Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004506.01.T01 | KEH43039.1 | 97.015 | 201 | 6 | 0 | 1 | 201 | 323 | 523 | 3.81E-138 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004506.01.T01 | Q9CAV6 | 40.404 | 198 | 84 | 7 | 1 | 191 | 437 | 607 | 2.53E-28 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004506.01.T01 | A0A072VM06 | 97.015 | 201 | 6 | 0 | 1 | 201 | 323 | 523 | 1.82e-138 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048302.01 | MsG0180004506.01 | -0.820135 | 8.050077e-53 | 6.316920e-50 |
| MsG0080048692.01 | MsG0180004506.01 | 0.836484 | 9.106079e-57 | 1.149129e-53 |
| MsG0080049076.01 | MsG0180004506.01 | 0.808383 | 3.181373e-50 | 1.816500e-47 |
| MsG0180003898.01 | MsG0180004506.01 | -0.822270 | 2.590760e-53 | 2.158149e-50 |
| MsG0180004505.01 | MsG0180004506.01 | 0.877244 | 7.343599e-69 | 3.666850e-65 |
| MsG0180004506.01 | MsG0180004507.01 | 0.863656 | 2.130069e-64 | 6.507521e-61 |
| MsG0180004506.01 | MsG0180005817.01 | 0.803136 | 4.026719e-49 | 2.007810e-46 |
| MsG0180004506.01 | MsG0280006475.01 | 0.814794 | 1.284726e-51 | 8.703561e-49 |
| MsG0180004506.01 | MsG0280010695.01 | 0.829983 | 3.791985e-55 | 3.943136e-52 |
| MsG0180004506.01 | MsG0380013926.01 | 0.821609 | 3.686756e-53 | 3.013659e-50 |
| MsG0180004506.01 | MsG0380013940.01 | 0.827263 | 1.722870e-54 | 1.654926e-51 |
| MsG0180004506.01 | MsG0380013941.01 | 0.821198 | 4.587372e-53 | 3.707520e-50 |
| MsG0180004506.01 | MsG0380013943.01 | 0.824416 | 8.170125e-54 | 7.231584e-51 |
| MsG0180004506.01 | MsG0380013945.01 | 0.827054 | 1.933590e-54 | 1.845794e-51 |
| MsG0180004506.01 | MsG0380013951.01 | 0.822758 | 1.995905e-53 | 1.685950e-50 |
| MsG0180004506.01 | MsG0380013953.01 | 0.819554 | 1.092853e-52 | 8.437026e-50 |
| MsG0180004506.01 | MsG0380013957.01 | 0.805431 | 1.339211e-49 | 7.083870e-47 |
| MsG0180004506.01 | MsG0380013966.01 | 0.820537 | 6.507833e-53 | 5.163504e-50 |
| MsG0180004506.01 | MsG0380013967.01 | 0.807983 | 3.871325e-50 | 2.187116e-47 |
| MsG0180004506.01 | MsG0380013968.01 | 0.821094 | 4.846374e-53 | 3.905453e-50 |
| MsG0180004506.01 | MsG0380013977.01 | 0.805370 | 1.379536e-49 | 7.285638e-47 |
| MsG0180004506.01 | MsG0380014005.01 | 0.815660 | 8.248145e-52 | 5.721628e-49 |
| MsG0180004506.01 | MsG0380014006.01 | 0.807171 | 5.758504e-50 | 3.185172e-47 |
| MsG0180004506.01 | MsG0380014023.01 | 0.801740 | 7.807128e-49 | 3.756813e-46 |
| MsG0180004506.01 | MsG0380014026.01 | 0.835329 | 1.787427e-56 | 2.178907e-53 |
| MsG0180004506.01 | MsG0380014032.01 | 0.822758 | 1.995905e-53 | 1.685950e-50 |
| MsG0180004506.01 | MsG0380014033.01 | 0.831982 | 1.225585e-55 | 1.351674e-52 |
| MsG0180004506.01 | MsG0380015217.01 | -0.832368 | 9.840544e-56 | 1.097589e-52 |
| MsG0180004506.01 | MsG0380016964.01 | -0.803039 | 4.217047e-49 | 2.097507e-46 |
| MsG0180004506.01 | MsG0480019975.01 | 0.806593 | 7.630120e-50 | 4.157682e-47 |
| MsG0180004506.01 | MsG0480021054.01 | 0.819317 | 1.237510e-52 | 9.490053e-50 |
| MsG0180004506.01 | MsG0480021476.01 | 0.831121 | 1.997785e-55 | 2.147526e-52 |
| MsG0180004506.01 | MsG0480021912.01 | 0.833674 | 4.657597e-56 | 5.401468e-53 |
| MsG0180004506.01 | MsG0580024570.01 | 0.801090 | 1.060770e-48 | 5.021954e-46 |
| MsG0180004506.01 | MsG0880042832.01 | -0.808340 | 3.250526e-50 | 1.853839e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004506.01.T01 | MTR_1g081330 | 97.015 | 201 | 6 | 0 | 1 | 201 | 323 | 523 | 4.62e-142 | 412 |
| MsG0180004506.01.T01 | MTR_1g081330 | 97.015 | 201 | 6 | 0 | 1 | 201 | 408 | 608 | 3.34e-141 | 412 |
| MsG0180004506.01.T01 | MTR_7g114680 | 61.951 | 205 | 69 | 6 | 1 | 201 | 392 | 591 | 6.17e-69 | 224 |
| MsG0180004506.01.T01 | MTR_7g114680 | 61.951 | 205 | 69 | 6 | 1 | 201 | 406 | 605 | 8.07e-69 | 224 |
| MsG0180004506.01.T01 | MTR_1g103850 | 48.507 | 134 | 58 | 4 | 1 | 128 | 401 | 529 | 6.38e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004506.01.T01 | AT3G04910 | 40.513 | 195 | 88 | 6 | 1 | 191 | 311 | 481 | 2.42e-29 | 114 |
| MsG0180004506.01.T01 | AT3G04910 | 40.404 | 198 | 84 | 7 | 1 | 191 | 437 | 607 | 2.58e-29 | 115 |
| MsG0180004506.01.T01 | AT3G04910 | 40.404 | 198 | 84 | 7 | 1 | 191 | 414 | 584 | 2.82e-29 | 115 |
| MsG0180004506.01.T01 | AT5G28080 | 47.368 | 95 | 27 | 4 | 1 | 95 | 218 | 289 | 1.33e-15 | 74.3 |
| MsG0180004506.01.T01 | AT5G28080 | 46.316 | 95 | 28 | 3 | 1 | 95 | 411 | 482 | 3.32e-15 | 74.3 |
| MsG0180004506.01.T01 | AT5G28080 | 47.368 | 95 | 27 | 4 | 1 | 95 | 374 | 445 | 3.76e-15 | 73.9 |
| MsG0180004506.01.T01 | AT5G28080 | 46.316 | 95 | 28 | 3 | 1 | 95 | 325 | 396 | 3.86e-15 | 73.9 |
| MsG0180004506.01.T01 | AT5G28080 | 46.316 | 95 | 28 | 3 | 1 | 95 | 325 | 396 | 3.86e-15 | 73.9 |
| MsG0180004506.01.T01 | AT5G28080 | 46.316 | 95 | 28 | 3 | 1 | 95 | 325 | 396 | 3.86e-15 | 73.9 |
| MsG0180004506.01.T01 | AT5G28080 | 46.316 | 95 | 28 | 3 | 1 | 95 | 325 | 396 | 3.86e-15 | 73.9 |
| MsG0180004506.01.T01 | AT5G28080 | 46.316 | 95 | 28 | 3 | 1 | 95 | 325 | 396 | 3.86e-15 | 73.9 |
| MsG0180004506.01.T01 | AT3G22420 | 37.838 | 111 | 53 | 4 | 1 | 101 | 459 | 563 | 1.28e-11 | 63.9 |
| MsG0180004506.01.T01 | AT3G22420 | 38.532 | 109 | 51 | 4 | 1 | 99 | 388 | 490 | 1.30e-11 | 63.5 |
| MsG0180004506.01.T01 | AT3G22420 | 38.532 | 109 | 51 | 4 | 1 | 99 | 415 | 517 | 1.48e-11 | 63.5 |
| MsG0180004506.01.T01 | AT3G22420 | 37.838 | 111 | 53 | 4 | 1 | 101 | 486 | 590 | 1.50e-11 | 63.5 |
| MsG0180004506.01.T01 | AT3G22420 | 37.838 | 111 | 53 | 4 | 1 | 101 | 420 | 524 | 1.56e-11 | 63.5 |
| MsG0180004506.01.T01 | AT3G22420 | 37.838 | 111 | 53 | 4 | 1 | 101 | 447 | 551 | 1.80e-11 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGATGGCTTGCAGTATC+TGG | 0.187825 | 1:+78964765 | MsG0180004506.01.T01:CDS |
| CCTGGTCCAGATTGCCATTC+AGG | 0.193121 | 1:-78964511 | None:intergenic |
| ACAATATAACGAACGGATAT+TGG | 0.236366 | 1:-78964980 | None:intergenic |
| TGAGCCATCTCAGTTCCTTT+TGG | 0.244728 | 1:-78965033 | None:intergenic |
| GAAACCTTGGTTTGCAAAAC+GGG | 0.314429 | 1:-78964548 | None:intergenic |
| GCTTGCAGTATCTGGGACTA+TGG | 0.321875 | 1:+78964773 | MsG0180004506.01.T01:CDS |
| CTTGGAGAAATTATTGCATT+GGG | 0.337257 | 1:-78964931 | None:intergenic |
| CAAGATACCTAATGGAGTTA+AGG | 0.348247 | 1:+78965059 | MsG0180004506.01.T01:CDS |
| ATCTATCATATCTGCTATAC+TGG | 0.356085 | 1:-78964467 | None:intergenic |
| AGTATAGCAGATATGATAGA+TGG | 0.364083 | 1:+78964469 | MsG0180004506.01.T01:CDS |
| CGGGGAGTTTCAACGATTCC+TGG | 0.395128 | 1:-78964529 | None:intergenic |
| TTGGTACCTGAATGGCAATC+TGG | 0.396124 | 1:+78964505 | MsG0180004506.01.T01:CDS |
| AGATGGGGAAATTGCTTCCT+TGG | 0.396509 | 1:+78964486 | MsG0180004506.01.T01:CDS |
| TAAGCTCCCTTAACTCCATT+AGG | 0.407120 | 1:-78965066 | None:intergenic |
| ACATCCGTGCTTACAACATT+CGG | 0.407136 | 1:-78964653 | None:intergenic |
| AGAAACCTTGGTTTGCAAAA+CGG | 0.416271 | 1:-78964549 | None:intergenic |
| AATGGAGTTAAGGGAGCTTA+AGG | 0.421765 | 1:+78965069 | MsG0180004506.01.T01:CDS |
| AAGATACCTAATGGAGTTAA+GGG | 0.431152 | 1:+78965060 | MsG0180004506.01.T01:CDS |
| TGAGTTCCTGATGAATATCT+TGG | 0.433692 | 1:-78964949 | None:intergenic |
| TCTTGGAGAAATTATTGCAT+TGG | 0.442905 | 1:-78964932 | None:intergenic |
| CACAATTGCGGCAGAAACCT+TGG | 0.446587 | 1:-78964561 | None:intergenic |
| TCGTTATATTGTGGTCTTGA+CGG | 0.454758 | 1:+78964991 | MsG0180004506.01.T01:CDS |
| TACTTCAAGCGGCTCCCTCA+TGG | 0.471063 | 1:+78964594 | MsG0180004506.01.T01:CDS |
| GCTCAAAGCAAGATACCTAA+TGG | 0.474760 | 1:+78965051 | MsG0180004506.01.T01:CDS |
| CATCCGTGCTTACAACATTC+GGG | 0.476240 | 1:-78964652 | None:intergenic |
| CTCAACGCATGGCCGGTTTG+AGG | 0.483258 | 1:+78964678 | MsG0180004506.01.T01:CDS |
| AGAACTTGACATTACAGATC+AGG | 0.492936 | 1:+78964438 | MsG0180004506.01.T01:CDS |
| TTGCTTCCTTGGTACCTGAA+TGG | 0.493141 | 1:+78964497 | MsG0180004506.01.T01:CDS |
| ATTTCTCCAAGATATTCATC+AGG | 0.493324 | 1:+78964943 | MsG0180004506.01.T01:CDS |
| AATATCCGTTCGTTATATTG+TGG | 0.497595 | 1:+78964982 | MsG0180004506.01.T01:CDS |
| GATTGTCATACTCCTCAGAT+TGG | 0.497822 | 1:-78964711 | None:intergenic |
| TACAACATTCGGGAAGTTGA+AGG | 0.499709 | 1:-78964642 | None:intergenic |
| GGAAAGTAATCTCCTCAAAC+CGG | 0.502762 | 1:-78964690 | None:intergenic |
| GCAGATGGCTTGCAGTATCT+GGG | 0.518389 | 1:+78964766 | MsG0180004506.01.T01:CDS |
| CCTGAATGGCAATCTGGACC+AGG | 0.529106 | 1:+78964511 | MsG0180004506.01.T01:CDS |
| GTATAGCAGATATGATAGAT+GGG | 0.540214 | 1:+78964470 | MsG0180004506.01.T01:CDS |
| ACTCTACCGGACTCAATTCA+CGG | 0.543079 | 1:-78964810 | None:intergenic |
| GATGTGCCTCAACGCATGGC+CGG | 0.553569 | 1:+78964671 | MsG0180004506.01.T01:CDS |
| TGAAAGCCGTGAATTGAGTC+CGG | 0.554731 | 1:+78964804 | MsG0180004506.01.T01:CDS |
| CACGGATGTGCCTCAACGCA+TGG | 0.557513 | 1:+78964667 | MsG0180004506.01.T01:CDS |
| GGAGATTACTTTCCAATCTG+AGG | 0.559269 | 1:+78964699 | MsG0180004506.01.T01:CDS |
| GATTATGAAAGAGATCCAAA+AGG | 0.561580 | 1:+78965018 | MsG0180004506.01.T01:CDS |
| GGAGAAATTATTGCATTGGG+GGG | 0.567381 | 1:-78964928 | None:intergenic |
| TCAATATCAGCTGAAGGTCA+AGG | 0.570181 | 1:+78964880 | MsG0180004506.01.T01:CDS |
| CTCAAACCGGCCATGCGTTG+AGG | 0.583835 | 1:-78964677 | None:intergenic |
| TTGGAGAAATTATTGCATTG+GGG | 0.587307 | 1:-78964930 | None:intergenic |
| GATAAATCAATATCAGCTGA+AGG | 0.593699 | 1:+78964874 | MsG0180004506.01.T01:CDS |
| AACATAGCAAACATAGCAGA+TGG | 0.594997 | 1:+78964751 | MsG0180004506.01.T01:CDS |
| CTTTGATCATCAGACTCTAC+CGG | 0.597960 | 1:-78964823 | None:intergenic |
| TGGAGAAATTATTGCATTGG+GGG | 0.599277 | 1:-78964929 | None:intergenic |
| CTTCCCGAATGTTGTAAGCA+CGG | 0.607538 | 1:+78964649 | MsG0180004506.01.T01:CDS |
| AGATCCAAAAGGAACTGAGA+TGG | 0.607734 | 1:+78965029 | MsG0180004506.01.T01:CDS |
| GTGTCGAATCATACTTCAAG+CGG | 0.623010 | 1:+78964583 | MsG0180004506.01.T01:CDS |
| AAACCTTGGTTTGCAAAACG+GGG | 0.633543 | 1:-78964547 | None:intergenic |
| CAAGACCACAATATAACGAA+CGG | 0.656535 | 1:-78964987 | None:intergenic |
| GTGTGAAAGAAAATCCATGA+GGG | 0.671483 | 1:-78964608 | None:intergenic |
| TATAGCAGATATGATAGATG+GGG | 0.676482 | 1:+78964471 | MsG0180004506.01.T01:CDS |
| TATGATTCGACACACAATTG+CGG | 0.677561 | 1:-78964573 | None:intergenic |
| AGATTGCCATTCAGGTACCA+AGG | 0.677879 | 1:-78964503 | None:intergenic |
| TGTGTGAAAGAAAATCCATG+AGG | 0.767840 | 1:-78964609 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGATACCTAATGGAGTTAA+GGG | + | Chr1:78965060-78965079 | MsG0180004506.01.T01:CDS | 30.0% | |
| AATATCCGTTCGTTATATTG+TGG | + | Chr1:78964982-78965001 | MsG0180004506.01.T01:CDS | 30.0% | |
| ACAATATAACGAACGGATAT+TGG | - | Chr1:78964983-78965002 | None:intergenic | 30.0% | |
| AGTATAGCAGATATGATAGA+TGG | + | Chr1:78964469-78964488 | MsG0180004506.01.T01:CDS | 30.0% | |
| ATCTATCATATCTGCTATAC+TGG | - | Chr1:78964470-78964489 | None:intergenic | 30.0% | |
| ATTTCTCCAAGATATTCATC+AGG | + | Chr1:78964943-78964962 | MsG0180004506.01.T01:CDS | 30.0% | |
| CTTGGAGAAATTATTGCATT+GGG | - | Chr1:78964934-78964953 | None:intergenic | 30.0% | |
| GATAAATCAATATCAGCTGA+AGG | + | Chr1:78964874-78964893 | MsG0180004506.01.T01:CDS | 30.0% | |
| GATTATGAAAGAGATCCAAA+AGG | + | Chr1:78965018-78965037 | MsG0180004506.01.T01:CDS | 30.0% | |
| GTATAGCAGATATGATAGAT+GGG | + | Chr1:78964470-78964489 | MsG0180004506.01.T01:CDS | 30.0% | |
| TATAGCAGATATGATAGATG+GGG | + | Chr1:78964471-78964490 | MsG0180004506.01.T01:CDS | 30.0% | |
| TCTTGGAGAAATTATTGCAT+TGG | - | Chr1:78964935-78964954 | None:intergenic | 30.0% | |
| TTGGAGAAATTATTGCATTG+GGG | - | Chr1:78964933-78964952 | None:intergenic | 30.0% | |
| ! | GATTTTCTTTCACACAATCA+GGG | + | Chr1:78964616-78964635 | MsG0180004506.01.T01:CDS | 30.0% |
| AACATAGCAAACATAGCAGA+TGG | + | Chr1:78964751-78964770 | MsG0180004506.01.T01:CDS | 35.0% | |
| AGAACTTGACATTACAGATC+AGG | + | Chr1:78964438-78964457 | MsG0180004506.01.T01:CDS | 35.0% | |
| CAAGACCACAATATAACGAA+CGG | - | Chr1:78964990-78965009 | None:intergenic | 35.0% | |
| CAAGATACCTAATGGAGTTA+AGG | + | Chr1:78965059-78965078 | MsG0180004506.01.T01:CDS | 35.0% | |
| GTGTGAAAGAAAATCCATGA+GGG | - | Chr1:78964611-78964630 | None:intergenic | 35.0% | |
| TATGATTCGACACACAATTG+CGG | - | Chr1:78964576-78964595 | None:intergenic | 35.0% | |
| TGAGTTCCTGATGAATATCT+TGG | - | Chr1:78964952-78964971 | None:intergenic | 35.0% | |
| TGGAGAAATTATTGCATTGG+GGG | - | Chr1:78964932-78964951 | None:intergenic | 35.0% | |
| TGTGTGAAAGAAAATCCATG+AGG | - | Chr1:78964612-78964631 | None:intergenic | 35.0% | |
| ! | GGATTTTCTTTCACACAATC+AGG | + | Chr1:78964615-78964634 | MsG0180004506.01.T01:CDS | 35.0% |
| ! | TCGTTATATTGTGGTCTTGA+CGG | + | Chr1:78964991-78965010 | MsG0180004506.01.T01:CDS | 35.0% |
| !! | AGAAACCTTGGTTTGCAAAA+CGG | - | Chr1:78964552-78964571 | None:intergenic | 35.0% |
| ACATCCGTGCTTACAACATT+CGG | - | Chr1:78964656-78964675 | None:intergenic | 40.0% | |
| AGATCCAAAAGGAACTGAGA+TGG | + | Chr1:78965029-78965048 | MsG0180004506.01.T01:CDS | 40.0% | |
| CTTTGATCATCAGACTCTAC+CGG | - | Chr1:78964826-78964845 | None:intergenic | 40.0% | |
| GATTGTCATACTCCTCAGAT+TGG | - | Chr1:78964714-78964733 | None:intergenic | 40.0% | |
| GCTCAAAGCAAGATACCTAA+TGG | + | Chr1:78965051-78965070 | MsG0180004506.01.T01:CDS | 40.0% | |
| GGAAAGTAATCTCCTCAAAC+CGG | - | Chr1:78964693-78964712 | None:intergenic | 40.0% | |
| GGAGAAATTATTGCATTGGG+GGG | - | Chr1:78964931-78964950 | None:intergenic | 40.0% | |
| GGAGATTACTTTCCAATCTG+AGG | + | Chr1:78964699-78964718 | MsG0180004506.01.T01:CDS | 40.0% | |
| GTGTCGAATCATACTTCAAG+CGG | + | Chr1:78964583-78964602 | MsG0180004506.01.T01:CDS | 40.0% | |
| TAAGCTCCCTTAACTCCATT+AGG | - | Chr1:78965069-78965088 | None:intergenic | 40.0% | |
| TACAACATTCGGGAAGTTGA+AGG | - | Chr1:78964645-78964664 | None:intergenic | 40.0% | |
| TCAATATCAGCTGAAGGTCA+AGG | + | Chr1:78964880-78964899 | MsG0180004506.01.T01:CDS | 40.0% | |
| !! | AAACCTTGGTTTGCAAAACG+GGG | - | Chr1:78964550-78964569 | None:intergenic | 40.0% |
| !! | GAAACCTTGGTTTGCAAAAC+GGG | - | Chr1:78964551-78964570 | None:intergenic | 40.0% |
| ACTCTACCGGACTCAATTCA+CGG | - | Chr1:78964813-78964832 | None:intergenic | 45.0% | |
| AGATGGGGAAATTGCTTCCT+TGG | + | Chr1:78964486-78964505 | MsG0180004506.01.T01:CDS | 45.0% | |
| AGATTGCCATTCAGGTACCA+AGG | - | Chr1:78964506-78964525 | None:intergenic | 45.0% | |
| CATCCGTGCTTACAACATTC+GGG | - | Chr1:78964655-78964674 | None:intergenic | 45.0% | |
| CTTCCCGAATGTTGTAAGCA+CGG | + | Chr1:78964649-78964668 | MsG0180004506.01.T01:CDS | 45.0% | |
| TGAAAGCCGTGAATTGAGTC+CGG | + | Chr1:78964804-78964823 | MsG0180004506.01.T01:CDS | 45.0% | |
| TTGCTTCCTTGGTACCTGAA+TGG | + | Chr1:78964497-78964516 | MsG0180004506.01.T01:CDS | 45.0% | |
| TTGGTACCTGAATGGCAATC+TGG | + | Chr1:78964505-78964524 | MsG0180004506.01.T01:CDS | 45.0% | |
| ! | TGAGCCATCTCAGTTCCTTT+TGG | - | Chr1:78965036-78965055 | None:intergenic | 45.0% |
| CACAATTGCGGCAGAAACCT+TGG | - | Chr1:78964564-78964583 | None:intergenic | 50.0% | |
| ! | ACTCCCCGTTTTGCAAACCA+AGG | + | Chr1:78964544-78964563 | MsG0180004506.01.T01:CDS | 50.0% |
| ! | AGCAGATGGCTTGCAGTATC+TGG | + | Chr1:78964765-78964784 | MsG0180004506.01.T01:CDS | 50.0% |
| ! | GCAGATGGCTTGCAGTATCT+GGG | + | Chr1:78964766-78964785 | MsG0180004506.01.T01:CDS | 50.0% |
| ! | GCTTGCAGTATCTGGGACTA+TGG | + | Chr1:78964773-78964792 | MsG0180004506.01.T01:CDS | 50.0% |
| CCTGAATGGCAATCTGGACC+AGG | + | Chr1:78964511-78964530 | MsG0180004506.01.T01:CDS | 55.0% | |
| CCTGGTCCAGATTGCCATTC+AGG | - | Chr1:78964514-78964533 | None:intergenic | 55.0% | |
| CGGGGAGTTTCAACGATTCC+TGG | - | Chr1:78964532-78964551 | None:intergenic | 55.0% | |
| TACTTCAAGCGGCTCCCTCA+TGG | + | Chr1:78964594-78964613 | MsG0180004506.01.T01:CDS | 55.0% | |
| CACGGATGTGCCTCAACGCA+TGG | + | Chr1:78964667-78964686 | MsG0180004506.01.T01:CDS | 60.0% | |
| CTCAAACCGGCCATGCGTTG+AGG | - | Chr1:78964680-78964699 | None:intergenic | 60.0% | |
| GATGTGCCTCAACGCATGGC+CGG | + | Chr1:78964671-78964690 | MsG0180004506.01.T01:CDS | 60.0% | |
| !! | CTCAACGCATGGCCGGTTTG+AGG | + | Chr1:78964678-78964697 | MsG0180004506.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78964430 | 78965089 | 78964430 | ID=MsG0180004506.01;Name=MsG0180004506.01 |
| Chr1 | mRNA | 78964430 | 78965089 | 78964430 | ID=MsG0180004506.01.T01;Parent=MsG0180004506.01;Name=MsG0180004506.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|219 |
| Chr1 | exon | 78964430 | 78965089 | 78964430 | ID=MsG0180004506.01.T01:exon:15260;Parent=MsG0180004506.01.T01 |
| Chr1 | CDS | 78964430 | 78965089 | 78964430 | ID=MsG0180004506.01.T01:cds;Parent=MsG0180004506.01.T01 |
| Gene Sequence |
| Protein sequence |
