AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014005.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014005.01.T01 MTR_0002s0420 97.727 220 5 0 64 283 99 318 8.73e-151 441
MsG0380014005.01.T01 MTR_4g073360 95.477 199 9 0 64 262 81 279 4.32e-136 387
MsG0380014005.01.T01 MTR_5g094930 98.485 66 1 0 148 213 30 95 6.64e-42 140
MsG0380014005.01.T01 MTR_7g021750 37.561 205 125 3 63 264 98 302 7.23e-41 145
MsG0380014005.01.T01 MTR_0002s0380 37.561 205 125 3 63 264 98 302 7.95e-41 145
MsG0380014005.01.T01 MTR_4g051290 37.561 205 125 3 63 264 98 302 8.93e-41 144
MsG0380014005.01.T01 MTR_4g051130 96.774 62 2 0 1 62 253 314 1.96e-34 132
MsG0380014005.01.T01 MTR_0002s0510 86.154 65 9 0 1 65 318 382 1.72e-32 127
MsG0380014005.01.T01 MTR_6g077905 100.000 37 0 0 247 283 1 37 5.90e-18 77.0
MsG0380014005.01.T01 MTR_3g008370 85.294 34 5 0 235 268 120 153 2.30e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014005.01.T01 ATCG00270 98.182 220 4 0 64 283 99 318 3.58e-157 442
MsG0380014005.01.T01 ATCG00020 37.561 205 125 3 63 264 98 302 8.69e-41 145
MsG0380014005.01.T01 ATCG00190 82.258 62 11 0 1 62 266 327 9.43e-29 115

Find 62 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGTAACCAACGTTTAT+TGG 0.152838 3:-48634453 None:intergenic
TTGTACCAGTAACTGGTTTA+TGG 0.157376 3:+48634486 MsG0380014005.01.T01:CDS
CATTTGATTAGAATGAAATT+TGG 0.194260 3:+48631156 MsG0380014005.01.T01:CDS
GATCTATTACAAGATCAATT+TGG 0.270369 3:+48631237 MsG0380014005.01.T01:CDS
CTTCATTTAAGAGAATATTT+TGG 0.288291 3:-48634615 None:intergenic
GAGAATGCGATTGCATTATA+AGG 0.300314 3:-48634086 None:intergenic
ATGTTATTTGTACCAGTAAC+TGG 0.301254 3:+48634479 MsG0380014005.01.T01:CDS
GTGTAGAAAGTCTCAAATTC+AGG 0.306012 3:-48634593 None:intergenic
GTTGCTCTCCACGGTGCTTT+CGG 0.314958 3:+48634008 MsG0380014005.01.T01:CDS
CACGGTGCTTTCGGATTAAT+CGG 0.315441 3:+48634017 MsG0380014005.01.T01:CDS
TGGTCACCGCTAACCGCTTT+TGG 0.334374 3:+48634405 MsG0380014005.01.T01:CDS
AGTCATAGGCACGTAGGTTC+AGG 0.343093 3:-48634538 None:intergenic
ATGGGAGTTGCTGGTGTATT+GGG 0.376096 3:+48634263 MsG0380014005.01.T01:CDS
GCAACTCCCATCATATGAAA+TGG 0.378299 3:-48634251 None:intergenic
AAAAGCAACCCCAAAGATTT+GGG 0.380424 3:-48634429 None:intergenic
GCCCTACTATGCGCTATTCA+TGG 0.397868 3:+48634290 MsG0380014005.01.T01:CDS
TGGTTCTTTGCGCCTAGTTT+TGG 0.399423 3:+48634167 MsG0380014005.01.T01:CDS
TTTCATATGATGGGAGTTGC+TGG 0.401398 3:+48634254 MsG0380014005.01.T01:CDS
CTCATCCATAAACCAGTTAC+TGG 0.402670 3:-48634491 None:intergenic
ATTAAACCCATTTCATATGA+TGG 0.404659 3:+48634244 MsG0380014005.01.T01:CDS
GTATATCAATGTTCAGTCTT+CGG 0.430453 3:-48631083 None:intergenic
ATTTATCCACTAGGTCAGTC+TGG 0.438674 3:+48634143 MsG0380014005.01.T01:CDS
GATGGGAGTTGCTGGTGTAT+TGG 0.444635 3:+48634262 MsG0380014005.01.T01:CDS
ACCACCCAATTGACACCAAC+GGG 0.447715 3:-48633973 None:intergenic
CACCATGAATAGCGCATAGT+AGG 0.451041 3:-48634292 None:intergenic
TTTACCCGTTGGTGTCAATT+GGG 0.451297 3:+48633969 MsG0380014005.01.T01:CDS
GATTAGAATGAAATTTGGAA+TGG 0.458348 3:+48631161 MsG0380014005.01.T01:CDS
TGCTCTTGGAGTAGTCGGTC+TGG 0.463627 3:+48634514 MsG0380014005.01.T01:CDS
GAAAATACGTTATTTGAAGA+TGG 0.467422 3:+48634323 MsG0380014005.01.T01:CDS
TAAGTTTCTTCCGCTTGAGT+TGG 0.470351 3:-48634377 None:intergenic
ATTAGAATGAAATTTGGAAT+GGG 0.470927 3:+48631162 MsG0380014005.01.T01:CDS
AAGTTTCTTCCGCTTGAGTT+GGG 0.471818 3:-48634376 None:intergenic
AGAATGCGATTGCATTATAA+GGG 0.476455 3:-48634085 None:intergenic
ATGTCCAATTATGAAACCCT+TGG 0.480474 3:-48634223 None:intergenic
ACTGACCTAGTGGATAAATC+AGG 0.486322 3:-48634139 None:intergenic
GGTTTATGGATGAGTGCTCT+TGG 0.487258 3:+48634500 MsG0380014005.01.T01:CDS
ATCCACTAGGTCAGTCTGGT+TGG 0.491601 3:+48634147 MsG0380014005.01.T01:CDS
TATAATGCAATCGCATTCTC+CGG 0.499878 3:+48634089 MsG0380014005.01.T01:CDS
CAACTCCCATCATATGAAAT+GGG 0.501015 3:-48634250 None:intergenic
AGCGGAAGAAACTTATTCAA+TGG 0.507359 3:+48634385 MsG0380014005.01.T01:CDS
ATCTTGTAATAGATCTGCTA+TGG 0.510106 3:-48631229 None:intergenic
TTAAACCCATTTCATATGAT+GGG 0.515998 3:+48634245 MsG0380014005.01.T01:CDS
GTCATAGGCACGTAGGTTCA+GGG 0.529864 3:-48634537 None:intergenic
TTCTTGAGAAACGAAGTCAT+AGG 0.550484 3:-48634552 None:intergenic
ACCATGAATAGCGCATAGTA+GGG 0.553237 3:-48634291 None:intergenic
ACCCGTTGGTGTCAATTGGG+TGG 0.554774 3:+48633972 MsG0380014005.01.T01:CDS
CAAAGATTTGGGACCAAAAG+CGG 0.565258 3:-48634418 None:intergenic
GTATTCCTGATTTATCCACT+AGG 0.576834 3:+48634134 MsG0380014005.01.T01:CDS
CTTGAGTTGGGTTAAAAGCA+CGG 0.578060 3:-48634364 None:intergenic
ATGAGTGCTCTTGGAGTAGT+CGG 0.580287 3:+48634509 MsG0380014005.01.T01:CDS
ATAGTTGCTACACCAAAACT+AGG 0.581325 3:-48634179 None:intergenic
ACGTTATTTGAAGATGGTGA+TGG 0.581496 3:+48634329 MsG0380014005.01.T01:CDS
TTGGGACCAAAAGCGGTTAG+CGG 0.581850 3:-48634411 None:intergenic
GACCACCCAATTGACACCAA+CGG 0.589862 3:-48633974 None:intergenic
AACCAACCAGACTGACCTAG+TGG 0.633960 3:-48634149 None:intergenic
ATTCAGGATCTTCCGCTGCG+CGG 0.636480 3:-48634577 None:intergenic
GGTGTCAATTGGGTGGTCTG+TGG 0.641395 3:+48633979 MsG0380014005.01.T01:CDS
TTCTCAAGAAATCCGCGCAG+CGG 0.657698 3:+48634565 MsG0380014005.01.T01:CDS
CGATTAATCCGAAAGCACCG+TGG 0.662103 3:-48634016 None:intergenic
GCGAGATATATTGACAGCTG+CGG 0.702124 3:+48631131 MsG0380014005.01.T01:CDS
GCAGCTGTCAATATATCTCG+CGG 0.702925 3:-48631129 None:intergenic
AAACGAAGTCATAGGCACGT+AGG 0.708108 3:-48634544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATTTATTTGATATTA+TGG + Chr3:48633704-48633723 MsG0380014005.01.T01:intron 10.0%
!! TTTAATATTATTTGATGAAT+AGG + Chr3:48633271-48633290 MsG0380014005.01.T01:intron 10.0%
!!! ATAGTTAAAAAAATGATTTT+TGG - Chr3:48631947-48631966 None:intergenic 10.0%
!!! TTATAGTTTTGTTTTATAAT+TGG - Chr3:48631685-48631704 None:intergenic 10.0%
!! GTAAAATACAAAGTAAAAAT+AGG + Chr3:48633156-48633175 MsG0380014005.01.T01:intron 15.0%
!! TAAAATCCATTAACTTAATT+GGG - Chr3:48633470-48633489 None:intergenic 15.0%
!! TAGATATGAAAATGAAATAT+TGG - Chr3:48632911-48632930 None:intergenic 15.0%
!!! AAAAAATGATTTTTGGATAT+TGG - Chr3:48631940-48631959 None:intergenic 15.0%
!!! AAATAAATCATTTTCATCTT+TGG - Chr3:48633697-48633716 None:intergenic 15.0%
!!! TAGATTTTTAAAGCAATTAA+TGG + Chr3:48632938-48632957 MsG0380014005.01.T01:intron 15.0%
!!! TCAGATTTTTTAATATTGTA+TGG - Chr3:48633004-48633023 None:intergenic 15.0%
!!! TTTTGAAAGTAAAATTATGT+TGG - Chr3:48632775-48632794 None:intergenic 15.0%
!!! TTTTGAAATTGTCAATATAA+TGG + Chr3:48631583-48631602 MsG0380014005.01.T01:intron 15.0%
!! AAAGAAAAATACAACTAAAG+AGG + Chr3:48633115-48633134 MsG0380014005.01.T01:intron 20.0%
!! CATTTGATTAGAATGAAATT+TGG + Chr3:48631156-48631175 MsG0380014005.01.T01:CDS 20.0%
!! CTATTATTCCAATCAAAAAA+AGG + Chr3:48632513-48632532 MsG0380014005.01.T01:intron 20.0%
!! CTCTTTGTAAAAAAAAACTA+AGG + Chr3:48632311-48632330 MsG0380014005.01.T01:intron 20.0%
!! GTAAAATCCATTAACTTAAT+TGG - Chr3:48633471-48633490 None:intergenic 20.0%
!! TAACAAAAATGTATTGTTCT+CGG - Chr3:48631109-48631128 None:intergenic 20.0%
!! TAGGAATATCTTACAATTAA+AGG - Chr3:48632484-48632503 None:intergenic 20.0%
!! TGATTGGAATAATAGAAAAT+AGG - Chr3:48632508-48632527 None:intergenic 20.0%
!! TTACCTAGATTAAATATCAA+TGG + Chr3:48633487-48633506 MsG0380014005.01.T01:intron 20.0%
!! TTGGATTTGATAAATATCAA+TGG - Chr3:48631921-48631940 None:intergenic 20.0%
!! TTTGATAAATATCAATGGAA+TGG - Chr3:48631916-48631935 None:intergenic 20.0%
!!! AGATTCTAAAAAAAAGTAAG+TGG + Chr3:48632538-48632557 MsG0380014005.01.T01:intron 20.0%
!!! ATTAGAATGAAATTTGGAAT+GGG + Chr3:48631162-48631181 MsG0380014005.01.T01:CDS 20.0%
!!! ATTTGATCTTTTCTTGTATT+CGG - Chr3:48632808-48632827 None:intergenic 20.0%
!!! CGAAATCTAAATGATATTTT+AGG - Chr3:48631644-48631663 None:intergenic 20.0%
!!! CTTTTTAACGAACAATAAAT+TGG - Chr3:48631985-48632004 None:intergenic 20.0%
!!! TTCAAATAACGTATTTTCTA+CGG - Chr3:48634321-48634340 None:intergenic 20.0%
!!! TTTGTTTTATAATTGGTGAT+TGG - Chr3:48631678-48631697 None:intergenic 20.0%
!!! TTTTTAATATCTCTTTCGTT+CGG + Chr3:48632646-48632665 MsG0380014005.01.T01:intron 20.0%
! AACAAAAATGTATTGTTCTC+GGG - Chr3:48631108-48631127 None:intergenic 25.0%
! AAGATGATTTCAATTCGAAT+CGG + Chr3:48631878-48631897 MsG0380014005.01.T01:intron 25.0%
! ATTAAACCCATTTCATATGA+TGG + Chr3:48634244-48634263 MsG0380014005.01.T01:CDS 25.0%
! CAATTTGAATATCAGAATAG+TGG - Chr3:48632591-48632610 None:intergenic 25.0%
! CACTATTCTGATATTCAAAT+TGG + Chr3:48632589-48632608 MsG0380014005.01.T01:intron 25.0%
! GAAAATACGTTATTTGAAGA+TGG + Chr3:48634323-48634342 MsG0380014005.01.T01:CDS 25.0%
! GAATAACCCAATTAAGTTAA+TGG + Chr3:48633461-48633480 MsG0380014005.01.T01:intron 25.0%
! GACAATTAAATTGCAGTAAA+CGG + Chr3:48631378-48631397 MsG0380014005.01.T01:intron 25.0%
! GATCTATTACAAGATCAATT+TGG + Chr3:48631237-48631256 MsG0380014005.01.T01:CDS 25.0%
! GATTAAATCTTATTGTTCCT+AGG + Chr3:48632696-48632715 MsG0380014005.01.T01:intron 25.0%
! GATTAGAATGAAATTTGGAA+TGG + Chr3:48631161-48631180 MsG0380014005.01.T01:CDS 25.0%
! GGAATAATAGAAAATAGGAT+AGG - Chr3:48632503-48632522 None:intergenic 25.0%
! GGATATAGTTATGATTCAAT+AGG - Chr3:48632570-48632589 None:intergenic 25.0%
! GTTAAGAAGATTGAATTAGT+GGG + Chr3:48631819-48631838 MsG0380014005.01.T01:intron 25.0%
! TAAAATGAAAAAATCCTCGA+AGG + Chr3:48633581-48633600 MsG0380014005.01.T01:intron 25.0%
! TACTAAACTCATATCCATAT+TGG + Chr3:48632072-48632091 MsG0380014005.01.T01:intron 25.0%
! TAGTTATGATTCAATAGGTT+AGG - Chr3:48632565-48632584 None:intergenic 25.0%
! TATGTATGAACATAGTAGAA+TGG - Chr3:48631551-48631570 None:intergenic 25.0%
! TATTTGATATTATGGATGAC+TGG + Chr3:48633712-48633731 MsG0380014005.01.T01:intron 25.0%
! TGTCCATTGATATTTAATCT+AGG - Chr3:48633493-48633512 None:intergenic 25.0%
! TGTTAAGAAGATTGAATTAG+TGG + Chr3:48631818-48631837 MsG0380014005.01.T01:intron 25.0%
! TTAAACCCATTTCATATGAT+GGG + Chr3:48634245-48634264 MsG0380014005.01.T01:CDS 25.0%
!! TTCTTCTAATTTGTATGTCT+AGG - Chr3:48633197-48633216 None:intergenic 25.0%
!!! GAATCTTTCCTTTTTTTGAT+TGG - Chr3:48632524-48632543 None:intergenic 25.0%
!!! GATTCATTCTATTTTTCCAA+GGG + Chr3:48634207-48634226 MsG0380014005.01.T01:CDS 25.0%
!!! GGGAATTTTTTAGAATAGAA+AGG + Chr3:48633439-48633458 MsG0380014005.01.T01:intron 25.0%
AAACTCATATCCATATTGGA+TGG + Chr3:48632076-48632095 MsG0380014005.01.T01:intron 30.0%
AAATAAGTATAGCATTCCAG+GGG - Chr3:48631285-48631304 None:intergenic 30.0%
AATGATATGATTCGATCAGA+AGG + Chr3:48631606-48631625 MsG0380014005.01.T01:intron 30.0%
AATGGTTGAAGTAGTTGAAT+AGG + Chr3:48633637-48633656 MsG0380014005.01.T01:intron 30.0%
ACAGAAACAAAAACAGCAAT+TGG - Chr3:48634116-48634135 None:intergenic 30.0%
AGAATGCGATTGCATTATAA+GGG - Chr3:48634088-48634107 None:intergenic 30.0%
AGTATACCATGAAGTTACAA+AGG - Chr3:48633830-48633849 None:intergenic 30.0%
ATATTGGATGGTTCCTTATT+CGG + Chr3:48632088-48632107 MsG0380014005.01.T01:intron 30.0%
ATCAATCATATTCCCTGAAA+AGG - Chr3:48631746-48631765 None:intergenic 30.0%
ATCTTGTAATAGATCTGCTA+TGG - Chr3:48631232-48631251 None:intergenic 30.0%
CAAATAAGTATAGCATTCCA+GGG - Chr3:48631286-48631305 None:intergenic 30.0%
GAAATATTGACAGATTCTTG+CGG - Chr3:48632675-48632694 None:intergenic 30.0%
GAAATGTAACCAACGTTTAT+TGG - Chr3:48634456-48634475 None:intergenic 30.0%
GAATGAAAGTGAAAGAAATG+AGG - Chr3:48631796-48631815 None:intergenic 30.0%
GCAAGAATCTGTCAATATTT+CGG + Chr3:48632674-48632693 MsG0380014005.01.T01:intron 30.0%
GTATATCAATGTTCAGTCTT+CGG - Chr3:48631086-48631105 None:intergenic 30.0%
TCTCTATTCTTCCTTCAAAT+CGG - Chr3:48632266-48632285 None:intergenic 30.0%
! ACAGTAATATTCCGATTTGA+AGG + Chr3:48632252-48632271 MsG0380014005.01.T01:intron 30.0%
! ATATTATGGATGACTGGTTA+CGG + Chr3:48633718-48633737 MsG0380014005.01.T01:intron 30.0%
! ATGTTATTTGTACCAGTAAC+TGG + Chr3:48634479-48634498 MsG0380014005.01.T01:CDS 30.0%
! ATTCCTTTTCTCAGATACAT+GGG + Chr3:48631401-48631420 MsG0380014005.01.T01:intron 30.0%
! TTTTCCAAGGGTTTCATAAT+TGG + Chr3:48634219-48634238 MsG0380014005.01.T01:CDS 30.0%
!! ACACTCTTTGTTGTTACTAT+GGG + Chr3:48633926-48633945 MsG0380014005.01.T01:intron 30.0%
!! AGGGAATATGATTGATTTTC+CGG + Chr3:48631750-48631769 MsG0380014005.01.T01:intron 30.0%
!! CGATTCATTCTATTTTTCCA+AGG + Chr3:48634206-48634225 MsG0380014005.01.T01:CDS 30.0%
!!! TTGCTTTTTCCAATAAACGT+TGG + Chr3:48634444-48634463 MsG0380014005.01.T01:CDS 30.0%
AAAAAGCAACCCCAAAGATT+TGG - Chr3:48634433-48634452 None:intergenic 35.0%
AAAAGCAACCCCAAAGATTT+GGG - Chr3:48634432-48634451 None:intergenic 35.0%
AAAAGTAACTATTGTACCCC+TGG + Chr3:48631266-48631285 MsG0380014005.01.T01:intron 35.0%
AAACCCATGTATCTGAGAAA+AGG - Chr3:48631407-48631426 None:intergenic 35.0%
AACAAAAACAGCAATTGGAC+CGG - Chr3:48634111-48634130 None:intergenic 35.0%
AAGGTTGTAACTTCTTACTG+CGG + Chr3:48633875-48633894 MsG0380014005.01.T01:intron 35.0%
AATAGGAGAGTAGTATGTCT+GGG + Chr3:48633288-48633307 MsG0380014005.01.T01:intron 35.0%
ACCAACCCACAAAAACAAAA+CGG - Chr3:48633749-48633768 None:intergenic 35.0%
ACGTTATTTGAAGATGGTGA+TGG + Chr3:48634329-48634348 MsG0380014005.01.T01:CDS 35.0%
AGCGGAAGAAACTTATTCAA+TGG + Chr3:48634385-48634404 MsG0380014005.01.T01:CDS 35.0%
ATACCATGAAGTTACAAAGG+TGG - Chr3:48633827-48633846 None:intergenic 35.0%
ATAGTTGCTACACCAAAACT+AGG - Chr3:48634182-48634201 None:intergenic 35.0%
ATCACTATGACTATAGCTCT+TGG + Chr3:48633663-48633682 MsG0380014005.01.T01:intron 35.0%
ATGTCCAATTATGAAACCCT+TGG - Chr3:48634226-48634245 None:intergenic 35.0%
CAACTCCCATCATATGAAAT+GGG - Chr3:48634253-48634272 None:intergenic 35.0%
CCAAATAAGTATAGCATTCC+AGG - Chr3:48631287-48631306 None:intergenic 35.0%
CCATAAATATCCATTGCAAG+AGG - Chr3:48631359-48631378 None:intergenic 35.0%
CCTCTTGCAATGGATATTTA+TGG + Chr3:48631356-48631375 MsG0380014005.01.T01:intron 35.0%
CCTGGAATGCTATACTTATT+TGG + Chr3:48631284-48631303 MsG0380014005.01.T01:intron 35.0%
CTTAACGACGATATGAGTAA+AGG - Chr3:48631448-48631467 None:intergenic 35.0%
CTTTACTCATATCGTCGTTA+AGG + Chr3:48631446-48631465 MsG0380014005.01.T01:intron 35.0%
GAAGTTACAACCTTCCAAAT+AGG - Chr3:48633869-48633888 None:intergenic 35.0%
GAATAAGGAACCATCCAATA+TGG - Chr3:48632089-48632108 None:intergenic 35.0%
GAGAATGCGATTGCATTATA+AGG - Chr3:48634089-48634108 None:intergenic 35.0%
GCGATCATTTCATTTGTTTC+TGG + Chr3:48633342-48633361 MsG0380014005.01.T01:intron 35.0%
GTAACTTCATGGTATACTCA+TGG + Chr3:48633832-48633851 MsG0380014005.01.T01:intron 35.0%
GTATGAACATAGTAGAATGG+AGG - Chr3:48631548-48631567 None:intergenic 35.0%
GTATTCCTGATTTATCCACT+AGG + Chr3:48634134-48634153 MsG0380014005.01.T01:CDS 35.0%
GTGTAGAAAGTCTCAAATTC+AGG - Chr3:48634596-48634615 None:intergenic 35.0%
TACTCGAAGTCATGATTTGA+TGG - Chr3:48632887-48632906 None:intergenic 35.0%
TACTCTACCACTGAGTTAAA+GGG - Chr3:48632133-48632152 None:intergenic 35.0%
TAGAAATGAACTTCGAACAG+TGG + Chr3:48632613-48632632 MsG0380014005.01.T01:intron 35.0%
TATAATGCAATCGCATTCTC+CGG + Chr3:48634089-48634108 MsG0380014005.01.T01:CDS 35.0%
TATTGGATGGTTCCTTATTC+GGG + Chr3:48632089-48632108 MsG0380014005.01.T01:intron 35.0%
TGTTTATCTACCTCTTGCAA+TGG + Chr3:48631346-48631365 MsG0380014005.01.T01:intron 35.0%
TTACTCTACCACTGAGTTAA+AGG - Chr3:48632134-48632153 None:intergenic 35.0%
TTCATGGTATACTCATGGAT+TGG + Chr3:48633837-48633856 MsG0380014005.01.T01:intron 35.0%
TTCTTGAGAAACGAAGTCAT+AGG - Chr3:48634555-48634574 None:intergenic 35.0%
TTTGACAAAAAGCCCCTTAT+CGG - Chr3:48632190-48632209 None:intergenic 35.0%
TTTGAGTCAATTCCCGAATA+AGG - Chr3:48632104-48632123 None:intergenic 35.0%
! AGAAAGAGAGAATCCTTTTC+AGG + Chr3:48631730-48631749 MsG0380014005.01.T01:intron 35.0%
! GAAAGAGAGAATCCTTTTCA+GGG + Chr3:48631731-48631750 MsG0380014005.01.T01:intron 35.0%
! GATTCCTTTTCTCAGATACA+TGG + Chr3:48631400-48631419 MsG0380014005.01.T01:intron 35.0%
! TATTCGGGAATTGACTCAAA+TGG + Chr3:48632104-48632123 MsG0380014005.01.T01:intron 35.0%
! TTCTCAGATACATGGGTTTT+TGG + Chr3:48631408-48631427 MsG0380014005.01.T01:intron 35.0%
! TTGTACCAGTAACTGGTTTA+TGG + Chr3:48634486-48634505 MsG0380014005.01.T01:CDS 35.0%
! TTTAGGACATCTCTCTTTCA+AGG - Chr3:48631495-48631514 None:intergenic 35.0%
!! AGGAGTATCAATTCATTCCT+AGG - Chr3:48632716-48632735 None:intergenic 35.0%
!! ATGATTGATTTTCCGGTAAC+AGG + Chr3:48631757-48631776 MsG0380014005.01.T01:intron 35.0%
!! CACACTCTTTGTTGTTACTA+TGG + Chr3:48633925-48633944 MsG0380014005.01.T01:intron 35.0%
!! CACTCTTTGTTGTTACTATG+GGG + Chr3:48633927-48633946 MsG0380014005.01.T01:intron 35.0%
!!! TATACCTTTTTTGCAGATCG+AGG - Chr3:48633070-48633089 None:intergenic 35.0%
AAGTTTCTTCCGCTTGAGTT+GGG - Chr3:48634379-48634398 None:intergenic 40.0%
ACCATGAATAGCGCATAGTA+GGG - Chr3:48634294-48634313 None:intergenic 40.0%
ACTCTACCACTGAGTTAAAG+GGG - Chr3:48632132-48632151 None:intergenic 40.0%
ATAGAATAAACCCTTCTGCG+TGG - Chr3:48632744-48632763 None:intergenic 40.0%
ATAGGAGAGTAGTATGTCTG+GGG + Chr3:48633289-48633308 MsG0380014005.01.T01:intron 40.0%
ATTTATCCACTAGGTCAGTC+TGG + Chr3:48634143-48634162 MsG0380014005.01.T01:CDS 40.0%
CGTCATGACTTCATGACTTA+GGG + Chr3:48633419-48633438 MsG0380014005.01.T01:intron 40.0%
CTCATCCATAAACCAGTTAC+TGG - Chr3:48634494-48634513 None:intergenic 40.0%
CTTACCTCGATCTGCAAAAA+AGG + Chr3:48633063-48633082 MsG0380014005.01.T01:intron 40.0%
GAACATAGTAGAATGGAGGT+CGG - Chr3:48631544-48631563 None:intergenic 40.0%
GAATAGGAGAGTAGTATGTC+TGG + Chr3:48633287-48633306 MsG0380014005.01.T01:intron 40.0%
GAGTGTGCTAAACTATTAGC+AGG - Chr3:48633912-48633931 None:intergenic 40.0%
GCAACTCCCATCATATGAAA+TGG - Chr3:48634254-48634273 None:intergenic 40.0%
GGTTGAAGTAGTTGAATAGG+AGG + Chr3:48633640-48633659 MsG0380014005.01.T01:intron 40.0%
GTACCACCTTTGTAACTTCA+TGG + Chr3:48633821-48633840 MsG0380014005.01.T01:intron 40.0%
TAAGTCATGAAGTCATGACG+CGG - Chr3:48633419-48633438 None:intergenic 40.0%
TAAGTTTCTTCCGCTTGAGT+TGG - Chr3:48634380-48634399 None:intergenic 40.0%
TCGAAACCCAGTAGAAAAGA+AGG + Chr3:48633531-48633550 MsG0380014005.01.T01:intron 40.0%
TTCCATCCCTGAAAATGCTA+GGG + Chr3:48633604-48633623 MsG0380014005.01.T01:intron 40.0%
TTGGCAAGTTCCTATTTGGA+AGG + Chr3:48633856-48633875 MsG0380014005.01.T01:intron 40.0%
! ACTGACCTAGTGGATAAATC+AGG - Chr3:48634142-48634161 None:intergenic 40.0%
! AGACTGTCCTTCTTTTCTAC+TGG - Chr3:48633541-48633560 None:intergenic 40.0%
! ATCGGTTCAAATCCGATAAG+GGG + Chr3:48632175-48632194 MsG0380014005.01.T01:intron 40.0%
! CAAAGATTTGGGACCAAAAG+CGG - Chr3:48634421-48634440 None:intergenic 40.0%
! CTTTTGGTCCCAAATCTTTG+GGG + Chr3:48634421-48634440 MsG0380014005.01.T01:CDS 40.0%
! GACTGTCCTTCTTTTCTACT+GGG - Chr3:48633540-48633559 None:intergenic 40.0%
! GCTTTTGGTCCCAAATCTTT+GGG + Chr3:48634420-48634439 MsG0380014005.01.T01:CDS 40.0%
! TGCTTTTAACCCAACTCAAG+CGG + Chr3:48634367-48634386 MsG0380014005.01.T01:CDS 40.0%
! TTTCATATGATGGGAGTTGC+TGG + Chr3:48634254-48634273 MsG0380014005.01.T01:CDS 40.0%
!! CATCGGTTCAAATCCGATAA+GGG + Chr3:48632174-48632193 MsG0380014005.01.T01:intron 40.0%
!! CTTGAGTTGGGTTAAAAGCA+CGG - Chr3:48634367-48634386 None:intergenic 40.0%
!! TCATCGGTTCAAATCCGATA+AGG + Chr3:48632173-48632192 MsG0380014005.01.T01:intron 40.0%
!! TGGATTGGCAAGTTCCTATT+TGG + Chr3:48633852-48633871 MsG0380014005.01.T01:intron 40.0%
!! TTTACCCGTTGGTGTCAATT+GGG + Chr3:48633969-48633988 MsG0380014005.01.T01:CDS 40.0%
!!! ACCGTTTTGTTTTTGTGGGT+TGG + Chr3:48633745-48633764 MsG0380014005.01.T01:intron 40.0%
!!! AGGGACCGTTTTGTTTTTGT+GGG + Chr3:48633741-48633760 MsG0380014005.01.T01:intron 40.0%
!!! TTTGTTTTTGTGGGTTGGTC+CGG + Chr3:48633750-48633769 MsG0380014005.01.T01:intron 40.0%
!!! TTTTACCCGTTGGTGTCAAT+TGG + Chr3:48633968-48633987 MsG0380014005.01.T01:CDS 40.0%
AAACGAAGTCATAGGCACGT+AGG - Chr3:48634547-48634566 None:intergenic 45.0%
AAGTCATGAAGTCATGACGC+GGG - Chr3:48633418-48633437 None:intergenic 45.0%
AGGACATCTCTCTTTCAAGG+AGG - Chr3:48631492-48631511 None:intergenic 45.0%
ATGAGTGCTCTTGGAGTAGT+CGG + Chr3:48634509-48634528 MsG0380014005.01.T01:CDS 45.0%
ATGGGAGTTGCTGGTGTATT+GGG + Chr3:48634263-48634282 MsG0380014005.01.T01:CDS 45.0%
CACCATGAATAGCGCATAGT+AGG - Chr3:48634295-48634314 None:intergenic 45.0%
CACGGTGCTTTCGGATTAAT+CGG + Chr3:48634017-48634036 MsG0380014005.01.T01:CDS 45.0%
CATGGTAAGGCGTAAGTCAT+CGG + Chr3:48632157-48632176 MsG0380014005.01.T01:intron 45.0%
CCTAAACCACTAGACGATGA+GGG + Chr3:48631509-48631528 MsG0380014005.01.T01:intron 45.0%
GCAAGGAAAGAGCAATAGAC+CGG - Chr3:48633772-48633791 None:intergenic 45.0%
GCAGCTGTCAATATATCTCG+CGG - Chr3:48631132-48631151 None:intergenic 45.0%
GCGAGATATATTGACAGCTG+CGG + Chr3:48631131-48631150 MsG0380014005.01.T01:CDS 45.0%
GCGTCATGACTTCATGACTT+AGG + Chr3:48633418-48633437 MsG0380014005.01.T01:intron 45.0%
GGTTTATGGATGAGTGCTCT+TGG + Chr3:48634500-48634519 MsG0380014005.01.T01:CDS 45.0%
GTAAAATCTCCCTGTGCTTC+AGG - Chr3:48633954-48633973 None:intergenic 45.0%
GTTCCATCCCTGAAAATGCT+AGG + Chr3:48633603-48633622 MsG0380014005.01.T01:intron 45.0%
TCCATCCCTGAAAATGCTAG+GGG + Chr3:48633605-48633624 MsG0380014005.01.T01:intron 45.0%
TCCTAAACCACTAGACGATG+AGG + Chr3:48631508-48631527 MsG0380014005.01.T01:intron 45.0%
TCTCTCTTTCAAGGAGGCAA+CGG - Chr3:48631486-48631505 None:intergenic 45.0%
! AACACCCCCTAGCATTTTCA+GGG - Chr3:48633613-48633632 None:intergenic 45.0%
! CGCTTTTGGTCCCAAATCTT+TGG + Chr3:48634419-48634438 MsG0380014005.01.T01:CDS 45.0%
! TATGGATGACTGGTTACGGA+GGG + Chr3:48633722-48633741 MsG0380014005.01.T01:intron 45.0%
! TGGACTTTTGTTGCTCTCCA+CGG + Chr3:48633999-48634018 MsG0380014005.01.T01:CDS 45.0%
! TGGTTCTTTGCGCCTAGTTT+TGG + Chr3:48634167-48634186 MsG0380014005.01.T01:CDS 45.0%
! TTATGGATGACTGGTTACGG+AGG + Chr3:48633721-48633740 MsG0380014005.01.T01:intron 45.0%
!! TGAAAATGCTAGGGGGTGTT+CGG + Chr3:48633613-48633632 MsG0380014005.01.T01:intron 45.0%
!!! GAGGGACCGTTTTGTTTTTG+TGG + Chr3:48633740-48633759 MsG0380014005.01.T01:intron 45.0%
!!! TTCTTTAAAAAATTATTTAT+CGG + Chr3:48633370-48633389 MsG0380014005.01.T01:intron 5.0%
AACCAACCAGACTGACCTAG+TGG - Chr3:48634152-48634171 None:intergenic 50.0%
AACCAACCCCACGGCAAAAT+AGG - Chr3:48633796-48633815 None:intergenic 50.0%
ACCACCCAATTGACACCAAC+GGG - Chr3:48633976-48633995 None:intergenic 50.0%
AGTATGCCCTCATCGTCTAG+TGG - Chr3:48631518-48631537 None:intergenic 50.0%
AGTCATAGGCACGTAGGTTC+AGG - Chr3:48634541-48634560 None:intergenic 50.0%
ATCCACTAGGTCAGTCTGGT+TGG + Chr3:48634147-48634166 MsG0380014005.01.T01:CDS 50.0%
ATGGAGCCCCTTTAACTCAG+TGG + Chr3:48632123-48632142 MsG0380014005.01.T01:intron 50.0%
CCATCCCTGAAAATGCTAGG+GGG + Chr3:48633606-48633625 MsG0380014005.01.T01:intron 50.0%
CCCTCATCGTCTAGTGGTTT+AGG - Chr3:48631512-48631531 None:intergenic 50.0%
CGATGACTTACGCCTTACCA+TGG - Chr3:48632159-48632178 None:intergenic 50.0%
CTCTCTTTCAAGGAGGCAAC+GGG - Chr3:48631485-48631504 None:intergenic 50.0%
GACCACCCAATTGACACCAA+CGG - Chr3:48633977-48633996 None:intergenic 50.0%
GATGGGAGTTGCTGGTGTAT+TGG + Chr3:48634262-48634281 MsG0380014005.01.T01:CDS 50.0%
GCCCTACTATGCGCTATTCA+TGG + Chr3:48634290-48634309 MsG0380014005.01.T01:CDS 50.0%
GGTAGAGTAACGCCATGGTA+AGG + Chr3:48632144-48632163 MsG0380014005.01.T01:intron 50.0%
GTCATAGGCACGTAGGTTCA+GGG - Chr3:48634540-48634559 None:intergenic 50.0%
TAGTATGTCTGGGGATCTGC+TGG + Chr3:48633298-48633317 MsG0380014005.01.T01:intron 50.0%
TCAGTGGTAGAGTAACGCCA+TGG + Chr3:48632139-48632158 MsG0380014005.01.T01:intron 50.0%
TCTCTTTCAAGGAGGCAACG+GGG - Chr3:48631484-48631503 None:intergenic 50.0%
TTCTCAAGAAATCCGCGCAG+CGG + Chr3:48634565-48634584 MsG0380014005.01.T01:CDS 50.0%
TTGGGACCAAAAGCGGTTAG+CGG - Chr3:48634414-48634433 None:intergenic 50.0%
TTTCAGGGATGGAACCTTCG+AGG - Chr3:48633598-48633617 None:intergenic 50.0%
! CACAGGGAGATTTTACCCGT+TGG + Chr3:48633958-48633977 MsG0380014005.01.T01:intron 50.0%
! GAACACCCCCTAGCATTTTC+AGG - Chr3:48633614-48633633 None:intergenic 50.0%
! TGATTTTCCGGTAACAGGCG+CGG + Chr3:48631762-48631781 MsG0380014005.01.T01:intron 50.0%
!! CGATTAATCCGAAAGCACCG+TGG - Chr3:48634019-48634038 None:intergenic 50.0%
AACCCTTCTGCGTGGAGAAG+AGG - Chr3:48632736-48632755 None:intergenic 55.0%
ACTATGGGGTCCTGAAGCAC+AGG + Chr3:48633941-48633960 MsG0380014005.01.T01:intron 55.0%
ACTCCTCTTCTCCACGCAGA+AGG + Chr3:48632730-48632749 MsG0380014005.01.T01:intron 55.0%
ATTCAGGATCTTCCGCTGCG+CGG - Chr3:48634580-48634599 None:intergenic 55.0%
CTATGGGGTCCTGAAGCACA+GGG + Chr3:48633942-48633961 MsG0380014005.01.T01:intron 55.0%
CTCCTCTTCTCCACGCAGAA+GGG + Chr3:48632731-48632750 MsG0380014005.01.T01:intron 55.0%
GGTGTCAATTGGGTGGTCTG+TGG + Chr3:48633979-48633998 MsG0380014005.01.T01:CDS 55.0%
GTACCTGTGAACCAACCCCA+CGG - Chr3:48633805-48633824 None:intergenic 55.0%
GTTAATGCCGCGCCTGTTAC+CGG - Chr3:48631772-48631791 None:intergenic 55.0%
GTTGCTCTCCACGGTGCTTT+CGG + Chr3:48634008-48634027 MsG0380014005.01.T01:CDS 55.0%
TGCTCTTGGAGTAGTCGGTC+TGG + Chr3:48634514-48634533 MsG0380014005.01.T01:CDS 55.0%
! CCTTGCGCCTATTTTGCCGT+GGG + Chr3:48633786-48633805 MsG0380014005.01.T01:intron 55.0%
! CTTGCGCCTATTTTGCCGTG+GGG + Chr3:48633787-48633806 MsG0380014005.01.T01:intron 55.0%
! TCCTTGCGCCTATTTTGCCG+TGG + Chr3:48633785-48633804 MsG0380014005.01.T01:intron 55.0%
! TGGTCACCGCTAACCGCTTT+TGG + Chr3:48634405-48634424 MsG0380014005.01.T01:CDS 55.0%
!! ACCCGTTGGTGTCAATTGGG+TGG + Chr3:48633972-48633991 MsG0380014005.01.T01:CDS 55.0%
!! CCCCCTAGCATTTTCAGGGA+TGG - Chr3:48633609-48633628 None:intergenic 55.0%
!! TGCTAGGGGGTGTTCGGAAA+TGG + Chr3:48633619-48633638 MsG0380014005.01.T01:intron 55.0%
CCCACGGCAAAATAGGCGCA+AGG - Chr3:48633789-48633808 None:intergenic 60.0%
! CGCCTATTTTGCCGTGGGGT+TGG + Chr3:48633791-48633810 MsG0380014005.01.T01:intron 60.0%
!! TTGCCGTGGGGTTGGTTCAC+AGG + Chr3:48633799-48633818 MsG0380014005.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48631078 48634631 48631078 ID=MsG0380014005.01;Name=MsG0380014005.01
Chr3 mRNA 48631078 48634631 48631078 ID=MsG0380014005.01.T01;Parent=MsG0380014005.01;Name=MsG0380014005.01.T01;_AED=0.50;_eAED=0.61;_QI=0|0|0|1|1|1|2|0|286
Chr3 exon 48631078 48631269 48631078 ID=MsG0380014005.01.T01:exon:8525;Parent=MsG0380014005.01.T01
Chr3 exon 48633963 48634631 48633963 ID=MsG0380014005.01.T01:exon:8526;Parent=MsG0380014005.01.T01
Chr3 CDS 48631078 48631269 48631078 ID=MsG0380014005.01.T01:cds;Parent=MsG0380014005.01.T01
Chr3 CDS 48633963 48634631 48633963 ID=MsG0380014005.01.T01:cds;Parent=MsG0380014005.01.T01
Gene Sequence

>MsG0380014005.01.T01

ATGAACCGAAGACTGAACATTGATATACCCGAGAACAATACATTTTTGTTACCGCGAGATATATTGACAGCTGCGGATCATTTGATTAGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGTTCCATAGCAGATCTATTACAAGATCAATTTGGATTGCAAAAAGGAGATTTTACCCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATCGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAACTATATTTCGATTCATTCTATTTTTCCAAGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCTGCCCTACTATGCGCTATTCATGGTGCTACCGTAGAAAATACGTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAATATTCTCTTAA

Protein sequence

>MsG0380014005.01.T01

MNRRLNIDIPENNTFLLPRDILTAADHLIRMKFGMGTLDDMNHLKNKRIRSIADLLQDQFGLQKGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVATIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKIFS*