AlfalfaGEDB | MsG0880046366.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046366.01

KEGG: K10084
GO: GO:0003824 GO:0004571 GO:0005509 GO:0016020
PFAM: PF01532

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046366.01.T01	XP_003608915.1	99.694	327	1	0	16	342	45	371	0	674

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046366.01.T01	Q9SXC9	82.675	329	57	0	14	342	43	371	0	578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046366.01.T01	G7JNQ9	99.694	327	1	0	16	342	45	371	0.0	674

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0880046366.01	0.817686	2.899270e-52	2.125790e-49
MsG0080048765.01	MsG0880046366.01	0.808798	2.594454e-50	1.497401e-47
MsG0180000042.01	MsG0880046366.01	0.810212	1.289687e-50	7.727514e-48
MsG0180000100.01	MsG0880046366.01	0.803491	3.399378e-49	1.710603e-46
MsG0180000475.01	MsG0880046366.01	0.823860	1.103351e-53	9.614756e-51
MsG0180000494.01	MsG0880046366.01	0.808802	2.589632e-50	1.494774e-47
MsG0180000555.01	MsG0880046366.01	0.829391	5.283380e-55	5.400420e-52
MsG0180000585.01	MsG0880046366.01	0.800363	1.492464e-48	6.936325e-46
MsG0180000741.01	MsG0880046366.01	0.847773	9.352075e-60	1.679953e-56
MsG0180000797.01	MsG0880046366.01	0.816920	4.311275e-52	3.095505e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046366.01.T01	MTR_4g106370	99.694	327	1	0	16	342	45	371	0.0	674
MsG0880046366.01.T01	MTR_1g076280	46.526	331	161	2	13	342	52	367	3.97e-102	311
MsG0880046366.01.T01	MTR_1g076280	46.526	331	161	2	13	342	52	367	2.50e-101	311
MsG0880046366.01.T01	MTR_4g127310	33.876	307	162	7	18	312	123	400	6.17e-36	137
MsG0880046366.01.T01	MTR_4g008140	33.077	260	139	5	18	271	118	348	3.88e-30	120
MsG0880046366.01.T01	MTR_2g019520	30.364	247	151	6	14	254	142	373	5.25e-23	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046366.01.T01	AT1G27520	82.675	329	57	0	14	342	43	371	0.0	578
MsG0880046366.01.T01	AT5G43710	47.401	327	157	1	16	342	48	359	1.78e-104	318
MsG0880046366.01.T01	AT5G43710	47.401	327	157	1	16	342	48	359	2.28e-104	317
MsG0880046366.01.T01	AT5G43710	47.401	327	157	1	16	342	48	359	6.59e-104	318
MsG0880046366.01.T01	AT1G51590	30.744	309	170	7	18	312	3	281	4.89e-33	127
MsG0880046366.01.T01	AT3G21160	30.449	312	174	7	14	312	104	385	7.49e-33	126
MsG0880046366.01.T01	AT1G51590	30.323	310	178	5	14	312	103	385	7.62e-33	128
MsG0880046366.01.T01	AT3G21160	30.449	312	174	7	14	312	104	385	7.79e-32	125
MsG0880046366.01.T01	AT1G30000	27.899	276	175	6	14	280	134	394	2.15e-24	104
MsG0880046366.01.T01	AT1G30000	27.899	276	175	6	14	280	154	414	2.37e-24	104

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Find 71 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTACTGATTCATATAT+GGG	0.379529	8:+72442807	None:intergenic
AACAATACCGAATTCGAGAA+GGG	0.609136	8:-72443829	MsG0880046366.01.T01:CDS
AAGCTACTGATTCATATATG+GGG	0.664963	8:+72442808	None:intergenic
AAGTGAGCTGGGAAATTTGA+AGG	0.467826	8:-72444138	MsG0880046366.01.T01:intron
AATAGTCCTCCTTTCCGAAA+AGG	0.473341	8:+72442414	None:intergenic
AATTCGAGAAGGGAGTGCGC+TGG	0.622257	8:-72443819	MsG0880046366.01.T01:CDS
AATTTGGAGTGCTGCCAGAG+AGG	0.686632	8:-72441979	MsG0880046366.01.T01:CDS
ACCACACTTGACGTGTCAAC+TGG	0.332248	8:-72442732	MsG0880046366.01.T01:CDS
ACCGTGAGTTCTTCTACGTG+TGG	0.609422	8:-72442006	MsG0880046366.01.T01:CDS
ACGTAAACCAGGTTCTTATT+GGG	0.283532	8:-72442054	MsG0880046366.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATAAGTATGCAGTTGAT+AGG	+	Chr8:72445395-72445414	None:intergenic	30.0%
AGGATCAACGAATTGAAATA+TGG	+	Chr8:72443313-72443332	None:intergenic	30.0%
ATAAATTTCCAACTTTGTGC+AGG	-	Chr8:72445135-72445154	MsG0880046366.01.T01:intron	30.0%
ATATAGATCCGATTTAAAGG+AGG	-	Chr8:72442018-72442037	MsG0880046366.01.T01:CDS	30.0%
ATGGAGATTCACAAAATTCA+CGG	+	Chr8:72443467-72443486	None:intergenic	30.0%
ATTGAACATTCTTCAGGAAT+TGG	-	Chr8:72445309-72445328	MsG0880046366.01.T01:intron	30.0%
CCAATATAGATCCGATTTAA+AGG	-	Chr8:72442015-72442034	MsG0880046366.01.T01:CDS	30.0%
CCTTTAAATCGGATCTATAT+TGG	+	Chr8:72442018-72442037	None:intergenic	30.0%
GGTTTGAAAATGTTGTTGAA+AGG	+	Chr8:72443097-72443116	None:intergenic	30.0%
GTTCAAGCTGCAATAATAAA+CGG	+	Chr8:72443964-72443983	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	72441964	72446069	72441964	ID=MsG0880046366.01;Name=MsG0880046366.01
Chr8	mRNA	72441964	72446069	72441964	ID=MsG0880046366.01.T01;Parent=MsG0880046366.01;Name=MsG0880046366.01.T01;_AED=0.51;_eAED=0.51;_QI=0\|0.9\|0.81\|0.90\|0.9\|0.90\|11\|0\|343
Chr8	exon	72446026	72446069	72446026	ID=MsG0880046366.01.T01:exon:7927;Parent=MsG0880046366.01.T01
Chr8	exon	72444276	72444318	72444276	ID=MsG0880046366.01.T01:exon:7926;Parent=MsG0880046366.01.T01
Chr8	exon	72444139	72444204	72444139	ID=MsG0880046366.01.T01:exon:7925;Parent=MsG0880046366.01.T01
Chr8	exon	72443995	72444056	72443995	ID=MsG0880046366.01.T01:exon:7924;Parent=MsG0880046366.01.T01
Chr8	exon	72443768	72443867	72443768	ID=MsG0880046366.01.T01:exon:7923;Parent=MsG0880046366.01.T01
Chr8	exon	72443408	72443590	72443408	ID=MsG0880046366.01.T01:exon:7922;Parent=MsG0880046366.01.T01
Chr8	exon	72442962	72443010	72442962	ID=MsG0880046366.01.T01:exon:7921;Parent=MsG0880046366.01.T01
Chr8	exon	72442697	72442876	72442697	ID=MsG0880046366.01.T01:exon:7920;Parent=MsG0880046366.01.T01
Chr8	exon	72442356	72442476	72442356	ID=MsG0880046366.01.T01:exon:7919;Parent=MsG0880046366.01.T01
Chr8	exon	72442148	72442229	72442148	ID=MsG0880046366.01.T01:exon:7918;Parent=MsG0880046366.01.T01
Chr8	exon	72441964	72442065	72441964	ID=MsG0880046366.01.T01:exon:7917;Parent=MsG0880046366.01.T01
Chr8	CDS	72446026	72446069	72446026	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72444276	72444318	72444276	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72444139	72444204	72444139	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72443995	72444056	72443995	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72443768	72443867	72443768	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72443408	72443590	72443408	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72442962	72443010	72442962	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72442697	72442876	72442697	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72442356	72442476	72442356	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72442148	72442229	72442148	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01
Chr8	CDS	72441964	72442065	72441964	ID=MsG0880046366.01.T01:cds;Parent=MsG0880046366.01.T01

Gene Sequence

>MsG0880046366.01.T01

ATGGATGAGAAGATCTTTGTTTTAACTATTGACTATGGAGAGAGGTTTCACCATGCCTATGACAATTATATGACTCATGCATTTCCGCATGATGAGCTAAAACCTCTCACAAAAACTTTCACTGATTCCCTAAGTGAGCTGGGAAATTTGAAGCTTGAACGTTTGCCGCAAGACTACAATGGCTCTGCTCTTTCGCTAATTGAATCGCTGTCTAGCCTTGTGATTATGGGCAACAATACCGAATTCGAGAAGGGAGTGCGCTGGCTTTCAGAAAATCTAAAATTTGACGTTGATGCCCGCATTAATCTTTTTGAGTGCAACATTAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTACTGGCATCTGATTCTTCAAAGAAGTTGCTACAAGGATCTTACAAGAATGAGCTACTAGGTCTGGCTGAAGATTTAGGGAAACGTTTTCTACCAGCGTTCAATACGCCTACTGGATTACCATATGCATGGATTAACTTGAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCATTGATTCTTGAAATGGGTGCTTTATCAAAACTGACTGGTGACCCCATATATGAATCAGTAGCTTTGCGAGCTCTCCGTAAGCTATGGAGTATGCAGAGCTTATTAAAATTATTTGGAACCACACTTGACGTGTCAACTGGGCAATGGATTGAACATTCTTCAGGAATTGGAGCTGGTGTAGATTCCTTCTATGAATATCTACTTAAAGCTCATATCCTTTTCGGAAAGGAGGACTATTGGAGAATGTTTCATTCTGCTTATGTTGCAGTGCAGAAGCATTTCAGACACGGTCCCTGGTACCACGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACAAGTCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATATATCTGCTGCTAATTCATCTCACCGTGAGTTCTTCTACGTGTGGAAGAAATTTGGAGTGCTGCCAGAGAGGTATTTTCTGATTTAG

Protein sequence

>MsG0880046366.01.T01

MDEKIFVLTIDYGERFHHAYDNYMTHAFPHDELKPLTKTFTDSLSELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLKFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLLQGSYKNELLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKLTGDPIYESVALRALRKLWSMQSLLKLFGTTLDVSTGQWIEHSSGIGAGVDSFYEYLLKAHILFGKEDYWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDISAANSSHREFFYVWKKFGVLPERYFLI*