AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037975.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037975.01.T01 MTR_0178s0030 95.660 530 19 2 43 569 1 529 0.0 957
MsG0780037975.01.T01 MTR_4g025420 36.804 413 227 6 175 569 23 419 6.97e-86 273
MsG0780037975.01.T01 MTR_8g087400 34.264 394 229 6 184 563 82 459 5.75e-64 217
MsG0780037975.01.T01 MTR_8g059485 34.961 389 228 9 184 563 65 437 2.93e-60 206
MsG0780037975.01.T01 MTR_8g059485 34.961 389 228 9 184 563 74 446 4.85e-60 206
MsG0780037975.01.T01 MTR_2g075910 32.398 392 239 7 184 562 75 453 2.57e-55 194
MsG0780037975.01.T01 MTR_3g462150 29.323 399 247 7 184 562 94 477 1.16e-43 162
MsG0780037975.01.T01 MTR_5g075180 27.820 399 244 7 176 565 79 442 3.10e-43 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037975.01.T01 AT3G60680 53.167 521 192 8 55 563 14 494 2.64e-179 515
MsG0780037975.01.T01 AT2G45260 38.636 396 214 6 184 564 39 420 1.33e-88 280
MsG0780037975.01.T01 AT1G53380 34.091 396 231 7 184 563 70 451 3.46e-62 212
MsG0780037975.01.T01 AT1G53380 34.091 396 231 7 184 563 70 451 3.46e-62 212
MsG0780037975.01.T01 AT1G53380 34.091 396 231 7 184 563 70 451 3.46e-62 212
MsG0780037975.01.T01 AT1G53380 34.091 396 231 7 184 563 70 451 3.46e-62 212
MsG0780037975.01.T01 AT1G53380 34.091 396 231 7 184 563 70 451 3.46e-62 212
MsG0780037975.01.T01 AT3G14870 30.913 427 261 8 157 566 56 465 3.54e-58 202
MsG0780037975.01.T01 AT3G14870 30.913 427 261 8 157 566 56 465 3.54e-58 202
MsG0780037975.01.T01 AT3G14870 30.913 427 261 8 157 566 56 465 3.54e-58 202
MsG0780037975.01.T01 AT3G14870 30.913 427 261 8 157 566 57 466 4.14e-58 201
MsG0780037975.01.T01 AT3G14870 30.913 427 261 8 157 566 60 469 4.42e-58 201
MsG0780037975.01.T01 AT1G29300 30.964 394 229 7 184 563 88 452 1.31e-50 181
MsG0780037975.01.T01 AT4G34080 34.164 281 157 5 184 450 15 281 1.12e-47 168
MsG0780037975.01.T01 AT2G30380 29.710 414 236 9 158 563 45 411 3.62e-45 165
MsG0780037975.01.T01 AT5G58960 28.954 411 242 9 184 562 88 480 6.68e-44 163
MsG0780037975.01.T01 AT5G58960 28.954 411 242 9 184 562 88 480 6.68e-44 163
MsG0780037975.01.T01 AT5G58960 28.954 411 242 9 184 562 163 555 1.08e-43 164
MsG0780037975.01.T01 AT4G33320 34.317 271 149 6 184 439 15 271 5.48e-41 150
MsG0780037975.01.T01 AT4G36100 40.860 93 53 1 184 274 15 107 3.95e-14 72.8
MsG0780037975.01.T01 AT2G32130 28.689 122 86 1 184 305 36 156 3.39e-11 62.4

Find 107 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAAGTTGTGTACAAATT+AGG 0.125406 7:+37509320 None:intergenic
AGGAAAGCGGGGTGGGATTT+AGG 0.182417 7:-37509005 MsG0780037975.01.T01:CDS
AGATCGTGCGACGTCGTTTC+GGG 0.231429 7:+37509503 None:intergenic
AGATCGAACGACGTCGTTTC+GGG 0.242209 7:+37509581 None:intergenic
GGAAGAGGAGGGTGTCGTTT+TGG 0.246195 7:+37509649 None:intergenic
TGTTTGTTTAGGGATGTTTC+AGG 0.249312 7:-37508907 MsG0780037975.01.T01:CDS
GGACGTGTGCGGTTTGTAAT+TGG 0.271045 7:+37509432 None:intergenic
TCGTTTCGGGTAGTGCTAAT+TGG 0.273993 7:+37509594 None:intergenic
ACCTTTGCCCTTCCCTTATT+CGG 0.290519 7:+37508432 None:intergenic
GAAAAGTTGTGTACAAATTA+GGG 0.293873 7:+37509321 None:intergenic
GGAAGAAGACGGTGTCGTTT+TGG 0.305583 7:+37509697 None:intergenic
GGTAAACGACGGTGTCGTTT+TGG 0.315847 7:+37509622 None:intergenic
GGCGAATTTCTGAAACATTT+CGG 0.321321 7:+37509859 None:intergenic
GGGTGAAGATGGTGTCGTTT+TGG 0.326091 7:+37509670 None:intergenic
TAGATCGTGCGACGTCGTTT+CGG 0.327779 7:+37509502 None:intergenic
TTGGGATGGCTAGCTCGATA+TGG 0.335510 7:-37508569 MsG0780037975.01.T01:CDS
TACCTTACCAATTCTAAAAC+CGG 0.342046 7:+37508392 None:intergenic
AGGTTGTTTGTTATTGTTGT+TGG 0.343196 7:+37509889 None:intergenic
GAGGTTAACCTGGCCGAATA+AGG 0.343519 7:-37508445 MsG0780037975.01.T01:CDS
TGTAAACGACGGTGTCGTTT+TGG 0.359861 7:+37509544 None:intergenic
GAGATCGAACGACGTCGTTT+CGG 0.366615 7:+37509580 None:intergenic
AGCGGCGAATGCGGTTCATC+CGG 0.374638 7:-37508979 MsG0780037975.01.T01:CDS
ATCGATCTTCGCCGCCGTTT+CGG 0.375334 7:-37509474 MsG0780037975.01.T01:CDS
TGTTCTTTGAATGTCTTAGA+AGG 0.379629 7:+37510023 None:intergenic
TTGTTCTATGAGGCATTTGT+TGG 0.411551 7:-37508588 MsG0780037975.01.T01:CDS
TGCGACGTCGTTTCGGGTAG+TGG 0.414451 7:+37509509 None:intergenic
GGAATTGCTTAGTATTCATC+CGG 0.418751 7:-37508736 MsG0780037975.01.T01:CDS
GGTTGTTTGTTATTGTTGTT+GGG 0.421742 7:+37509890 None:intergenic
CGTGTCGAATCGATTGCAAT+TGG 0.423270 7:-37509234 MsG0780037975.01.T01:CDS
TAGTTGTTTGAAGCAATTGT+TGG 0.431050 7:-37508781 MsG0780037975.01.T01:CDS
TGCCCTTCCCTTATTCGGCC+AGG 0.437856 7:+37508437 None:intergenic
TTATGTAAGTAGTTTCTGTT+TGG 0.438980 7:-37508352 MsG0780037975.01.T01:CDS
GAAGTTGGATGAGGTTCAAA+AGG 0.439815 7:-37509171 MsG0780037975.01.T01:CDS
TTGGTCGGTTATGATTTCTT+CGG 0.444894 7:+37509748 None:intergenic
GGAGATTCCAAGGATGGATC+TGG 0.459035 7:+37509947 None:intergenic
CAGAGTAAGTTGAGAACACT+AGG 0.459927 7:-37509260 MsG0780037975.01.T01:CDS
GTTTGTTTAGGGATGTTTCA+GGG 0.464560 7:-37508906 MsG0780037975.01.T01:CDS
GGAATGTGAATTTGTCTAAG+AGG 0.471069 7:-37509148 MsG0780037975.01.T01:CDS
AGGTTAACCTGGCCGAATAA+GGG 0.474296 7:-37508444 MsG0780037975.01.T01:CDS
GGGTAGTGCTAATTGGTTTG+AGG 0.477165 7:+37509601 None:intergenic
TTTGATGAGGAAAGCGGGGT+GGG 0.484462 7:-37509012 MsG0780037975.01.T01:CDS
CTATGAGGCATTTGTTGGGA+TGG 0.485726 7:-37508583 MsG0780037975.01.T01:CDS
TTGTTTGGAGATTCCAAGGA+TGG 0.488195 7:+37509941 None:intergenic
AAAATCGACGACTCCATTGA+AGG 0.490608 7:+37508663 None:intergenic
ATAAGGGAAGGGCAAAGGTC+GGG 0.494657 7:-37508428 MsG0780037975.01.T01:CDS
TTTGCTTCCAGATCCATCCT+TGG 0.498355 7:-37509954 MsG0780037975.01.T01:CDS
GTCGGTTATGATTTCTTCGG+TGG 0.500769 7:+37509751 None:intergenic
GTCGTTGAGTTTGTTCTATG+AGG 0.503096 7:-37508598 MsG0780037975.01.T01:CDS
TGTTCTATGAGGCATTTGTT+GGG 0.504434 7:-37508587 MsG0780037975.01.T01:CDS
AAGCAAAATTAGAGAGAAAG+TGG 0.504588 7:+37509970 None:intergenic
ATTGGTTTGATGAGGAAAGC+GGG 0.509874 7:-37509017 MsG0780037975.01.T01:CDS
GTCTTCATTGGAAGCTGAAG+TGG 0.511850 7:-37509291 MsG0780037975.01.T01:CDS
GCGGCGAATGCGGTTCATCC+GGG 0.517366 7:-37508978 MsG0780037975.01.T01:CDS
TGTCTAAGAGGCTTTGTAGT+GGG 0.518119 7:-37509136 MsG0780037975.01.T01:CDS
ATGAAGCGGTGTTGAATTCG+TGG 0.526031 7:-37508623 MsG0780037975.01.T01:CDS
CGAAGCTTCGAAAGCCGAAA+CGG 0.528599 7:+37509460 None:intergenic
TGAAACATTTCGGAGATTTG+AGG 0.528680 7:+37509869 None:intergenic
TTTAGGTTTAGCGGCGAATG+CGG 0.529314 7:-37508988 MsG0780037975.01.T01:CDS
AAGTTGGATGAGGTTCAAAA+GGG 0.531326 7:-37509170 MsG0780037975.01.T01:CDS
GAGGCTTATCCATCCTTCAA+TGG 0.534175 7:-37508676 MsG0780037975.01.T01:CDS
GATCTCCACCGCAGGATCAA+AGG 0.535514 7:+37508524 None:intergenic
GCTTCCAATGAAGACCCAAA+TGG 0.542057 7:+37509299 None:intergenic
GATGAGGAAGAAGTTGGATG+AGG 0.548856 7:-37509180 MsG0780037975.01.T01:CDS
TAAGGTAGTTATTCAATCGC+AGG 0.549285 7:-37508376 MsG0780037975.01.T01:CDS
GAAGAATTGATGATGTCAAA+TGG 0.554313 7:-37508837 MsG0780037975.01.T01:CDS
GTTTGATGAGGAAAGCGGGG+TGG 0.554497 7:-37509013 MsG0780037975.01.T01:CDS
TGAAATAAGCACTTTATCAG+TGG 0.565385 7:+37509385 None:intergenic
GCCGAATAAGGGAAGGGCAA+AGG 0.577715 7:-37508433 MsG0780037975.01.T01:CDS
GGGGTGGGATTTAGGTTTAG+CGG 0.581486 7:-37508997 MsG0780037975.01.T01:CDS
GAGATCTTTCAAGTGGAAAG+AGG 0.582032 7:-37508507 MsG0780037975.01.T01:CDS
GATTGGTTTGATGAGGAAAG+CGG 0.584028 7:-37509018 MsG0780037975.01.T01:CDS
TGATTTCTTCGGTGGAGTCG+AGG 0.587264 7:+37509759 None:intergenic
AATAAGGGAAGGGCAAAGGT+CGG 0.590403 7:-37508429 MsG0780037975.01.T01:CDS
GAATTGCTTAGTATTCATCC+GGG 0.593506 7:-37508735 MsG0780037975.01.T01:CDS
GGAATTCTCCATGGTATACA+TGG 0.594647 7:-37508481 MsG0780037975.01.T01:CDS
GCATGTGTCTAGTAATCCGA+TGG 0.594832 7:-37508757 MsG0780037975.01.T01:CDS
ACTTGAAAGATCTCCACCGC+AGG 0.597438 7:+37508516 None:intergenic
TGCGGTGGAGATCTTTCAAG+TGG 0.599702 7:-37508514 MsG0780037975.01.T01:CDS
TTCGTCGTTGAAGAATTCGA+AGG 0.600535 7:+37509817 None:intergenic
ACCTTACCAATTCTAAAACC+GGG 0.601989 7:+37508393 None:intergenic
TCGACGACTCCATTGAAGGA+TGG 0.602905 7:+37508667 None:intergenic
CACATCATCCATGTATACCA+TGG 0.608257 7:+37508473 None:intergenic
TAACCTGGCCGAATAAGGGA+AGG 0.609525 7:-37508440 MsG0780037975.01.T01:CDS
ATGTGACAAAGAGGTTAACC+TGG 0.611702 7:-37508455 MsG0780037975.01.T01:CDS
AACAACCTCGACGAATCCGA+TGG 0.614235 7:-37509791 MsG0780037975.01.T01:CDS
TTGGTTTGATGAGGAAAGCG+GGG 0.615065 7:-37509016 MsG0780037975.01.T01:CDS
GTCACATGCCTTTGATCCTG+CGG 0.618552 7:-37508532 MsG0780037975.01.T01:CDS
AAGAGGTGCGGAATTCTCCA+TGG 0.621328 7:-37508490 MsG0780037975.01.T01:CDS
TTCTATAAAAGGGACGTGTG+CGG 0.622155 7:+37509421 None:intergenic
TTGTCTAAGAGGCTTTGTAG+TGG 0.623025 7:-37509137 MsG0780037975.01.T01:CDS
AGTTGGATGAGGTTCAAAAG+GGG 0.625113 7:-37509169 MsG0780037975.01.T01:CDS
TTTGTGAGATGAAGTACGAG+AGG 0.636348 7:-37508695 MsG0780037975.01.T01:CDS
AGCTTCGAAAGCCGAAACGG+CGG 0.637708 7:+37509463 None:intergenic
TGATTTGGATCAGAATGAAG+CGG 0.638435 7:-37508637 MsG0780037975.01.T01:CDS
AACCTCGAAAACTCACAACC+CGG 0.647260 7:+37508717 None:intergenic
TTTGCATGATGGGTTTAGAG+CGG 0.650911 7:-37509063 MsG0780037975.01.T01:CDS
CAATTGCAATCGATTCGACA+CGG 0.651781 7:+37509235 None:intergenic
ACATGGATGATGTGACAAAG+AGG 0.653060 7:-37508464 MsG0780037975.01.T01:CDS
CTTTCAAGTGGAAAGAGGTG+CGG 0.653365 7:-37508502 MsG0780037975.01.T01:CDS
GCTTGAAAAGAAGCATGATG+AGG 0.654587 7:-37509210 MsG0780037975.01.T01:CDS
TGAATACTAAGCAATTCCAT+CGG 0.661643 7:+37508741 None:intergenic
ACATGCCTTTGATCCTGCGG+TGG 0.670442 7:-37508529 MsG0780037975.01.T01:CDS
AACCTGGCCGAATAAGGGAA+GGG 0.673729 7:-37508439 MsG0780037975.01.T01:CDS
AATTGGTTTGAGGTAAACGA+CGG 0.689992 7:+37509611 None:intergenic
AGAGTAAGTTGAGAACACTA+GGG 0.701061 7:-37509259 MsG0780037975.01.T01:CDS
AAGCGGTGTTGAATTCGTGG+AGG 0.727950 7:-37508620 MsG0780037975.01.T01:CDS
GATTGCGTTTGTGTAAACGA+CGG 0.786042 7:+37509533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATTTAGATTTGAAA+GGG - Chr7:37509566-37509585 MsG0780037975.01.T01:CDS 15.0%
!!! TTTTTTGATTTAGATTTGAA+AGG - Chr7:37509565-37509584 MsG0780037975.01.T01:CDS 15.0%
!!! ATGTTTAGTTTTGTTTTGTT+TGG + Chr7:37508452-37508471 None:intergenic 20.0%
! GAAAAGTTGTGTACAAATTA+GGG + Chr7:37509057-37509076 None:intergenic 25.0%
! TTATGTAAGTAGTTTCTGTT+TGG - Chr7:37510023-37510042 MsG0780037975.01.T01:CDS 25.0%
!! TCACGTTTTCTTCTATAAAA+GGG + Chr7:37508967-37508986 None:intergenic 25.0%
!! TTCACGTTTTCTTCTATAAA+AGG + Chr7:37508968-37508987 None:intergenic 25.0%
!! TTTTGTCGTATGTTTGTTTA+GGG - Chr7:37509458-37509477 MsG0780037975.01.T01:CDS 25.0%
!!! AAGTTTACGAAGATTTTGAT+TGG - Chr7:37509340-37509359 MsG0780037975.01.T01:CDS 25.0%
AAGCAAAATTAGAGAGAAAG+TGG + Chr7:37508408-37508427 None:intergenic 30.0%
GCGTTGTTTATTCGAAAAAA+GGG - Chr7:37509419-37509438 MsG0780037975.01.T01:CDS 30.0%
GGAAAAGTTGTGTACAAATT+AGG + Chr7:37509058-37509077 None:intergenic 30.0%
TGAAATAAGCACTTTATCAG+TGG + Chr7:37508993-37509012 None:intergenic 30.0%
TGAATACTAAGCAATTCCAT+CGG + Chr7:37509637-37509656 None:intergenic 30.0%
TGTTCTTTGAATGTCTTAGA+AGG + Chr7:37508355-37508374 None:intergenic 30.0%
! CTTTTGTCGTATGTTTGTTT+AGG - Chr7:37509457-37509476 MsG0780037975.01.T01:CDS 30.0%
! TAGTTGTTTGAAGCAATTGT+TGG - Chr7:37509594-37509613 MsG0780037975.01.T01:CDS 30.0%
! TGTACACAACTTTTCCATTT+GGG - Chr7:37509062-37509081 MsG0780037975.01.T01:CDS 30.0%
! TTGTACACAACTTTTCCATT+TGG - Chr7:37509061-37509080 MsG0780037975.01.T01:CDS 30.0%
!! AGGTTGTTTGTTATTGTTGT+TGG + Chr7:37508489-37508508 None:intergenic 30.0%
!! GAAGAATTGATGATGTCAAA+TGG - Chr7:37509538-37509557 MsG0780037975.01.T01:CDS 30.0%
!! GGTTGTTTGTTATTGTTGTT+GGG + Chr7:37508488-37508507 None:intergenic 30.0%
!! TACCTTACCAATTCTAAAAC+CGG + Chr7:37509986-37510005 None:intergenic 30.0%
!! TGATGTTTTGTTGAGTGTTA+GGG - Chr7:37509276-37509295 MsG0780037975.01.T01:CDS 30.0%
!!! AGATTTTGATTGGTTTGATG+AGG - Chr7:37509350-37509369 MsG0780037975.01.T01:CDS 30.0%
!!! GGTTTTAGTTTTGAAAGCTA+AGG + Chr7:37508540-37508559 None:intergenic 30.0%
!!! GGTTTTGATTTGGTTAGTTT+TGG - Chr7:37509490-37509509 MsG0780037975.01.T01:CDS 30.0%
!!! GTTTGATGATGATGACTTTT+TGG + Chr7:37508649-37508668 None:intergenic 30.0%
!!! TGGATACTTGATTTTGAAGT+GGG + Chr7:37508388-37508407 None:intergenic 30.0%
AAGTTGGATGAGGTTCAAAA+GGG - Chr7:37509205-37509224 MsG0780037975.01.T01:CDS 35.0%
GAATTGCTTAGTATTCATCC+GGG - Chr7:37509640-37509659 MsG0780037975.01.T01:CDS 35.0%
GGAATGTGAATTTGTCTAAG+AGG - Chr7:37509227-37509246 MsG0780037975.01.T01:CDS 35.0%
GGAATTGCTTAGTATTCATC+CGG - Chr7:37509639-37509658 MsG0780037975.01.T01:CDS 35.0%
GGCGTTGTTTATTCGAAAAA+AGG - Chr7:37509418-37509437 MsG0780037975.01.T01:CDS 35.0%
GTTTGTTTAGGGATGTTTCA+GGG - Chr7:37509469-37509488 MsG0780037975.01.T01:CDS 35.0%
TAAGGTAGTTATTCAATCGC+AGG - Chr7:37509999-37510018 MsG0780037975.01.T01:CDS 35.0%
TGAAACATTTCGGAGATTTG+AGG + Chr7:37508509-37508528 None:intergenic 35.0%
TGTTTGTTTAGGGATGTTTC+AGG - Chr7:37509468-37509487 MsG0780037975.01.T01:CDS 35.0%
TTGGTCGGTTATGATTTCTT+CGG + Chr7:37508630-37508649 None:intergenic 35.0%
! AGAGTAAGTTGAGAACACTA+GGG - Chr7:37509116-37509135 MsG0780037975.01.T01:CDS 35.0%
! GAGTGTTAGGGTTTTTGAAT+CGG - Chr7:37509288-37509307 MsG0780037975.01.T01:CDS 35.0%
! TGATTTGGATCAGAATGAAG+CGG - Chr7:37509738-37509757 MsG0780037975.01.T01:CDS 35.0%
! TGTTCTATGAGGCATTTGTT+GGG - Chr7:37509788-37509807 MsG0780037975.01.T01:CDS 35.0%
! TTGTTCTATGAGGCATTTGT+TGG - Chr7:37509787-37509806 MsG0780037975.01.T01:CDS 35.0%
! TTTTCAGATGAGGAAGAAGT+TGG - Chr7:37509189-37509208 MsG0780037975.01.T01:CDS 35.0%
! TTTTCCATTTGGGTCTTCAT+TGG - Chr7:37509072-37509091 MsG0780037975.01.T01:CDS 35.0%
!! AATTGGTTTGAGGTAAACGA+CGG + Chr7:37508767-37508786 None:intergenic 35.0%
!! ACCTTACCAATTCTAAAACC+GGG + Chr7:37509985-37510004 None:intergenic 35.0%
!! ATGATGAGGTTTTTCAGATG+AGG - Chr7:37509179-37509198 MsG0780037975.01.T01:CDS 35.0%
!! GATGATGATGACTTTTTGGT+CGG + Chr7:37508645-37508664 None:intergenic 35.0%
!! GGCGAATTTCTGAAACATTT+CGG + Chr7:37508519-37508538 None:intergenic 35.0%
!! GTGATGTTTTGTTGAGTGTT+AGG - Chr7:37509275-37509294 MsG0780037975.01.T01:CDS 35.0%
!! GTGGATACTTGATTTTGAAG+TGG + Chr7:37508389-37508408 None:intergenic 35.0%
!! TTGAATCGGTTTTGCATGAT+GGG - Chr7:37509302-37509321 MsG0780037975.01.T01:CDS 35.0%
!! TTTGAATCGGTTTTGCATGA+TGG - Chr7:37509301-37509320 MsG0780037975.01.T01:CDS 35.0%
!! TTTTTCGAATAAACAACGCC+CGG + Chr7:37509418-37509437 None:intergenic 35.0%
!!! GATGTTTCAGGGTTTTGATT+TGG - Chr7:37509480-37509499 MsG0780037975.01.T01:CDS 35.0%
!!! GGTTAGTTTTGGATTGAGTT+CGG - Chr7:37509501-37509520 MsG0780037975.01.T01:CDS 35.0%
!!! GTCGTCGATTTTCATTGATT+TGG - Chr7:37509723-37509742 MsG0780037975.01.T01:CDS 35.0%
!!! GTTTTTCCCGGTTTTAGAAT+TGG - Chr7:37509976-37509995 MsG0780037975.01.T01:CDS 35.0%
!!! TGTTTTGTTTGGAGATTCCA+AGG + Chr7:37508441-37508460 None:intergenic 35.0%
AAAATCGACGACTCCATTGA+AGG + Chr7:37509715-37509734 None:intergenic 40.0%
ACATGGATGATGTGACAAAG+AGG - Chr7:37509911-37509930 MsG0780037975.01.T01:CDS 40.0%
AGTTGGATGAGGTTCAAAAG+GGG - Chr7:37509206-37509225 MsG0780037975.01.T01:CDS 40.0%
ATGTGACAAAGAGGTTAACC+TGG - Chr7:37509920-37509939 MsG0780037975.01.T01:CDS 40.0%
CACATCATCCATGTATACCA+TGG + Chr7:37509905-37509924 None:intergenic 40.0%
GAAGTTGGATGAGGTTCAAA+AGG - Chr7:37509204-37509223 MsG0780037975.01.T01:CDS 40.0%
GATTGCGTTTGTGTAAACGA+CGG + Chr7:37508845-37508864 None:intergenic 40.0%
GGAATTCTCCATGGTATACA+TGG - Chr7:37509894-37509913 MsG0780037975.01.T01:CDS 40.0%
TTCGTCGTTGAAGAATTCGA+AGG + Chr7:37508561-37508580 None:intergenic 40.0%
TTCTATAAAAGGGACGTGTG+CGG + Chr7:37508957-37508976 None:intergenic 40.0%
TTGTTTGGAGATTCCAAGGA+TGG + Chr7:37508437-37508456 None:intergenic 40.0%
TTTGTGAGATGAAGTACGAG+AGG - Chr7:37509680-37509699 MsG0780037975.01.T01:CDS 40.0%
! CAGAGTAAGTTGAGAACACT+AGG - Chr7:37509115-37509134 MsG0780037975.01.T01:CDS 40.0%
! GAGATCTTTCAAGTGGAAAG+AGG - Chr7:37509868-37509887 MsG0780037975.01.T01:CDS 40.0%
! GCTTGAAAAGAAGCATGATG+AGG - Chr7:37509165-37509184 MsG0780037975.01.T01:CDS 40.0%
! GTCGTTGAGTTTGTTCTATG+AGG - Chr7:37509777-37509796 MsG0780037975.01.T01:CDS 40.0%
! TGTCTAAGAGGCTTTGTAGT+GGG - Chr7:37509239-37509258 MsG0780037975.01.T01:CDS 40.0%
! TTGTCTAAGAGGCTTTGTAG+TGG - Chr7:37509238-37509257 MsG0780037975.01.T01:CDS 40.0%
!! ATTGGTTTGATGAGGAAAGC+GGG - Chr7:37509358-37509377 MsG0780037975.01.T01:CDS 40.0%
!! CAATTGCAATCGATTCGACA+CGG + Chr7:37509143-37509162 None:intergenic 40.0%
!! GATTGGTTTGATGAGGAAAG+CGG - Chr7:37509357-37509376 MsG0780037975.01.T01:CDS 40.0%
!! TTTGCATGATGGGTTTAGAG+CGG - Chr7:37509312-37509331 MsG0780037975.01.T01:CDS 40.0%
!!! TCCCGGTTTTAGAATTGGTA+AGG - Chr7:37509981-37510000 MsG0780037975.01.T01:CDS 40.0%
AAAAACCATCGGATTCGTCG+AGG + Chr7:37508592-37508611 None:intergenic 45.0%
AACCTCGAAAACTCACAACC+CGG + Chr7:37509661-37509680 None:intergenic 45.0%
AATAAGGGAAGGGCAAAGGT+CGG - Chr7:37509946-37509965 MsG0780037975.01.T01:CDS 45.0%
ACCTTTGCCCTTCCCTTATT+CGG + Chr7:37509946-37509965 None:intergenic 45.0%
AGGTTAACCTGGCCGAATAA+GGG - Chr7:37509931-37509950 MsG0780037975.01.T01:CDS 45.0%
CGTGTCGAATCGATTGCAAT+TGG - Chr7:37509141-37509160 MsG0780037975.01.T01:CDS 45.0%
GAGGCTTATCCATCCTTCAA+TGG - Chr7:37509699-37509718 MsG0780037975.01.T01:CDS 45.0%
GATGAGGAAGAAGTTGGATG+AGG - Chr7:37509195-37509214 MsG0780037975.01.T01:CDS 45.0%
GCATGTGTCTAGTAATCCGA+TGG - Chr7:37509618-37509637 MsG0780037975.01.T01:CDS 45.0%
GCTTCCAATGAAGACCCAAA+TGG + Chr7:37509079-37509098 None:intergenic 45.0%
GTCGAGGAGAGAAAAACCAT+CGG + Chr7:37508603-37508622 None:intergenic 45.0%
GTCGGTTATGATTTCTTCGG+TGG + Chr7:37508627-37508646 None:intergenic 45.0%
GTCTTCATTGGAAGCTGAAG+TGG - Chr7:37509084-37509103 MsG0780037975.01.T01:CDS 45.0%
TTTGCTTCCAGATCCATCCT+TGG - Chr7:37508421-37508440 MsG0780037975.01.T01:CDS 45.0%
! ATGAAGCGGTGTTGAATTCG+TGG - Chr7:37509752-37509771 MsG0780037975.01.T01:CDS 45.0%
! CTATGAGGCATTTGTTGGGA+TGG - Chr7:37509792-37509811 MsG0780037975.01.T01:CDS 45.0%
! CTTTCAAGTGGAAAGAGGTG+CGG - Chr7:37509873-37509892 MsG0780037975.01.T01:CDS 45.0%
! TCGTTTCGGGTAGTGCTAAT+TGG + Chr7:37508784-37508803 None:intergenic 45.0%
! TTGGTTTGATGAGGAAAGCG+GGG - Chr7:37509359-37509378 MsG0780037975.01.T01:CDS 45.0%
! TTTAGGTTTAGCGGCGAATG+CGG - Chr7:37509387-37509406 MsG0780037975.01.T01:CDS 45.0%
!! GGGTAGTGCTAATTGGTTTG+AGG + Chr7:37508777-37508796 None:intergenic 45.0%
!!! AAGATGGTGTCGTTTTGGGA+GGG + Chr7:37508703-37508722 None:intergenic 45.0%
!!! GAAGAAGACGGTGTCGTTTT+GGG + Chr7:37508680-37508699 None:intergenic 45.0%
!!! GGTGAAGATGGTGTCGTTTT+GGG + Chr7:37508707-37508726 None:intergenic 45.0%
!!! TGTAAACGACGGTGTCGTTT+TGG + Chr7:37508834-37508853 None:intergenic 45.0%
AACAACCTCGACGAATCCGA+TGG - Chr7:37508584-37508603 MsG0780037975.01.T01:CDS 50.0%
AACCTGGCCGAATAAGGGAA+GGG - Chr7:37509936-37509955 MsG0780037975.01.T01:CDS 50.0%
ACTTGAAAGATCTCCACCGC+AGG + Chr7:37509862-37509881 None:intergenic 50.0%
AGATCGAACGACGTCGTTTC+GGG + Chr7:37508797-37508816 None:intergenic 50.0%
ATAAGGGAAGGGCAAAGGTC+GGG - Chr7:37509947-37509966 MsG0780037975.01.T01:CDS 50.0%
CGAAGCTTCGAAAGCCGAAA+CGG + Chr7:37508918-37508937 None:intergenic 50.0%
GAGATCGAACGACGTCGTTT+CGG + Chr7:37508798-37508817 None:intergenic 50.0%
GAGGTTAACCTGGCCGAATA+AGG - Chr7:37509930-37509949 MsG0780037975.01.T01:CDS 50.0%
GGACGTGTGCGGTTTGTAAT+TGG + Chr7:37508946-37508965 None:intergenic 50.0%
GGAGATTCCAAGGATGGATC+TGG + Chr7:37508431-37508450 None:intergenic 50.0%
GTCACATGCCTTTGATCCTG+CGG - Chr7:37509843-37509862 MsG0780037975.01.T01:CDS 50.0%
TAACCTGGCCGAATAAGGGA+AGG - Chr7:37509935-37509954 MsG0780037975.01.T01:CDS 50.0%
TAGATCGTGCGACGTCGTTT+CGG + Chr7:37508876-37508895 None:intergenic 50.0%
TCGACGACTCCATTGAAGGA+TGG + Chr7:37509711-37509730 None:intergenic 50.0%
TGATTTCTTCGGTGGAGTCG+AGG + Chr7:37508619-37508638 None:intergenic 50.0%
TGCGGTGGAGATCTTTCAAG+TGG - Chr7:37509861-37509880 MsG0780037975.01.T01:CDS 50.0%
TTTGATGAGGAAAGCGGGGT+GGG - Chr7:37509363-37509382 MsG0780037975.01.T01:CDS 50.0%
! AAGAGGTGCGGAATTCTCCA+TGG - Chr7:37509885-37509904 MsG0780037975.01.T01:CDS 50.0%
! AAGCGGTGTTGAATTCGTGG+AGG - Chr7:37509755-37509774 MsG0780037975.01.T01:CDS 50.0%
! ATCCGGGTTGTGAGTTTTCG+AGG - Chr7:37509656-37509675 MsG0780037975.01.T01:CDS 50.0%
! GGGGTGGGATTTAGGTTTAG+CGG - Chr7:37509378-37509397 MsG0780037975.01.T01:CDS 50.0%
! TTGGGATGGCTAGCTCGATA+TGG - Chr7:37509806-37509825 MsG0780037975.01.T01:CDS 50.0%
!! GTCGGGTTCACTGTTTTTCC+CGG - Chr7:37509964-37509983 MsG0780037975.01.T01:CDS 50.0%
!!! AACGACGGTGTCGTTTTGGT+TGG + Chr7:37508752-37508771 None:intergenic 50.0%
!!! ACGACGGTGTCGTTTTGGTT+GGG + Chr7:37508751-37508770 None:intergenic 50.0%
!!! AGATGGTGTCGTTTTGGGAG+GGG + Chr7:37508702-37508721 None:intergenic 50.0%
!!! GAAGAGGAGGGTGTCGTTTT+GGG + Chr7:37508728-37508747 None:intergenic 50.0%
!!! GAAGATGGTGTCGTTTTGGG+AGG + Chr7:37508704-37508723 None:intergenic 50.0%
!!! GGAAGAAGACGGTGTCGTTT+TGG + Chr7:37508681-37508700 None:intergenic 50.0%
!!! GGGTGAAGATGGTGTCGTTT+TGG + Chr7:37508708-37508727 None:intergenic 50.0%
!!! GGTAAACGACGGTGTCGTTT+TGG + Chr7:37508756-37508775 None:intergenic 50.0%
!!! GGTGTCGTTTTGGGTGAAGA+TGG + Chr7:37508719-37508738 None:intergenic 50.0%
!!! GTTTTGGGAGGGGAAGAAGA+CGG + Chr7:37508692-37508711 None:intergenic 50.0%
!!! GTTTTGGTTGGGGAAGAGGA+GGG + Chr7:37508740-37508759 None:intergenic 50.0%
!!! TGTCGTTTTGGTTGGCGTGT+CGG + Chr7:37508822-37508841 None:intergenic 50.0%
!!! TGTCGTTTTGGTTGGGGAAG+AGG + Chr7:37508744-37508763 None:intergenic 50.0%
ACATGCCTTTGATCCTGCGG+TGG - Chr7:37509846-37509865 MsG0780037975.01.T01:CDS 55.0%
AGATCGTGCGACGTCGTTTC+GGG + Chr7:37508875-37508894 None:intergenic 55.0%
AGCTTCGAAAGCCGAAACGG+CGG + Chr7:37508915-37508934 None:intergenic 55.0%
AGGAAAGCGGGGTGGGATTT+AGG - Chr7:37509370-37509389 MsG0780037975.01.T01:CDS 55.0%
ATCGATCTTCGCCGCCGTTT+CGG - Chr7:37508901-37508920 MsG0780037975.01.T01:CDS 55.0%
GATCTCCACCGCAGGATCAA+AGG + Chr7:37509854-37509873 None:intergenic 55.0%
GCCGAATAAGGGAAGGGCAA+AGG - Chr7:37509942-37509961 MsG0780037975.01.T01:CDS 55.0%
GTTTGATGAGGAAAGCGGGG+TGG - Chr7:37509362-37509381 MsG0780037975.01.T01:CDS 55.0%
!!! CGACGGTGTCGTTTTGGTTG+GGG + Chr7:37508750-37508769 None:intergenic 55.0%
!!! CGGTGTCGTTTTGGGTGGAT+CGG + Chr7:37508672-37508691 None:intergenic 55.0%
!!! CGTTTTGGTTGGGGAAGAGG+AGG + Chr7:37508741-37508760 None:intergenic 55.0%
!!! GAAGACGGTGTCGTTTTGGG+TGG + Chr7:37508677-37508696 None:intergenic 55.0%
!!! GGAAGAGGAGGGTGTCGTTT+TGG + Chr7:37508729-37508748 None:intergenic 55.0%
!!! GGTGTCGTTTTGGGTGGATC+GGG + Chr7:37508671-37508690 None:intergenic 55.0%
AGCGGCGAATGCGGTTCATC+CGG - Chr7:37509396-37509415 MsG0780037975.01.T01:CDS 60.0%
TGCCCTTCCCTTATTCGGCC+AGG + Chr7:37509941-37509960 None:intergenic 60.0%
! TGCGACGTCGTTTCGGGTAG+TGG + Chr7:37508869-37508888 None:intergenic 60.0%
GCGGCGAATGCGGTTCATCC+GGG - Chr7:37509397-37509416 MsG0780037975.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 37508344 37510053 37508344 ID=MsG0780037975.01;Name=MsG0780037975.01
Chr7 mRNA 37508344 37510053 37508344 ID=MsG0780037975.01.T01;Parent=MsG0780037975.01;Name=MsG0780037975.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|569
Chr7 exon 37508344 37510053 37508344 ID=MsG0780037975.01.T01:exon:10242;Parent=MsG0780037975.01.T01
Chr7 CDS 37508344 37510053 37508344 ID=MsG0780037975.01.T01:cds;Parent=MsG0780037975.01.T01
Gene Sequence

>MsG0780037975.01.T01

ATGGTCTTCCTTCTAAGACATTCAAAGAACATTAGCAGAATCCCACTTCAAAATCAAGTATCCACTTTCTCTCTAATTTTGCTTCCAGATCCATCCTTGGAATCTCCAAACAAAACAAAACTAAACATGCAAGAAATCTATCCCAACAACAATAACAAACAACCTCAAATCTCCGAAATGTTTCAGAAATTCGCCTTAGCTTTCAAAACTAAAACCTTCGAATTCTTCAACGACGAAGAAAACAACCTCGACGAATCCGATGGTTTTTCTCTCCTCGACTCCACCGAAGAAATCATAACCGACCAAAAAGTCATCATCATCAAACCCGATCCACCCAAAACGACACCGTCTTCTTCCCCTCCCAAAACGACACCATCTTCACCCAAAACGACACCCTCCTCTTCCCCAACCAAAACGACACCGTCGTTTACCTCAAACCAATTAGCACTACCCGAAACGACGTCGTTCGATCTCACCGACACGCCAACCAAAACGACACCGTCGTTTACACAAACGCAATCACCACTACCCGAAACGACGTCGCACGATCTAATCTCATCGATCTTCGCCGCCGTTTCGGCTTTCGAAGCTTCGTATTTCCAATTACAAACCGCACACGTCCCTTTTATAGAAGAAAACGTGAAAACCACTGATAAAGTGCTTATTTCACATCTTCAGAGATTATCTGAATTCAAGAAATTTTACTGTAACCCTAATTTGTACACAACTTTTCCATTTGGGTCTTCATTGGAAGCTGAAGTGGAAGAGAATCAGAGTAAGTTGAGAACACTAGGGACCGTGTCGAATCGATTGCAATTGGAGCTTGAAAAGAAGCATGATGAGGTTTTTCAGATGAGGAAGAAGTTGGATGAGGTTCAAAAGGGGAATGTGAATTTGTCTAAGAGGCTTTGTAGTGGGAATGTTAATAGTTGTGATGTTTTGTTGAGTGTTAGGGTTTTTGAATCGGTTTTGCATGATGGGTTTAGAGCGGCGCATAAGTTTACGAAGATTTTGATTGGTTTGATGAGGAAAGCGGGGTGGGATTTAGGTTTAGCGGCGAATGCGGTTCATCCGGGCGTTGTTTATTCGAAAAAAGGGCATAATCAGTATGCGCTTTTGTCGTATGTTTGTTTAGGGATGTTTCAGGGTTTTGATTTGGTTAGTTTTGGATTGAGTTCGGAGAGAAGAGACGAAGAAGAATTGATGATGTCAAATGGTGAGTTTTTTGATTTAGATTTGAAAGGGAGAGATAGTTGTTTGAAGCAATTGTTGGAGCATGTGTCTAGTAATCCGATGGAATTGCTTAGTATTCATCCGGGTTGTGAGTTTTCGAGGTTTTGTGAGATGAAGTACGAGAGGCTTATCCATCCTTCAATGGAGTCGTCGATTTTCATTGATTTGGATCAGAATGAAGCGGTGTTGAATTCGTGGAGGTCGTTGAGTTTGTTCTATGAGGCATTTGTTGGGATGGCTAGCTCGATATGGACACTGCATAAGTTGTCACATGCCTTTGATCCTGCGGTGGAGATCTTTCAAGTGGAAAGAGGTGCGGAATTCTCCATGGTATACATGGATGATGTGACAAAGAGGTTAACCTGGCCGAATAAGGGAAGGGCAAAGGTCGGGTTCACTGTTTTTCCCGGTTTTAGAATTGGTAAGGTAGTTATTCAATCGCAGGTTTATGTAAGTAGTTTCTGTTTGGAAGAGTAG

Protein sequence

>MsG0780037975.01.T01

MVFLLRHSKNISRIPLQNQVSTFSLILLPDPSLESPNKTKLNMQEIYPNNNNKQPQISEMFQKFALAFKTKTFEFFNDEENNLDESDGFSLLDSTEEIITDQKVIIIKPDPPKTTPSSSPPKTTPSSPKTTPSSSPTKTTPSFTSNQLALPETTSFDLTDTPTKTTPSFTQTQSPLPETTSHDLISSIFAAVSAFEASYFQLQTAHVPFIEENVKTTDKVLISHLQRLSEFKKFYCNPNLYTTFPFGSSLEAEVEENQSKLRTLGTVSNRLQLELEKKHDEVFQMRKKLDEVQKGNVNLSKRLCSGNVNSCDVLLSVRVFESVLHDGFRAAHKFTKILIGLMRKAGWDLGLAANAVHPGVVYSKKGHNQYALLSYVCLGMFQGFDLVSFGLSSERRDEEELMMSNGEFFDLDLKGRDSCLKQLLEHVSSNPMELLSIHPGCEFSRFCEMKYERLIHPSMESSIFIDLDQNEAVLNSWRSLSLFYEAFVGMASSIWTLHKLSHAFDPAVEIFQVERGAEFSMVYMDDVTKRLTWPNKGRAKVGFTVFPGFRIGKVVIQSQVYVSSFCLEE*