Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000042.01.T01 | XP_003589519.1 | 97.857 | 140 | 3 | 0 | 2 | 141 | 29 | 168 | 6.93E-89 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000042.01.T01 | Q7X659 | 77.536 | 138 | 31 | 0 | 2 | 139 | 29 | 166 | 1.72E-75 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000042.01.T01 | G7I7R8 | 97.857 | 140 | 3 | 0 | 2 | 141 | 29 | 168 | 3.31e-89 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048178.01 | MsG0180000042.01 | 0.808550 | 2.931192e-50 | 1.680925e-47 |
| MsG0080048602.01 | MsG0180000042.01 | 0.824692 | 7.034671e-54 | 6.277649e-51 |
| MsG0180000042.01 | MsG0180000146.01 | 0.801249 | 9.843301e-49 | 4.678568e-46 |
| MsG0180000042.01 | MsG0180000196.01 | 0.808493 | 3.015079e-50 | 1.726429e-47 |
| MsG0180000042.01 | MsG0180000555.01 | 0.810867 | 9.310917e-51 | 5.677333e-48 |
| MsG0180000042.01 | MsG0180000741.01 | 0.834337 | 3.177035e-56 | 3.759014e-53 |
| MsG0180000042.01 | MsG0180002071.01 | 0.845056 | 5.152146e-59 | 8.481787e-56 |
| MsG0180000042.01 | MsG0180002072.01 | 0.838000 | 3.728838e-57 | 4.928457e-54 |
| MsG0180000042.01 | MsG0180004385.01 | 0.816948 | 4.250141e-52 | 3.054153e-49 |
| MsG0180000042.01 | MsG0180005985.01 | 0.808804 | 2.586923e-50 | 1.493290e-47 |
| MsG0180000042.01 | MsG0180006098.01 | 0.802886 | 4.533803e-49 | 2.246426e-46 |
| MsG0180000042.01 | MsG0180006186.01 | 0.825433 | 4.699062e-54 | 4.282270e-51 |
| MsG0180000042.01 | MsG0180006207.01 | 0.806849 | 6.736389e-50 | 3.695226e-47 |
| MsG0180000042.01 | MsG0180006225.01 | 0.805377 | 1.374968e-49 | 7.262856e-47 |
| MsG0180000042.01 | MsG0280006367.01 | 0.812274 | 4.603391e-51 | 2.914210e-48 |
| MsG0180000042.01 | MsG0280006432.01 | 0.826211 | 3.072962e-54 | 2.863306e-51 |
| MsG0180000042.01 | MsG0280007048.01 | 0.817787 | 2.751444e-52 | 2.023038e-49 |
| MsG0180000042.01 | MsG0280007087.01 | 0.801532 | 8.611822e-49 | 4.122544e-46 |
| MsG0180000042.01 | MsG0280007496.01 | 0.820491 | 6.669537e-53 | 5.285020e-50 |
| MsG0180000042.01 | MsG0280007819.01 | 0.833039 | 6.705886e-56 | 7.631324e-53 |
| MsG0180000042.01 | MsG0280010816.01 | 0.818633 | 1.770222e-52 | 1.332191e-49 |
| MsG0180000042.01 | MsG0280010932.01 | 0.836156 | 1.103743e-56 | 1.379258e-53 |
| MsG0180000042.01 | MsG0280011085.01 | 0.836136 | 1.116828e-56 | 1.394758e-53 |
| MsG0180000042.01 | MsG0280011201.01 | 0.823813 | 1.131683e-53 | 9.848778e-51 |
| MsG0180000042.01 | MsG0280011336.01 | 0.847103 | 1.429297e-59 | 2.513634e-56 |
| MsG0180000042.01 | MsG0380014138.01 | 0.818234 | 2.180234e-52 | 1.622709e-49 |
| MsG0180000042.01 | MsG0380015436.01 | 0.838893 | 2.193241e-57 | 2.978578e-54 |
| MsG0180000042.01 | MsG0380015713.01 | 0.800219 | 1.597279e-48 | 7.396121e-46 |
| MsG0180000042.01 | MsG0380015878.01 | 0.825785 | 3.879707e-54 | 3.571587e-51 |
| MsG0180000042.01 | MsG0380016209.01 | 0.810230 | 1.278445e-50 | 7.663850e-48 |
| MsG0180000042.01 | MsG0380016517.01 | 0.802731 | 4.880374e-49 | 2.408678e-46 |
| MsG0180000042.01 | MsG0380016909.01 | 0.809703 | 1.659715e-50 | 9.813686e-48 |
| MsG0180000042.01 | MsG0380017045.01 | 0.828138 | 1.062120e-54 | 1.046543e-51 |
| MsG0180000042.01 | MsG0380017139.01 | 0.819643 | 1.042627e-52 | 8.069248e-50 |
| MsG0180000042.01 | MsG0380017452.01 | 0.809530 | 1.807622e-50 | 1.063936e-47 |
| MsG0180000042.01 | MsG0480018251.01 | 0.800947 | 1.134888e-48 | 5.353240e-46 |
| MsG0180000042.01 | MsG0480019289.01 | 0.805160 | 1.526520e-49 | 8.018644e-47 |
| MsG0180000042.01 | MsG0480021900.01 | 0.834645 | 2.659676e-56 | 3.175746e-53 |
| MsG0180000042.01 | MsG0480022261.01 | 0.820502 | 6.629701e-53 | 5.254979e-50 |
| MsG0180000042.01 | MsG0480022552.01 | 0.817207 | 3.716619e-52 | 2.689527e-49 |
| MsG0180000042.01 | MsG0480022597.01 | 0.817478 | 3.229556e-52 | 2.354617e-49 |
| MsG0180000042.01 | MsG0480022598.01 | 0.838296 | 3.128750e-57 | 4.172073e-54 |
| MsG0180000042.01 | MsG0480023460.01 | 0.800275 | 1.555418e-48 | 7.212663e-46 |
| MsG0180000042.01 | MsG0580024157.01 | 0.800830 | 1.199158e-48 | 5.639350e-46 |
| MsG0180000042.01 | MsG0580024960.01 | 0.808111 | 3.636313e-50 | 2.061320e-47 |
| MsG0180000042.01 | MsG0580025907.01 | 0.823561 | 1.296652e-53 | 1.120308e-50 |
| MsG0180000042.01 | MsG0580026664.01 | 0.805499 | 1.295878e-49 | 6.866598e-47 |
| MsG0180000042.01 | MsG0580029208.01 | 0.809818 | 1.568054e-50 | 9.299796e-48 |
| MsG0180000042.01 | MsG0580029348.01 | 0.820250 | 7.572984e-53 | 5.961073e-50 |
| MsG0180000042.01 | MsG0580029639.01 | 0.805738 | 1.154771e-49 | 6.157074e-47 |
| MsG0180000042.01 | MsG0680033302.01 | 0.819442 | 1.158773e-52 | 8.918217e-50 |
| MsG0180000042.01 | MsG0680034067.01 | 0.801660 | 8.109767e-49 | 3.894578e-46 |
| MsG0180000042.01 | MsG0680034757.01 | 0.815729 | 7.964449e-52 | 5.535389e-49 |
| MsG0180000042.01 | MsG0680035737.01 | 0.817581 | 3.061038e-52 | 2.237945e-49 |
| MsG0180000042.01 | MsG0780037975.01 | 0.805424 | 1.343701e-49 | 7.106305e-47 |
| MsG0180000042.01 | MsG0780039712.01 | 0.800536 | 1.376397e-48 | 6.424755e-46 |
| MsG0180000042.01 | MsG0780041033.01 | 0.851525 | 8.386252e-61 | 1.702142e-57 |
| MsG0180000042.01 | MsG0780041245.01 | 0.807673 | 4.506947e-50 | 2.525614e-47 |
| MsG0180000042.01 | MsG0780041371.01 | 0.803746 | 3.009637e-49 | 1.524415e-46 |
| MsG0180000042.01 | MsG0780041787.01 | 0.802498 | 5.451490e-49 | 2.674484e-46 |
| MsG0180000042.01 | MsG0880043145.01 | 0.821705 | 3.502462e-53 | 2.871031e-50 |
| MsG0180000042.01 | MsG0880043750.01 | 0.803148 | 4.002212e-49 | 1.996301e-46 |
| MsG0180000042.01 | MsG0880044917.01 | 0.807869 | 4.093769e-50 | 2.305847e-47 |
| MsG0180000042.01 | MsG0880045448.01 | 0.805550 | 1.264412e-49 | 6.708524e-47 |
| MsG0180000042.01 | MsG0880045639.01 | 0.804266 | 2.346436e-49 | 1.204455e-46 |
| MsG0180000042.01 | MsG0880045936.01 | 0.830109 | 3.533883e-55 | 3.687878e-52 |
| MsG0180000042.01 | MsG0880046366.01 | 0.810212 | 1.289687e-50 | 7.727514e-48 |
| MsG0180000042.01 | MsG0880047745.01 | 0.810459 | 1.140821e-50 | 6.880312e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000042.01.T01 | MTR_1g025610 | 97.857 | 140 | 3 | 0 | 2 | 141 | 29 | 168 | 8.40e-93 | 285 |
| MsG0180000042.01.T01 | MTR_5g022610 | 82.609 | 138 | 24 | 0 | 2 | 139 | 29 | 166 | 3.15e-80 | 249 |
| MsG0180000042.01.T01 | MTR_5g022610 | 82.609 | 138 | 24 | 0 | 2 | 139 | 29 | 166 | 3.36e-79 | 249 |
| MsG0180000042.01.T01 | MTR_1g025610 | 99.038 | 104 | 1 | 0 | 38 | 141 | 1 | 104 | 7.24e-68 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000042.01.T01 | AT2G17790 | 77.536 | 138 | 31 | 0 | 2 | 139 | 29 | 166 | 1.75e-76 | 242 |
| MsG0180000042.01.T01 | AT1G75850 | 81.159 | 138 | 26 | 0 | 2 | 139 | 30 | 167 | 8.70e-76 | 240 |
| MsG0180000042.01.T01 | AT3G51310 | 74.638 | 138 | 35 | 0 | 2 | 139 | 26 | 163 | 6.42e-70 | 224 |
Find 22 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTAAGAACGTCCCTTAC+AGG | 0.258965 | 1:-707719 | None:intergenic |
| CAGGAGTATCCTTACATCTA+AGG | 0.365487 | 1:-707700 | None:intergenic |
| TTGAATTGAATTGCGTTTGC+AGG | 0.382991 | 1:+706276 | None:intergenic |
| AGAGACAAGTTGCCTGATAT+TGG | 0.383749 | 1:+707818 | MsG0180000042.01.T01:CDS |
| TCGTATTCAGAGCCAATATC+AGG | 0.386867 | 1:-707830 | None:intergenic |
| GCGAAAACCACTTACAATCT+AGG | 0.393011 | 1:-707070 | None:intergenic |
| CACAGTTCATAATATTTATG+AGG | 0.433658 | 1:-706373 | None:intergenic |
| ATCTGTCTACCTTAGATGTA+AGG | 0.462531 | 1:+707691 | MsG0180000042.01.T01:CDS |
| TATGAGCTTGTTCAACATGC+TGG | 0.491414 | 1:+707037 | MsG0180000042.01.T01:CDS |
| GATGTAAGGATACTCCTGTA+AGG | 0.494334 | 1:+707705 | MsG0180000042.01.T01:CDS |
| AGGTATCTTCTTTGCACGGT+TGG | 0.502581 | 1:+707668 | MsG0180000042.01.T01:intron |
| TGCCAGGTATCTTCTTTGCA+CGG | 0.522853 | 1:+707664 | MsG0180000042.01.T01:intron |
| GGTGTTCAGCATCCGATTCG+TGG | 0.538893 | 1:+707761 | MsG0180000042.01.T01:CDS |
| TTGGCTCTGAATACGAGGAT+AGG | 0.591352 | 1:+707837 | MsG0180000042.01.T01:CDS |
| ATGAGCTTGTTCAACATGCT+GGG | 0.600118 | 1:+707038 | MsG0180000042.01.T01:CDS |
| ATGTAAGGATACTCCTGTAA+GGG | 0.600906 | 1:+707706 | MsG0180000042.01.T01:CDS |
| GGACGTTCTTAAAGACCTAG+TGG | 0.614680 | 1:+707727 | MsG0180000042.01.T01:CDS |
| CACCGCGACACATTTCCACT+AGG | 0.615529 | 1:-707742 | None:intergenic |
| TTTAAAGATGAAAGTAGACA+TGG | 0.632800 | 1:+706995 | MsG0180000042.01.T01:CDS |
| TGATATTGGCTCTGAATACG+AGG | 0.659487 | 1:+707832 | MsG0180000042.01.T01:CDS |
| GACCTAGTGGAAATGTGTCG+CGG | 0.671661 | 1:+707740 | MsG0180000042.01.T01:CDS |
| TCTGAATACGAGGATAGGTG+AGG | 0.699806 | 1:+707842 | MsG0180000042.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATATATTTCATTGATA+TGG | + | Chr1:707310-707329 | MsG0180000042.01.T01:intron | 15.0% |
| !!! | ATTTTTGCTTATGTTATATA+AGG | + | Chr1:706475-706494 | MsG0180000042.01.T01:intron | 15.0% |
| ! | AGAAGCTAGAACTAAAATAA+AGG | + | Chr1:707278-707297 | MsG0180000042.01.T01:intron | 25.0% |
| ! | ATAAGTACAACTACAAGAAA+TGG | - | Chr1:707123-707142 | None:intergenic | 25.0% |
| ! | CACAGTTCATAATATTTATG+AGG | - | Chr1:706376-706395 | None:intergenic | 25.0% |
| ! | CATAATTGAATGTAAATCAC+AGG | - | Chr1:706532-706551 | None:intergenic | 25.0% |
| ! | TACCAAATTAGCTACATAAT+AGG | + | Chr1:707530-707549 | MsG0180000042.01.T01:intron | 25.0% |
| ! | TTTAAAGATGAAAGTAGACA+TGG | + | Chr1:706995-707014 | MsG0180000042.01.T01:CDS | 25.0% |
| CATTGTATGGTCTCATAATT+TGG | - | Chr1:707449-707468 | None:intergenic | 30.0% | |
| TATATTGCCTAGATTGTAAG+TGG | + | Chr1:707063-707082 | MsG0180000042.01.T01:intron | 30.0% | |
| TGATTTCGATTATAGTCATG+CGG | + | Chr1:707162-707181 | MsG0180000042.01.T01:intron | 30.0% | |
| ! | ACAAATTTTATCGCACTAAG+TGG | - | Chr1:707414-707433 | None:intergenic | 30.0% |
| ! | ATTGTTGTTAATTTACTGCC+AGG | + | Chr1:707648-707667 | MsG0180000042.01.T01:intron | 30.0% |
| ! | CAAATTTTATCGCACTAAGT+GGG | - | Chr1:707413-707432 | None:intergenic | 30.0% |
| ! | CAGCTTATATAAGCATTGTA+TGG | - | Chr1:707462-707481 | None:intergenic | 30.0% |
| ! | GCTTCTCTTATAGTTTTTCT+AGG | - | Chr1:707361-707380 | None:intergenic | 30.0% |
| ! | TTACTCTCAAAGGATCTTTT+AGG | - | Chr1:707556-707575 | None:intergenic | 30.0% |
| ! | TTGTTGAGTCGTTATTCTTT+TGG | + | Chr1:707578-707597 | MsG0180000042.01.T01:intron | 30.0% |
| AAGGATTCTACCTATCATCA+TGG | + | Chr1:707605-707624 | MsG0180000042.01.T01:intron | 35.0% | |
| ATCTGTCTACCTTAGATGTA+AGG | + | Chr1:707691-707710 | MsG0180000042.01.T01:CDS | 35.0% | |
| ATGTAAGGATACTCCTGTAA+GGG | + | Chr1:707706-707725 | MsG0180000042.01.T01:CDS | 35.0% | |
| CTCAAAACCCAATTCAAGTA+GGG | + | Chr1:707233-707252 | MsG0180000042.01.T01:intron | 35.0% | |
| CTCAACAAGTTTACTCTCAA+AGG | - | Chr1:707566-707585 | None:intergenic | 35.0% | |
| GGCCTATTATGTAGCTAATT+TGG | - | Chr1:707535-707554 | None:intergenic | 35.0% | |
| GTCATGCGGTTATTTATGAA+TGG | + | Chr1:707176-707195 | MsG0180000042.01.T01:intron | 35.0% | |
| TCATTCAGAACCATGATGAT+AGG | - | Chr1:707618-707637 | None:intergenic | 35.0% | |
| TCTCAAAACCCAATTCAAGT+AGG | + | Chr1:707232-707251 | MsG0180000042.01.T01:intron | 35.0% | |
| TTCAGCTGTTCATGTCTATT+TGG | + | Chr1:706909-706928 | MsG0180000042.01.T01:intron | 35.0% | |
| TTCCTCTACCATTAGGTTTA+GGG | - | Chr1:707336-707355 | None:intergenic | 35.0% | |
| TTGAACGTAATCACAAGTGT+TGG | - | Chr1:706657-706676 | None:intergenic | 35.0% | |
| ! | TCGTTATTCTTTTGGTCTCA+AGG | + | Chr1:707586-707605 | MsG0180000042.01.T01:intron | 35.0% |
| ! | TGAGAGCTTTTGATGAGTTA+CGG | + | Chr1:706957-706976 | MsG0180000042.01.T01:CDS | 35.0% |
| ! | TTGGTAACACTACTATTGTG+TGG | - | Chr1:707516-707535 | None:intergenic | 35.0% |
| AGAGACAAGTTGCCTGATAT+TGG | + | Chr1:707818-707837 | MsG0180000042.01.T01:CDS | 40.0% | |
| AGTGTGACCCTACTTGAATT+GGG | - | Chr1:707243-707262 | None:intergenic | 40.0% | |
| CTCAAAAACAGACCACGAAT+CGG | - | Chr1:707776-707795 | None:intergenic | 40.0% | |
| CTTCCTCTACCATTAGGTTT+AGG | - | Chr1:707337-707356 | None:intergenic | 40.0% | |
| GATGTAAGGATACTCCTGTA+AGG | + | Chr1:707705-707724 | MsG0180000042.01.T01:CDS | 40.0% | |
| GCGAAAACCACTTACAATCT+AGG | - | Chr1:707073-707092 | None:intergenic | 40.0% | |
| GTTGCACTTTCACTTGTGAT+AGG | + | Chr1:706612-706631 | MsG0180000042.01.T01:intron | 40.0% | |
| TAGCTTCTGTCTCTGAATTC+TGG | - | Chr1:707266-707285 | None:intergenic | 40.0% | |
| TATGATGAGTGTCAGTGTGT+TGG | + | Chr1:706696-706715 | MsG0180000042.01.T01:intron | 40.0% | |
| TCGTATTCAGAGCCAATATC+AGG | - | Chr1:707833-707852 | None:intergenic | 40.0% | |
| TGATATGGCCCTAAACCTAA+TGG | + | Chr1:707325-707344 | MsG0180000042.01.T01:intron | 40.0% | |
| ! | ATGAGCTTGTTCAACATGCT+GGG | + | Chr1:707038-707057 | MsG0180000042.01.T01:CDS | 40.0% |
| ! | GTATGTGTTGGTGCTTCATA+GGG | + | Chr1:706881-706900 | MsG0180000042.01.T01:intron | 40.0% |
| ! | TATGAGCTTGTTCAACATGC+TGG | + | Chr1:707037-707056 | MsG0180000042.01.T01:CDS | 40.0% |
| ! | TCTTTAAGAACGTCCCTTAC+AGG | - | Chr1:707722-707741 | None:intergenic | 40.0% |
| ! | TGTATGTGTTGGTGCTTCAT+AGG | + | Chr1:706880-706899 | MsG0180000042.01.T01:intron | 40.0% |
| ! | TTTTGATGAGTTACGGAGGT+TGG | + | Chr1:706964-706983 | MsG0180000042.01.T01:CDS | 40.0% |
| !! | AACGTAATCACAAGTGTTGG+TGG | - | Chr1:706654-706673 | None:intergenic | 40.0% |
| !! | CAGGAGTATCCTTACATCTA+AGG | - | Chr1:707703-707722 | None:intergenic | 40.0% |
| !! | TGATATTGGCTCTGAATACG+AGG | + | Chr1:707832-707851 | MsG0180000042.01.T01:CDS | 40.0% |
| AACCGTGCAAAGAAGATACC+TGG | - | Chr1:707669-707688 | None:intergenic | 45.0% | |
| AGGTATCTTCTTTGCACGGT+TGG | + | Chr1:707668-707687 | MsG0180000042.01.T01:intron | 45.0% | |
| CAACATGTCAGTGTCGTGTT+TGG | + | Chr1:706857-706876 | MsG0180000042.01.T01:intron | 45.0% | |
| CTAGGTCTTCCTCTACCATT+AGG | - | Chr1:707343-707362 | None:intergenic | 45.0% | |
| GAGTGTGACCCTACTTGAAT+TGG | - | Chr1:707244-707263 | None:intergenic | 45.0% | |
| GCACTTTCACTTGTGATAGG+AGG | + | Chr1:706615-706634 | MsG0180000042.01.T01:intron | 45.0% | |
| GGACGTTCTTAAAGACCTAG+TGG | + | Chr1:707727-707746 | MsG0180000042.01.T01:CDS | 45.0% | |
| TACTGAGACGTGACAAACAC+TGG | - | Chr1:706787-706806 | None:intergenic | 45.0% | |
| TGCCAGGTATCTTCTTTGCA+CGG | + | Chr1:707664-707683 | MsG0180000042.01.T01:intron | 45.0% | |
| ! | GAGCTTTTGATGAGTTACGG+AGG | + | Chr1:706960-706979 | MsG0180000042.01.T01:CDS | 45.0% |
| ! | TGTGTTGGTGTCTCTGTAAG+TGG | + | Chr1:706711-706730 | MsG0180000042.01.T01:intron | 45.0% |
| !! | GTCGTGTTTGGTGTATGTGT+TGG | + | Chr1:706869-706888 | MsG0180000042.01.T01:intron | 45.0% |
| !! | TTGGCTCTGAATACGAGGAT+AGG | + | Chr1:707837-707856 | MsG0180000042.01.T01:CDS | 45.0% |
| !!! | CGATTCGTGGTCTGTTTTTG+AGG | + | Chr1:707774-707793 | MsG0180000042.01.T01:CDS | 45.0% |
| AGCGTCGTGTGTGCTTCATA+GGG | + | Chr1:706579-706598 | MsG0180000042.01.T01:intron | 50.0% | |
| CATGTACACATGTCGGACAC+AGG | - | Chr1:706506-706525 | None:intergenic | 50.0% | |
| CTGTGTCCGACATGTGTACA+TGG | + | Chr1:706504-706523 | MsG0180000042.01.T01:intron | 50.0% | |
| GACCTAGTGGAAATGTGTCG+CGG | + | Chr1:707740-707759 | MsG0180000042.01.T01:CDS | 50.0% | |
| GGCCCTAAACCTAATGGTAG+AGG | + | Chr1:707331-707350 | MsG0180000042.01.T01:intron | 50.0% | |
| ! | ACACCTTCTGTCAGAAGCGT+CGG | - | Chr1:706762-706781 | None:intergenic | 50.0% |
| ! | CAGGTGCCATGTACACATGT+CGG | - | Chr1:706513-706532 | None:intergenic | 50.0% |
| CACCGCGACACATTTCCACT+AGG | - | Chr1:707745-707764 | None:intergenic | 55.0% | |
| CAGCGTCGTGTGTGCTTCAT+AGG | + | Chr1:706578-706597 | MsG0180000042.01.T01:intron | 55.0% | |
| ! | GGTGTTCAGCATCCGATTCG+TGG | + | Chr1:707761-707780 | MsG0180000042.01.T01:CDS | 55.0% |
| !! | CACAAGTGTTGGTGGCGTAC+TGG | - | Chr1:706646-706665 | None:intergenic | 55.0% |
| ! | GCACCGACGCTTCTGACAGA+AGG | + | Chr1:706756-706775 | MsG0180000042.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 706286 | 707862 | 706286 | ID=MsG0180000042.01;Name=MsG0180000042.01 |
| Chr1 | mRNA | 706286 | 707862 | 706286 | ID=MsG0180000042.01.T01;Parent=MsG0180000042.01;Name=MsG0180000042.01.T01;_AED=0.48;_eAED=0.49;_QI=0|1|0.33|1|0.5|0.33|3|0|141 |
| Chr1 | exon | 706286 | 706394 | 706286 | ID=MsG0180000042.01.T01:exon:7739;Parent=MsG0180000042.01.T01 |
| Chr1 | exon | 706954 | 707077 | 706954 | ID=MsG0180000042.01.T01:exon:7738;Parent=MsG0180000042.01.T01 |
| Chr1 | exon | 707670 | 707862 | 707670 | ID=MsG0180000042.01.T01:exon:7737;Parent=MsG0180000042.01.T01 |
| Chr1 | CDS | 706286 | 706394 | 706286 | ID=MsG0180000042.01.T01:cds;Parent=MsG0180000042.01.T01 |
| Chr1 | CDS | 706954 | 707077 | 706954 | ID=MsG0180000042.01.T01:cds;Parent=MsG0180000042.01.T01 |
| Chr1 | CDS | 707670 | 707862 | 707670 | ID=MsG0180000042.01.T01:cds;Parent=MsG0180000042.01.T01 |
| Gene Sequence |
| Protein sequence |
