AlfalfaGEDB | MsG0780036240.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036240.01

KEGG: -
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF01199 PF07891

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036240.01.T01	XP_003621182.2	90.314	733	40	6	75	777	1	732	0	1232

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036240.01.T01	P40590	96.774	93	3	0	778	870	28	120	8.61E-53	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036240.01.T01	Q2HVS4	90.314	733	40	6	75	777	1	732	0.0	1232

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0780036240.01	0.848768	4.965036e-60	9.210012e-57
MsG0080048197.01	MsG0780036240.01	0.862850	3.784745e-64	1.124478e-60
MsG0080048216.01	MsG0780036240.01	0.812332	4.472547e-51	2.835770e-48
MsG0080048383.01	MsG0780036240.01	0.853097	2.992917e-61	6.392695e-58
MsG0080048687.01	MsG0780036240.01	0.906925	8.807644e-81	1.525523e-76
MsG0080048784.01	MsG0780036240.01	0.857403	1.671559e-62	4.120560e-59
MsG0080048843.01	MsG0780036240.01	0.861820	7.841708e-64	2.247218e-60
MsG0080048856.01	MsG0780036240.01	0.832465	9.307593e-56	1.041164e-52
MsG0080048968.01	MsG0780036240.01	0.908482	1.630065e-81	3.030169e-77
MsG0080048971.01	MsG0780036240.01	0.893795	4.505367e-75	4.360333e-71

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036240.01.T01	MTR_7g010160	90.314	733	40	6	75	777	1	732	0.0	1232
MsG0780036240.01.T01	MTR_5g040600	37.184	632	320	21	194	782	302	899	4.39e-102	338
MsG0780036240.01.T01	MTR_8g467380	41.223	376	196	10	413	768	452	822	3.50e-73	257
MsG0780036240.01.T01	MTR_7g010150	98.925	93	1	0	778	870	28	120	8.66e-56	188
MsG0780036240.01.T01	MTR_8g467460	97.826	92	2	0	778	869	28	119	9.72e-55	185
MsG0780036240.01.T01	MTR_5g040570	94.624	93	5	0	778	870	28	120	1.10e-53	182
MsG0780036240.01.T01	MTR_8g467390	37.818	275	156	6	413	677	70	339	1.29e-44	165
MsG0780036240.01.T01	MTR_4g005350	35.110	319	168	13	468	776	122	411	5.19e-36	142
MsG0780036240.01.T01	MTR_7g011050	60.920	87	18	1	778	864	28	98	5.51e-26	103
MsG0780036240.01.T01	MTR_6g084440	31.657	338	188	13	458	785	291	595	1.24e-22	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036240.01.T01	AT5G39785	53.924	395	163	8	401	777	200	593	5.80e-130	403
MsG0780036240.01.T01	AT5G39785	53.924	395	163	8	401	777	200	593	5.80e-130	403
MsG0780036240.01.T01	AT5G39785	53.924	395	163	8	401	777	200	593	5.80e-130	403
MsG0780036240.01.T01	AT5G39785	53.535	396	164	9	401	777	200	594	2.16e-127	396
MsG0780036240.01.T01	AT5G39785	50.714	420	163	9	401	777	200	618	2.90e-124	389
MsG0780036240.01.T01	AT1G69610	41.470	381	192	10	409	777	218	579	1.25e-73	253
MsG0780036240.01.T01	AT1G69610	41.470	381	192	10	409	777	262	623	6.75e-73	252
MsG0780036240.01.T01	AT1G69610	41.470	381	192	10	409	777	263	624	7.54e-73	252
MsG0780036240.01.T01	AT1G26880	81.905	105	19	0	766	870	16	120	3.39e-50	172
MsG0780036240.01.T01	AT1G69620	82.692	104	18	0	766	869	16	119	7.99e-50	171

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Find 140 sgRNAs with CRISPR-Local

Find 804 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAGCAACACAAATT+GGG	0.440654	7:+5101088	None:intergenic
AACAAGTATGAGTTTATCTC+AGG	0.467675	7:-5100721	MsG0780036240.01.T01:CDS
AACTACAGATTTCGATACAT+TGG	0.456260	7:-5100344	MsG0780036240.01.T01:CDS
AACTTGAAGAAGTTTCTTCA+TGG	0.394542	7:+5098036	None:intergenic
AAGAAACTATTAATGCCACG+TGG	0.745035	7:+5098343	None:intergenic
AAGAATCCATTAGAACAATT+TGG	0.248534	7:-5097278	MsG0780036240.01.T01:CDS
AAGAGAATTATATAGTGACT+TGG	0.594503	7:-5098275	MsG0780036240.01.T01:CDS
AAGCCCTGTTAACAGTGCGG+CGG	0.691394	7:+5091741	None:intergenic
AATAGAAACCATTTCAGTAG+AGG	0.537441	7:+5091291	None:intergenic
AATAGTGAAGAGGTTGTTGG+TGG	0.673028	7:-5100562	MsG0780036240.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGGTCATAGGAAAATT+GGG	+	Chr7:5097477-5097496	None:intergenic	30.0%
AAACCCTAGAAAAATGAAAG+AGG	+	Chr7:5102668-5102687	None:intergenic	30.0%
AAAGGCCCAATAATAAATCT+AGG	-	Chr7:5102591-5102610	MsG0780036240.01.T01:intron	30.0%
AACAAGTATGAGTTTATCTC+AGG	-	Chr7:5095384-5095403	MsG0780036240.01.T01:intron	30.0%
AACAATTTGCAACAACTGTA+TGG	-	Chr7:5092669-5092688	MsG0780036240.01.T01:intron	30.0%
AACATAACTTTCCAAGAGAA+AGG	+	Chr7:5097556-5097575	None:intergenic	30.0%
AACCCTAGAAAAATGAAAGA+GGG	+	Chr7:5102667-5102686	None:intergenic	30.0%
AACCTAATAACTTATGAGTG+TGG	-	Chr7:5092702-5092721	MsG0780036240.01.T01:intron	30.0%
AACCTCATATTCAAAATGGA+TGG	+	Chr7:5093586-5093605	None:intergenic	30.0%
AACTACAGATTTCGATACAT+TGG	-	Chr7:5095761-5095780	MsG0780036240.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	5091253	5104874	5091253	ID=MsG0780036240.01;Name=MsG0780036240.01
Chr7	mRNA	5091253	5104874	5091253	ID=MsG0780036240.01.T01;Parent=MsG0780036240.01;Name=MsG0780036240.01.T01;_AED=0.48;_eAED=0.49;_QI=0\|0.62\|0.55\|1\|1\|1\|9\|269\|870
Chr7	exon	5091253	5091615	5091253	ID=MsG0780036240.01.T01:exon:2828;Parent=MsG0780036240.01.T01
Chr7	exon	5091704	5091813	5091704	ID=MsG0780036240.01.T01:exon:2827;Parent=MsG0780036240.01.T01
Chr7	exon	5093103	5093182	5093103	ID=MsG0780036240.01.T01:exon:2826;Parent=MsG0780036240.01.T01
Chr7	exon	5096162	5096372	5096162	ID=MsG0780036240.01.T01:exon:2825;Parent=MsG0780036240.01.T01
Chr7	exon	5097155	5097384	5097155	ID=MsG0780036240.01.T01:exon:2824;Parent=MsG0780036240.01.T01
Chr7	exon	5098023	5098442	5098023	ID=MsG0780036240.01.T01:exon:2823;Parent=MsG0780036240.01.T01
Chr7	exon	5099870	5101134	5099870	ID=MsG0780036240.01.T01:exon:2822;Parent=MsG0780036240.01.T01
Chr7	exon	5104059	5104114	5104059	ID=MsG0780036240.01.T01:exon:2821;Parent=MsG0780036240.01.T01
Chr7	exon	5104728	5104874	5104728	ID=MsG0780036240.01.T01:exon:2820;Parent=MsG0780036240.01.T01
Chr7	CDS	5104728	5104874	5104728	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5104059	5104114	5104059	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5099870	5101134	5099870	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5098023	5098442	5098023	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5097155	5097384	5097155	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5096162	5096372	5096162	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5093103	5093182	5093103	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5091704	5091813	5091704	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	CDS	5091522	5091615	5091522	ID=MsG0780036240.01.T01:cds;Parent=MsG0780036240.01.T01
Chr7	three_prime_UTR	5091253	5091521	5091253	ID=MsG0780036240.01.T01:three_prime_utr;Parent=MsG0780036240.01.T01

Gene Sequence

>MsG0780036240.01.T01

ATGTATTTAGATAACCAATCAACATGTGTTTCATATCGATCAATCCTTGACAATTTGATGGTCGCTATTGAGGTTGTCCCTTATAGGAAGTCTAAGACGAATGGTAATGAAGGTAATGTTGCTTTAGAGTTGGATATTACTATATTAGCTCACGGTGGAGAATTGGTTCGGGTGCTGCAATCCCAATTTCTAATGCACCTTGGATTGTATACTTCTGAAGCAATGGTCCCAATTTGTGTTGCTGAATTTTCCAACGATAATCATGAAATTGAGTCAAGTTTTTCTGAGTCAAAAATTGAGGCTGAGGAAGAAGAATTTTATGAATGTTTTGAGGAAATTTCTGATACTGTTTCACATGAAAGTAATCAAATTGAGTCTAATTGTAGCTATCTAGAAGGTGAAAAGGTGAAGTTTTGTTCTGAAAATGTTGATGATCATAGTGTGAATTTTGACCTAGAAAAAGAAGAGGAAAAATCGAAGTTGGTTTTCAAATTTCAATATCAAAATTGGAATTGCAGTTTTAGTGAGGAATTGAAGGGAAATTTGAGTGAAAGTAGTGATTTTGACAAAAAGGGTGGTGTTTCTTCTAGTGTGAACAAGTATGAGTTTATCTCAGGAAAGAGTTTTAGTAAATTCTTGGATGAACCAAAGGCTTCAAATTTTGCTGTCAAAGAGTTTTTCGTTCATCCGAATGATAATGTTCCGTTGGCGAAAAATCATGTGGCCGATGATTCAGCTGGTTTGTTATCTGAGAATAGTGAAGAGGTTGTTGGTGGCGAAGTTGTTGATGGGAAAATTGTCGATAATGTCTCAGAAAAGTTACACGAAGAGGAGGTTTTACAGAAGCTCGAGAATTCAGAACCATATGCGCGTAATTTTCTTTCTGATGATGATTTCATTTGTTCAAGCTCTGATACAGATTCTATAAGTTCTTTGGACGATGGTTTTTTGTCGGACACAGATTTTGGAACAACTACAGATTTCGATACATTGGGAAACAATGAAGAAGAAAATGTAGAAGATTTGGACTTTAAGGATGAGGAAAGCATAGAAAGTTTGGATTTTGGTTATGAGCCGGACGATTTCGGAGAAGAAGACGAAGATATAATGAATGAGCTTGGAAAATTGGAGGAAGAAATCAGACAGGAAGAATCGCTGAAACAAAAATCGAAGAGTTTAACGGCTTTTGATCTTGATGAGTCGAACCGGTTCGACACACTTTGGGAGCATCAGGATTTGATAGAACAGCTGAAGATGGAATTGAAGAAGGTTAAAGCTACTGGTTTACCTACTATCTTTGAGGATTCTGAGTCACCAAGGATTATGGAAGATTTGAAGCCATGGAAAATTGATGAAAAATTTCAGCAAGGTAGCAGTACTACAAATGAGCTTCCAAAATTCTACAGAAGTTACAGAGAAAGAATGAGAAAATTTGATATCTTGAATTACCAAAAGATGTATGCTTTAGGTCTAATGAAGTCAAAGGACCCACTAAAATCATTTTCAATTCATAAGAAATCTTCATCAACAATCACATGCATTCTTCCACGTGGCATTAATAGTTTCTTTAGACGTAATAGAAACATTGATGCTGACCCAATGAAGAAGTTCATAAGAGAATTATATAGTGACTTGGAAATGGTTTATGTGGGACATTTGTGTCTTTCTTGGGAATTCCTTCATTGGGAATATGAAAAGGCTTTGAAGATATGGGAATCTGATCAATATGGATTGAGAAGGTTCAATGAAGTAGCTGGAGAATTTCAACAATTCCAAGTTCTTCTACAAAGATTTATAGAGAATGAACCTTTTCAAGGTCCAAGGGTTGAAAATTATGCTAGGAATCGTTGTGCCATGAAGAAACTTCTTCAAGTTCCTGTTATAAAAGAAGACAAAGGCAAGGATAAAAAGTTTAGAAAAAGAGAAGTCGACAATGATGCCATCACAAGTGACATGCTAGTAGAAATATTAGAAGAATCCATTAGAACAATTTGGCGTTTCATAAGAGGTGATAAAGATGCATCAAATTTGACAATTAAATGTCTTAAAGAACATGTGGAGCTACAAGACCCTGCTGATTCACAACTTCTAGTGGAGATTCTAACGGATCTTCAAAAGAAGGAAAAGAGATTGAGAGAGGTTTTAAGGAGTGGAAGCTGCATATTGAAGAAGTTCAAAAAGCATGATGAAGATGAAATAGATCCAGTTCTTTACTTTTTCTCTCAAGTGGATTTGAAACTTGTTTGTAGAGTGTTGAATATGTCAAGGATAACGACTGATCAACTAGCATGGTGTCGTAGTAAACTAAACAAGATCAGTTTTGTAAACCGTGGAAAGTTGGTTTATCACACAACTAAGAAGAGAGCTAGTGGACCTAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCACACTTGAGACCTACTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCCGCACTGTTAACAGGGCTTATGGAGGTGTTTTATCCGGAGGAGCAGTTAGGGAAAGGATTATCCGTGCTTTCCTTGTTGAAGAGCAAAAAATAGTCAAGAAAGTTTTGAAGATCCAGAAAACAAAAGAAAAGCAAGCAGCTAAGAGTTAA

Protein sequence

>MsG0780036240.01.T01

MYLDNQSTCVSYRSILDNLMVAIEVVPYRKSKTNGNEGNVALELDITILAHGGELVRVLQSQFLMHLGLYTSEAMVPICVAEFSNDNHEIESSFSESKIEAEEEEFYECFEEISDTVSHESNQIESNCSYLEGEKVKFCSENVDDHSVNFDLEKEEEKSKLVFKFQYQNWNCSFSEELKGNLSESSDFDKKGGVSSSVNKYEFISGKSFSKFLDEPKASNFAVKEFFVHPNDNVPLAKNHVADDSAGLLSENSEEVVGGEVVDGKIVDNVSEKLHEEEVLQKLENSEPYARNFLSDDDFICSSSDTDSISSLDDGFLSDTDFGTTTDFDTLGNNEEENVEDLDFKDEESIESLDFGYEPDDFGEEDEDIMNELGKLEEEIRQEESLKQKSKSLTAFDLDESNRFDTLWEHQDLIEQLKMELKKVKATGLPTIFEDSESPRIMEDLKPWKIDEKFQQGSSTTNELPKFYRSYRERMRKFDILNYQKMYALGLMKSKDPLKSFSIHKKSSSTITCILPRGINSFFRRNRNIDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEKALKIWESDQYGLRRFNEVAGEFQQFQVLLQRFIENEPFQGPRVENYARNRCAMKKLLQVPVIKEDKGKDKKFRKREVDNDAITSDMLVEILEESIRTIWRFIRGDKDASNLTIKCLKEHVELQDPADSQLLVEILTDLQKKEKRLREVLRSGSCILKKFKKHDEDEIDPVLYFFSQVDLKLVCRVLNMSRITTDQLAWCRSKLNKISFVNRGKLVYHTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKS*