
| GCCAGTTGAGGATAAGATTA+TGG | + | contig245end:22495-22514 | MsG0080048216.01.T01:CDS | 40.0% | |
| GGTCAAGTACTTCAAATACC+TGG | - | contig245end:23642-23661 | None:intergenic | 40.0% | |
| GTACTTCAAATACCTGGCAA+AGG | - | contig245end:23636-23655 | None:intergenic | 40.0% | |
| TAATCAACACTACCTTTGCC+AGG | + | contig245end:23621-23640 | MsG0080048216.01.T01:intron | 40.0% | |
| TCCACAGCAATTACACCTAA+TGG | - | contig245end:23820-23839 | None:intergenic | 40.0% | |
| TCCATTAGGTGTAATTGCTG+TGG | + | contig245end:23816-23835 | MsG0080048216.01.T01:three_prime_UTR | 40.0% | |
| ! | AAAAGCACAATGTGAGGGAT+TGG | + | contig245end:23675-23694 | MsG0080048216.01.T01:CDS | 40.0% |
| ! | TCGTGTTATTGCATCCAACA+AGG | + | contig245end:23700-23719 | MsG0080048216.01.T01:CDS | 40.0% |
| ! | TGGTTTCTGCACCTTTTAGT+TGG | + | contig245end:23990-24009 | MsG0080048216.01.T01:three_prime_UTR | 40.0% |
| !! | ACTAAACAATAGTGGACACC+AGG | - | contig245end:23376-23395 | None:intergenic | 40.0% |
| !! | GAGAATTAAGGTTGGTGGTA+AGG | + | contig245end:22549-22568 | MsG0080048216.01.T01:CDS | 40.0% |
| !! | GCACTATGCTTGTTGTGAAA+GGG | + | contig245end:23218-23237 | MsG0080048216.01.T01:intron | 40.0% |
| !! | GTGGCTTTGAAATGTTGGAT+GGG | + | contig245end:22779-22798 | MsG0080048216.01.T01:intron | 40.0% |
| !! | TGGCAAAGGTAGTGTTGATT+AGG | - | contig245end:23622-23641 | None:intergenic | 40.0% |
| !! | TGGCTTTGAAATGTTGGATG+GGG | + | contig245end:22780-22799 | MsG0080048216.01.T01:intron | 40.0% |
| !! | TGTGGCTTTGAAATGTTGGA+TGG | + | contig245end:22778-22797 | MsG0080048216.01.T01:intron | 40.0% |
| AAAATGCCATTCCCAGCCTT+TGG | + | contig245end:23248-23267 | MsG0080048216.01.T01:intron | 45.0% | |
| AAACATCACAAGCCAAAGGC+TGG | - | contig245end:23263-23282 | None:intergenic | 45.0% | |
| AACATCACAAGCCAAAGGCT+GGG | - | contig245end:23262-23281 | None:intergenic | 45.0% | |
| AGGTCTAGTTGTCGCTGTTT+GGG | + | contig245end:23194-23213 | MsG0080048216.01.T01:intron | 45.0% | |
| AGTCTCAACGCGAAAATGAG+CGG | + | contig245end:22424-22443 | MsG0080048216.01.T01:exon | 45.0% | |
| ATCGGAGGTAACAGTGATCT+TGG | - | contig245end:22617-22636 | None:intergenic | 45.0% | |
| CAGGAGAGAATTAAGGTTGG+TGG | + | contig245end:22544-22563 | MsG0080048216.01.T01:CDS | 45.0% | |
| CAGTTACTCAAATGCTGGCA+TGG | + | contig245end:23970-23989 | MsG0080048216.01.T01:three_prime_UTR | 45.0% | |
| CTCCTGAAGAAACTTCTCGA+GGG | - | contig245end:22530-22549 | None:intergenic | 45.0% | |
| GGAGTGAAGGGTAAGAAGAA+GGG | + | contig245end:22445-22464 | MsG0080048216.01.T01:CDS | 45.0% | |
| GTCTTGAGCCATTCTCCATT+AGG | + | contig245end:23802-23821 | MsG0080048216.01.T01:three_prime_UTR | 45.0% | |
| TCTCCTGAAGAAACTTCTCG+AGG | - | contig245end:22531-22550 | None:intergenic | 45.0% | |
| TTCCCTCGAGAAGTTTCTTC+AGG | + | contig245end:22525-22544 | MsG0080048216.01.T01:CDS | 45.0% | |
| ! | GTGATGTTTTCTTGCATCCG+CGG | + | contig245end:23274-23293 | MsG0080048216.01.T01:intron | 45.0% |
| !! | AGAATCTTAAGTTGGCACCG+CGG | - | contig245end:23294-23313 | None:intergenic | 45.0% |
| !! | ATTAAGGTTGGTGGTAAGGC+TGG | + | contig245end:22553-22572 | MsG0080048216.01.T01:CDS | 45.0% |
| !! | CGCACTATGCTTGTTGTGAA+AGG | + | contig245end:23217-23236 | MsG0080048216.01.T01:intron | 45.0% |
| ACAGCGACAACTAGACCTCA+AGG | - | contig245end:23192-23211 | None:intergenic | 50.0% | |
| CGGAGTGAAGGGTAAGAAGA+AGG | + | contig245end:22444-22463 | MsG0080048216.01.T01:CDS | 50.0% | |
| GAGGTCTAGTTGTCGCTGTT+TGG | + | contig245end:23193-23212 | MsG0080048216.01.T01:intron | 50.0% | |
| GCGAAAATGAGCGGAGTGAA+GGG | + | contig245end:22433-22452 | MsG0080048216.01.T01:exon | 50.0% | |
| GCTCATGTTCCTGCATTTCC+TGG | + | contig245end:23355-23374 | MsG0080048216.01.T01:intron | 50.0% | |
| TGCTGAGAATGAGGGTGAAG+AGG | + | contig245end:23757-23776 | MsG0080048216.01.T01:CDS | 50.0% | |
| ! | ACGGTGAGCCACCTCAATTT+TGG | - | contig245end:23047-23066 | None:intergenic | 50.0% |
| ! | TAGTGGACACCAGGAAATGC+AGG | - | contig245end:23367-23386 | None:intergenic | 50.0% |
| AGACTTCACCCCCTTCTTCC+TGG | - | contig245end:22409-22428 | None:intergenic | 55.0% | |
| CACAAGCCAAAGGCTGGGAA+TGG | - | contig245end:23257-23276 | None:intergenic | 55.0% | |
| CGCGAAAATGAGCGGAGTGA+AGG | + | contig245end:22432-22451 | MsG0080048216.01.T01:exon | 55.0% | |
| CGATTGCGCGAAGCCAGTTG+AGG | + | contig245end:22483-22502 | MsG0080048216.01.T01:CDS | 60.0% | |
| GGTGGTAAGGCTGGTGCTCT+TGG | + | contig245end:22562-22581 | MsG0080048216.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig245end | gene | 22402 | 24039 | 22402 | ID=MsG0080048216.01;Name=MsG0080048216.01 |
| contig245end | mRNA | 22402 | 24039 | 22402 | ID=MsG0080048216.01.T01;Parent=MsG0080048216.01;Name=MsG0080048216.01.T01;_AED=0.45;_eAED=0.45;_QI=37|1|1|1|1|1|2|252|119 |
| contig245end | exon | 23643 | 24039 | 23643 | ID=MsG0080048216.01.T01:exon:22934;Parent=MsG0080048216.01.T01 |
| contig245end | exon | 22402 | 22653 | 22402 | ID=MsG0080048216.01.T01:exon:22933;Parent=MsG0080048216.01.T01 |
| contig245end | five_prime_UTR | 22402 | 22438 | 22402 | ID=MsG0080048216.01.T01:five_prime_utr;Parent=MsG0080048216.01.T01 |
| contig245end | CDS | 22439 | 22653 | 22439 | ID=MsG0080048216.01.T01:cds;Parent=MsG0080048216.01.T01 |
| contig245end | CDS | 23643 | 23787 | 23643 | ID=MsG0080048216.01.T01:cds;Parent=MsG0080048216.01.T01 |
| contig245end | three_prime_UTR | 23788 | 24039 | 23788 | ID=MsG0080048216.01.T01:three_prime_utr;Parent=MsG0080048216.01.T01 |
| Gene Sequence |
| Protein sequence |
