AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039643.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039643.01.T01 MTR_7g076670 84.663 163 12 2 1 163 1 150 9.45e-95 276
MsG0780039643.01.T01 MTR_7g076670 84.663 163 12 2 1 163 1 150 1.85e-94 276
MsG0780039643.01.T01 MTR_7g076670 84.663 163 12 2 1 163 1 150 2.33e-94 276
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039643.01.T01 AT2G45790 77.914 163 23 2 1 163 1 150 1.02e-85 254

Find 56 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCACTAACCTCTTAAT+AGG 0.197187 7:-67189857 None:intergenic
CAAACTCATCTCTTTCTTCT+TGG 0.206366 7:-67190002 None:intergenic
GCATATCATTCAATTAAATT+TGG 0.223092 7:+67191840 MsG0780039643.01.T01:three_prime_UTR
AAGCAATCACACCAGGTTTC+AGG 0.231242 7:-67188340 None:intergenic
GTCAGCATATTTATTGATAC+TGG 0.262850 7:+67191707 MsG0780039643.01.T01:CDS
GCAGTGTACTTCTCTCTTCC+TGG 0.280491 7:+67191666 MsG0780039643.01.T01:CDS
ATTGCTTTGTTTGATGTTGA+TGG 0.316545 7:+67188356 MsG0780039643.01.T01:CDS
CAGAGCTTGAAGACATTCAT+TGG 0.326846 7:+67189528 MsG0780039643.01.T01:intron
TTGTAACGGTTGGAGTTGTT+GGG 0.339961 7:+67189041 MsG0780039643.01.T01:CDS
ATTGTAACGGTTGGAGTTGT+TGG 0.366862 7:+67189040 MsG0780039643.01.T01:CDS
CACTGCTTGATAGTATCTTC+AGG 0.395775 7:-67191649 None:intergenic
TGGCTACAGTTTCTCCCAAT+AGG 0.406761 7:-67189982 None:intergenic
GCTTCATTACATTGCTGACT+TGG 0.410076 7:+67189829 MsG0780039643.01.T01:CDS
AGAGCTTGAAGACATTCATT+GGG 0.413591 7:+67189529 MsG0780039643.01.T01:intron
AAAGAATAGAATACCTTCCT+TGG 0.425118 7:-67188392 None:intergenic
ATCTCACTAACCTCTTAATA+GGG 0.431862 7:-67189856 None:intergenic
TGTATGAACTGCAACATCTC+TGG 0.440563 7:-67188857 None:intergenic
ATGTTGAATGTGTCACCTAT+TGG 0.447595 7:+67189967 MsG0780039643.01.T01:CDS
ACTTGGATATCCCTATTAAG+AGG 0.458360 7:+67189846 MsG0780039643.01.T01:CDS
CATAAGCAAGGACAGCTCAT+TGG 0.473469 7:+67189365 MsG0780039643.01.T01:CDS
AAAACAATAATCATAGTCAT+TGG 0.476754 7:-67189321 None:intergenic
TATGAATCTGATCGGACTAT+CGG 0.479199 7:+67191439 MsG0780039643.01.T01:CDS
CGATCAGATTCATAAATTCA+TGG 0.492116 7:-67191430 None:intergenic
ATGAATCTGATCGGACTATC+GGG 0.497720 7:+67191440 MsG0780039643.01.T01:CDS
AGCAATCACACCAGGTTTCA+GGG 0.498276 7:-67188339 None:intergenic
TGTAACGGTTGGAGTTGTTG+GGG 0.499649 7:+67189042 MsG0780039643.01.T01:CDS
TCTGAGCAACTTGGTCAGAC+AGG 0.503594 7:+67189085 MsG0780039643.01.T01:CDS
TGTTGAATGTGTCACCTATT+GGG 0.513383 7:+67189968 MsG0780039643.01.T01:CDS
ATAATGGCTGCCCTGAAACC+TGG 0.534391 7:+67188329 None:intergenic
ACTGCTTGATAGTATCTTCA+GGG 0.539223 7:-67191648 None:intergenic
CAGTGTACTTCTCTCTTCCT+GGG 0.548504 7:+67191667 MsG0780039643.01.T01:CDS
GGTACACAGATTGTAACGGT+TGG 0.549280 7:+67189031 MsG0780039643.01.T01:intron
CATTTATTGAGTTCCGTAGT+GGG 0.550324 7:+67189944 MsG0780039643.01.T01:CDS
AGCAATGATTTACAGAGGAG+CGG 0.553993 7:+67191741 MsG0780039643.01.T01:exon
GCAATGATTTACAGAGGAGC+GGG 0.561589 7:+67191742 MsG0780039643.01.T01:exon
CTTGATAGTATCTTCAGGGC+TGG 0.567801 7:-67191644 None:intergenic
CATGAATTTATGAATCTGAT+CGG 0.583001 7:+67191431 MsG0780039643.01.T01:CDS
TATCATGGTACTTCACATTG+TGG 0.588852 7:+67191805 MsG0780039643.01.T01:three_prime_UTR
ACATTTATTGAGTTCCGTAG+TGG 0.588865 7:+67189943 MsG0780039643.01.T01:CDS
AGGACAGCTCATTGGAACTC+AGG 0.590199 7:+67189373 MsG0780039643.01.T01:CDS
CATTGGGGATGAACAGCTCA+AGG 0.593332 7:+67189545 MsG0780039643.01.T01:CDS
GTAAAGATATCTGAGCAACT+TGG 0.594397 7:+67189076 MsG0780039643.01.T01:CDS
TATTGATACTGGAAACAACA+TGG 0.601593 7:+67191718 MsG0780039643.01.T01:CDS
TTTGGGTACACAGATTGTAA+CGG 0.605387 7:+67189027 MsG0780039643.01.T01:intron
ATGGAACTCTTACAGCTCCA+AGG 0.610758 7:+67188375 MsG0780039643.01.T01:CDS
GGTCTTGTGGCTCATAAGCA+AGG 0.614182 7:+67189353 MsG0780039643.01.T01:CDS
GTAACGGTTGGAGTTGTTGG+GGG 0.614289 7:+67189043 MsG0780039643.01.T01:CDS
AACTCTTACAGCTCCAAGGA+AGG 0.622019 7:+67188379 MsG0780039643.01.T01:CDS
TATAATTATATCGAATCATG+TGG 0.629842 7:-67191765 None:intergenic
GAGCTTGAAGACATTCATTG+GGG 0.646459 7:+67189530 MsG0780039643.01.T01:intron
GATCGGACTATCGGGCACAC+AGG 0.652693 7:+67191448 MsG0780039643.01.T01:CDS
GTTCATACAAGATCTACGAA+AGG 0.660966 7:+67188871 MsG0780039643.01.T01:CDS
ACACATTCAACATCCCACTA+CGG 0.661979 7:-67189957 None:intergenic
TCAAACAAAGCAATCACACC+AGG 0.663993 7:-67188347 None:intergenic
TGAGTTTGAGAAGTATGACA+AGG 0.670641 7:+67190017 MsG0780039643.01.T01:CDS
CATGGAGCAATGATTTACAG+AGG 0.714801 7:+67191736 MsG0780039643.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATAATTAACAACATAA+TGG + Chr7:67190664-67190683 MsG0780039643.01.T01:intron 15.0%
!! AACAGTTGTTAAATAATTAA+TGG + Chr7:67188597-67188616 MsG0780039643.01.T01:intron 15.0%
!! AATGAAAAAGATAAAAGTTT+AGG - Chr7:67191387-67191406 None:intergenic 15.0%
!!! TTTTCTTTTTTTTCTTTTTC+CGG - Chr7:67191311-67191330 None:intergenic 15.0%
!! AAAACAATAATCATAGTCAT+TGG - Chr7:67189324-67189343 None:intergenic 20.0%
!! ATCTAATTATAATTCCATGA+TGG - Chr7:67191233-67191252 None:intergenic 20.0%
!! GAATAGGAAAAGAAATATAT+AGG - Chr7:67189577-67189596 None:intergenic 20.0%
!! GCATATCATTCAATTAAATT+TGG + Chr7:67191840-67191859 MsG0780039643.01.T01:three_prime_UTR 20.0%
!! TAAATAATTAATGGTTATGC+TGG + Chr7:67188606-67188625 MsG0780039643.01.T01:intron 20.0%
!! TAATTACCTAAATCAATCAA+TGG + Chr7:67190578-67190597 MsG0780039643.01.T01:intron 20.0%
!! TAGTACTTCACAATAAATTA+TGG - Chr7:67190423-67190442 None:intergenic 20.0%
!! TATAATTATATCGAATCATG+TGG - Chr7:67191768-67191787 None:intergenic 20.0%
!! TGAAAAACGATCAATATTAA+CGG - Chr7:67191620-67191639 None:intergenic 20.0%
!! TTGTGTAACAAGAATTTATT+TGG + Chr7:67190545-67190564 MsG0780039643.01.T01:intron 20.0%
!!! AAAATCGATTTTTTCACAAA+GGG - Chr7:67189174-67189193 None:intergenic 20.0%
!!! AATAACATAATGTATTTTGC+AGG + Chr7:67189790-67189809 MsG0780039643.01.T01:intron 20.0%
!!! ATTTCTTATTTCTGATTGTT+TGG + Chr7:67188783-67188802 MsG0780039643.01.T01:intron 20.0%
!!! TTATTTTTTGGTTAAGTGAT+AGG + Chr7:67190270-67190289 MsG0780039643.01.T01:intron 20.0%
!!! TTCTGATTGTAATTTTATCA+TGG + Chr7:67191790-67191809 MsG0780039643.01.T01:three_prime_UTR 20.0%
!!! TTTAAGAACTTTCAATTTTG+TGG + Chr7:67191111-67191130 MsG0780039643.01.T01:intron 20.0%
! AAAAAATGTAACACTGAGAA+AGG - Chr7:67191025-67191044 None:intergenic 25.0%
! AAACTTTAGTCAGTTTATGA+TGG + Chr7:67190703-67190722 MsG0780039643.01.T01:intron 25.0%
! AACAAAAAAGAGCAAAGAAT+AGG - Chr7:67188975-67188994 None:intergenic 25.0%
! ACACAAAAAGTTAACGAATA+GGG - Chr7:67189476-67189495 None:intergenic 25.0%
! ACTAAAAACCAAATAAATGC+TGG + Chr7:67191566-67191585 MsG0780039643.01.T01:intron 25.0%
! ATATCTCTATACAATGCTTA+GGG - Chr7:67191341-67191360 None:intergenic 25.0%
! CATGAATTTATGAATCTGAT+CGG + Chr7:67191431-67191450 MsG0780039643.01.T01:CDS 25.0%
! CATTATAAAGCTTAGAAGAT+AGG + Chr7:67189688-67189707 MsG0780039643.01.T01:intron 25.0%
! CTAAGTAGAAAGAAAATATG+TGG - Chr7:67191181-67191200 None:intergenic 25.0%
! GAACAGAATAAGATAATTTC+CGG - Chr7:67190492-67190511 None:intergenic 25.0%
! TACACAAAAAGTTAACGAAT+AGG - Chr7:67189477-67189496 None:intergenic 25.0%
! TATATCTCTATACAATGCTT+AGG - Chr7:67191342-67191361 None:intergenic 25.0%
! TATTCAATTACAGATTGAGT+TGG - Chr7:67189406-67189425 None:intergenic 25.0%
! TGATTATATATGTACTCTAC+AGG + Chr7:67190304-67190323 MsG0780039643.01.T01:intron 25.0%
!! AATGCAAAAATCTAAAATGG+TGG - Chr7:67191073-67191092 None:intergenic 25.0%
!! ACCATTTTAGATTTTTGCAT+TGG + Chr7:67191072-67191091 MsG0780039643.01.T01:intron 25.0%
!! ATGCAAAAATCTAAAATGGT+GGG - Chr7:67191072-67191091 None:intergenic 25.0%
!! ATTTTACAATAAGTGAACTG+AGG - Chr7:67188726-67188745 None:intergenic 25.0%
!! ATTTTCTTTCTACTTAGTTG+TGG + Chr7:67191184-67191203 MsG0780039643.01.T01:intron 25.0%
!! CCATTTTAGATTTTTGCATT+GGG + Chr7:67191073-67191092 MsG0780039643.01.T01:intron 25.0%
!! TAAGCATTGTATAGAGATAT+AGG + Chr7:67191341-67191360 MsG0780039643.01.T01:intron 25.0%
!! TATTTCTGATTGTTTGGATT+TGG + Chr7:67188789-67188808 MsG0780039643.01.T01:intron 25.0%
!! TCATAAACTGACTAAAGTTT+TGG - Chr7:67190703-67190722 None:intergenic 25.0%
!!! AAATAAATGCTGGTTCAAAA+CGG + Chr7:67191576-67191595 MsG0780039643.01.T01:intron 25.0%
!!! CAAAATCGATTTTTTCACAA+AGG - Chr7:67189175-67189194 None:intergenic 25.0%
!!! CTTTGTGAAAAAATCGATTT+TGG + Chr7:67189173-67189192 MsG0780039643.01.T01:intron 25.0%
!!! GATACGGTGAATTTATTTTT+TGG + Chr7:67190258-67190277 MsG0780039643.01.T01:intron 25.0%
!!! GATTATTGTTTTTCTGAGAA+TGG + Chr7:67189332-67189351 MsG0780039643.01.T01:CDS 25.0%
AAAATCATGCATATGAATCG+AGG + Chr7:67190515-67190534 MsG0780039643.01.T01:intron 30.0%
AAAGAATAGAATACCTTCCT+TGG - Chr7:67188395-67188414 None:intergenic 30.0%
AACGATCAATATTAACGGTA+AGG - Chr7:67191615-67191634 None:intergenic 30.0%
AATCTACTTGAATACATCGT+TGG - Chr7:67189444-67189463 None:intergenic 30.0%
AATCTCACTAACCTCTTAAT+AGG - Chr7:67189860-67189879 None:intergenic 30.0%
AGAATAGGTTTATGCATGAT+TGG - Chr7:67188960-67188979 None:intergenic 30.0%
AGATGTGTAATGTCTTGAAT+AGG - Chr7:67189593-67189612 None:intergenic 30.0%
ATCTCACTAACCTCTTAATA+GGG - Chr7:67189859-67189878 None:intergenic 30.0%
CACAAAAAGTTAACGAATAG+GGG - Chr7:67189475-67189494 None:intergenic 30.0%
CATATATAATCAAGACCTGT+TGG - Chr7:67190296-67190315 None:intergenic 30.0%
CCCAATGCAAAAATCTAAAA+TGG - Chr7:67191076-67191095 None:intergenic 30.0%
CCTAAATCAATCAATGGTTA+TGG + Chr7:67190584-67190603 MsG0780039643.01.T01:intron 30.0%
CGATCAGATTCATAAATTCA+TGG - Chr7:67191433-67191452 None:intergenic 30.0%
CTGAACAAAACTAAACAATG+TGG + Chr7:67188760-67188779 MsG0780039643.01.T01:intron 30.0%
GTCAGCATATTTATTGATAC+TGG + Chr7:67191707-67191726 MsG0780039643.01.T01:CDS 30.0%
TATCATCATATGTACTTGTG+TGG + Chr7:67191488-67191507 MsG0780039643.01.T01:intron 30.0%
TATTGATACTGGAAACAACA+TGG + Chr7:67191718-67191737 MsG0780039643.01.T01:CDS 30.0%
TATTTATAGTATGCCTAGCA+TGG - Chr7:67189632-67189651 None:intergenic 30.0%
TGAAGCATAATAAACCAAAG+TGG - Chr7:67189124-67189143 None:intergenic 30.0%
TGTTGAATCTTGCATTGTTT+GGG + Chr7:67189010-67189029 MsG0780039643.01.T01:intron 30.0%
TTAGAAGATAGGTGAATGAA+GGG + Chr7:67189699-67189718 MsG0780039643.01.T01:intron 30.0%
TTCACCATGTAACTGAAATT+CGG - Chr7:67191520-67191539 None:intergenic 30.0%
! CATTTTCACTTTATCCATCA+TGG + Chr7:67191216-67191235 MsG0780039643.01.T01:intron 30.0%
! CCATAACCATTGATTGATTT+AGG - Chr7:67190587-67190606 None:intergenic 30.0%
! GACTCATATTGCAAATTTTC+AGG - Chr7:67190117-67190136 None:intergenic 30.0%
! TCTAACTTGACATTTTCCAT+TGG + Chr7:67190195-67190214 MsG0780039643.01.T01:intron 30.0%
! TGCAAAAATCTAAAATGGTG+GGG - Chr7:67191071-67191090 None:intergenic 30.0%
! TTTTTCATTTTCACTGAGCA+GGG + Chr7:67191398-67191417 MsG0780039643.01.T01:intron 30.0%
!! ATTGCTTTGTTTGATGTTGA+TGG + Chr7:67188356-67188375 MsG0780039643.01.T01:CDS 30.0%
!! CTGTTTTATGATGATGTCAA+AGG + Chr7:67191276-67191295 MsG0780039643.01.T01:intron 30.0%
!! GTTTCAATGAATCCACTTTT+TGG + Chr7:67190375-67190394 MsG0780039643.01.T01:intron 30.0%
!! GTTTTGAACCAGCATTTATT+TGG - Chr7:67191577-67191596 None:intergenic 30.0%
!! TAAACTGACTAAAGTTTTGG+AGG - Chr7:67190700-67190719 None:intergenic 30.0%
!! TAAGTTTTGTCACCAAAAAG+TGG - Chr7:67190390-67190409 None:intergenic 30.0%
!! TTTTGGTGACAAAACTTACA+AGG + Chr7:67190392-67190411 MsG0780039643.01.T01:intron 30.0%
AAATGGGAATTGCGCAAAAA+TGG - Chr7:67190793-67190812 None:intergenic 35.0%
AACAACAATGTTGCCTATTG+CGG - Chr7:67188685-67188704 None:intergenic 35.0%
AAGTAATTCACAACTCATCG+TGG - Chr7:67189505-67189524 None:intergenic 35.0%
AATTTGCAATATGAGTCCTC+AGG + Chr7:67190120-67190139 MsG0780039643.01.T01:intron 35.0%
ACAATTCTCTTGCAAAGTGA+AGG - Chr7:67190730-67190749 None:intergenic 35.0%
ACATTTATTGAGTTCCGTAG+TGG + Chr7:67189943-67189962 MsG0780039643.01.T01:CDS 35.0%
ACTCTCATGAATCAGAAGTA+TGG + Chr7:67190922-67190941 MsG0780039643.01.T01:intron 35.0%
ACTTGGATATCCCTATTAAG+AGG + Chr7:67189846-67189865 MsG0780039643.01.T01:CDS 35.0%
AGAGCTTGAAGACATTCATT+GGG + Chr7:67189529-67189548 MsG0780039643.01.T01:intron 35.0%
ATAATGACACTCCATCAGTA+GGG + Chr7:67188420-67188439 MsG0780039643.01.T01:intron 35.0%
ATAGGTTTATGCATGATTGG+AGG - Chr7:67188957-67188976 None:intergenic 35.0%
ATGACCGAATTTCAGTTACA+TGG + Chr7:67191513-67191532 MsG0780039643.01.T01:intron 35.0%
ATGTCAAAGGAAATTGCAAC+CGG + Chr7:67191289-67191308 MsG0780039643.01.T01:intron 35.0%
ATGTTGAATGTGTCACCTAT+TGG + Chr7:67189967-67189986 MsG0780039643.01.T01:CDS 35.0%
CAAACTCATCTCTTTCTTCT+TGG - Chr7:67190005-67190024 None:intergenic 35.0%
CAAGAAAATAACCCTACTGA+TGG - Chr7:67188434-67188453 None:intergenic 35.0%
CATTTATTGAGTTCCGTAGT+GGG + Chr7:67189944-67189963 MsG0780039643.01.T01:CDS 35.0%
CTGTTGAATCTTGCATTGTT+TGG + Chr7:67189009-67189028 MsG0780039643.01.T01:intron 35.0%
CTTAGAAGATAGGTGAATGA+AGG + Chr7:67189698-67189717 MsG0780039643.01.T01:intron 35.0%
CTTATTGAAGCCAATTTCCA+TGG - Chr7:67190981-67191000 None:intergenic 35.0%
GAGCAAAGAAGAAGAAAGTA+GGG - Chr7:67189221-67189240 None:intergenic 35.0%
GCTCATCCATTAAAAACTAC+TGG + Chr7:67189237-67189256 MsG0780039643.01.T01:intron 35.0%
GTAAAGATATCTGAGCAACT+TGG + Chr7:67189076-67189095 MsG0780039643.01.T01:CDS 35.0%
GTAACTGCAACAAGCAAATA+GGG - Chr7:67189302-67189321 None:intergenic 35.0%
GTTAGCTATAAGTTCCACTT+TGG + Chr7:67189107-67189126 MsG0780039643.01.T01:intron 35.0%
GTTCATACAAGATCTACGAA+AGG + Chr7:67188871-67188890 MsG0780039643.01.T01:CDS 35.0%
TATCATGGTACTTCACATTG+TGG + Chr7:67191805-67191824 MsG0780039643.01.T01:three_prime_UTR 35.0%
TATGAATCTGATCGGACTAT+CGG + Chr7:67191439-67191458 MsG0780039643.01.T01:CDS 35.0%
TATTAACGGTAAGGTTCACA+TGG - Chr7:67191606-67191625 None:intergenic 35.0%
TCACGATCTTCATAGTGATA+CGG + Chr7:67190242-67190261 MsG0780039643.01.T01:intron 35.0%
TCAGAACATACGCTCAAAAA+TGG + Chr7:67190144-67190163 MsG0780039643.01.T01:intron 35.0%
TGAGCAAAGAAGAAGAAAGT+AGG - Chr7:67189222-67189241 None:intergenic 35.0%
TGCAAAAATCTTAATGTCCC+AGG - Chr7:67191687-67191706 None:intergenic 35.0%
TGGATTCATTGAAACCATCA+AGG - Chr7:67190370-67190389 None:intergenic 35.0%
TGTTGAATGTGTCACCTATT+GGG + Chr7:67189968-67189987 MsG0780039643.01.T01:CDS 35.0%
TTTGGGTACACAGATTGTAA+CGG + Chr7:67189027-67189046 MsG0780039643.01.T01:intron 35.0%
! AACTTGACATTTTCCATTGG+AGG + Chr7:67190198-67190217 MsG0780039643.01.T01:intron 35.0%
! ACTGCTTGATAGTATCTTCA+GGG - Chr7:67191651-67191670 None:intergenic 35.0%
! ATGTTTTATCCCAACCTTGA+GGG - Chr7:67190334-67190353 None:intergenic 35.0%
! CTGAGACCAGTAGTTTTTAA+TGG - Chr7:67189246-67189265 None:intergenic 35.0%
! TATGTTTTATCCCAACCTTG+AGG - Chr7:67190335-67190354 None:intergenic 35.0%
! TGAGTTTGAGAAGTATGACA+AGG + Chr7:67190017-67190036 MsG0780039643.01.T01:CDS 35.0%
!! CTTCAGTGTTTTGAACATGT+AGG + Chr7:67189139-67189158 MsG0780039643.01.T01:intron 35.0%
!! CTTTTTCATTTTCACTGAGC+AGG + Chr7:67191397-67191416 MsG0780039643.01.T01:intron 35.0%
!! TCAATTACAGATTGAGTTGG+TGG - Chr7:67189403-67189422 None:intergenic 35.0%
!! TTTTTCTGAGAATGGTCTTG+TGG + Chr7:67189340-67189359 MsG0780039643.01.T01:CDS 35.0%
!!! TTGTTTAGTTTTGTTCAGCG+AGG - Chr7:67188758-67188777 None:intergenic 35.0%
AAAGCTTATCTGTCCTCCAA+TGG - Chr7:67190214-67190233 None:intergenic 40.0%
ACACATTCAACATCCCACTA+CGG - Chr7:67189960-67189979 None:intergenic 40.0%
AGCAATGATTTACAGAGGAG+CGG + Chr7:67191741-67191760 MsG0780039643.01.T01:exon 40.0%
ATGAATCTGATCGGACTATC+GGG + Chr7:67191440-67191459 MsG0780039643.01.T01:CDS 40.0%
ATTGTAACGGTTGGAGTTGT+TGG + Chr7:67189040-67189059 MsG0780039643.01.T01:CDS 40.0%
CAATTTCCATGGCATTGCTA+TGG - Chr7:67190970-67190989 None:intergenic 40.0%
CAGAGCTTGAAGACATTCAT+TGG + Chr7:67189528-67189547 MsG0780039643.01.T01:intron 40.0%
CATAGCAATGCCATGGAAAT+TGG + Chr7:67190968-67190987 MsG0780039643.01.T01:intron 40.0%
CATGGAGCAATGATTTACAG+AGG + Chr7:67191736-67191755 MsG0780039643.01.T01:exon 40.0%
CGAGTCTCTTCTTGAATGAA+GGG - Chr7:67190644-67190663 None:intergenic 40.0%
CTTGAATACATCGTTGGTCA+CGG - Chr7:67189438-67189457 None:intergenic 40.0%
GAGCTTGAAGACATTCATTG+GGG + Chr7:67189530-67189549 MsG0780039643.01.T01:intron 40.0%
GATAATGACACTCCATCAGT+AGG + Chr7:67188419-67188438 MsG0780039643.01.T01:intron 40.0%
GGTAACTGCAACAAGCAAAT+AGG - Chr7:67189303-67189322 None:intergenic 40.0%
TACTGCTTGAGATACCTTGA+TGG + Chr7:67190353-67190372 MsG0780039643.01.T01:intron 40.0%
TCAAACAAAGCAATCACACC+AGG - Chr7:67188350-67188369 None:intergenic 40.0%
TCGAGTCTCTTCTTGAATGA+AGG - Chr7:67190645-67190664 None:intergenic 40.0%
TGCGCAAAAATGGATGCTTA+TGG - Chr7:67190783-67190802 None:intergenic 40.0%
TGTATGAACTGCAACATCTC+TGG - Chr7:67188860-67188879 None:intergenic 40.0%
TGTTGCCTACTCAATTGCTA+GGG + Chr7:67188827-67188846 MsG0780039643.01.T01:intron 40.0%
TTGTAACGGTTGGAGTTGTT+GGG + Chr7:67189041-67189060 MsG0780039643.01.T01:CDS 40.0%
! AAAATCTAAAATGGTGGGGC+AGG - Chr7:67191067-67191086 None:intergenic 40.0%
! AATTTGTTCCTCGGCGATTA+GGG - Chr7:67190817-67190836 None:intergenic 40.0%
! AGAAGTATGGTCTCATGTTG+CGG + Chr7:67190935-67190954 MsG0780039643.01.T01:intron 40.0%
! CACTGCTTGATAGTATCTTC+AGG - Chr7:67191652-67191671 None:intergenic 40.0%
! GCTTCATTACATTGCTGACT+TGG + Chr7:67189829-67189848 MsG0780039643.01.T01:CDS 40.0%
AACAAATTGAAGGCCAGCCA+TGG + Chr7:67190829-67190848 MsG0780039643.01.T01:intron 45.0%
AACTAGGTCCATAGGTCTTG+GGG - Chr7:67190880-67190899 None:intergenic 45.0%
AACTCTTACAGCTCCAAGGA+AGG + Chr7:67188379-67188398 MsG0780039643.01.T01:CDS 45.0%
AAGCAATCACACCAGGTTTC+AGG - Chr7:67188343-67188362 None:intergenic 45.0%
AGAACTAGGTCCATAGGTCT+TGG - Chr7:67190882-67190901 None:intergenic 45.0%
AGCAATCACACCAGGTTTCA+GGG - Chr7:67188342-67188361 None:intergenic 45.0%
ATCGCCGAGGAACAAATTGA+AGG + Chr7:67190819-67190838 MsG0780039643.01.T01:intron 45.0%
ATGGAACTCTTACAGCTCCA+AGG + Chr7:67188375-67188394 MsG0780039643.01.T01:CDS 45.0%
CAGTGTACTTCTCTCTTCCT+GGG + Chr7:67191667-67191686 MsG0780039643.01.T01:CDS 45.0%
CATAAGCAAGGACAGCTCAT+TGG + Chr7:67189365-67189384 MsG0780039643.01.T01:CDS 45.0%
CTGTTGCCTACTCAATTGCT+AGG + Chr7:67188826-67188845 MsG0780039643.01.T01:intron 45.0%
GAACTAGGTCCATAGGTCTT+GGG - Chr7:67190881-67190900 None:intergenic 45.0%
GAAGTATGGTCTCATGTTGC+GGG + Chr7:67190936-67190955 MsG0780039643.01.T01:intron 45.0%
GCAATGATTTACAGAGGAGC+GGG + Chr7:67191742-67191761 MsG0780039643.01.T01:exon 45.0%
GGATGAACAGCTCAAGGTAA+AGG + Chr7:67189551-67189570 MsG0780039643.01.T01:intron 45.0%
GGTACACAGATTGTAACGGT+TGG + Chr7:67189031-67189050 MsG0780039643.01.T01:intron 45.0%
GTTGCCTACTCAATTGCTAG+GGG + Chr7:67188828-67188847 MsG0780039643.01.T01:intron 45.0%
TGCAACAAGCAAATAGGGAC+AGG - Chr7:67189297-67189316 None:intergenic 45.0%
TGGCTACAGTTTCTCCCAAT+AGG - Chr7:67189985-67190004 None:intergenic 45.0%
TGGTTAAGTGATAGGCCAAC+AGG + Chr7:67190278-67190297 MsG0780039643.01.T01:intron 45.0%
TGTAACGGTTGGAGTTGTTG+GGG + Chr7:67189042-67189061 MsG0780039643.01.T01:CDS 45.0%
TTCTCACACCTTTCGTGTGT+GGG + Chr7:67190898-67190917 MsG0780039643.01.T01:intron 45.0%
TTGCCTACTCAATTGCTAGG+GGG + Chr7:67188829-67188848 MsG0780039643.01.T01:intron 45.0%
TTGCGGATCGTGGAAAACAA+CGG - Chr7:67188668-67188687 None:intergenic 45.0%
! ACACGAAAGGTGTGAGAACT+AGG - Chr7:67190896-67190915 None:intergenic 45.0%
! ACAGGTTTTCCCTCAAGGTT+GGG + Chr7:67190322-67190341 MsG0780039643.01.T01:intron 45.0%
! ACTCTACAGGTTTTCCCTCA+AGG + Chr7:67190317-67190336 MsG0780039643.01.T01:intron 45.0%
! CAAGATCTACGAAAGGTGTG+TGG + Chr7:67188878-67188897 MsG0780039643.01.T01:intron 45.0%
! CAATTTGTTCCTCGGCGATT+AGG - Chr7:67190818-67190837 None:intergenic 45.0%
! CTGGCCTTCAATTTGTTCCT+CGG - Chr7:67190826-67190845 None:intergenic 45.0%
! CTTGATAGTATCTTCAGGGC+TGG - Chr7:67191647-67191666 None:intergenic 45.0%
! TACAGGTTTTCCCTCAAGGT+TGG + Chr7:67190321-67190340 MsG0780039643.01.T01:intron 45.0%
! TCTACGAAAGGTGTGTGGTT+TGG + Chr7:67188883-67188902 MsG0780039643.01.T01:intron 45.0%
! TGTTTTCCACGATCCGCAAT+AGG + Chr7:67188669-67188688 MsG0780039643.01.T01:intron 45.0%
! TTCATTTTCACTGAGCAGGG+TGG + Chr7:67191401-67191420 MsG0780039643.01.T01:intron 45.0%
!!! TTTTCTGAGACTGCCATGCT+AGG + Chr7:67189616-67189635 MsG0780039643.01.T01:intron 45.0%
!! AATCTATATAAAAAAATTTA+GGG + Chr7:67189919-67189938 MsG0780039643.01.T01:intron 5.0%
!! TAATCTATATAAAAAAATTT+AGG + Chr7:67189918-67189937 MsG0780039643.01.T01:intron 5.0%
!!! TAAATTTTTTTATATAGATT+AGG - Chr7:67189919-67189938 None:intergenic 5.0%
AATTCTCGCCCCAAGACCTA+TGG + Chr7:67190869-67190888 MsG0780039643.01.T01:intron 50.0%
AGGACAGCTCATTGGAACTC+AGG + Chr7:67189373-67189392 MsG0780039643.01.T01:CDS 50.0%
ATGTTGCCTATTGCGGATCG+TGG - Chr7:67188678-67188697 None:intergenic 50.0%
CATTGGGGATGAACAGCTCA+AGG + Chr7:67189545-67189564 MsG0780039643.01.T01:CDS 50.0%
CCATGGTCACTCCAAATGTG+TGG + Chr7:67190846-67190865 MsG0780039643.01.T01:intron 50.0%
CCTCGGCGATTAGGGAAAAT+GGG - Chr7:67190809-67190828 None:intergenic 50.0%
GAATACATCGTTGGTCACGG+TGG - Chr7:67189435-67189454 None:intergenic 50.0%
GCAGTGTACTTCTCTCTTCC+TGG + Chr7:67191666-67191685 MsG0780039643.01.T01:CDS 50.0%
GCCTCTGTGCATTCATATGC+CGG + Chr7:67190470-67190489 MsG0780039643.01.T01:intron 50.0%
GGGCGAGAATTCCACACATT+TGG - Chr7:67190860-67190879 None:intergenic 50.0%
GGTGTGAGAACTAGGTCCAT+AGG - Chr7:67190888-67190907 None:intergenic 50.0%
GTAACGGTTGGAGTTGTTGG+GGG + Chr7:67189043-67189062 MsG0780039643.01.T01:CDS 50.0%
GTTCTCACACCTTTCGTGTG+TGG + Chr7:67190897-67190916 MsG0780039643.01.T01:intron 50.0%
TAGCCCCCTAGCAATTGAGT+AGG - Chr7:67188835-67188854 None:intergenic 50.0%
TCCGGCATATGAATGCACAG+AGG - Chr7:67190474-67190493 None:intergenic 50.0%
TCCTCGGCGATTAGGGAAAA+TGG - Chr7:67190810-67190829 None:intergenic 50.0%
TCTGAGCAACTTGGTCAGAC+AGG + Chr7:67189085-67189104 MsG0780039643.01.T01:CDS 50.0%
TGAGAGTTCCCACACACGAA+AGG - Chr7:67190909-67190928 None:intergenic 50.0%
! ACATTTGGAGTGACCATGGC+TGG - Chr7:67190845-67190864 None:intergenic 50.0%
! ATCTAAAATGGTGGGGCAGG+TGG - Chr7:67191064-67191083 None:intergenic 50.0%
! CCACACATTTGGAGTGACCA+TGG - Chr7:67190849-67190868 None:intergenic 50.0%
! GAGCGTATGTTCTGAACCTG+AGG - Chr7:67190139-67190158 None:intergenic 50.0%
! GGTCTTGTGGCTCATAAGCA+AGG + Chr7:67189353-67189372 MsG0780039643.01.T01:CDS 50.0%
ATGGTCTCATGTTGCGGGCA+CGG + Chr7:67190941-67190960 MsG0780039643.01.T01:intron 55.0%
CGGCTTCCATAGCAATGCCA+TGG + Chr7:67190961-67190980 MsG0780039643.01.T01:intron 55.0%
! CCCATTTTCCCTAATCGCCG+AGG + Chr7:67190806-67190825 MsG0780039643.01.T01:intron 55.0%
GATCGGACTATCGGGCACAC+AGG + Chr7:67191448-67191467 MsG0780039643.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 67188332 67191866 67188332 ID=MsG0780039643.01;Name=MsG0780039643.01
Chr7 mRNA 67188332 67191866 67188332 ID=MsG0780039643.01.T01;Parent=MsG0780039643.01;Name=MsG0780039643.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0.62|0.66|1|0.25|0.44|9|118|216
Chr7 exon 67188332 67188436 67188332 ID=MsG0780039643.01.T01:exon:13567;Parent=MsG0780039643.01.T01
Chr7 exon 67188848 67188892 67188848 ID=MsG0780039643.01.T01:exon:13568;Parent=MsG0780039643.01.T01
Chr7 exon 67189040 67189106 67189040 ID=MsG0780039643.01.T01:exon:13569;Parent=MsG0780039643.01.T01
Chr7 exon 67189318 67189394 67189318 ID=MsG0780039643.01.T01:exon:13570;Parent=MsG0780039643.01.T01
Chr7 exon 67189531 67189566 67189531 ID=MsG0780039643.01.T01:exon:13571;Parent=MsG0780039643.01.T01
Chr7 exon 67189812 67189871 67189812 ID=MsG0780039643.01.T01:exon:13572;Parent=MsG0780039643.01.T01
Chr7 exon 67189940 67190038 67189940 ID=MsG0780039643.01.T01:exon:13573;Parent=MsG0780039643.01.T01
Chr7 exon 67191416 67191469 67191416 ID=MsG0780039643.01.T01:exon:13574;Parent=MsG0780039643.01.T01
Chr7 exon 67191641 67191866 67191641 ID=MsG0780039643.01.T01:exon:13575;Parent=MsG0780039643.01.T01
Chr7 CDS 67188332 67188436 67188332 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67188848 67188892 67188848 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67189040 67189106 67189040 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67189318 67189394 67189318 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67189531 67189566 67189531 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67189812 67189871 67189812 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67189940 67190038 67189940 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67191416 67191469 67191416 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 CDS 67191641 67191748 67191641 ID=MsG0780039643.01.T01:cds;Parent=MsG0780039643.01.T01
Chr7 three_prime_UTR 67191749 67191866 67191749 ID=MsG0780039643.01.T01:three_prime_utr;Parent=MsG0780039643.01.T01
Gene Sequence

>MsG0780039643.01.T01

ATGGCTGCCCTGAAACCTGGTGTGATTGCTTTGTTTGATGTTGATGGAACTCTTACAGCTCCAAGGAAGGTATTCTATTCTTTTACAGATAATGACACTCCATCAGGGGCTACTCCAGAGATGTTGCAGTTCATACAAGATCTACGAAAGATTGTAACGGTTGGAGTTGTTGGGGGTTCTGATCTTGTAAAGATATCTGAGCAACTTGGTCAGACAGTTACCAATGACTATGATTATTGTTTTTCTGAGAATGGTCTTGTGGCTCATAAGCAAGGACAGCTCATTGGAACTCAGAGCTTGAAGACATTCATTGGGGATGAACAGCTCAAGGAATTTATTAATTTTACGCTTCATTACATTGCTGACTTGGATATCCCTATTAAGAGGTTAGGAACATTTATTGAGTTCCGTAGTGGGATGTTGAATGTGTCACCTATTGGGAGAAACTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAGTATGACAAGCAGGGTGGAAATGACCATGAATTTATGAATCTGATCGGACTATCGGGCACACAGTTACCAGCCCTGAAGATACTATCAAGCAGTGTACTTCTCTCTTCCTGGGACATTAAGATTTTTGCAGTCAGCATATTTATTGATACTGGAAACAACATGGAGCAATGA

Protein sequence

>MsG0780039643.01.T01

MAALKPGVIALFDVDGTLTAPRKVFYSFTDNDTPSGATPEMLQFIQDLRKIVTVGVVGGSDLVKISEQLGQTVTNDYDYCFSENGLVAHKQGQLIGTQSLKTFIGDEQLKEFINFTLHYIADLDIPIKRLGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKQGGNDHEFMNLIGLSGTQLPALKILSSSVLLSSWDIKIFAVSIFIDTGNNMEQ*