AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024458.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024458.01.T01 MTR_5g011440 93.333 390 21 1 3 392 26 410 0.0 676
MsG0580024458.01.T01 MTR_5g011440 93.247 385 21 1 3 387 26 405 0.0 668
MsG0580024458.01.T01 MTR_5g011440 93.247 385 21 1 3 387 19 398 0.0 667
MsG0580024458.01.T01 MTR_5g011450 80.263 304 60 0 84 387 1 304 4.64e-176 493
MsG0580024458.01.T01 MTR_7g053090 40.956 293 159 5 99 388 97 378 2.75e-58 196
MsG0580024458.01.T01 MTR_4g113090 35.889 287 173 5 93 379 97 372 3.35e-50 174
MsG0580024458.01.T01 MTR_2g073190 32.982 285 181 4 103 387 382 656 2.79e-37 143
MsG0580024458.01.T01 MTR_2g073070 38.614 202 118 3 186 387 20 215 2.66e-33 125
MsG0580024458.01.T01 MTR_2g078500 66.265 83 27 1 127 209 37 118 1.11e-30 114
MsG0580024458.01.T01 MTR_2g078490 66.667 66 21 1 126 191 342 406 1.58e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024458.01.T01 AT4G22840 62.360 356 126 4 38 387 33 386 1.17e-151 435
MsG0580024458.01.T01 AT4G12030 58.516 364 145 2 29 387 25 387 8.54e-144 415
MsG0580024458.01.T01 AT4G12030 65.541 296 102 0 92 387 1 296 1.70e-140 403
MsG0580024458.01.T01 AT4G12030 67.194 253 83 0 135 387 1 253 4.87e-121 352
MsG0580024458.01.T01 AT4G12030 67.194 253 83 0 135 387 1 253 4.87e-121 352
MsG0580024458.01.T01 AT4G12030 67.194 253 83 0 135 387 1 253 4.87e-121 352
MsG0580024458.01.T01 AT3G25410 40.288 278 157 4 99 375 112 381 2.94e-57 193
MsG0580024458.01.T01 AT2G26900 33.240 358 212 9 23 379 40 371 3.87e-52 179
MsG0580024458.01.T01 AT1G78560 30.319 376 233 8 13 387 29 376 1.34e-41 151

Find 104 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTTAATGGTGCCATTTC+TGG 0.049187 5:-5191266 None:intergenic
GTGCCGTTTGGTTTGATTTC+TGG 0.064589 5:+5189420 MsG0580024458.01.T01:five_prime_UTR
GAAATTGCCACCGGTTATTT+TGG 0.187409 5:+5190905 MsG0580024458.01.T01:CDS
AGATACTTTGCACCTGCATT+AGG 0.277137 5:+5190812 MsG0580024458.01.T01:intron
TTTGTTGTGAAGCCTCTTCT+TGG 0.285277 5:+5190932 MsG0580024458.01.T01:CDS
CTCTTATTGCTGTTGCTCAT+TGG 0.303192 5:+5191335 MsG0580024458.01.T01:CDS
TGCTTAATGGTGCCATTTCT+GGG 0.316909 5:-5191265 None:intergenic
TCTTATTGCTGTTGCTCATT+GGG 0.328607 5:+5191336 MsG0580024458.01.T01:CDS
ACTTCATTGAGGCATTTAAT+AGG 0.332847 5:+5190876 MsG0580024458.01.T01:CDS
AGAAGCTGCATACTAATATT+AGG 0.341587 5:-5189637 None:intergenic
GGGTATGCCTCCTGCAATTT+CGG 0.354537 5:+5191938 MsG0580024458.01.T01:CDS
TATTGGAGTCTAATCAGAAT+TGG 0.356676 5:-5191968 None:intergenic
GCCTCCACTCTCTGTGTTGA+CGG 0.357086 5:+5191585 MsG0580024458.01.T01:CDS
TTTGGTCTACCAACAGGAAT+AGG 0.363194 5:+5190986 MsG0580024458.01.T01:CDS
TGGGAATTTACCGAAATTGC+AGG 0.366222 5:-5191948 None:intergenic
GATGTCATTACTATGCTTAA+TGG 0.367163 5:-5191278 None:intergenic
GTATTGGTGGCTTGTGTTAG+TGG 0.378566 5:+5191206 MsG0580024458.01.T01:CDS
CGAATAGCATTGCAAATAGA+AGG 0.386081 5:-5191553 None:intergenic
CGTTGTAGTGGCTTTACATC+AGG 0.390378 5:-5191757 None:intergenic
GAATGATTCGGTGTCGGGTC+GGG 0.403998 5:-5189814 None:intergenic
GATACTTTGCACCTGCATTA+GGG 0.410007 5:+5190813 MsG0580024458.01.T01:intron
AACAAACTGGCCAAAATAAC+CGG 0.410009 5:-5190915 None:intergenic
AGACTGCCTATAGATGTAAA+AGG 0.415361 5:+5191362 MsG0580024458.01.T01:CDS
TAGACGGAAGAGTGATGATT+GGG 0.419992 5:-5189542 None:intergenic
AGTGTACTAGCAACGATTGC+AGG 0.421902 5:-5190446 None:intergenic
AGCACATTTCAGAGGAAGTC+TGG 0.422299 5:-5189758 None:intergenic
GAGAAGAATGATTCGGTGTC+GGG 0.431370 5:-5189819 None:intergenic
ATTGGAGTCTAATCAGAATT+GGG 0.452490 5:-5191967 None:intergenic
TTCTTTGAAGATCCAGTTGT+GGG 0.455510 5:+5191918 MsG0580024458.01.T01:CDS
GCAGGAGGCATACCCACAAC+TGG 0.468143 5:-5191930 None:intergenic
CGAACAATTTCCTTTGAGAC+AGG 0.468727 5:+5191778 MsG0580024458.01.T01:CDS
AAAGGAAGTCCCGTGCCGTT+TGG 0.469316 5:+5189408 MsG0580024458.01.T01:five_prime_UTR
CTGTTGGCCTGCTTCTAAAT+CGG 0.471373 5:+5191426 MsG0580024458.01.T01:CDS
CATTAGCGTCGTACAGTGGT+GGG 0.481741 5:-5189844 None:intergenic
CATTTCTCACCTATTCCTGT+TGG 0.482415 5:-5190995 None:intergenic
TGGGGTCAATTCAAGTGAAA+AGG 0.486568 5:+5190853 MsG0580024458.01.T01:CDS
AAGGAAATTGTTCGTTGTAG+TGG 0.486811 5:-5191769 None:intergenic
AGTTCTACCGATTTAGAAGC+AGG 0.487761 5:-5191433 None:intergenic
GAAGAGGCTTCACAACAAAC+TGG 0.490918 5:-5190928 None:intergenic
GTAGACGGAAGAGTGATGAT+TGG 0.492725 5:-5189543 None:intergenic
AGAACTTATTAGCAAGAGCC+AGG 0.498898 5:-5191899 None:intergenic
CATCTTCATCTTCATCACTC+TGG 0.499592 5:-5189512 None:intergenic
TTGACGGCAGCTATCTGTGC+TGG 0.506226 5:+5191601 MsG0580024458.01.T01:CDS
GCAAAGTAGCCTCCTTGCCC+TGG 0.511629 5:+5191881 MsG0580024458.01.T01:CDS
ATCAGGCGCAGGGATGGTAT+TGG 0.520885 5:+5191190 MsG0580024458.01.T01:intron
ATAGCTGGCTATATGCTAAG+TGG 0.521600 5:+5191715 MsG0580024458.01.T01:CDS
AAAATAAAAGAAGTGTAGGA+TGG 0.524878 5:+5189347 MsG0580024458.01.T01:five_prime_UTR
CTTTGACGTGGTTTACAACA+AGG 0.528253 5:+5190492 MsG0580024458.01.T01:CDS
GCAACAAAATAGAAATTCCA+AGG 0.528862 5:-5191663 None:intergenic
CGGGTCGGGTTGGTGAGAAT+CGG 0.531942 5:-5189800 None:intergenic
GATTCGGTGTCGGGTCGGGT+TGG 0.538982 5:-5189810 None:intergenic
AGAATGATTCGGTGTCGGGT+CGG 0.540212 5:-5189815 None:intergenic
GTTGTAAACCACGTCAAAGA+AGG 0.542670 5:-5190488 None:intergenic
GTGGTGCTAGGATAATAAAA+AGG 0.543398 5:+5189378 MsG0580024458.01.T01:five_prime_UTR
GGTGGGAAGTTTGAATGCAA+AGG 0.543981 5:-5189616 None:intergenic
TAAAACAGATATCCAAGAAG+AGG 0.547296 5:-5190944 None:intergenic
TAACCGGTGGCAATTTCTGC+CGG 0.547664 5:-5190899 None:intergenic
CATTGAGGCATTTAATAGGC+CGG 0.551828 5:+5190880 MsG0580024458.01.T01:CDS
GCCTATAGATGTAAAAGGAA+TGG 0.557062 5:+5191367 MsG0580024458.01.T01:CDS
CACTCAACATTAAGAGCAAG+TGG 0.559150 5:-5191628 None:intergenic
TGAGAAGAATGATTCGGTGT+CGG 0.559195 5:-5189820 None:intergenic
TGAATGCAAAGGAATTGAGA+AGG 0.560009 5:-5189605 None:intergenic
GTGAGAATCGGAGAAGTTCG+TGG 0.561447 5:-5189788 None:intergenic
AGGCGCAGGGATGGTATTGG+TGG 0.562527 5:+5191193 MsG0580024458.01.T01:intron
AAAACGTGCACCTGTCTCAA+AGG 0.564195 5:-5191788 None:intergenic
GAAATCAAACCAAACGGCAC+GGG 0.567282 5:-5189417 None:intergenic
GTGGTGGTACCTATCGCTGT+TGG 0.570249 5:+5191410 MsG0580024458.01.T01:CDS
AGAAGCAGGCCAACAGCGAT+AGG 0.572011 5:-5191419 None:intergenic
TCTCCAGAAATCAAACCAAA+CGG 0.573150 5:-5189423 None:intergenic
GTTCTTTGAAGATCCAGTTG+TGG 0.577808 5:+5191917 MsG0580024458.01.T01:CDS
TCATTAGCGTCGTACAGTGG+TGG 0.578045 5:-5189845 None:intergenic
AAATGAATCAGGCGCAGGGA+TGG 0.579253 5:+5191184 MsG0580024458.01.T01:intron
TATAAAAGCTGACAAATGAA+AGG 0.582419 5:-5191695 None:intergenic
GTGTAGGATGGAAGTGTGAG+TGG 0.584009 5:+5189359 MsG0580024458.01.T01:five_prime_UTR
GTTTAGCATTACGCAGATTG+TGG 0.584235 5:+5191391 MsG0580024458.01.T01:CDS
TGCAGTTGCAGTATCGTAGA+CGG 0.584484 5:-5189558 None:intergenic
GTGGGGTGAGAAGAATGATT+CGG 0.586579 5:-5189826 None:intergenic
TATTAGCAAGAGCCAGGGCA+AGG 0.598341 5:-5191893 None:intergenic
AGCTGCATACTAATATTAGG+TGG 0.598399 5:-5189634 None:intergenic
AAGTGAAAAGGACTTCATTG+AGG 0.599086 5:+5190865 MsG0580024458.01.T01:CDS
GAGTGTATTAAATCTCCCCT+TGG 0.603743 5:+5191646 MsG0580024458.01.T01:CDS
GCTGCCGTCAACACAGAGAG+TGG 0.603946 5:-5191589 None:intergenic
GTAAACCACGTCAAAGAAGG+TGG 0.605538 5:-5190485 None:intergenic
CAACAAAATAGAAATTCCAA+GGG 0.607845 5:-5191662 None:intergenic
ATGGAAGTGTGAGTGGTGCT+AGG 0.612389 5:+5189366 MsG0580024458.01.T01:five_prime_UTR
TCTTCCCACCTTCTTTGACG+TGG 0.620489 5:+5190480 MsG0580024458.01.T01:CDS
AGAAATCAAACCAAACGGCA+CGG 0.622932 5:-5189418 None:intergenic
GCTGCATACTAATATTAGGT+GGG 0.627684 5:-5189633 None:intergenic
ATTAGCGTCGTACAGTGGTG+GGG 0.636150 5:-5189843 None:intergenic
GATGAAGCAGCACATTTCAG+AGG 0.638965 5:-5189766 None:intergenic
GGTGAAATGAATCAGGCGCA+GGG 0.644484 5:+5191180 MsG0580024458.01.T01:intron
TAGCATTACGCAGATTGTGG+TGG 0.646497 5:+5191394 MsG0580024458.01.T01:CDS
GAACTTATTAGCAAGAGCCA+GGG 0.647822 5:-5191898 None:intergenic
TAAACCACGTCAAAGAAGGT+GGG 0.655452 5:-5190484 None:intergenic
GAATTTACCGAAATTGCAGG+AGG 0.656389 5:-5191945 None:intergenic
TAGCAAGAGCCAGGGCAAGG+AGG 0.657437 5:-5191890 None:intergenic
ATGAGCAACAGCAATAAGAG+TGG 0.677617 5:-5191332 None:intergenic
AGACGGAAGAGTGATGATTG+GGG 0.677990 5:-5189541 None:intergenic
AGGCCGGCAGAAATTGCCAC+CGG 0.679014 5:+5190896 MsG0580024458.01.T01:CDS
GCCGTCAACACAGAGAGTGG+AGG 0.680225 5:-5191586 None:intergenic
GTACTAGCAACGATTGCAGG+AGG 0.690202 5:-5190443 None:intergenic
AAACTGGCCAAAATAACCGG+TGG 0.696617 5:-5190912 None:intergenic
GCTTTACATCAGGAGAATCG+CGG 0.699620 5:-5191747 None:intergenic
AACAAAATAGAAATTCCAAG+GGG 0.719925 5:-5191661 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAGTAATTATAAATTCA+TGG - Chr5:5190781-5190800 None:intergenic 15.0%
!! ATAAAAAATTAACCAAGTTA+AGG - Chr5:5190172-5190191 None:intergenic 15.0%
!! ATCATAAAACAATATGTTAT+CGG - Chr5:5190547-5190566 None:intergenic 15.0%
!!! ATATACTTTCTAATTTTTTG+AGG + Chr5:5191159-5191178 MsG0580024458.01.T01:intron 15.0%
!!! CTTAAAATTATCTTTTGTTA+TGG + Chr5:5190110-5190129 MsG0580024458.01.T01:intron 15.0%
!!! TAATAAAAAGGAGTTTTAAA+AGG + Chr5:5189390-5189409 MsG0580024458.01.T01:five_prime_UTR 15.0%
!! AGAGTTACTTAAATAACATA+TGG - Chr5:5191844-5191863 None:intergenic 20.0%
!! AGTATTATTGTTTCCTTTAA+GGG + Chr5:5191484-5191503 MsG0580024458.01.T01:intron 20.0%
!! TCTTAATTAGCATGAATTAA+GGG + Chr5:5189915-5189934 MsG0580024458.01.T01:intron 20.0%
!! TTCTTAATTAGCATGAATTA+AGG + Chr5:5189914-5189933 MsG0580024458.01.T01:intron 20.0%
!!! AACAAAAATAAAAGAAGTGT+AGG + Chr5:5189343-5189362 MsG0580024458.01.T01:five_prime_UTR 20.0%
!!! TATATTTTCATTCTAATACG+AGG - Chr5:5189887-5189906 None:intergenic 20.0%
! AAAGAACTAATCCAGAAAAA+CGG - Chr5:5191077-5191096 None:intergenic 25.0%
! AACAAAATAGAAATTCCAAG+GGG - Chr5:5191664-5191683 None:intergenic 25.0%
! ATAATTACTATGTGATGTAC+TGG + Chr5:5190788-5190807 MsG0580024458.01.T01:intron 25.0%
! ATATTATAAAGAGAGCTAGT+TGG + Chr5:5191136-5191155 MsG0580024458.01.T01:intron 25.0%
! CAACAAAATAGAAATTCCAA+GGG - Chr5:5191665-5191684 None:intergenic 25.0%
! CAGTATTATTGTTTCCTTTA+AGG + Chr5:5191483-5191502 MsG0580024458.01.T01:intron 25.0%
! TATAAAAGCTGACAAATGAA+AGG - Chr5:5191698-5191717 None:intergenic 25.0%
! TTACTTAAATAACATATGGC+AGG - Chr5:5191840-5191859 None:intergenic 25.0%
! TTTAAACTGCAAATGCAAAA+TGG + Chr5:5190668-5190687 MsG0580024458.01.T01:intron 25.0%
!! AAAATAAAAGAAGTGTAGGA+TGG + Chr5:5189347-5189366 MsG0580024458.01.T01:five_prime_UTR 25.0%
!! ATTATTGCAGTAACTGTTTT+TGG + Chr5:5190968-5190987 MsG0580024458.01.T01:CDS 25.0%
!! ATTTGTTTGATGGATGAAAA+TGG - Chr5:5191816-5191835 None:intergenic 25.0%
AATAGACAAAATTTCGTCTG+TGG + Chr5:5191037-5191056 MsG0580024458.01.T01:intron 30.0%
AATTAACCAAGTTAAGGCTT+TGG - Chr5:5190166-5190185 None:intergenic 30.0%
AGAAAAACGGTCAAACTTAA+AGG - Chr5:5191064-5191083 None:intergenic 30.0%
AGAAGCTGCATACTAATATT+AGG - Chr5:5189640-5189659 None:intergenic 30.0%
GAAAAACGGTCAAACTTAAA+GGG - Chr5:5191063-5191082 None:intergenic 30.0%
GATGTCATTACTATGCTTAA+TGG - Chr5:5191281-5191300 None:intergenic 30.0%
GCAACAAAATAGAAATTCCA+AGG - Chr5:5191666-5191685 None:intergenic 30.0%
TAAAACAGATATCCAAGAAG+AGG - Chr5:5190947-5190966 None:intergenic 30.0%
TTTCGTCAAATTTATGCCTT+CGG - Chr5:5191114-5191133 None:intergenic 30.0%
! ACCATTCCTTTTACATCTAT+AGG - Chr5:5191371-5191390 None:intergenic 30.0%
! ACTTCATTGAGGCATTTAAT+AGG + Chr5:5190876-5190895 MsG0580024458.01.T01:CDS 30.0%
! TATTTTCTGGATGAATTGGT+AGG + Chr5:5190521-5190540 MsG0580024458.01.T01:intron 30.0%
! TGTGTATTTTCTGGATGAAT+TGG + Chr5:5190517-5190536 MsG0580024458.01.T01:intron 30.0%
!! TTTAAGTTTGACCGTTTTTC+TGG + Chr5:5191063-5191082 MsG0580024458.01.T01:intron 30.0%
!!! CTGTGCTTTTTTTTTCAGTT+CGG + Chr5:5189716-5189735 MsG0580024458.01.T01:intron 30.0%
!!! TTTTTGAGGTGAAATGAATC+AGG + Chr5:5191173-5191192 MsG0580024458.01.T01:intron 30.0%
AACAAACTGGCCAAAATAAC+CGG - Chr5:5190918-5190937 None:intergenic 35.0%
AACATCAAAAACCCTAATGC+AGG - Chr5:5190827-5190846 None:intergenic 35.0%
AAGGAAATTGTTCGTTGTAG+TGG - Chr5:5191772-5191791 None:intergenic 35.0%
AAGTGAAAAGGACTTCATTG+AGG + Chr5:5190865-5190884 MsG0580024458.01.T01:CDS 35.0%
AATCAAAAACCAAGTAACGC+AGG + Chr5:5190323-5190342 MsG0580024458.01.T01:intron 35.0%
ACAGAACATTCTAGATGACT+AGG - Chr5:5190640-5190659 None:intergenic 35.0%
AGACTGCCTATAGATGTAAA+AGG + Chr5:5191362-5191381 MsG0580024458.01.T01:CDS 35.0%
AGCTGCATACTAATATTAGG+TGG - Chr5:5189637-5189656 None:intergenic 35.0%
CGAATAGCATTGCAAATAGA+AGG - Chr5:5191556-5191575 None:intergenic 35.0%
GAATAGGTGAGAAATGAGAA+TGG + Chr5:5191002-5191021 MsG0580024458.01.T01:intron 35.0%
GCCTATAGATGTAAAAGGAA+TGG + Chr5:5191367-5191386 MsG0580024458.01.T01:CDS 35.0%
GCTGCATACTAATATTAGGT+GGG - Chr5:5189636-5189655 None:intergenic 35.0%
TCTCCAGAAATCAAACCAAA+CGG - Chr5:5189426-5189445 None:intergenic 35.0%
TGAATGCAAAGGAATTGAGA+AGG - Chr5:5189608-5189627 None:intergenic 35.0%
TTAAATTTCTAACCGACCGA+AGG + Chr5:5191095-5191114 MsG0580024458.01.T01:intron 35.0%
TTTACACCAAAGCCTTAACT+TGG + Chr5:5190157-5190176 MsG0580024458.01.T01:intron 35.0%
! AACAAGGTCTGTGTATTTTC+TGG + Chr5:5190508-5190527 MsG0580024458.01.T01:intron 35.0%
! CATTTGTCAGCTTTTATAGC+TGG + Chr5:5191700-5191719 MsG0580024458.01.T01:CDS 35.0%
! GGTTTTTGATGTTTGCAGTT+GGG + Chr5:5190834-5190853 MsG0580024458.01.T01:CDS 35.0%
! GTGGTGCTAGGATAATAAAA+AGG + Chr5:5189378-5189397 MsG0580024458.01.T01:five_prime_UTR 35.0%
! GTTTTTGATGTTTGCAGTTG+GGG + Chr5:5190835-5190854 MsG0580024458.01.T01:CDS 35.0%
! TCTTATTGCTGTTGCTCATT+GGG + Chr5:5191336-5191355 MsG0580024458.01.T01:CDS 35.0%
! TTCTTTGAAGATCCAGTTGT+GGG + Chr5:5191918-5191937 MsG0580024458.01.T01:CDS 35.0%
! TTTTCTAACAGACCCAGAAA+TGG + Chr5:5191253-5191272 MsG0580024458.01.T01:CDS 35.0%
!! TAAGCTGTTTTCGTAAGTTG+TGG - Chr5:5189998-5190017 None:intergenic 35.0%
!!! GCTTTTTTTTTCAGTTCGGT+TGG + Chr5:5189720-5189739 MsG0580024458.01.T01:intron 35.0%
!!! TTTTTTTTCAGTTCGGTTGG+CGG + Chr5:5189723-5189742 MsG0580024458.01.T01:intron 35.0%
AGAAATCAAACCAAACGGCA+CGG - Chr5:5189421-5189440 None:intergenic 40.0%
AGAACTTATTAGCAAGAGCC+AGG - Chr5:5191902-5191921 None:intergenic 40.0%
AGATACTTTGCACCTGCATT+AGG + Chr5:5190812-5190831 MsG0580024458.01.T01:intron 40.0%
AGTGCTTATGTGTTCAGGTA+AGG + Chr5:5190217-5190236 MsG0580024458.01.T01:intron 40.0%
ATAGCTGGCTATATGCTAAG+TGG + Chr5:5191715-5191734 MsG0580024458.01.T01:CDS 40.0%
ATGAGCAACAGCAATAAGAG+TGG - Chr5:5191335-5191354 None:intergenic 40.0%
CAAGAAGACAACACCCTTAA+AGG - Chr5:5191500-5191519 None:intergenic 40.0%
CACTCAACATTAAGAGCAAG+TGG - Chr5:5191631-5191650 None:intergenic 40.0%
CATCTTCATCTTCATCACTC+TGG - Chr5:5189515-5189534 None:intergenic 40.0%
CATTTCTCACCTATTCCTGT+TGG - Chr5:5190998-5191017 None:intergenic 40.0%
CTTTGACGTGGTTTACAACA+AGG + Chr5:5190492-5190511 MsG0580024458.01.T01:CDS 40.0%
GAACTTATTAGCAAGAGCCA+GGG - Chr5:5191901-5191920 None:intergenic 40.0%
GAATTTACCGAAATTGCAGG+AGG - Chr5:5191948-5191967 None:intergenic 40.0%
GAGTAAGTGCTTATGTGTTC+AGG + Chr5:5190212-5190231 MsG0580024458.01.T01:intron 40.0%
GAGTGTATTAAATCTCCCCT+TGG + Chr5:5191646-5191665 MsG0580024458.01.T01:CDS 40.0%
GATACTTTGCACCTGCATTA+GGG + Chr5:5190813-5190832 MsG0580024458.01.T01:intron 40.0%
GTCAAATTTATGCCTTCGGT+CGG - Chr5:5191110-5191129 None:intergenic 40.0%
GTTGTAAACCACGTCAAAGA+AGG - Chr5:5190491-5190510 None:intergenic 40.0%
GTTTAGCATTACGCAGATTG+TGG + Chr5:5191391-5191410 MsG0580024458.01.T01:CDS 40.0%
GTTTCATTTCTTTCCTCAGC+TGG + Chr5:5190364-5190383 MsG0580024458.01.T01:intron 40.0%
TAAACCACGTCAAAGAAGGT+GGG - Chr5:5190487-5190506 None:intergenic 40.0%
TAGACGGAAGAGTGATGATT+GGG - Chr5:5189545-5189564 None:intergenic 40.0%
TATGGCAGGCATTTGTTTGA+TGG - Chr5:5191826-5191845 None:intergenic 40.0%
TGGGAATTTACCGAAATTGC+AGG - Chr5:5191951-5191970 None:intergenic 40.0%
TGGGGTCAATTCAAGTGAAA+AGG + Chr5:5190853-5190872 MsG0580024458.01.T01:CDS 40.0%
TTTGGTCTACCAACAGGAAT+AGG + Chr5:5190986-5191005 MsG0580024458.01.T01:CDS 40.0%
! AAGGCTTTGGTGTAAAATGC+AGG - Chr5:5190153-5190172 None:intergenic 40.0%
! ACGCAGGACATGATTGTTTT+TGG + Chr5:5190339-5190358 MsG0580024458.01.T01:intron 40.0%
! CATTGAGGCATTTAATAGGC+CGG + Chr5:5190880-5190899 MsG0580024458.01.T01:CDS 40.0%
! CTCTTATTGCTGTTGCTCAT+TGG + Chr5:5191335-5191354 MsG0580024458.01.T01:CDS 40.0%
! GGGTTTTTGATGTTTGCAGT+TGG + Chr5:5190833-5190852 MsG0580024458.01.T01:CDS 40.0%
! GTTCTTTGAAGATCCAGTTG+TGG + Chr5:5191917-5191936 MsG0580024458.01.T01:CDS 40.0%
! TTTGTTGTGAAGCCTCTTCT+TGG + Chr5:5190932-5190951 MsG0580024458.01.T01:CDS 40.0%
!! AGTTCTACCGATTTAGAAGC+AGG - Chr5:5191436-5191455 None:intergenic 40.0%
!! ATGCTTAATGGTGCCATTTC+TGG - Chr5:5191269-5191288 None:intergenic 40.0%
!! CGAACAATTTCCTTTGAGAC+AGG + Chr5:5191778-5191797 MsG0580024458.01.T01:CDS 40.0%
!! GAAATTGCCACCGGTTATTT+TGG + Chr5:5190905-5190924 MsG0580024458.01.T01:CDS 40.0%
!! TGAGAAGAATGATTCGGTGT+CGG - Chr5:5189823-5189842 None:intergenic 40.0%
!! TGCTTAATGGTGCCATTTCT+GGG - Chr5:5191268-5191287 None:intergenic 40.0%
!!! ACTGTTTTTGGTCTACCAAC+AGG + Chr5:5190980-5190999 MsG0580024458.01.T01:CDS 40.0%
AAAACGTGCACCTGTCTCAA+AGG - Chr5:5191791-5191810 None:intergenic 45.0%
AAACTGGCCAAAATAACCGG+TGG - Chr5:5190915-5190934 None:intergenic 45.0%
AAACTTTGCTTCACCAGCTG+AGG - Chr5:5190380-5190399 None:intergenic 45.0%
ACAGAGAGTGGAGGCAAAAA+TGG - Chr5:5191580-5191599 None:intergenic 45.0%
AGACGGAAGAGTGATGATTG+GGG - Chr5:5189544-5189563 None:intergenic 45.0%
AGCACATTTCAGAGGAAGTC+TGG - Chr5:5189761-5189780 None:intergenic 45.0%
AGTAACTCTTCTCCAACTGC+AGG + Chr5:5191855-5191874 MsG0580024458.01.T01:intron 45.0%
AGTGTACTAGCAACGATTGC+AGG - Chr5:5190449-5190468 None:intergenic 45.0%
CAATCATGTCCTGCGTTACT+TGG - Chr5:5190335-5190354 None:intergenic 45.0%
CTACTTTGCATTCCTGCAGT+TGG - Chr5:5191870-5191889 None:intergenic 45.0%
GAAATCAAACCAAACGGCAC+GGG - Chr5:5189420-5189439 None:intergenic 45.0%
GAAGAGGCTTCACAACAAAC+TGG - Chr5:5190931-5190950 None:intergenic 45.0%
GATGAAGCAGCACATTTCAG+AGG - Chr5:5189769-5189788 None:intergenic 45.0%
GCTTTACATCAGGAGAATCG+CGG - Chr5:5191750-5191769 None:intergenic 45.0%
GGTGGGAAGTTTGAATGCAA+AGG - Chr5:5189619-5189638 None:intergenic 45.0%
GTAAACCACGTCAAAGAAGG+TGG - Chr5:5190488-5190507 None:intergenic 45.0%
GTAGACGGAAGAGTGATGAT+TGG - Chr5:5189546-5189565 None:intergenic 45.0%
GTGGGGTGAGAAGAATGATT+CGG - Chr5:5189829-5189848 None:intergenic 45.0%
TAGCATTACGCAGATTGTGG+TGG + Chr5:5191394-5191413 MsG0580024458.01.T01:CDS 45.0%
TGATCATTAGCGTCGTACAG+TGG - Chr5:5189851-5189870 None:intergenic 45.0%
TGCAGTTGCAGTATCGTAGA+CGG - Chr5:5189561-5189580 None:intergenic 45.0%
! CGTTGTAGTGGCTTTACATC+AGG - Chr5:5191760-5191779 None:intergenic 45.0%
! CTGTTGGCCTGCTTCTAAAT+CGG + Chr5:5191426-5191445 MsG0580024458.01.T01:CDS 45.0%
! GTATTGGTGGCTTGTGTTAG+TGG + Chr5:5191206-5191225 MsG0580024458.01.T01:CDS 45.0%
!! GAGAAGAATGATTCGGTGTC+GGG - Chr5:5189822-5189841 None:intergenic 45.0%
!! GTGCCGTTTGGTTTGATTTC+TGG + Chr5:5189420-5189439 MsG0580024458.01.T01:five_prime_UTR 45.0%
AAATGAATCAGGCGCAGGGA+TGG + Chr5:5191184-5191203 MsG0580024458.01.T01:intron 50.0%
AGGTGAAATGAATCAGGCGC+AGG + Chr5:5191179-5191198 MsG0580024458.01.T01:intron 50.0%
ATTAGCGTCGTACAGTGGTG+GGG - Chr5:5189846-5189865 None:intergenic 50.0%
CATTAGCGTCGTACAGTGGT+GGG - Chr5:5189847-5189866 None:intergenic 50.0%
GGGTATGCCTCCTGCAATTT+CGG + Chr5:5191938-5191957 MsG0580024458.01.T01:CDS 50.0%
GGTGAAATGAATCAGGCGCA+GGG + Chr5:5191180-5191199 MsG0580024458.01.T01:intron 50.0%
GTACTAGCAACGATTGCAGG+AGG - Chr5:5190446-5190465 None:intergenic 50.0%
GTGAGAATCGGAGAAGTTCG+TGG - Chr5:5189791-5189810 None:intergenic 50.0%
TAACCGGTGGCAATTTCTGC+CGG - Chr5:5190902-5190921 None:intergenic 50.0%
TATTAGCAAGAGCCAGGGCA+AGG - Chr5:5191896-5191915 None:intergenic 50.0%
TCATTAGCGTCGTACAGTGG+TGG - Chr5:5189848-5189867 None:intergenic 50.0%
TCTTCCCACCTTCTTTGACG+TGG + Chr5:5190480-5190499 MsG0580024458.01.T01:CDS 50.0%
! ATGGAAGTGTGAGTGGTGCT+AGG + Chr5:5189366-5189385 MsG0580024458.01.T01:five_prime_UTR 50.0%
! GTGTAGGATGGAAGTGTGAG+TGG + Chr5:5189359-5189378 MsG0580024458.01.T01:five_prime_UTR 50.0%
!! AGAATGATTCGGTGTCGGGT+CGG - Chr5:5189818-5189837 None:intergenic 50.0%
!! TTTTTCAGTTCGGTTGGCGG+TGG + Chr5:5189726-5189745 MsG0580024458.01.T01:intron 50.0%
AGAAGCAGGCCAACAGCGAT+AGG - Chr5:5191422-5191441 None:intergenic 55.0%
ATCAGGCGCAGGGATGGTAT+TGG + Chr5:5191190-5191209 MsG0580024458.01.T01:intron 55.0%
GCCTCCACTCTCTGTGTTGA+CGG + Chr5:5191585-5191604 MsG0580024458.01.T01:CDS 55.0%
GTGGTGGTACCTATCGCTGT+TGG + Chr5:5191410-5191429 MsG0580024458.01.T01:CDS 55.0%
TTGACGGCAGCTATCTGTGC+TGG + Chr5:5191601-5191620 MsG0580024458.01.T01:CDS 55.0%
! AAAGGAAGTCCCGTGCCGTT+TGG + Chr5:5189408-5189427 MsG0580024458.01.T01:five_prime_UTR 55.0%
!! GAATGATTCGGTGTCGGGTC+GGG - Chr5:5189817-5189836 None:intergenic 55.0%
AGGCCGGCAGAAATTGCCAC+CGG + Chr5:5190896-5190915 MsG0580024458.01.T01:CDS 60.0%
GCAAAGTAGCCTCCTTGCCC+TGG + Chr5:5191881-5191900 MsG0580024458.01.T01:CDS 60.0%
GCCGTCAACACAGAGAGTGG+AGG - Chr5:5191589-5191608 None:intergenic 60.0%
GCTGCCGTCAACACAGAGAG+TGG - Chr5:5191592-5191611 None:intergenic 60.0%
TAGCAAGAGCCAGGGCAAGG+AGG - Chr5:5191893-5191912 None:intergenic 60.0%
! AGGCGCAGGGATGGTATTGG+TGG + Chr5:5191193-5191212 MsG0580024458.01.T01:intron 60.0%
! GCAGGAGGCATACCCACAAC+TGG - Chr5:5191933-5191952 None:intergenic 60.0%
!! CGGGTCGGGTTGGTGAGAAT+CGG - Chr5:5189803-5189822 None:intergenic 60.0%
!! GATTCGGTGTCGGGTCGGGT+TGG - Chr5:5189813-5189832 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5189338 5191977 5189338 ID=MsG0580024458.01;Name=MsG0580024458.01
Chr5 mRNA 5189338 5191977 5189338 ID=MsG0580024458.01.T01;Parent=MsG0580024458.01;Name=MsG0580024458.01.T01;_AED=0.41;_eAED=0.41;_QI=182|1|0.85|1|0.5|0.57|7|0|392
Chr5 exon 5189338 5189646 5189338 ID=MsG0580024458.01.T01:exon:29067;Parent=MsG0580024458.01.T01
Chr5 exon 5189734 5189852 5189734 ID=MsG0580024458.01.T01:exon:29068;Parent=MsG0580024458.01.T01
Chr5 exon 5190383 5190513 5190383 ID=MsG0580024458.01.T01:exon:29069;Parent=MsG0580024458.01.T01
Chr5 exon 5190814 5191007 5190814 ID=MsG0580024458.01.T01:exon:29070;Parent=MsG0580024458.01.T01
Chr5 exon 5191195 5191447 5191195 ID=MsG0580024458.01.T01:exon:29071;Parent=MsG0580024458.01.T01
Chr5 exon 5191546 5191799 5191546 ID=MsG0580024458.01.T01:exon:29072;Parent=MsG0580024458.01.T01
Chr5 exon 5191877 5191977 5191877 ID=MsG0580024458.01.T01:exon:29073;Parent=MsG0580024458.01.T01
Chr5 five_prime_UTR 5189338 5189519 5189338 ID=MsG0580024458.01.T01:five_prime_utr;Parent=MsG0580024458.01.T01
Chr5 CDS 5189520 5189646 5189520 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Chr5 CDS 5189734 5189852 5189734 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Chr5 CDS 5190383 5190513 5190383 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Chr5 CDS 5190814 5191007 5190814 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Chr5 CDS 5191195 5191447 5191195 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Chr5 CDS 5191546 5191799 5191546 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Chr5 CDS 5191877 5191977 5191877 ID=MsG0580024458.01.T01:cds;Parent=MsG0580024458.01.T01
Gene Sequence

>MsG0580024458.01.T01

ATGAAGATGAAGATGACTCTTCCCCAATCATCACTCTTCCGTCTACGATACTGCAACTGCAACAACATCTCTTCATCTTCTTCTTCCTTCTCAATTCCTTTGCATTCAAACTTCCCACCTAATATTATTCGGTTGGCGGTGGTTTCGAGCTCCAGACTTCCTCTGAAATGTGCTGCTTCATCCACGAACTTCTCCGATTCTCACCAACCCGACCCGACACCGAATCATTCTTCTCACCCCACCACTCTGGTGAAGCAAAGTTTTCTGTCTATTTTAGAGATTCTGAAGAACTCAAATTCACTTCTGCCTCCTGCAATCGTTGCTAGTACACTGCTAGCTCTAATCTTCCCACCTTCTTTGACGTGGTTTACAACAAGATACTTTGCACCTGCATTAGGGTTTTTGATGTTTGCAGTTGGGGTCAATTCAAGTGAAAAGGACTTCATTGAGGCATTTAATAGGCCGGCAGAAATTGCCACCGGTTATTTTGGCCAGTTTGTTGTGAAGCCTCTTCTTGGATATCTGTTTTATATTATTGCAGTAACTGTTTTTGGTCTACCAACAGGAATAGGCGCAGGGATGGTATTGGTGGCTTGTGTTAGTGGAGCTCAGCTCTCAAATTATGCTACTTTTCTAACAGACCCAGAAATGGCACCATTAAGCATAGTAATGACATCATTGTCAACTGCTTCTGCTGTCTTTGTCACACCACTCTTATTGCTGTTGCTCATTGGGAAGAGACTGCCTATAGATGTAAAAGGAATGGTGTTTAGCATTACGCAGATTGTGGTGGTACCTATCGCTGTTGGCCTGCTTCTAAATCGCTTCTTTCCTTCTATTTGCAATGCTATTCGACCATTTTTGCCTCCACTCTCTGTGTTGACGGCAGCTATCTGTGCTGGAGCGCCACTTGCTCTTAATGTTGAGTGTATTAAATCTCCCCTTGGAATTTCTATTTTGTTGCTTGTTGTTGCCTTTCATTTGTCAGCTTTTATAGCTGGCTATATGCTAAGTGGATCTGTCTTCCGCGATTCTCCTGATGTAAAGCCACTACAACGAACAATTTCCTTTGAGACAGGAATGCAAAGTAGCCTCCTTGCCCTGGCTCTTGCTAATAAGTTCTTTGAAGATCCAGTTGTGGGTATGCCTCCTGCAATTTCGGTAAATTCCCAATTCTGA

Protein sequence

>MsG0580024458.01.T01

MKMKMTLPQSSLFRLRYCNCNNISSSSSSFSIPLHSNFPPNIIRLAVVSSSRLPLKCAASSTNFSDSHQPDPTPNHSSHPTTLVKQSFLSILEILKNSNSLLPPAIVASTLLALIFPPSLTWFTTRYFAPALGFLMFAVGVNSSEKDFIEAFNRPAEIATGYFGQFVVKPLLGYLFYIIAVTVFGLPTGIGAGMVLVACVSGAQLSNYATFLTDPEMAPLSIVMTSLSTASAVFVTPLLLLLLIGKRLPIDVKGMVFSITQIVVVPIAVGLLLNRFFPSICNAIRPFLPPLSVLTAAICAGAPLALNVECIKSPLGISILLLVVAFHLSAFIAGYMLSGSVFRDSPDVKPLQRTISFETGMQSSLLALALANKFFEDPVVGMPPAISVNSQF*