AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004603.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004603.01.T01 MTR_1g083350 99.405 168 1 0 1 168 1 168 1.43e-121 340
MsG0180004603.01.T01 MTR_1g083380 98.810 168 2 0 1 168 1 168 1.17e-120 337
MsG0180004603.01.T01 MTR_2g436620 86.310 168 22 1 1 168 1 167 3.16e-103 293
MsG0180004603.01.T01 MTR_1g083340 91.720 157 3 1 1 147 1 157 9.80e-99 281
MsG0180004603.01.T01 MTR_6g071090 81.366 161 29 1 1 161 1 160 1.23e-90 261
MsG0180004603.01.T01 MTR_2g436620 84.507 142 21 1 27 168 1 141 1.32e-83 243
MsG0180004603.01.T02 MTR_1g083350 99.405 168 1 0 1 168 1 168 1.43e-121 340
MsG0180004603.01.T02 MTR_1g083380 98.810 168 2 0 1 168 1 168 1.17e-120 337
MsG0180004603.01.T02 MTR_2g436620 86.310 168 22 1 1 168 1 167 3.16e-103 293
MsG0180004603.01.T02 MTR_1g083340 91.720 157 3 1 1 147 1 157 9.80e-99 281
MsG0180004603.01.T02 MTR_6g071090 81.366 161 29 1 1 161 1 160 1.23e-90 261
MsG0180004603.01.T02 MTR_2g436620 84.507 142 21 1 27 168 1 141 1.32e-83 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004603.01.T01 AT3G16640 79.167 168 35 0 1 168 1 168 4.73e-97 278
MsG0180004603.01.T01 AT3G05540 80.473 169 31 2 1 168 1 168 3.36e-90 260
MsG0180004603.01.T02 AT3G16640 79.167 168 35 0 1 168 1 168 4.73e-97 278
MsG0180004603.01.T02 AT3G05540 80.473 169 31 2 1 168 1 168 3.36e-90 260

Find 9 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTGATGTTCTTAAT+TGG 0.245351 1:-80244683 MsG0180004603.01.T01:three_prime_UTR
CTACTTTGCTTATGGCTTGA+AGG 0.363173 1:-80244746 MsG0180004603.01.T01:CDS
TAAGCAAAGTAGAGAAAAGT+TGG 0.453692 1:+80244757 None:intergenic
CCTTGTGTTTGCTTACTACA+AGG 0.455642 1:-80244794 MsG0180004603.01.T01:CDS
TAAATAGTATATAGATTAGG+AGG 0.532717 1:-80238372 MsG0180004603.01.T01:intron
GTGTTTGCTTACTACAAGGA+TGG 0.538874 1:-80244790 MsG0180004603.01.T01:CDS
GGGGAGAGCATGCATGATGA+TGG 0.565967 1:-80244820 MsG0180004603.01.T01:CDS
GTAGAGAAAAGTTGGATCAG+TGG 0.605758 1:+80244765 None:intergenic
CCTTGTAGTAAGCAAACACA+AGG 0.635355 1:+80244794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAATATAAAAAT+TGG - Chr1:80245091-80245110 MsG0180004603.01.T01:CDS 0.0%
!! AAAAAGGTAATAAAATTAAA+TGG - Chr1:80244661-80244680 MsG0180004603.01.T01:three_prime_UTR 10.0%
!! ACATATAATTTATAAAATGA+AGG - Chr1:80240835-80240854 MsG0180004603.01.T01:intron 10.0%
!! AGAAAGAAAATAAAAATATT+TGG - Chr1:80244531-80244550 MsG0180004603.01.T01:intron 10.0%
!! ATAAAGGAAATAAAAATATT+TGG - Chr1:80245261-80245280 MsG0180004603.01.T01:intron 10.0%
!! ATAAATAATATCAAAATAGT+TGG - Chr1:80244065-80244084 MsG0180004603.01.T01:intron 10.0%
!! ATATAATATTTATAATGAAG+TGG - Chr1:80246120-80246139 MsG0180004603.01.T01:five_prime_UTR 10.0%
!! ATTATTTATGTTATTATTTC+AGG + Chr1:80244054-80244073 None:intergenic 10.0%
!! TAATAAATAGTATATAGATT+AGG - Chr1:80246225-80246244 MsG0180004603.01.T01:five_prime_UTR 10.0%
!! TTAAAAAAAATTAAATGGAA+CGG - Chr1:80244691-80244710 MsG0180004603.01.T01:three_prime_UTR 10.0%
!! TTAAATATATAAGTGATAAA+AGG - Chr1:80244618-80244637 MsG0180004603.01.T01:intron 10.0%
!! TTTATTTATGAACATATATT+TGG + Chr1:80239320-80239339 MsG0180004604.01.T01:intron 10.0%
!!! ATTTTTTTTTAAGAAATCAT+CGG + Chr1:80241828-80241847 MsG0180004604.01.T01:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + Chr1:80242888-80242907 None:intergenic 10.0%
!!! TCTAAATTAATAAATTTTTC+CGG - Chr1:80243173-80243192 MsG0180004603.01.T01:intron 10.0%
!!! TGAATTTATTACTTTTTTTA+TGG - Chr1:80243743-80243762 MsG0180004603.01.T01:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + Chr1:80242889-80242908 None:intergenic 10.0%
!!! TTTAAAAAACTTTGTTATAA+AGG - Chr1:80240120-80240139 MsG0180004603.01.T01:intron 10.0%
!! AAACTCTTTAAATTAATACT+CGG - Chr1:80242736-80242755 MsG0180004603.01.T01:intron 15.0%
!! AAGTTTATAAATTCAACAAT+TGG - Chr1:80241246-80241265 MsG0180004603.01.T01:intron 15.0%
!! AATGAAATAATAAATGAGTA+AGG - Chr1:80245516-80245535 MsG0180004603.01.T01:intron 15.0%
!! ATAATTAACATGATACTAAT+TGG - Chr1:80240268-80240287 MsG0180004603.01.T01:intron 15.0%
!! ATCTATAAGAACATTATAAT+CGG - Chr1:80241851-80241870 MsG0180004603.01.T01:intron 15.0%
!! ATGAAATAATAAATGAGTAA+GGG - Chr1:80245517-80245536 MsG0180004603.01.T01:intron 15.0%
!! CATCCTTAAAAAAAATTAAA+TGG - Chr1:80244686-80244705 MsG0180004603.01.T01:three_prime_UTR 15.0%
!! TAAACTTAATAAAACCAAAA+AGG + Chr1:80239694-80239713 MsG0180004604.01.T01:intron 15.0%
!! TCAAAACAAAGTTAAAATAA+AGG - Chr1:80243629-80243648 MsG0180004603.01.T01:intron 15.0%
!! TTTAAATTGATGTTCTTAAT+TGG - Chr1:80239917-80239936 MsG0180004603.01.T01:intron 15.0%
!!! AAAATTTTGATAAAACTTGT+TGG - Chr1:80238891-80238910 MsG0180004603.01.T01:intron 15.0%
!!! AACAAAATTATTCTCTAAAA+TGG + Chr1:80245401-80245420 None:intergenic 15.0%
!!! AACAAGTTTTATCAAAATTT+TGG + Chr1:80238892-80238911 MsG0180004604.01.T01:intron 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + Chr1:80242812-80242831 None:intergenic 15.0%
!!! ATAAAATTCCTTTGAAAAAA+AGG - Chr1:80245649-80245668 MsG0180004603.01.T01:intron 15.0%
!!! ATATTTAAGATTATTGCTTT+TGG - Chr1:80239097-80239116 MsG0180004603.01.T01:intron 15.0%
!!! ATGTTTAAAATATTTTCTGA+AGG - Chr1:80243883-80243902 MsG0180004603.01.T01:intron 15.0%
!!! CTAAATTAATAAATTTTTCC+GGG - Chr1:80243174-80243193 MsG0180004603.01.T01:intron 15.0%
!!! GTATTATTGTATTTCTATAT+AGG + Chr1:80242432-80242451 MsG0180004604.01.T01:intron 15.0%
!!! GTTCCATTTAATTTTTTTTA+AGG + Chr1:80244692-80244711 None:intergenic 15.0%
!!! TAATGATTTTTGAACTTTAA+AGG + Chr1:80242976-80242995 None:intergenic 15.0%
!!! TACTTAATTGATATTGTTTT+TGG - Chr1:80244917-80244936 MsG0180004603.01.T01:intron 15.0%
!!! TATTATATTTGTTACATTGT+TGG - Chr1:80244183-80244202 MsG0180004603.01.T01:intron 15.0%
!!! TCAAAGATTACATTTTTATA+CGG - Chr1:80246256-80246275 MsG0180004603.01.T01:five_prime_UTR 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - Chr1:80242774-80242793 MsG0180004603.01.T01:intron 15.0%
!!! TTATAAGAATACCATAATTT+TGG - Chr1:80244125-80244144 MsG0180004603.01.T01:intron 15.0%
!!! TTTATTACCTTTTTTTTCAA+AGG + Chr1:80244655-80244674 None:intergenic 15.0%
!!! TTTTAATGCATAAAATTGAA+TGG + Chr1:80244876-80244895 None:intergenic 15.0%
!!! TTTTATTACCTTTTTTTCAA+AGG + Chr1:80245660-80245679 None:intergenic 15.0%
!!! TTTTTTTTTAAGAAATCATC+GGG + Chr1:80241827-80241846 MsG0180004604.01.T01:intron 15.0%
!!! TTTTTTTTTTCAATTGTTAG+TGG + Chr1:80243374-80243393 None:intergenic 15.0%
!! AAAAAAATCTCAAAGATGAA+AGG + Chr1:80238557-80238576 MsG0180004604.01.T01:intron 20.0%
!! ACCAATTGTTACATATATTT+GGG - Chr1:80241531-80241550 MsG0180004603.01.T01:intron 20.0%
!! ACGGTTCAAAAAAAATTAAA+TGG - Chr1:80244710-80244729 MsG0180004603.01.T01:three_prime_UTR 20.0%
!! AGTAGATAAGATATAGATAT+TGG - Chr1:80238349-80238368 MsG0180004603.01.T01:three_prime_UTR 20.0%
!! ATTATATAATTTCATACCCT+TGG + Chr1:80246152-80246171 None:intergenic 20.0%
!! TAAATAGTATATAGATTAGG+AGG - Chr1:80246228-80246247 MsG0180004603.01.T01:five_prime_UTR 20.0%
!! TAATAAATATTGCACAAACT+TGG - Chr1:80240067-80240086 MsG0180004603.01.T01:intron 20.0%
!! TATGTGTAATTTCTTCAAAA+TGG - Chr1:80245600-80245619 MsG0180004603.01.T01:intron 20.0%
!! TCATTTAAGGAAATTTAAGA+TGG + Chr1:80241940-80241959 MsG0180004604.01.T01:intron 20.0%
!! TGGAAAGTAGTTAAAAAAAT+CGG - Chr1:80245111-80245130 MsG0180004603.01.T01:CDS 20.0%
!! TTCAATGCAACATTAATTAT+TGG - Chr1:80245445-80245464 MsG0180004603.01.T01:intron 20.0%
!! TTTCCTTTATGATTTATCAA+TGG + Chr1:80242231-80242250 MsG0180004604.01.T01:CDS 20.0%
!! TTTGAATGCATAAAATTGAA+TGG + Chr1:80245893-80245912 None:intergenic 20.0%
!! TTTGTTTCAACAATGTTAAT+TGG + Chr1:80240966-80240985 MsG0180004604.01.T01:intron 20.0%
!!! AAACTTCTCTGTTTTATATA+TGG + Chr1:80238728-80238747 MsG0180004604.01.T01:intron 20.0%
!!! AAATAACATTCAACAACTTT+TGG - Chr1:80245855-80245874 MsG0180004603.01.T01:intron 20.0%
!!! AACTTCTCTGTTTTATATAT+GGG + Chr1:80238727-80238746 MsG0180004604.01.T01:intron 20.0%
!!! AACTTTAGCTTATTTCTTAA+AGG + Chr1:80243655-80243674 None:intergenic 20.0%
!!! AATTATTTAAAACCAAAGTG+AGG + Chr1:80238699-80238718 MsG0180004604.01.T01:intron 20.0%
!!! ATAATTTTTTTAGTGTTGCT+TGG + Chr1:80245152-80245171 None:intergenic 20.0%
!!! ATTTTGTCTGATGTAAATAT+TGG + Chr1:80240395-80240414 MsG0180004604.01.T01:intron 20.0%
!!! CATAGTTTGTTACAATATAA+AGG - Chr1:80244255-80244274 MsG0180004603.01.T01:intron 20.0%
!!! CTTTTCTTCAAAAATTGTAT+AGG + Chr1:80244390-80244409 None:intergenic 20.0%
!!! GACTTGTTAAATATTTGAAT+AGG - Chr1:80244011-80244030 MsG0180004603.01.T01:intron 20.0%
!!! TAGAATTCCTTTGAAAAAAA+AGG - Chr1:80244645-80244664 MsG0180004603.01.T01:three_prime_UTR 20.0%
!!! TAGTTGATTGATTTTTATGA+GGG + Chr1:80243479-80243498 None:intergenic 20.0%
!!! TATAAAACAGAGAAGTTTTA+TGG - Chr1:80238730-80238749 MsG0180004603.01.T01:intron 20.0%
!!! TATTTGAACTTCTACTATTT+TGG + Chr1:80240479-80240498 MsG0180004604.01.T01:intron 20.0%
!!! TTAGTTGATTGATTTTTATG+AGG + Chr1:80243480-80243499 None:intergenic 20.0%
!!! TTTTAAAGACACCAAAATTA+TGG + Chr1:80244139-80244158 None:intergenic 20.0%
! AAAATCCACAATCAAGTATT+AGG + Chr1:80239022-80239041 MsG0180004604.01.T01:intron 25.0%
! AAACATATTGCATCACTATT+TGG + Chr1:80241114-80241133 MsG0180004604.01.T01:intron 25.0%
! AAATATTCATGTAACACTTG+TGG + Chr1:80238973-80238992 MsG0180004604.01.T01:intron 25.0%
! AAATTCAATCCTAACCAATT+TGG + Chr1:80241082-80241101 MsG0180004604.01.T01:intron 25.0%
! AACCTCCTTGAAAAATTAAA+TGG - Chr1:80245688-80245707 MsG0180004603.01.T01:intron 25.0%
! AAGGAATTATGACTACATTA+AGG + Chr1:80242397-80242416 MsG0180004604.01.T01:intron 25.0%
! AAGGAGAAATGAGAAAATTA+AGG - Chr1:80240139-80240158 MsG0180004603.01.T01:intron 25.0%
! AAGGATCTCAAAAATGATTT+GGG + Chr1:80242378-80242397 MsG0180004604.01.T01:intron 25.0%
! AATAACTCGATATAGAGAAT+TGG + Chr1:80242133-80242152 MsG0180004604.01.T01:intron 25.0%
! AATATATGTAACAATTGGTC+AGG + Chr1:80241530-80241549 MsG0180004604.01.T01:intron 25.0%
! AATTGCATTTAATCCCTTTA+AGG + Chr1:80242040-80242059 MsG0180004604.01.T01:intron 25.0%
! ACAACATTTATTTGATTCCT+TGG - Chr1:80245577-80245596 MsG0180004603.01.T01:intron 25.0%
! ACCCAAATATATGTAACAAT+TGG + Chr1:80241535-80241554 MsG0180004604.01.T01:intron 25.0%
! AGAAATAAGCTAAAGTTGTT+TGG - Chr1:80243658-80243677 MsG0180004603.01.T01:intron 25.0%
! AGAACAAAAAACAACCTTAA+AGG - Chr1:80242023-80242042 MsG0180004603.01.T01:intron 25.0%
! AGGAGAAATGAGAAAATTAA+GGG - Chr1:80240140-80240159 MsG0180004603.01.T01:intron 25.0%
! CCTTGAAAAATTAAATGGAA+CGG - Chr1:80245693-80245712 MsG0180004603.01.T01:intron 25.0%
! CGTGAATAAAAATATTTGTG+AGG - Chr1:80245300-80245319 MsG0180004603.01.T01:intron 25.0%
! GAAAAACAAACGAAAACTAA+AGG + Chr1:80238580-80238599 MsG0180004604.01.T01:intron 25.0%
! GAACAAAAAACAACCTTAAA+GGG - Chr1:80242024-80242043 MsG0180004603.01.T01:intron 25.0%
! GACCAATTGTTACATATATT+TGG - Chr1:80241530-80241549 MsG0180004603.01.T01:intron 25.0%
! GATCTCATAACTATGAAAAA+AGG - Chr1:80243510-80243529 MsG0180004603.01.T01:intron 25.0%
! GATTAATTACTCAATCAGTT+AGG + Chr1:80239743-80239762 MsG0180004604.01.T01:intron 25.0%
! GTACCATTGATAAATCATAA+AGG - Chr1:80242225-80242244 MsG0180004603.01.T01:intron 25.0%
! TAAATTAATAATGTCATGCC+CGG + Chr1:80243195-80243214 None:intergenic 25.0%
! TAAGGATCTCAAAAATGATT+TGG + Chr1:80242379-80242398 MsG0180004604.01.T01:intron 25.0%
! TAATACAATCCAAATTGGTT+AGG - Chr1:80241070-80241089 MsG0180004603.01.T01:intron 25.0%
! TAATGTTGCTAACTTTACTT+TGG - Chr1:80239141-80239160 MsG0180004603.01.T01:intron 25.0%
! TAGTCTAATGCATATTAACA+TGG - Chr1:80240789-80240808 MsG0180004603.01.T01:intron 25.0%
! TCCAATTATGTACTAAATAC+AGG + Chr1:80238653-80238672 MsG0180004604.01.T01:intron 25.0%
! TCCTGTATTTAGTACATAAT+TGG - Chr1:80238649-80238668 MsG0180004603.01.T01:intron 25.0%
! TGAAAAAAATTGATGCATGT+GGG + Chr1:80242706-80242725 None:intergenic 25.0%
! TGAATAGGAGAAACAATTTA+AGG - Chr1:80244026-80244045 MsG0180004603.01.T01:intron 25.0%
! TGCATTTATCTAGACTTTAT+AGG + Chr1:80240915-80240934 MsG0180004604.01.T01:intron 25.0%
! TTGAAAAAAATTGATGCATG+TGG + Chr1:80242707-80242726 None:intergenic 25.0%
! TTTCTCTCTCTACAATAAAT+AGG + Chr1:80245490-80245509 None:intergenic 25.0%
!! AAAAATCTTCCTTTGTTATG+TGG + Chr1:80243314-80243333 None:intergenic 25.0%
!! ATTTCGCTTTAAGTCATTTA+AGG + Chr1:80241953-80241972 MsG0180004604.01.T01:intron 25.0%
!! CAAAAAACAGAGAAGTTTTA+AGG - Chr1:80238779-80238798 MsG0180004603.01.T01:intron 25.0%
!! CTCATTTTGTTCAAAAGATT+AGG - Chr1:80240234-80240253 MsG0180004603.01.T01:intron 25.0%
!! CTGATTTTCACATTTATGAA+CGG + Chr1:80240196-80240215 MsG0180004604.01.T01:intron 25.0%
!! TCAACTTCTCTACATTTTTA+AGG + Chr1:80245970-80245989 None:intergenic 25.0%
!! TTCAAAACTGACGTTTTATA+TGG + Chr1:80241913-80241932 MsG0180004604.01.T01:intron 25.0%
!! TTCACGATTATGCATTTTAA+GGG + Chr1:80243397-80243416 None:intergenic 25.0%
!! TTTCACGATTATGCATTTTA+AGG + Chr1:80243398-80243417 None:intergenic 25.0%
!!! AATCAATGTTACAGTTTTGT+TGG - Chr1:80239759-80239778 MsG0180004603.01.T01:intron 25.0%
!!! ACTTTTTTTAAGGAGAAGTT+AGG + Chr1:80244943-80244962 None:intergenic 25.0%
!!! AGTTGATTGATTTTTATGAG+GGG + Chr1:80243478-80243497 None:intergenic 25.0%
!!! ATCAATGTTACAGTTTTGTT+GGG - Chr1:80239760-80239779 MsG0180004603.01.T01:intron 25.0%
!!! CAACTTCTCTACTTTTTTTA+AGG + Chr1:80244953-80244972 None:intergenic 25.0%
!!! CTTAAAACTTCTCTGTTTTT+TGG + Chr1:80238781-80238800 MsG0180004604.01.T01:intron 25.0%
!!! GATTGTGGATTTTATTTTCT+TGG - Chr1:80239029-80239048 MsG0180004603.01.T01:intron 25.0%
!!! TACATTTTTAAGGAGAAGTT+AGG + Chr1:80245960-80245979 None:intergenic 25.0%
!!! TTCCATTTAATTTTTCAAGG+AGG + Chr1:80245693-80245712 None:intergenic 25.0%
!!! TTTAAGGTTGTTTTTTGTTC+TGG + Chr1:80242024-80242043 MsG0180004604.01.T01:intron 25.0%
!!! TTTAGTTTTTGCTTCATCAT+AGG + Chr1:80243437-80243456 None:intergenic 25.0%
AAATTGAATGGAATGAGCTT+TGG + Chr1:80244864-80244883 None:intergenic 30.0%
AAATTGAGAATGGAATGCTT+TGG - Chr1:80239216-80239235 MsG0180004603.01.T01:intron 30.0%
AACAATGTTAATTGGACAAC+GGG + Chr1:80240958-80240977 MsG0180004604.01.T01:intron 30.0%
AACGTTAATATGCACATTGT+TGG + Chr1:80240308-80240327 MsG0180004604.01.T01:intron 30.0%
AAGAACTCAAGGTAAATAGA+TGG - Chr1:80241580-80241599 MsG0180004603.01.T01:intron 30.0%
AATTGAGAATGGAATGCTTT+GGG - Chr1:80239217-80239236 MsG0180004603.01.T01:intron 30.0%
AATTGCTTCTTATCAAAAGC+TGG + Chr1:80239516-80239535 MsG0180004604.01.T01:intron 30.0%
ACTGTACATACCAAACAAAA+AGG + Chr1:80243093-80243112 None:intergenic 30.0%
AGTAGTTAAAAAAATCGGTG+AGG - Chr1:80245116-80245135 MsG0180004603.01.T01:CDS 30.0%
ATATAGGACTTTCAATGTCA+AGG + Chr1:80242416-80242435 MsG0180004604.01.T01:intron 30.0%
ATATTCATGAGGTTGGATAA+AGG - Chr1:80245245-80245264 MsG0180004603.01.T01:intron 30.0%
ATCGTAAACTATCTTGACTT+TGG + Chr1:80240437-80240456 MsG0180004604.01.T01:intron 30.0%
ATCTTAAACTTCTCAACAAC+CGG - Chr1:80241476-80241495 MsG0180004603.01.T01:intron 30.0%
ATGTAGAAGCAACTGAATTT+AGG - Chr1:80246036-80246055 MsG0180004603.01.T01:intron 30.0%
CAACAATGTTAATTGGACAA+CGG + Chr1:80240959-80240978 MsG0180004604.01.T01:intron 30.0%
CACAATCAAGTATTAGGTTA+CGG + Chr1:80239016-80239035 MsG0180004604.01.T01:intron 30.0%
CACATCACACAATAAACTTT+AGG + Chr1:80239347-80239366 MsG0180004604.01.T01:intron 30.0%
CATAAGGAAATACATCTTTC+AGG - Chr1:80241662-80241681 MsG0180004603.01.T01:intron 30.0%
CCAAATATGAAAACAGCTTT+AGG - Chr1:80242657-80242676 MsG0180004603.01.T01:intron 30.0%
CGTGAATAAAGATATTTGTG+AGG - Chr1:80244570-80244589 MsG0180004603.01.T01:intron 30.0%
CTGAATTTGGGAGAAAAAAT+TGG - Chr1:80245029-80245048 MsG0180004603.01.T01:CDS 30.0%
GATGAAACACATACAATTGT+AGG + Chr1:80239659-80239678 MsG0180004604.01.T01:intron 30.0%
GATGCTTGTGAAATAAATTG+TGG - Chr1:80244800-80244819 MsG0180004603.01.T01:CDS 30.0%
GGAAGATAAATTAGAAGTCA+TGG + Chr1:80240894-80240913 MsG0180004604.01.T01:intron 30.0%
GGTTTAACCTTTAGATTTGA+AGG - Chr1:80238842-80238861 MsG0180004603.01.T01:intron 30.0%
GTAGAGAAGTTGAAAAAAAC+CGG - Chr1:80244961-80244980 MsG0180004603.01.T01:CDS 30.0%
GTTACGGTAATCATGTTTAA+GGG + Chr1:80239000-80239019 MsG0180004604.01.T01:intron 30.0%
TAAGCAAAGTAGAGAAAAGT+TGG + Chr1:80239846-80239865 MsG0180004604.01.T01:intron 30.0%
TACTATACTCCACATAACAA+AGG - Chr1:80243302-80243321 MsG0180004603.01.T01:intron 30.0%
TAGAGAAGTTGAAAAAAACC+GGG - Chr1:80244962-80244981 MsG0180004603.01.T01:CDS 30.0%
TAGAGAAGTTGAAAAAAAGC+CGG - Chr1:80245978-80245997 MsG0180004603.01.T01:intron 30.0%
TCGATATCAGAATGAACAAA+GGG + Chr1:80242471-80242490 MsG0180004604.01.T01:CDS 30.0%
TCGTAAACTATCTTGACTTT+GGG + Chr1:80240436-80240455 MsG0180004604.01.T01:intron 30.0%
TCTCGTAATACAATCCAAAT+TGG - Chr1:80241065-80241084 MsG0180004603.01.T01:intron 30.0%
TGAAGAAATTACACATACCA+AGG + Chr1:80245597-80245616 None:intergenic 30.0%
TGATTGGTGTAAATTTGTGT+TGG + Chr1:80242601-80242620 MsG0180004604.01.T01:CDS 30.0%
TGGTTTCTTTCTCTGATTTA+GGG + Chr1:80242171-80242190 MsG0180004604.01.T01:intron 30.0%
TGTCATAGACTAACCAAAAA+GGG - Chr1:80240362-80240381 MsG0180004603.01.T01:intron 30.0%
TGTGTATATATTCATGAGGT+TGG - Chr1:80245238-80245257 MsG0180004603.01.T01:intron 30.0%
TGTGTGTGTATATATTCATG+AGG - Chr1:80245234-80245253 MsG0180004603.01.T01:intron 30.0%
TTCACTTTCTTCTTCATAAG+AGG + Chr1:80243546-80243565 None:intergenic 30.0%
TTCGATATCAGAATGAACAA+AGG + Chr1:80242472-80242491 MsG0180004604.01.T01:CDS 30.0%
TTGATATTGTTGACACTTTC+AGG - Chr1:80239478-80239497 MsG0180004603.01.T01:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG + Chr1:80242870-80242889 None:intergenic 30.0%
TTGGTTTCTTTCTCTGATTT+AGG + Chr1:80242172-80242191 MsG0180004604.01.T01:intron 30.0%
TTTCACTCCTTCAAATCTAA+AGG + Chr1:80238852-80238871 MsG0180004604.01.T01:intron 30.0%
TTTCTGTATCATCAACTTTC+TGG - Chr1:80242560-80242579 MsG0180004603.01.T01:intron 30.0%
! AAGCATTGCTTTAAATGCTA+AGG - Chr1:80244472-80244491 MsG0180004603.01.T01:intron 30.0%
! AAGTAGCATTCAACAACTTT+TGG - Chr1:80244838-80244857 MsG0180004603.01.T01:intron 30.0%
! AATGGACAAGTATTGTGAAA+CGG - Chr1:80245618-80245637 MsG0180004603.01.T01:intron 30.0%
! AATGGACAAGTATTGTGAAA+CGG + Chr1:80245637-80245618 None:intergenic 30.0%
! ACTTTTCTCTACTTTGCTTA+TGG - Chr1:80239846-80239865 MsG0180004603.01.T01:intron 30.0%
! ATATGGTTGATGTAACACTA+TGG + Chr1:80241634-80241653 MsG0180004604.01.T01:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG - Chr1:80242861-80242880 MsG0180004603.01.T01:intron 30.0%
! TATGGTTGATGTAACACTAT+GGG + Chr1:80241633-80241652 MsG0180004604.01.T01:intron 30.0%
! TATTGGCAAAAATCCCTTTT+TGG + Chr1:80240378-80240397 MsG0180004604.01.T01:intron 30.0%
! TCAAAAATGATTTGGGCATT+TGG + Chr1:80242371-80242390 MsG0180004604.01.T01:intron 30.0%
! TCACTATCTTTCATCCTTTT+TGG - Chr1:80239677-80239696 MsG0180004603.01.T01:intron 30.0%
! TCATGTGCATAATTTGTGTT+AGG + Chr1:80241137-80241156 MsG0180004604.01.T01:intron 30.0%
!! AATTGTAGGTCTTTGAGTTT+TGG + Chr1:80239645-80239664 MsG0180004604.01.T01:intron 30.0%
!! ATTGTAGGTCTTTGAGTTTT+GGG + Chr1:80239644-80239663 MsG0180004604.01.T01:intron 30.0%
!! ATTTTCTTGGTTACTGATTG+TGG - Chr1:80239042-80239061 MsG0180004603.01.T01:intron 30.0%
!! CCGTTCCATTTAATTTTTCA+AGG + Chr1:80245696-80245715 None:intergenic 30.0%
!! CCTAAAGCTGTTTTCATATT+TGG + Chr1:80242660-80242679 MsG0180004604.01.T01:CDS 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - Chr1:80243080-80243099 MsG0180004603.01.T01:intron 30.0%
!!! AAAGTTGTTGTTTTTGTGAC+AGG - Chr1:80238923-80238942 MsG0180004603.01.T01:intron 30.0%
!!! AAGTTGTTGTTTTTGTGACA+GGG - Chr1:80238924-80238943 MsG0180004603.01.T01:intron 30.0%
!!! GATGATTGAATTTTAGCTCA+TGG + Chr1:80243274-80243293 None:intergenic 30.0%
!!! TACTTTTTTTATGGTGTCCA+GGG - Chr1:80243752-80243771 MsG0180004603.01.T01:intron 30.0%
!!! TCAATGTTACAGTTTTGTTG+GGG - Chr1:80239761-80239780 MsG0180004603.01.T01:intron 30.0%
!!! TGTTTTTTGTTCTGGTACAA+AGG + Chr1:80242016-80242035 MsG0180004604.01.T01:intron 30.0%
!!! TTACTTTTTTTATGGTGTCC+AGG - Chr1:80243751-80243770 MsG0180004603.01.T01:intron 30.0%
AAATGGAAGCAAAGAACTCA+AGG - Chr1:80241569-80241588 MsG0180004603.01.T01:intron 35.0%
ACAATGTTAATTGGACAACG+GGG + Chr1:80240957-80240976 MsG0180004604.01.T01:intron 35.0%
ACTACTGTGTTCATATGCAT+TGG + Chr1:80243006-80243025 None:intergenic 35.0%
ACTTTAATCTCTCACAACGA+CGG - Chr1:80246011-80246030 MsG0180004603.01.T01:intron 35.0%
AGAGAAGTTGAAAAAAACCG+GGG - Chr1:80244963-80244982 MsG0180004603.01.T01:CDS 35.0%
AGAGAAGTTGAAAAAAAGCC+GGG - Chr1:80245979-80245998 MsG0180004603.01.T01:intron 35.0%
AGATGTATTTCCTTATGCAG+TGG + Chr1:80241659-80241678 MsG0180004604.01.T01:intron 35.0%
AGCAAGCTATGGAAAATACT+TGG + Chr1:80240631-80240650 MsG0180004604.01.T01:intron 35.0%
AGTGTAGAAGCAACTGAATT+TGG - Chr1:80245016-80245035 MsG0180004603.01.T01:CDS 35.0%
ATAAATATATGCCAAGTCCG+GGG + Chr1:80243784-80243803 None:intergenic 35.0%
ATGCTAAACAGGGAAATAAC+TGG - Chr1:80240761-80240780 MsG0180004603.01.T01:intron 35.0%
ATTGTCAAGACAACACGAAT+TGG + Chr1:80241792-80241811 MsG0180004604.01.T01:intron 35.0%
ATTTGTCAGCATCAGATGAT+AGG + Chr1:80241711-80241730 MsG0180004604.01.T01:intron 35.0%
CATAAATATATGCCAAGTCC+GGG + Chr1:80243785-80243804 None:intergenic 35.0%
CATTCTCAATTTCCTTGTAG+GGG + Chr1:80239208-80239227 MsG0180004604.01.T01:intron 35.0%
CATTGATGTCTTCGAACATT+TGG - Chr1:80241036-80241055 MsG0180004603.01.T01:intron 35.0%
CCAGAAATTGTTATGTTGCA+TGG + Chr1:80243343-80243362 None:intergenic 35.0%
CCATGCAACATAACAATTTC+TGG - Chr1:80243340-80243359 MsG0180004603.01.T01:intron 35.0%
CCATTCTCAATTTCCTTGTA+GGG + Chr1:80239209-80239228 MsG0180004604.01.T01:intron 35.0%
CGACAACAATTCAAGAAACA+TGG - Chr1:80241373-80241392 MsG0180004603.01.T01:intron 35.0%
CGTAAAAAACCTTTGCCAAA+CGG + Chr1:80243595-80243614 None:intergenic 35.0%
CGTAACCTAATACTTGATTG+TGG - Chr1:80239014-80239033 MsG0180004603.01.T01:intron 35.0%
CGTTTGAGAAATGCTAAACA+GGG - Chr1:80240751-80240770 MsG0180004603.01.T01:intron 35.0%
CTAATTTACATTGAGTCCCA+AGG - Chr1:80243028-80243047 MsG0180004603.01.T01:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG + Chr1:80242871-80242890 None:intergenic 35.0%
GATATAGAGAATTGGAGCAT+TGG + Chr1:80242125-80242144 MsG0180004604.01.T01:intron 35.0%
GATATCTTAATCTCCCACAA+CGG - Chr1:80244992-80245011 MsG0180004603.01.T01:CDS 35.0%
GATGTATTTCCTTATGCAGT+GGG + Chr1:80241658-80241677 MsG0180004604.01.T01:intron 35.0%
GATTTGGGCATTTGGAAAAT+AGG + Chr1:80242363-80242382 MsG0180004604.01.T01:intron 35.0%
GCAAGCTATGGAAAATACTT+GGG + Chr1:80240630-80240649 MsG0180004604.01.T01:intron 35.0%
GCATAAATATATGCCAAGTC+CGG + Chr1:80243786-80243805 None:intergenic 35.0%
GGCAAAATTGGAATTTCACA+TGG - Chr1:80246193-80246212 MsG0180004603.01.T01:five_prime_UTR 35.0%
GGCATTTGGAAAATAGGATT+TGG + Chr1:80242357-80242376 MsG0180004604.01.T01:intron 35.0%
GGTTACGGTAATCATGTTTA+AGG + Chr1:80239001-80239020 MsG0180004604.01.T01:intron 35.0%
GTGATGTGATTATTTGCAGT+GGG - Chr1:80239359-80239378 MsG0180004603.01.T01:intron 35.0%
GTGTAGAAGCAACTGAATTT+GGG - Chr1:80245017-80245036 MsG0180004603.01.T01:CDS 35.0%
GTGTCATAGACTAACCAAAA+AGG - Chr1:80240361-80240380 MsG0180004603.01.T01:intron 35.0%
GTTTCTCATAAACCTCACTT+TGG - Chr1:80238684-80238703 MsG0180004603.01.T01:intron 35.0%
TAGCGAAAGTGAGTGATATA+CGG + Chr1:80238442-80238461 MsG0180004604.01.T01:intron 35.0%
TCAGAACTTAAGTCAGAGTT+CGG + Chr1:80241325-80241344 MsG0180004604.01.T01:intron 35.0%
TCCATTCTCAATTTCCTTGT+AGG + Chr1:80239210-80239229 MsG0180004604.01.T01:intron 35.0%
TCGAAGACATCAATGTCAAA+TGG + Chr1:80241031-80241050 MsG0180004604.01.T01:intron 35.0%
TCGTTTGAGAAATGCTAAAC+AGG - Chr1:80240750-80240769 MsG0180004603.01.T01:intron 35.0%
TCTAGATAAATGCATGCATG+TGG - Chr1:80240921-80240940 MsG0180004603.01.T01:intron 35.0%
TGTGATGTGATTATTTGCAG+TGG - Chr1:80239358-80239377 MsG0180004603.01.T01:intron 35.0%
TGTGTGTGTATATATTAGCG+AGG - Chr1:80244505-80244524 MsG0180004603.01.T01:intron 35.0%
TGTTATGTGGAGTATAGTAG+AGG + Chr1:80243301-80243320 None:intergenic 35.0%
TTATACCTGTAAGAAGATCC+TGG + Chr1:80238531-80238550 MsG0180004604.01.T01:intron 35.0%
TTCGTACGACTCAATCATAT+AGG - Chr1:80242624-80242643 MsG0180004603.01.T01:intron 35.0%
TTGTCAAGACAACACGAATT+GGG + Chr1:80241791-80241810 MsG0180004604.01.T01:intron 35.0%
TTTCCAATCTGTCTCAAGTT+AGG + Chr1:80241272-80241291 MsG0180004604.01.T01:intron 35.0%
! AGTTTTCTGTTTGTGTTCTG+TGG - Chr1:80238821-80238840 MsG0180004603.01.T01:intron 35.0%
! AGTTTTTGCTTCATCATAGG+TGG + Chr1:80243434-80243453 None:intergenic 35.0%
! ATTAAGATATCGATTGACCC+CGG + Chr1:80244983-80245002 None:intergenic 35.0%
! CTTTGGCGATGAATTTTTCT+AGG - Chr1:80239158-80239177 MsG0180004603.01.T01:intron 35.0%
! GGTTGTCATTGACTACAAAA+TGG - Chr1:80241552-80241571 MsG0180004603.01.T01:intron 35.0%
! TTGTGTTGGTCATATCATTG+AGG + Chr1:80242587-80242606 MsG0180004604.01.T01:CDS 35.0%
!! CACATTGTTGGTTTCTTCAT+TGG + Chr1:80240296-80240315 MsG0180004604.01.T01:intron 35.0%
!! GAAGAGTTTGAGAAGTGTTA+AGG - Chr1:80241347-80241366 MsG0180004603.01.T01:intron 35.0%
!! TTGAACAACTCTTGCTTTTC+TGG + Chr1:80239588-80239607 MsG0180004604.01.T01:intron 35.0%
!! TTGTTACATTGTTGGTGTCA+TGG - Chr1:80244191-80244210 MsG0180004603.01.T01:intron 35.0%
!!! AGTTGTTGTTTTTGTGACAG+GGG - Chr1:80238925-80238944 MsG0180004603.01.T01:intron 35.0%
!!! CGTTTGGCAAAGGTTTTTTA+CGG - Chr1:80243593-80243612 MsG0180004603.01.T01:intron 35.0%
!!! TTTTCCATAGCTTGCTCTTT+CGG - Chr1:80240635-80240654 MsG0180004603.01.T01:intron 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG + Chr1:80242802-80242821 None:intergenic 35.0%
AAACGGTATCTAAGTTCAGC+TGG + Chr1:80243578-80243597 None:intergenic 40.0%
AACCATATTCCCACTGCATA+AGG - Chr1:80241646-80241665 MsG0180004603.01.T01:intron 40.0%
AACGGTATCTAAGTTCAGCT+GGG + Chr1:80243577-80243596 None:intergenic 40.0%
AAGATCCTGGTAAACAAGCA+TGG + Chr1:80238518-80238537 MsG0180004604.01.T01:intron 40.0%
ACTCGAACATGCAAGTTCTT+CGG - Chr1:80240528-80240547 MsG0180004603.01.T01:intron 40.0%
ACTTAGATACCGTTTGGCAA+AGG - Chr1:80243583-80243602 MsG0180004603.01.T01:intron 40.0%
AGCATCTCTTCAATTCACGT+TGG + Chr1:80244786-80244805 None:intergenic 40.0%
AGCTATGGAAAATACTTGGG+TGG + Chr1:80240627-80240646 MsG0180004604.01.T01:intron 40.0%
AGCTGAACTTAGATACCGTT+TGG - Chr1:80243577-80243596 MsG0180004603.01.T01:intron 40.0%
AGTGATATACGGTAGAAGAG+TGG + Chr1:80238431-80238450 MsG0180004604.01.T01:intron 40.0%
CCCTACAAGGAAATTGAGAA+TGG - Chr1:80239206-80239225 MsG0180004603.01.T01:intron 40.0%
CCTTGTAGTAAGCAAACACA+AGG + Chr1:80239809-80239828 MsG0180004604.01.T01:intron 40.0%
CCTTGTGTTTGCTTACTACA+AGG - Chr1:80239806-80239825 MsG0180004603.01.T01:intron 40.0%
CTACTTTGCTTATGGCTTGA+AGG - Chr1:80239854-80239873 MsG0180004603.01.T01:intron 40.0%
GCATCTCTTCAATTCACGTT+GGG + Chr1:80244785-80244804 None:intergenic 40.0%
GCTAGCTATAAAACACATGC+AGG + Chr1:80241007-80241026 MsG0180004604.01.T01:intron 40.0%
GCTATGGAAAATACTTGGGT+GGG + Chr1:80240626-80240645 MsG0180004604.01.T01:intron 40.0%
GTAGAGAAAAGTTGGATCAG+TGG + Chr1:80239838-80239857 MsG0180004604.01.T01:intron 40.0%
GTGTTTGCTTACTACAAGGA+TGG - Chr1:80239810-80239829 MsG0180004603.01.T01:intron 40.0%
GTTTACCAGGATCTTCTTAC+AGG - Chr1:80238523-80238542 MsG0180004603.01.T01:intron 40.0%
TCAGCAGCAAAGATCTACTT+TGG - Chr1:80240501-80240520 MsG0180004603.01.T01:intron 40.0%
TTCCTTATGCAGTGGGAATA+TGG + Chr1:80241651-80241670 MsG0180004604.01.T01:intron 40.0%
! ATCTCTTTTCAACTCACGCT+AGG + Chr1:80245800-80245819 None:intergenic 40.0%
! ATTCCAATTTTGCCCCTATG+AGG + Chr1:80246187-80246206 None:intergenic 40.0%
! GAAAATAGGATTTGGAGTGC+TGG + Chr1:80242349-80242368 MsG0180004604.01.T01:intron 40.0%
! GACAAGTATTGTGAAACGGA+GGG - Chr1:80245622-80245641 MsG0180004603.01.T01:intron 40.0%
! GACAAGTATTGTGAAACGGA+GGG + Chr1:80245641-80245622 None:intergenic 40.0%
! TGAGTCGTACGAAAGTTGAT+TGG + Chr1:80242617-80242636 MsG0180004604.01.T01:CDS 40.0%
! TTCCAATTTTGCCCCTATGA+GGG + Chr1:80246186-80246205 None:intergenic 40.0%
! TTTTTACATTGGCCCAAGTC+GGG + Chr1:80242801-80242820 None:intergenic 40.0%
!! GATTAAAGTGTCGTTTGACC+CGG + Chr1:80246000-80246019 None:intergenic 40.0%
!! TAGAGAATTGGAGCATTGGA+AGG + Chr1:80242121-80242140 MsG0180004604.01.T01:intron 40.0%
!! TATTTGCAGTGGGTTGTTCA+AGG - Chr1:80239369-80239388 MsG0180004603.01.T01:intron 40.0%
!!! ACTATTTTGGCGTATCGCTT+TGG + Chr1:80240466-80240485 MsG0180004604.01.T01:intron 40.0%
AAGACAACACGAATTGGGAC+TGG + Chr1:80241786-80241805 MsG0180004604.01.T01:intron 45.0%
AATGAAGTGGCACTCTCCAA+GGG - Chr1:80246133-80246152 MsG0180004603.01.T01:five_prime_UTR 45.0%
AATTACGTTGCAGCGAACCT+TGG + Chr1:80243048-80243067 None:intergenic 45.0%
ATTACCGAATTGCCCCTCAT+AGG - Chr1:80246170-80246189 MsG0180004603.01.T01:five_prime_UTR 45.0%
ATTACGTTGCAGCGAACCTT+GGG + Chr1:80243047-80243066 None:intergenic 45.0%
CGATGATCAAGCTGTCAAAG+TGG - Chr1:80239455-80239474 MsG0180004603.01.T01:intron 45.0%
CGCTGCAACGTAATTCTAAG+AGG - Chr1:80243053-80243072 MsG0180004603.01.T01:intron 45.0%
GGAGCAGTGGATGTGAATAT+TGG - Chr1:80239390-80239409 MsG0180004603.01.T01:intron 45.0%
GTGAGCTTAGCTCAGTTGAT+AGG + Chr1:80243815-80243834 None:intergenic 45.0%
TAATGAAGTGGCACTCTCCA+AGG - Chr1:80246132-80246151 MsG0180004603.01.T01:five_prime_UTR 45.0%
TATTCAACCCGTGCAAAGCA+CGG + Chr1:80240003-80240022 MsG0180004604.01.T01:intron 45.0%
TCTCAACAACCGGATGATGT+AGG - Chr1:80241486-80241505 MsG0180004603.01.T01:intron 45.0%
TGCAACCATGCTTGTTTACC+AGG - Chr1:80238510-80238529 MsG0180004603.01.T01:intron 45.0%
TGGCCTAACTTGAGACAGAT+TGG - Chr1:80241266-80241285 MsG0180004603.01.T01:intron 45.0%
TGTTGACACTTTCAGGCTTC+AGG - Chr1:80239485-80239504 MsG0180004603.01.T01:intron 45.0%
TTACAAACCCGTGCTTTGCA+CGG - Chr1:80239992-80240011 MsG0180004603.01.T01:intron 45.0%
TTACCGAATTGCCCCTCATA+GGG - Chr1:80246171-80246190 MsG0180004603.01.T01:five_prime_UTR 45.0%
TTTCTGCAGAGAACGTGTGA+TGG + Chr1:80240592-80240611 MsG0180004604.01.T01:intron 45.0%
! AGAGAACGTGTGATGGAAGA+AGG + Chr1:80240585-80240604 MsG0180004604.01.T01:intron 45.0%
! GCATTGGAAGGCTTTGATTG+AGG + Chr1:80242109-80242128 MsG0180004604.01.T01:intron 45.0%
! GGACAAGTATTGTGAAACGG+AGG - Chr1:80245621-80245640 MsG0180004603.01.T01:intron 45.0%
! GGACAAGTATTGTGAAACGG+AGG + Chr1:80245640-80245621 None:intergenic 45.0%
! TCCAATTTTGCCCCTATGAG+GGG + Chr1:80246185-80246204 None:intergenic 45.0%
!! AGGGGTTCATTTTTCGACAC+TGG + Chr1:80243460-80243479 None:intergenic 45.0%
!! GAATGGAATGCTTTGGGAAG+TGG - Chr1:80239223-80239242 MsG0180004603.01.T01:intron 45.0%
!! GATTTGGAGTGCTGGATTCT+TGG + Chr1:80242341-80242360 MsG0180004604.01.T01:intron 45.0%
!!! GGTCTTTGAGTTTTGGGAGA+AGG + Chr1:80239638-80239657 MsG0180004604.01.T01:intron 45.0%
!! ATAGTTAAAAATAAAAAAAT+TGG - Chr1:80245055-80245074 MsG0180004603.01.T01:CDS 5.0%
!! ATATTAAAAAATAAAAGAAA+AGG - Chr1:80244757-80244776 MsG0180004603.01.T01:CDS 5.0%
!! TAAAATAAAATAATGTTAAA+TGG - Chr1:80245725-80245744 MsG0180004603.01.T01:intron 5.0%
!!! ATAATAAGATAATAATTTTT+TGG - Chr1:80242839-80242858 MsG0180004603.01.T01:intron 5.0%
!!! TAATAAGATAATAATTTTTT+GGG - Chr1:80242840-80242859 MsG0180004603.01.T01:intron 5.0%
!!! TATATAAGTATAATTTTTTT+AGG - Chr1:80244362-80244381 MsG0180004603.01.T01:intron 5.0%
!!! TTTGATTTATTATATTTTTT+TGG + Chr1:80242191-80242210 MsG0180004604.01.T01:intron 5.0%
AAATTTGTCCGGTCCCGACT+TGG - Chr1:80242785-80242804 MsG0180004603.01.T01:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG - Chr1:80242786-80242805 MsG0180004603.01.T01:intron 50.0%
ACAAGCATGGTTGCAGTTGC+TGG + Chr1:80238505-80238524 MsG0180004604.01.T01:intron 50.0%
ATTCAACCCGTGCAAAGCAC+GGG + Chr1:80240002-80240021 MsG0180004604.01.T01:intron 50.0%
CTCTGACTCATTCCCCTACA+AGG - Chr1:80239193-80239212 MsG0180004603.01.T01:intron 50.0%
GAAAATACTTGGGTGGGCAG+TGG + Chr1:80240620-80240639 MsG0180004604.01.T01:intron 50.0%
GCGCATCAACCTACATCATC+CGG + Chr1:80241498-80241517 MsG0180004604.01.T01:intron 50.0%
GGGAAGTGGAAGGAAAGGTT+TGG - Chr1:80239237-80239256 MsG0180004603.01.T01:intron 50.0%
GGTGCTAATCCTTCTGCTGA+GGG - Chr1:80239411-80239430 MsG0180004603.01.T01:intron 50.0%
TACAAACCCGTGCTTTGCAC+GGG - Chr1:80239993-80240012 MsG0180004603.01.T01:intron 50.0%
TACCGAATTGCCCCTCATAG+GGG - Chr1:80246172-80246191 MsG0180004603.01.T01:five_prime_UTR 50.0%
TGCTTCTACACTGCCGTTGT+GGG + Chr1:80245008-80245027 None:intergenic 50.0%
TTGCTCTTTCGGCGGTAATG+AGG - Chr1:80240646-80240665 MsG0180004603.01.T01:intron 50.0%
TTGCTTCTACACTGCCGTTG+TGG + Chr1:80245009-80245028 None:intergenic 50.0%
! GAACGTGTGATGGAAGAAGG+TGG + Chr1:80240582-80240601 MsG0180004604.01.T01:intron 50.0%
! TGGTGCTAATCCTTCTGCTG+AGG - Chr1:80239410-80239429 MsG0180004603.01.T01:intron 50.0%
!! GCTTTGGGAAGTGGAAGGAA+AGG - Chr1:80239232-80239251 MsG0180004603.01.T01:intron 50.0%
!! GGAATGCTTTGGGAAGTGGA+AGG - Chr1:80239227-80239246 MsG0180004603.01.T01:intron 50.0%
!! TCCATAGCTTGCTCTTTCGG+CGG - Chr1:80240638-80240657 MsG0180004603.01.T01:intron 50.0%
ACCGCCGAAAGAGCAAGCTA+TGG + Chr1:80240642-80240661 MsG0180004604.01.T01:intron 55.0%
GCCCCTCATAGGGGCAAAAT+TGG - Chr1:80246181-80246200 MsG0180004603.01.T01:five_prime_UTR 55.0%
GCTAATCCTTCTGCTGAGGG+TGG - Chr1:80239414-80239433 MsG0180004603.01.T01:intron 55.0%
TGCCCCTATGAGGGGCAATT+CGG + Chr1:80246177-80246196 None:intergenic 55.0%
! GGGGAGAGCATGCATGATGA+TGG - Chr1:80239780-80239799 MsG0180004603.01.T01:intron 55.0%
! GTGGGTTGTTCAAGGAGCAG+TGG - Chr1:80239377-80239396 MsG0180004603.01.T01:intron 55.0%
ACATTGGCCCAAGTCGGGAC+CGG + Chr1:80242796-80242815 None:intergenic 60.0%
GAGGGTGGAGACGAGGATGA+TGG - Chr1:80239429-80239448 MsG0180004603.01.T01:intron 60.0%
TCGTCTCCACCCTCAGCAGA+AGG + Chr1:80239423-80239442 MsG0180004604.01.T01:intron 60.0%
TTCTGCTGAGGGTGGAGACG+AGG - Chr1:80239422-80239441 MsG0180004603.01.T01:intron 60.0%
CAAGTCCGGGGTTCGAACCC+TGG + Chr1:80243772-80243791 None:intergenic 65.0%
CAGGGTTCGAACCCCGGACT+TGG - Chr1:80243770-80243789 MsG0180004603.01.T01:intron 65.0%
GGTGTCCAGGGTTCGAACCC+CGG - Chr1:80243764-80243783 MsG0180004603.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 80238335 80246287 80238335 ID=MsG0180004603.01;Name=MsG0180004603.01
Chr1 mRNA 80238335 80246287 80238335 ID=MsG0180004603.01.T01;Parent=MsG0180004603.01;Name=MsG0180004603.01.T01;_AED=0.49;_eAED=0.49;_QI=182|1|1|1|0.5|0.4|5|142|168
Chr1 exon 80238335 80238380 80238335 ID=MsG0180004603.01.T01:exon:45869;Parent=MsG0180004603.01.T01
Chr1 exon 80244636 80244849 80244636 ID=MsG0180004603.01.T01:exon:45868;Parent=MsG0180004603.01.T01
Chr1 five_prime_UTR 80246106 80246287 80246106 ID=MsG0180004603.01.T01:five_prime_utr;Parent=MsG0180004603.01.T01
Chr1 CDS 80246078 80246105 80246078 ID=MsG0180004603.01.T01:cds;Parent=MsG0180004603.01.T01
Chr1 CDS 80245369 80245442 80245369 ID=MsG0180004603.01.T01:cds;Parent=MsG0180004603.01.T01
Chr1 CDS 80244958 80245244 80244958 ID=MsG0180004603.01.T01:cds;Parent=MsG0180004603.01.T01
Chr1 CDS 80244732 80244849 80244732 ID=MsG0180004603.01.T01:cds;Parent=MsG0180004603.01.T01
Chr1 three_prime_UTR 80244636 80244731 80244636 ID=MsG0180004603.01.T01:three_prime_utr;Parent=MsG0180004603.01.T01
Chr1 three_prime_UTR 80238335 80238380 80238335 ID=MsG0180004603.01.T01:three_prime_utr;Parent=MsG0180004603.01.T01
Chr1 mRNA 80244631 80246287 80244631 ID=MsG0180004603.01.T02;Parent=MsG0180004603.01;Name=MsG0180004603.01.T02;_AED=0.49;_eAED=0.49;_QI=182|1|1|1|0.66|0.75|4|101|168
Chr1 exon 80244631 80244849 80244631 ID=MsG0180004603.01.T02:exon:45870;Parent=MsG0180004603.01.T02
Chr1 five_prime_UTR 80246106 80246287 80246106 ID=MsG0180004603.01.T02:five_prime_utr;Parent=MsG0180004603.01.T02
Chr1 CDS 80246078 80246105 80246078 ID=MsG0180004603.01.T02:cds;Parent=MsG0180004603.01.T02
Chr1 CDS 80245369 80245442 80245369 ID=MsG0180004603.01.T02:cds;Parent=MsG0180004603.01.T02
Chr1 CDS 80244958 80245244 80244958 ID=MsG0180004603.01.T02:cds;Parent=MsG0180004603.01.T02
Chr1 CDS 80244732 80244849 80244732 ID=MsG0180004603.01.T02:cds;Parent=MsG0180004603.01.T02
Chr1 three_prime_UTR 80244631 80244731 80244631 ID=MsG0180004603.01.T02:three_prime_utr;Parent=MsG0180004603.01.T02
Gene Sequence

>MsG0180004603.01.T01

ATGCTTGTTTACCAGGATCTTCTTACAGGTGATGAGCTTCTCTCTGACTCATTCCCCTACAAGGAAATTGAGAATGGAATGCTTTGGGAAGTGGAAGGAAAGTGGGTTGTTCAAGGAGCAGTGGATGTGAATATTGGTGCTAATCCTTCTGCTGAGGGTGGAGACGAGGATGATGGTGTCGATGATCAAGCTGTCAAAGTGGTTGATATTGTTGACACTTTCAGGCTTCAGGAGCAACCAGCTTTTGATAAGAAGCAATTTGTTACTTATATGAAGAGATATATTAAGTTGCTGACATCTAAATTAGAGCCAGAAAAGCAAGAGTTGTTCAAGAAGCACATTGAAGCAGCAACTAAGTTCCTTCTCCCAAAACTCAAAGACCTACAATTTTTTGTTGGGGAGAGCATGCATGATGATGGAAGCCTTGTGTTTGCTTACTACAAGGATGGTGCCACTGATCCAACTTTTCTCTACTTTGCTTATGGCTTGAAGGAAATCAAGTGTTAA

>MsG0180004603.01.T02

ATGCTTGTTTACCAGGATCTTCTTACAGGTGATGAGCTTCTCTCTGACTCATTCCCCTACAAGGAAATTGAGAATGGAATGCTTTGGGAAGTGGAAGGAAAGTGGGTTGTTCAAGGAGCAGTGGATGTGAATATTGGTGCTAATCCTTCTGCTGAGGGTGGAGACGAGGATGATGGTGTCGATGATCAAGCTGTCAAAGTGGTTGATATTGTTGACACTTTCAGGCTTCAGGAGCAACCAGCTTTTGATAAGAAGCAATTTGTTACTTATATGAAGAGATATATTAAGTTGCTGACATCTAAATTAGAGCCAGAAAAGCAAGAGTTGTTCAAGAAGCACATTGAAGCAGCAACTAAGTTCCTTCTCCCAAAACTCAAAGACCTACAATTTTTTGTTGGGGAGAGCATGCATGATGATGGAAGCCTTGTGTTTGCTTACTACAAGGATGGTGCCACTGATCCAACTTTTCTCTACTTTGCTTATGGCTTGAAGGAAATCAAGTGTTAA
Protein sequence

>MsG0180004603.01.T01

MLVYQDLLTGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVNIGANPSAEGGDEDDGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRYIKLLTSKLEPEKQELFKKHIEAATKFLLPKLKDLQFFVGESMHDDGSLVFAYYKDGATDPTFLYFAYGLKEIKC*

>MsG0180004603.01.T02

MLVYQDLLTGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVNIGANPSAEGGDEDDGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRYIKLLTSKLEPEKQELFKKHIEAATKFLLPKLKDLQFFVGESMHDDGSLVFAYYKDGATDPTFLYFAYGLKEIKC*