AlfalfaGEDB | MsG0180000042.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000042.01

KEGG: K18468
GO: GO:0015031 GO:0030906 GO:0042147
PFAM: PF03635

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000042.01.T01	XP_003589519.1	97.857	140	3	0	2	141	29	168	6.93E-89	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000042.01.T01	Q7X659	77.536	138	31	0	2	139	29	166	1.72E-75	242

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000042.01.T01	G7I7R8	97.857	140	3	0	2	141	29	168	3.31e-89	285

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048178.01	MsG0180000042.01	0.808550	2.931192e-50	1.680925e-47
MsG0080048602.01	MsG0180000042.01	0.824692	7.034671e-54	6.277649e-51
MsG0180000042.01	MsG0180000146.01	0.801249	9.843301e-49	4.678568e-46
MsG0180000042.01	MsG0180000196.01	0.808493	3.015079e-50	1.726429e-47
MsG0180000042.01	MsG0180000555.01	0.810867	9.310917e-51	5.677333e-48
MsG0180000042.01	MsG0180000741.01	0.834337	3.177035e-56	3.759014e-53
MsG0180000042.01	MsG0180002071.01	0.845056	5.152146e-59	8.481787e-56
MsG0180000042.01	MsG0180002072.01	0.838000	3.728838e-57	4.928457e-54
MsG0180000042.01	MsG0180004385.01	0.816948	4.250141e-52	3.054153e-49
MsG0180000042.01	MsG0180005985.01	0.808804	2.586923e-50	1.493290e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000042.01.T01	MTR_1g025610	97.857	140	3	2	141	29	168	8.40e-93	285
MsG0180000042.01.T01	MTR_5g022610	82.609	138	24	2	139	29	166	3.15e-80	249
MsG0180000042.01.T01	MTR_5g022610	82.609	138	24	2	139	29	166	3.36e-79	249
MsG0180000042.01.T01	MTR_1g025610	99.038	104	1	38	141	1	104	7.24e-68	218

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000042.01.T01	AT2G17790	77.536	138	31	2	139	29	166	1.75e-76	242
MsG0180000042.01.T01	AT1G75850	81.159	138	26	2	139	30	167	8.70e-76	240
MsG0180000042.01.T01	AT3G51310	74.638	138	35	2	139	26	163	6.42e-70	224

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Find 22 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGACAAGTTGCCTGATAT+TGG	0.383749	1:+707818	MsG0180000042.01.T01:CDS
AGGTATCTTCTTTGCACGGT+TGG	0.502581	1:+707668	MsG0180000042.01.T01:intron
ATCTGTCTACCTTAGATGTA+AGG	0.462531	1:+707691	MsG0180000042.01.T01:CDS
ATGAGCTTGTTCAACATGCT+GGG	0.600118	1:+707038	MsG0180000042.01.T01:CDS
ATGTAAGGATACTCCTGTAA+GGG	0.600906	1:+707706	MsG0180000042.01.T01:CDS
CACAGTTCATAATATTTATG+AGG	0.433658	1:-706373	None:intergenic
CACCGCGACACATTTCCACT+AGG	0.615529	1:-707742	None:intergenic
CAGGAGTATCCTTACATCTA+AGG	0.365487	1:-707700	None:intergenic
GACCTAGTGGAAATGTGTCG+CGG	0.671661	1:+707740	MsG0180000042.01.T01:CDS
GATGTAAGGATACTCCTGTA+AGG	0.494334	1:+707705	MsG0180000042.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTGTATGGTCTCATAATT+TGG	-	Chr1:707449-707468	None:intergenic	30.0%
TATATTGCCTAGATTGTAAG+TGG	+	Chr1:707063-707082	MsG0180000042.01.T01:intron	30.0%
TGATTTCGATTATAGTCATG+CGG	+	Chr1:707162-707181	MsG0180000042.01.T01:intron	30.0%
AAGGATTCTACCTATCATCA+TGG	+	Chr1:707605-707624	MsG0180000042.01.T01:intron	35.0%
ATCTGTCTACCTTAGATGTA+AGG	+	Chr1:707691-707710	MsG0180000042.01.T01:CDS	35.0%
ATGTAAGGATACTCCTGTAA+GGG	+	Chr1:707706-707725	MsG0180000042.01.T01:CDS	35.0%
CTCAAAACCCAATTCAAGTA+GGG	+	Chr1:707233-707252	MsG0180000042.01.T01:intron	35.0%
CTCAACAAGTTTACTCTCAA+AGG	-	Chr1:707566-707585	None:intergenic	35.0%
GGCCTATTATGTAGCTAATT+TGG	-	Chr1:707535-707554	None:intergenic	35.0%
GTCATGCGGTTATTTATGAA+TGG	+	Chr1:707176-707195	MsG0180000042.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	706286	707862	706286	ID=MsG0180000042.01;Name=MsG0180000042.01
Chr1	mRNA	706286	707862	706286	ID=MsG0180000042.01.T01;Parent=MsG0180000042.01;Name=MsG0180000042.01.T01;_AED=0.48;_eAED=0.49;_QI=0\|1\|0.33\|1\|0.5\|0.33\|3\|0\|141
Chr1	exon	706286	706394	706286	ID=MsG0180000042.01.T01:exon:7739;Parent=MsG0180000042.01.T01
Chr1	exon	706954	707077	706954	ID=MsG0180000042.01.T01:exon:7738;Parent=MsG0180000042.01.T01
Chr1	exon	707670	707862	707670	ID=MsG0180000042.01.T01:exon:7737;Parent=MsG0180000042.01.T01
Chr1	CDS	706286	706394	706286	ID=MsG0180000042.01.T01:cds;Parent=MsG0180000042.01.T01
Chr1	CDS	706954	707077	706954	ID=MsG0180000042.01.T01:cds;Parent=MsG0180000042.01.T01
Chr1	CDS	707670	707862	707670	ID=MsG0180000042.01.T01:cds;Parent=MsG0180000042.01.T01

Gene Sequence

>MsG0180000042.01.T01

TTGCGTTTGCAGGATGATAACAATCTCAGAGATTCACTCAAATACTCAGCACAGATGCTATCTGAACTTCGAACTTCTAGACTCTCTCCTCATAAATATTATGAACTGTATATGAGAGCTTTTGATGAGTTACGGAGGTTGGAGATGTTCTTTAAAGATGAAAGTAGACATGGTGTTTCGATTGTTGATTTGTATGAGCTTGTTCAACATGCTGGGAATATATTGCCTAGATTGTATCTTCTTTGCACGGTTGGATCTGTCTACCTTAGATGTAAGGATACTCCTGTAAGGGACGTTCTTAAAGACCTAGTGGAAATGTGTCGCGGTGTTCAGCATCCGATTCGTGGTCTGTTTTTGAGGAGTTATCTTTCTCAAGTCAGTAGAGACAAGTTGCCTGATATTGGCTCTGAATACGAGGATAGGTGA

Protein sequence

>MsG0180000042.01.T01

LRLQDDNNLRDSLKYSAQMLSELRTSRLSPHKYYELYMRAFDELRRLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDTPVRDVLKDLVEMCRGVQHPIRGLFLRSYLSQVSRDKLPDIGSEYEDR*