AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004688.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004688.01.T01 MTR_1g084820 94.758 496 26 0 1 496 1 496 0.0 835
MsG0180004688.01.T01 MTR_1g084820 94.758 496 26 0 1 496 1 496 0.0 833
MsG0180004688.01.T01 MTR_7g111600 63.102 187 48 8 318 496 64 237 2.90e-53 182
MsG0180004688.01.T01 MTR_7g111600 63.102 187 48 8 318 496 64 237 5.60e-53 180
MsG0180004688.01.T01 MTR_7g111600 63.102 187 48 8 318 496 64 237 1.65e-52 180
MsG0180004688.01.T01 MTR_3g048280 47.436 156 59 4 346 500 60 193 5.46e-36 133
MsG0180004688.01.T01 MTR_2g049670 66.234 77 26 0 420 496 158 234 6.12e-29 117
MsG0180004688.01.T01 MTR_5g015720 26.282 468 228 16 54 496 33 408 6.64e-28 115
MsG0180004688.01.T01 MTR_5g091650 57.647 85 35 1 413 496 101 185 9.20e-27 107
MsG0180004688.01.T01 MTR_5g091650 53.125 96 44 1 402 496 90 185 1.25e-26 109
MsG0180004688.01.T01 MTR_1g056640 60.976 82 30 2 416 495 402 483 1.66e-25 109
MsG0180004688.01.T01 MTR_8g089400 51.961 102 46 3 397 496 15 115 7.59e-25 100
MsG0180004688.01.T01 MTR_8g089400 51.961 102 46 3 397 496 35 135 8.93e-25 101
MsG0180004688.01.T01 MTR_8g085400 59.494 79 30 1 418 496 31 107 1.38e-24 99.0
MsG0180004688.01.T01 MTR_4g132280 52.874 87 39 2 412 496 374 460 7.63e-23 102
MsG0180004688.01.T01 MTR_8g088120 65.217 69 23 1 429 496 57 125 1.44e-22 96.7
MsG0180004688.01.T01 MTR_8g085440 50.000 82 40 1 416 496 28 109 2.31e-22 92.4
MsG0180004688.01.T01 MTR_3g082080 53.750 80 36 1 420 498 157 236 7.11e-22 95.1
MsG0180004688.01.T01 MTR_8g085420 48.780 82 41 1 416 496 28 109 7.27e-22 92.0
MsG0180004688.01.T01 MTR_8g085390 54.430 79 35 1 419 496 29 107 2.43e-21 92.0
MsG0180004688.01.T01 MTR_5g097420 51.724 87 40 2 412 496 22 108 1.03e-20 87.8
MsG0180004688.01.T01 MTR_5g085580 54.762 84 36 2 414 495 376 459 3.99e-20 93.6
MsG0180004688.01.T01 MTR_1g116870 48.780 82 41 1 416 496 272 353 4.09e-19 89.4
MsG0180004688.01.T01 MTR_1g022160 44.860 107 51 3 393 498 371 470 6.29e-19 89.7
MsG0180004688.01.T01 MTR_4g109490 54.430 79 34 2 419 496 23 100 1.02e-18 85.5
MsG0180004688.01.T01 MTR_6g088885 42.391 92 50 2 408 496 357 448 2.83e-18 88.2
MsG0180004688.01.T01 MTR_5g044530 52.055 73 34 1 417 488 19 91 3.43e-18 84.7
MsG0180004688.01.T01 MTR_1g022160 50.633 79 38 1 419 496 390 468 3.53e-18 87.4
MsG0180004688.01.T01 MTR_4g079530 46.067 89 46 2 410 496 27 115 3.70e-18 80.9
MsG0180004688.01.T01 MTR_1g022160 50.000 78 38 1 419 495 390 467 6.28e-18 86.7
MsG0180004688.01.T01 MTR_4g133735 48.235 85 42 2 414 496 22 106 7.53e-18 79.7
MsG0180004688.01.T01 MTR_4g083500 43.750 80 44 1 418 496 400 479 2.13e-17 85.5
MsG0180004688.01.T01 MTR_4g083070 52.857 70 32 1 420 488 21 90 5.06e-17 79.7
MsG0180004688.01.T01 MTR_3g083580 45.679 81 42 2 418 496 360 440 5.12e-17 84.0
MsG0180004688.01.T01 MTR_8g085720 49.367 79 38 2 420 496 364 442 5.17e-17 84.0
MsG0180004688.01.T01 MTR_4g133730 45.882 85 44 2 414 496 22 106 1.22e-16 76.3
MsG0180004688.01.T01 MTR_5g078200 48.148 81 40 2 418 496 358 438 1.42e-16 83.2
MsG0180004688.01.T01 MTR_5g078200 48.148 81 40 2 418 496 325 405 1.65e-16 82.8
MsG0180004688.01.T01 MTR_4g079530 51.899 79 36 2 420 496 37 115 2.02e-16 77.4
MsG0180004688.01.T01 MTR_4g069940 46.078 102 46 4 403 496 353 453 2.92e-16 81.6
MsG0180004688.01.T01 MTR_1g031900 48.148 81 40 2 418 496 359 439 4.63e-16 81.3
MsG0180004688.01.T01 MTR_2g072500 46.250 80 41 2 418 496 6 84 5.86e-16 73.6
MsG0180004688.01.T01 MTR_1g031900 48.148 81 40 2 418 496 359 439 6.56e-16 80.5
MsG0180004688.01.T01 MTR_3g065460 40.777 103 59 2 396 496 337 439 1.10e-15 79.7
MsG0180004688.01.T01 MTR_8g102340 43.750 80 43 2 419 496 333 412 3.13e-15 78.6
MsG0180004688.01.T01 MTR_3g116510 44.898 98 49 3 403 496 218 314 8.87e-15 75.9
MsG0180004688.01.T01 MTR_3g116510 44.898 98 49 3 403 496 352 448 1.02e-14 76.6
MsG0180004688.01.T01 MTR_7g026340 39.796 98 58 1 400 496 345 442 5.01e-14 74.7
MsG0180004688.01.T01 MTR_3g095050 37.113 97 57 4 403 497 356 450 7.44e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004688.01.T01 AT1G09460 69.912 113 31 2 386 496 101 212 3.78e-39 145
MsG0180004688.01.T01 AT1G29380 68.354 79 24 1 420 497 148 226 3.40e-30 118
MsG0180004688.01.T01 AT1G29380 68.354 79 24 1 420 497 148 226 3.40e-30 118
MsG0180004688.01.T01 AT2G30933 44.615 130 40 2 368 496 61 159 9.39e-30 114
MsG0180004688.01.T01 AT2G30933 44.615 130 40 2 368 496 61 159 9.39e-30 114
MsG0180004688.01.T01 AT1G29380 68.354 79 24 1 420 497 148 226 1.06e-29 117
MsG0180004688.01.T01 AT1G29380 68.354 79 24 1 420 497 148 226 1.47e-29 118
MsG0180004688.01.T01 AT2G30933 44.615 130 40 2 368 496 61 159 3.28e-29 115
MsG0180004688.01.T01 AT2G05790 56.604 106 41 3 395 495 356 461 6.78e-27 114
MsG0180004688.01.T01 AT5G55180 54.348 92 40 2 413 502 365 456 1.12e-24 107
MsG0180004688.01.T01 AT5G55180 56.471 85 35 2 413 495 365 449 8.14e-23 101
MsG0180004688.01.T01 AT1G11820 54.217 83 36 2 418 498 379 461 1.81e-22 100
MsG0180004688.01.T01 AT4G05430 46.602 103 53 2 397 497 25 127 2.30e-22 93.2
MsG0180004688.01.T01 AT4G05430 46.465 99 51 2 400 496 3 101 4.47e-22 92.8
MsG0180004688.01.T01 AT4G05430 46.078 102 53 2 397 496 25 126 9.21e-22 92.8
MsG0180004688.01.T01 AT1G11820 54.321 81 35 2 418 496 379 459 2.05e-21 97.8
MsG0180004688.01.T01 AT4G26830 36.066 183 103 6 322 495 267 444 4.84e-21 96.3
MsG0180004688.01.T01 AT4G26830 36.066 183 103 6 322 495 271 448 7.58e-21 95.5
MsG0180004688.01.T01 AT5G35740 51.765 85 38 3 415 496 25 109 1.63e-20 87.4
MsG0180004688.01.T01 AT3G55430 44.828 87 47 1 412 497 358 444 1.84e-20 94.4
MsG0180004688.01.T01 AT1G79480 52.564 78 36 1 420 496 311 388 6.90e-20 92.0
MsG0180004688.01.T01 AT1G79480 52.564 78 36 1 420 496 310 387 6.90e-20 92.0
MsG0180004688.01.T01 AT5G67460 37.821 156 78 5 354 498 226 373 1.04e-19 91.3
MsG0180004688.01.T01 AT4G34480 49.367 79 39 1 419 496 252 330 1.84e-19 90.9
MsG0180004688.01.T01 AT1G18650 49.367 79 39 1 419 496 20 98 2.11e-19 86.3
MsG0180004688.01.T01 AT1G18650 49.367 79 39 1 419 496 20 98 2.34e-19 84.7
MsG0180004688.01.T01 AT4G34480 49.367 79 39 1 419 496 363 441 2.84e-19 91.3
MsG0180004688.01.T01 AT5G67460 37.662 154 77 5 354 496 226 371 5.77e-19 89.0
MsG0180004688.01.T01 AT1G69295 56.338 71 29 2 419 488 20 89 5.95e-19 86.3
MsG0180004688.01.T01 AT4G13600 50.000 78 38 1 420 496 61 138 7.05e-19 86.3
MsG0180004688.01.T01 AT1G69295 56.338 71 29 2 419 488 16 85 8.78e-19 85.5
MsG0180004688.01.T01 AT5G61130 49.367 79 39 1 419 496 20 98 2.34e-18 84.0
MsG0180004688.01.T01 AT2G42930 44.706 85 45 1 420 502 40 124 1.22e-17 79.7
MsG0180004688.01.T01 AT2G01630 48.148 81 40 2 418 496 358 438 1.41e-17 85.5
MsG0180004688.01.T01 AT1G26450 53.521 71 31 2 421 490 22 91 1.43e-17 81.6
MsG0180004688.01.T01 AT2G01630 47.561 82 41 2 418 497 358 439 1.50e-17 85.9
MsG0180004688.01.T01 AT3G58100 50.000 80 38 2 420 497 41 120 3.09e-17 80.1
MsG0180004688.01.T01 AT3G58100 50.000 80 38 2 420 497 117 196 4.83e-17 81.3
MsG0180004688.01.T01 AT1G66250 45.679 81 42 2 418 496 366 446 1.36e-16 82.8
MsG0180004688.01.T01 AT2G16230 45.570 79 42 1 419 496 365 443 2.14e-16 82.4
MsG0180004688.01.T01 AT5G08000 49.383 81 40 1 417 496 37 117 2.38e-16 78.6
MsG0180004688.01.T01 AT5G56590 48.101 79 39 2 420 496 369 447 4.43e-16 81.3
MsG0180004688.01.T01 AT5G24318 37.000 100 56 2 398 496 356 449 6.46e-16 80.5
MsG0180004688.01.T01 AT5G63225 42.353 85 48 1 413 496 18 102 7.14e-16 73.9
MsG0180004688.01.T01 AT2G04910 42.857 84 46 2 415 496 10 93 7.39e-16 73.9
MsG0180004688.01.T01 AT5G24318 37.000 100 56 2 398 496 217 310 1.01e-15 78.6
MsG0180004688.01.T01 AT5G24318 37.000 100 56 2 398 496 356 449 1.05e-15 79.7
MsG0180004688.01.T01 AT3G13560 49.367 79 38 2 420 496 362 440 1.13e-15 80.1
MsG0180004688.01.T01 AT3G13560 49.367 79 38 2 420 496 362 440 1.13e-15 80.1
MsG0180004688.01.T01 AT3G13560 49.367 79 38 2 420 496 362 440 1.13e-15 80.1
MsG0180004688.01.T01 AT3G13560 49.367 79 38 2 420 496 362 440 1.13e-15 80.1
MsG0180004688.01.T01 AT3G13560 49.367 79 38 2 420 496 362 440 1.13e-15 80.1
MsG0180004688.01.T01 AT4G29360 45.679 81 42 2 418 496 389 469 1.41e-15 79.7
MsG0180004688.01.T01 AT4G29360 45.679 81 42 2 418 496 399 479 1.47e-15 79.7
MsG0180004688.01.T01 AT5G08000 50.746 67 32 1 419 484 20 86 2.28e-15 75.1
MsG0180004688.01.T01 AT2G04910 43.678 87 47 2 415 499 10 96 2.57e-15 72.8
MsG0180004688.01.T01 AT1G66870 40.741 81 46 2 418 496 51 131 3.23e-15 73.2
MsG0180004688.01.T01 AT1G66870 40.741 81 46 2 418 496 24 104 4.06e-15 72.0
MsG0180004688.01.T01 AT3G23770 44.211 95 49 4 405 497 374 466 4.62e-15 77.8
MsG0180004688.01.T01 AT4G09090 48.485 66 33 1 420 484 31 96 6.08e-15 71.6
MsG0180004688.01.T01 AT4G09462 40.964 83 48 1 415 496 24 106 7.43e-15 71.2
MsG0180004688.01.T01 AT4G09465 39.759 83 49 1 415 496 26 108 1.34e-14 70.5
MsG0180004688.01.T01 AT1G66855 39.506 81 47 2 418 496 24 104 1.51e-14 70.5
MsG0180004688.01.T01 AT4G09467 39.759 83 49 1 415 496 26 108 1.67e-14 70.5
MsG0180004688.01.T01 AT4G09464 39.759 83 49 1 415 496 26 108 1.67e-14 70.5
MsG0180004688.01.T01 AT1G66852 38.750 80 48 1 418 496 24 103 2.15e-14 69.7
MsG0180004688.01.T01 AT1G78520 39.286 84 49 2 414 496 26 108 2.75e-14 69.7
MsG0180004688.01.T01 AT4G09466 39.759 83 49 1 415 496 26 108 4.55e-14 68.9
MsG0180004688.01.T01 AT5G63230 37.209 86 53 1 413 497 19 104 1.30e-13 67.8
MsG0180004688.01.T01 AT5G63250 38.889 90 50 3 412 496 33 122 1.48e-13 68.2
MsG0180004688.01.T01 AT5G63240 35.106 94 57 2 407 496 27 120 8.91e-13 65.9
MsG0180004688.01.T01 AT1G13830 42.466 73 41 1 417 488 32 104 1.21e-12 67.4
MsG0180004688.01.T01 AT4G16165 38.272 81 48 2 418 496 24 104 1.24e-12 64.7
MsG0180004688.01.T01 AT1G13830 42.857 70 39 1 420 488 21 90 1.93e-12 66.6
MsG0180004688.01.T01 AT5G53600 40.000 80 46 2 418 496 27 105 3.67e-12 63.5
MsG0180004688.01.T01 AT2G39640 36.957 92 51 2 406 496 351 436 4.56e-12 68.9
MsG0180004688.01.T01 AT2G39640 34.177 79 51 1 419 496 459 537 8.58e-12 67.8
MsG0180004688.01.T01 AT2G03505 34.940 83 53 1 419 500 20 102 4.87e-12 63.5
MsG0180004688.01.T01 AT2G43660 41.111 90 49 4 409 496 26 113 5.40e-12 63.5
MsG0180004688.01.T01 AT2G43660 41.111 90 49 4 409 496 25 112 6.78e-12 63.2
MsG0180004688.01.T01 AT2G03505 34.940 83 53 1 419 500 20 102 9.09e-12 63.9
MsG0180004688.01.T01 AT2G03505 34.940 83 53 1 419 500 20 102 9.09e-12 63.9
MsG0180004688.01.T01 AT2G03505 34.940 83 53 1 419 500 20 102 9.09e-12 63.9
MsG0180004688.01.T01 AT2G29735 40.000 90 51 2 413 499 24 113 1.37e-11 62.0
MsG0180004688.01.T01 AT5G53610 41.026 78 44 2 420 496 28 104 9.38e-11 59.3

Find 100 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTTCATGCAGGTTCTT+TGG 0.248475 1:+81248397 MsG0180004688.01.T01:intron
TAGATTACTTTCATTTATAA+AGG 0.277901 1:+81248853 MsG0180004688.01.T01:CDS
ATGAAGAAACTTTGCTCTGC+TGG 0.376113 1:-81248466 None:intergenic
GGAGGTGGATAAGATGTTAC+TGG 0.377508 1:-81249505 None:intergenic
ATGATAGAAGATAGCATTGA+TGG 0.377602 1:+81248893 MsG0180004688.01.T01:CDS
CCTCCAAAGTCGCAACTTGT+TGG 0.380624 1:-81249784 None:intergenic
GGTGTAATGGTTGGAGTTGT+TGG 0.382964 1:-81249409 None:intergenic
GGCATTGCAGCTGGATTTGT+AGG 0.384777 1:-81249346 None:intergenic
TGTGGAAGGAACTGCTATAA+TGG 0.388341 1:-81249305 None:intergenic
TCAGTGTGATTGATATATAC+AGG 0.391997 1:-81248205 None:intergenic
GCTCCAACAAGTTGCGACTT+TGG 0.392668 1:+81249781 MsG0180004688.01.T01:CDS
TTAAATGTTAAAATCTTACT+TGG 0.392889 1:-81249832 None:intergenic
TACACAATACTCTCTGATAA+TGG 0.394136 1:+81248245 MsG0180004688.01.T01:exon
ATAACTGGTGTTGGATTTGT+AGG 0.394170 1:-81249262 None:intergenic
GCATGGTTCTGCAAAGTAAC+AGG 0.394899 1:-81249721 None:intergenic
GAGCTTTCGTCACAGATCAT+AGG 0.396108 1:+81248498 MsG0180004688.01.T01:CDS
CGAGTTACTTCTATTGAACT+TGG 0.401043 1:-81249034 None:intergenic
TTGGATTATGCTTGTGGAAA+TGG 0.401736 1:+81249655 MsG0180004688.01.T01:CDS
CTTCAATGAAAGAACTCAAA+AGG 0.413209 1:+81249137 MsG0180004688.01.T01:CDS
GTAGTTGAAGGAACTGTTAC+TGG 0.413784 1:-81249367 None:intergenic
GAAGGAGCATTTGTGTTTGA+AGG 0.413852 1:-81249568 None:intergenic
GTTGGAGTTGTTGGAGGTAA+AGG 0.413921 1:-81249400 None:intergenic
TTGAAGGAGGTGGCTGTTGA+GGG 0.417203 1:-81249552 None:intergenic
CACAAATGCTCCTTCTGCTC+AGG 0.420750 1:+81249576 MsG0180004688.01.T01:CDS
ACCACTGGAACATTTCCTAA+TGG 0.424925 1:-81249526 None:intergenic
GGATAAGATGTTACTGGAGG+TGG 0.426667 1:-81249499 None:intergenic
ACTGTTACTGGCATTGCAGC+TGG 0.430772 1:-81249355 None:intergenic
TGATTGTTCTCAAATACAAC+AGG 0.433295 1:+81249681 MsG0180004688.01.T01:CDS
ACAACTCCTACAACAGTTCC+AGG 0.436358 1:+81249454 MsG0180004688.01.T01:CDS
ACATCTTATCCACCTCCATT+AGG 0.436623 1:+81249511 MsG0180004688.01.T01:CDS
CTTTCATGCAGGTTCTTTGG+TGG 0.439102 1:+81248400 MsG0180004688.01.T01:intron
GGAAATTGTGACAGGATTTG+TGG 0.439347 1:-81249323 None:intergenic
TTTCATGCAGGTTCTTTGGT+GGG 0.448012 1:+81248401 MsG0180004688.01.T01:intron
TTTGAAGGAGGTGGCTGTTG+AGG 0.448619 1:-81249553 None:intergenic
AGCTTCCCTTCAATCAGCAT+TGG 0.454325 1:+81249636 MsG0180004688.01.T01:CDS
AACTTCCTCAAGACTTGAAG+TGG 0.458266 1:-81248803 None:intergenic
AGTTGGTGTGTGGCGAAAAC+AGG 0.475765 1:+81249604 MsG0180004688.01.T01:CDS
AAGTCGCAACTTGTTGGAGC+TGG 0.478203 1:-81249778 None:intergenic
GAGGCAGAAAGAAGCTTCCT+TGG 0.478234 1:-81248268 None:intergenic
GGTGCACCTGGAACTGTTGT+AGG 0.485248 1:-81249460 None:intergenic
GTAGGGTAAACTGTGTTTGT+TGG 0.486254 1:-81249244 None:intergenic
GGAGGTGGATAAGATGTTAC+TGG 0.487201 1:-81249484 None:intergenic
GGCTGTTGAGGGTTTACCAC+TGG 0.491135 1:-81249541 None:intergenic
CATAATCCAATGCTGATTGA+AGG 0.493090 1:-81249642 None:intergenic
TTTGTAGGGGAAATTGTGAC+AGG 0.494725 1:-81249331 None:intergenic
TATCTAGAATATTTCTTCTG+TGG 0.496929 1:-81249210 None:intergenic
AGTGTCTCCTCTCTCATGAT+AGG 0.500543 1:-81248429 None:intergenic
GTATCTGAGGGTGTAATAAC+TGG 0.502389 1:-81249277 None:intergenic
GCATTGCAGCTGGATTTGTA+GGG 0.503176 1:-81249345 None:intergenic
GATGTTACTGGTGGTGCACC+TGG 0.511282 1:-81249472 None:intergenic
TTCAATGAAAGAACTCAAAA+GGG 0.511868 1:+81249138 MsG0180004688.01.T01:CDS
TCAGCATTGGATTATGCTTG+TGG 0.514748 1:+81249649 MsG0180004688.01.T01:CDS
GCATTTGTGTTTGAAGGAGG+TGG 0.517825 1:-81249562 None:intergenic
CTCTTGATTGTAAGAACCAC+AGG 0.520516 1:-81249001 None:intergenic
CATTTCCACTTCAAGTCTTG+AGG 0.520651 1:+81248798 MsG0180004688.01.T01:CDS
GGAGCATTTGTGTTTGAAGG+AGG 0.521515 1:-81249565 None:intergenic
GAAGACTGGTGCCGGTGTAA+TGG 0.528319 1:-81249422 None:intergenic
CAACTCTGTCCCTGAGCAGA+AGG 0.531643 1:-81249586 None:intergenic
TCCTTGCAAAGATGTTCCTG+TGG 0.532621 1:+81248985 MsG0180004688.01.T01:CDS
CCAACAAGTTGCGACTTTGG+AGG 0.533263 1:+81249784 MsG0180004688.01.T01:CDS
GGAACAGCAGGTGTAGTTGA+AGG 0.536488 1:-81249379 None:intergenic
GAAAGAACTCAAAAGGGAAG+AGG 0.546037 1:+81249144 MsG0180004688.01.T01:CDS
GGAACATTTCCTAATGGAGG+TGG 0.552963 1:-81249520 None:intergenic
GTTGGAGGTAAAGGAACAGC+AGG 0.553488 1:-81249391 None:intergenic
GAGGGTGTAATAACTGGTGT+TGG 0.563477 1:-81249271 None:intergenic
ATAATCCAATGCTGATTGAA+GGG 0.564193 1:-81249641 None:intergenic
TTTAACTCGGAAACTGCTGA+AGG 0.564291 1:-81248605 None:intergenic
ACTGTTGTAGGAGTTGTAGC+TGG 0.566759 1:-81249448 None:intergenic
TCTCTACTTAAACAAAAGCC+AGG 0.575198 1:+81248559 MsG0180004688.01.T01:CDS
TAACTGGTGTTGGATTTGTA+GGG 0.580532 1:-81249261 None:intergenic
CTTCTGCTCAGGGACAGAGT+TGG 0.581714 1:+81249587 MsG0180004688.01.T01:CDS
TTAAGAGCATGCATAATCAA+AGG 0.588835 1:-81248716 None:intergenic
TATAATGGTTGGAGTATCTG+AGG 0.591925 1:-81249290 None:intergenic
GAAGGAACTGCTATAATGGT+TGG 0.591976 1:-81249301 None:intergenic
AAGATCTCTCTTCTAGACAA+AGG 0.594620 1:-81249178 None:intergenic
ATACTCTCTGATAATGGCCA+AGG 0.605015 1:+81248251 MsG0180004688.01.T01:exon
GTAATGGTTGGAGTTGTTGG+AGG 0.606112 1:-81249406 None:intergenic
ATCATGAGAGAGGAGACACT+TGG 0.607322 1:+81248432 MsG0180004688.01.T01:CDS
GTTGTAGCTGGATTGAAGAC+TGG 0.620005 1:-81249436 None:intergenic
ACAAATGCTCCTTCTGCTCA+GGG 0.620260 1:+81249577 MsG0180004688.01.T01:CDS
ATTGTGACAGGATTTGTGGA+AGG 0.620979 1:-81249319 None:intergenic
TTAACTCGGAAACTGCTGAA+GGG 0.622484 1:-81248604 None:intergenic
AGAGAGAAGAGAGAAACAAG+AGG 0.623621 1:-81248287 None:intergenic
GCTGGATTGAAGACTGGTGC+CGG 0.624496 1:-81249430 None:intergenic
AACAACTCCAACCATTACAC+CGG 0.624559 1:+81249411 MsG0180004688.01.T01:CDS
ACTGGTGCCGGTGTAATGGT+TGG 0.625957 1:-81249418 None:intergenic
CAGTGATCTTCACATAAGCA+AGG 0.629071 1:+81248757 MsG0180004688.01.T01:CDS
ACCACAGGAACATCTTTGCA+AGG 0.631919 1:-81248986 None:intergenic
CATTGCAGCTGGATTTGTAG+GGG 0.635434 1:-81249344 None:intergenic
GAACTCAAAAGGGAAGAGGA+AGG 0.639773 1:+81249148 MsG0180004688.01.T01:CDS
TGTTGAAGGCAAAAGAAGCA+TGG 0.645483 1:-81249738 None:intergenic
TCCATTAGGAAATGTTCCAG+TGG 0.658091 1:+81249525 MsG0180004688.01.T01:CDS
ACTGGAACATTTCCTAATGG+AGG 0.658231 1:-81249523 None:intergenic
GCTGATTGAAGGGAAGCTTG+TGG 0.661755 1:-81249631 None:intergenic
CAGAAGCAGCAAGATTAGCG+CGG 0.682382 1:-81248958 None:intergenic
ATAATGGTTGGAGTATCTGA+GGG 0.698374 1:-81249289 None:intergenic
TCAGGGACAGAGTTGGTGTG+TGG 0.715688 1:+81249594 MsG0180004688.01.T01:CDS
GGTGGATAAGATGTTACTGG+AGG 0.717889 1:-81249502 None:intergenic
GATTGTTCTCAAATACAACA+GGG 0.719905 1:+81249682 MsG0180004688.01.T01:CDS
GGTGGATAAGATGTTACTGG+TGG 0.740803 1:-81249481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATTACTTTCATTTATAA+AGG + Chr1:81248853-81248872 MsG0180004688.01.T01:CDS 15.0%
!! TTAAATGTTAAAATCTTACT+TGG - Chr1:81249835-81249854 None:intergenic 15.0%
!!! ATGTTTTTGATGTTTAAATG+TGG - Chr1:81248653-81248672 None:intergenic 20.0%
!!! TCTTTTTGCTTCTAAATATT+TGG - Chr1:81249077-81249096 None:intergenic 20.0%
! ATATTATTTCACTTTCATGC+AGG + Chr1:81248389-81248408 MsG0180004688.01.T01:intron 25.0%
! TTCAATGAAAGAACTCAAAA+GGG + Chr1:81249138-81249157 MsG0180004688.01.T01:CDS 25.0%
!! TATCTAGAATATTTCTTCTG+TGG - Chr1:81249213-81249232 None:intergenic 25.0%
!!! AAGTAATGAATTTTTCAACC+TGG - Chr1:81248580-81248599 None:intergenic 25.0%
AAGCAAGGAAGTAAAAATCT+CGG + Chr1:81248772-81248791 MsG0180004688.01.T01:CDS 30.0%
CTTCAATGAAAGAACTCAAA+AGG + Chr1:81249137-81249156 MsG0180004688.01.T01:CDS 30.0%
GATTGTTCTCAAATACAACA+GGG + Chr1:81249682-81249701 MsG0180004688.01.T01:CDS 30.0%
TACACAATACTCTCTGATAA+TGG + Chr1:81248245-81248264 MsG0180004688.01.T01:exon 30.0%
TCAGTGTGATTGATATATAC+AGG - Chr1:81248208-81248227 None:intergenic 30.0%
TGATTGTTCTCAAATACAAC+AGG + Chr1:81249681-81249700 MsG0180004688.01.T01:CDS 30.0%
! ATAATCCAATGCTGATTGAA+GGG - Chr1:81249644-81249663 None:intergenic 30.0%
! ATGATAGAAGATAGCATTGA+TGG + Chr1:81248893-81248912 MsG0180004688.01.T01:CDS 30.0%
! TTAAGAGCATGCATAATCAA+AGG - Chr1:81248719-81248738 None:intergenic 30.0%
!! CTTTTGATAGTAACTGTTGA+AGG - Chr1:81249755-81249774 None:intergenic 30.0%
AAAAACATCATTGCTAGCTG+TGG + Chr1:81248665-81248684 MsG0180004688.01.T01:CDS 35.0%
AAGATCTCTCTTCTAGACAA+AGG - Chr1:81249181-81249200 None:intergenic 35.0%
CGAGTTACTTCTATTGAACT+TGG - Chr1:81249037-81249056 None:intergenic 35.0%
TCTCTACTTAAACAAAAGCC+AGG + Chr1:81248559-81248578 MsG0180004688.01.T01:CDS 35.0%
TTGGATTATGCTTGTGGAAA+TGG + Chr1:81249655-81249674 MsG0180004688.01.T01:CDS 35.0%
! ATAACTGGTGTTGGATTTGT+AGG - Chr1:81249265-81249284 None:intergenic 35.0%
! ATAATGGTTGGAGTATCTGA+GGG - Chr1:81249292-81249311 None:intergenic 35.0%
! CATAATCCAATGCTGATTGA+AGG - Chr1:81249645-81249664 None:intergenic 35.0%
! TAACTGGTGTTGGATTTGTA+GGG - Chr1:81249264-81249283 None:intergenic 35.0%
! TATAATGGTTGGAGTATCTG+AGG - Chr1:81249293-81249312 None:intergenic 35.0%
!! CACTAGTTGAGCTTTTAACT+CGG - Chr1:81248621-81248640 None:intergenic 35.0%
AACAACTCCAACCATTACAC+CGG + Chr1:81249411-81249430 MsG0180004688.01.T01:CDS 40.0%
AACTTCCTCAAGACTTGAAG+TGG - Chr1:81248806-81248825 None:intergenic 40.0%
ACATCTTATCCACCTCCATT+AGG + Chr1:81249511-81249530 MsG0180004688.01.T01:CDS 40.0%
ACCACTGGAACATTTCCTAA+TGG - Chr1:81249529-81249548 None:intergenic 40.0%
ACTGGAACATTTCCTAATGG+AGG - Chr1:81249526-81249545 None:intergenic 40.0%
AGAGAGAAGAGAGAAACAAG+AGG - Chr1:81248290-81248309 None:intergenic 40.0%
ATGAAGAAACTTTGCTCTGC+TGG - Chr1:81248469-81248488 None:intergenic 40.0%
ATTGTGACAGGATTTGTGGA+AGG - Chr1:81249322-81249341 None:intergenic 40.0%
CAGTGATCTTCACATAAGCA+AGG + Chr1:81248757-81248776 MsG0180004688.01.T01:CDS 40.0%
CATTTCCACTTCAAGTCTTG+AGG + Chr1:81248798-81248817 MsG0180004688.01.T01:CDS 40.0%
CTCTTGATTGTAAGAACCAC+AGG - Chr1:81249004-81249023 None:intergenic 40.0%
GAAAGAACTCAAAAGGGAAG+AGG + Chr1:81249144-81249163 MsG0180004688.01.T01:CDS 40.0%
GAAGGAACTGCTATAATGGT+TGG - Chr1:81249304-81249323 None:intergenic 40.0%
GGAAATTGTGACAGGATTTG+TGG - Chr1:81249326-81249345 None:intergenic 40.0%
GTAGGGTAAACTGTGTTTGT+TGG - Chr1:81249247-81249266 None:intergenic 40.0%
GTAGTTGAAGGAACTGTTAC+TGG - Chr1:81249370-81249389 None:intergenic 40.0%
TCACTTTCATGCAGGTTCTT+TGG + Chr1:81248397-81248416 MsG0180004688.01.T01:intron 40.0%
TCCATTAGGAAATGTTCCAG+TGG + Chr1:81249525-81249544 MsG0180004688.01.T01:CDS 40.0%
TGTGGAAGGAACTGCTATAA+TGG - Chr1:81249308-81249327 None:intergenic 40.0%
TGTTGAAGGCAAAAGAAGCA+TGG - Chr1:81249741-81249760 None:intergenic 40.0%
TTAACTCGGAAACTGCTGAA+GGG - Chr1:81248607-81248626 None:intergenic 40.0%
TTTAACTCGGAAACTGCTGA+AGG - Chr1:81248608-81248627 None:intergenic 40.0%
TTTCATGCAGGTTCTTTGGT+GGG + Chr1:81248401-81248420 MsG0180004688.01.T01:intron 40.0%
TTTGTAGGGGAAATTGTGAC+AGG - Chr1:81249334-81249353 None:intergenic 40.0%
! GGTTTTTCCTATCATGAGAG+AGG + Chr1:81248422-81248441 MsG0180004688.01.T01:CDS 40.0%
! GTATCTGAGGGTGTAATAAC+TGG - Chr1:81249280-81249299 None:intergenic 40.0%
! TCAGCATTGGATTATGCTTG+TGG + Chr1:81249649-81249668 MsG0180004688.01.T01:CDS 40.0%
!! ATACTCTCTGATAATGGCCA+AGG + Chr1:81248251-81248270 MsG0180004688.01.T01:exon 40.0%
!! GAAGGAGCATTTGTGTTTGA+AGG - Chr1:81249571-81249590 None:intergenic 40.0%
ACAAATGCTCCTTCTGCTCA+GGG + Chr1:81249577-81249596 MsG0180004688.01.T01:CDS 45.0%
ACAACTCCTACAACAGTTCC+AGG + Chr1:81249454-81249473 MsG0180004688.01.T01:CDS 45.0%
ACCACAGGAACATCTTTGCA+AGG - Chr1:81248989-81249008 None:intergenic 45.0%
ACTGTTGTAGGAGTTGTAGC+TGG - Chr1:81249451-81249470 None:intergenic 45.0%
AGCTTCCCTTCAATCAGCAT+TGG + Chr1:81249636-81249655 MsG0180004688.01.T01:CDS 45.0%
AGTGTCTCCTCTCTCATGAT+AGG - Chr1:81248432-81248451 None:intergenic 45.0%
ATCATGAGAGAGGAGACACT+TGG + Chr1:81248432-81248451 MsG0180004688.01.T01:CDS 45.0%
CATTGCAGCTGGATTTGTAG+GGG - Chr1:81249347-81249366 None:intergenic 45.0%
CTTTCATGCAGGTTCTTTGG+TGG + Chr1:81248400-81248419 MsG0180004688.01.T01:intron 45.0%
GAACTCAAAAGGGAAGAGGA+AGG + Chr1:81249148-81249167 MsG0180004688.01.T01:CDS 45.0%
GAGCTTTCGTCACAGATCAT+AGG + Chr1:81248498-81248517 MsG0180004688.01.T01:CDS 45.0%
GCATTGCAGCTGGATTTGTA+GGG - Chr1:81249348-81249367 None:intergenic 45.0%
GCATTTGTGTTTGAAGGAGG+TGG - Chr1:81249565-81249584 None:intergenic 45.0%
GGAACATTTCCTAATGGAGG+TGG - Chr1:81249523-81249542 None:intergenic 45.0%
GGAGGTGGATAAGATGTTAC+TGG - Chr1:81249487-81249506 None:intergenic 45.0%
GGATAAGATGTTACTGGAGG+TGG - Chr1:81249502-81249521 None:intergenic 45.0%
GGTGGATAAGATGTTACTGG+AGG - Chr1:81249484-81249503 None:intergenic 45.0%
GGTGGATAAGATGTTACTGG+TGG - Chr1:81249484-81249503 None:intergenic 45.0%
GGTGTAATGGTTGGAGTTGT+TGG - Chr1:81249412-81249431 None:intergenic 45.0%
GTAATGGTTGGAGTTGTTGG+AGG - Chr1:81249409-81249428 None:intergenic 45.0%
GTTGGAGTTGTTGGAGGTAA+AGG - Chr1:81249403-81249422 None:intergenic 45.0%
GTTGTAGCTGGATTGAAGAC+TGG - Chr1:81249439-81249458 None:intergenic 45.0%
TCCTTGCAAAGATGTTCCTG+TGG + Chr1:81248985-81249004 MsG0180004688.01.T01:CDS 45.0%
! GAGGGTGTAATAACTGGTGT+TGG - Chr1:81249274-81249293 None:intergenic 45.0%
! GCATGGTTCTGCAAAGTAAC+AGG - Chr1:81249724-81249743 None:intergenic 45.0%
! GGAGCATTTGTGTTTGAAGG+AGG - Chr1:81249568-81249587 None:intergenic 45.0%
ACTGTTACTGGCATTGCAGC+TGG - Chr1:81249358-81249377 None:intergenic 50.0%
CACAAATGCTCCTTCTGCTC+AGG + Chr1:81249576-81249595 MsG0180004688.01.T01:CDS 50.0%
CAGAAGCAGCAAGATTAGCG+CGG - Chr1:81248961-81248980 None:intergenic 50.0%
CCAACAAGTTGCGACTTTGG+AGG + Chr1:81249784-81249803 MsG0180004688.01.T01:CDS 50.0%
CCTCCAAAGTCGCAACTTGT+TGG - Chr1:81249787-81249806 None:intergenic 50.0%
GAGGCAGAAAGAAGCTTCCT+TGG - Chr1:81248271-81248290 None:intergenic 50.0%
GCTCCAACAAGTTGCGACTT+TGG + Chr1:81249781-81249800 MsG0180004688.01.T01:CDS 50.0%
GCTGATTGAAGGGAAGCTTG+TGG - Chr1:81249634-81249653 None:intergenic 50.0%
GGAACAGCAGGTGTAGTTGA+AGG - Chr1:81249382-81249401 None:intergenic 50.0%
GGCATTGCAGCTGGATTTGT+AGG - Chr1:81249349-81249368 None:intergenic 50.0%
GTTGGAGGTAAAGGAACAGC+AGG - Chr1:81249394-81249413 None:intergenic 50.0%
TTGAAGGAGGTGGCTGTTGA+GGG - Chr1:81249555-81249574 None:intergenic 50.0%
TTTGAAGGAGGTGGCTGTTG+AGG - Chr1:81249556-81249575 None:intergenic 50.0%
! AGTTGGTGTGTGGCGAAAAC+AGG + Chr1:81249604-81249623 MsG0180004688.01.T01:CDS 50.0%
!! AAGTCGCAACTTGTTGGAGC+TGG - Chr1:81249781-81249800 None:intergenic 50.0%
CAACTCTGTCCCTGAGCAGA+AGG - Chr1:81249589-81249608 None:intergenic 55.0%
CTTCTGCTCAGGGACAGAGT+TGG + Chr1:81249587-81249606 MsG0180004688.01.T01:CDS 55.0%
GCTGGATTGAAGACTGGTGC+CGG - Chr1:81249433-81249452 None:intergenic 55.0%
GGCTGTTGAGGGTTTACCAC+TGG - Chr1:81249544-81249563 None:intergenic 55.0%
GGTGCACCTGGAACTGTTGT+AGG - Chr1:81249463-81249482 None:intergenic 55.0%
! GATGTTACTGGTGGTGCACC+TGG - Chr1:81249475-81249494 None:intergenic 55.0%
!! ACTGGTGCCGGTGTAATGGT+TGG - Chr1:81249421-81249440 None:intergenic 55.0%
!! GAAGACTGGTGCCGGTGTAA+TGG - Chr1:81249425-81249444 None:intergenic 55.0%
!! TCAGGGACAGAGTTGGTGTG+TGG + Chr1:81249594-81249613 MsG0180004688.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81248199 81249858 81248199 ID=MsG0180004688.01;Name=MsG0180004688.01
Chr1 mRNA 81248199 81249858 81248199 ID=MsG0180004688.01.T01;Parent=MsG0180004688.01;Name=MsG0180004688.01.T01;_AED=0.28;_eAED=0.28;_QI=65|1|0.5|1|1|1|2|0|502
Chr1 exon 81248199 81248324 81248199 ID=MsG0180004688.01.T01:exon:34359;Parent=MsG0180004688.01.T01
Chr1 exon 81248411 81249858 81248411 ID=MsG0180004688.01.T01:exon:34360;Parent=MsG0180004688.01.T01
Chr1 five_prime_UTR 81248199 81248263 81248199 ID=MsG0180004688.01.T01:five_prime_utr;Parent=MsG0180004688.01.T01
Chr1 CDS 81248264 81248324 81248264 ID=MsG0180004688.01.T01:cds;Parent=MsG0180004688.01.T01
Chr1 CDS 81248411 81249858 81248411 ID=MsG0180004688.01.T01:cds;Parent=MsG0180004688.01.T01
Gene Sequence

>MsG0180004688.01.T01

ATGGCCAAGGAAGCTTCTTTCTGCCTCTTGTTTCTCTCTTCTCTCTTAATTTCATGTTCTAGTTCTTTGGTGGGTTTTTCCTATCATGAGAGAGGAGACACTTGGACATCATTACTCCAGCAGAGCAAAGTTTCTTCATCTCAGATTCGAGCTTTCGTCACAGATCATAGGATTTTGAGCACTCTTACAAACTCAAATGTGTTAGTTGATCTCTACTTAAACAAAAGCCAGGTTGAAAAATTCATTACTTCAAACCCTTCAGCAGTTTCCGAGTTAAAAGCTCAACTAGTGAGCTTTCTTCCACATTTAAACATCAAAAACATCATTGCTAGCTGTGGAAGTGAGTGCTTAGTACAAAATGAGATACCTTTGATTATGCATGCTCTTAAATCAATTCATTCAATTCTCAGTGATCTTCACATAAGCAAGGAAGTAAAAATCTCGGTCGCATTTCCACTTCAAGTCTTGAGGAAGTTGAATGCATCACAAGAACACGAAATTCGTAGATTACTTTCATTTATAAAGGAAACGAAATCGTTTGTAATGATAGAAGATAGCATTGATGGAGAATTAAGTGTGAATGATCATTTTGTTCAGACAATTATCAACCGCGCTAATCTTGCTGCTTCTGTTCTTCCTTGCAAAGATGTTCCTGTGGTTCTTACAATCAAGAGTTCAGTTATACCAAGTTCAATAGAAGTAACTCGATTTAGTAAAAGAGTATCCAAATATTTAGAAGCAAAAAGAATAGCTGCATTATATGTAGAACTGCATACAACAGAAGATTCTTCAATGAAAGAACTCAAAAGGGAAGAGGAAGGTATGTTTCCTTTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAATATTCTAGATAACACAAACAGTCCAACAAACACAGTTTACCCTACAAATCCAACACCAGTTATTACACCCTCAGATACTCCAACCATTATAGCAGTTCCTTCCACAAATCCTGTCACAATTTCCCCTACAAATCCAGCTGCAATGCCAGTAACAGTTCCTTCAACTACACCTGCTGTTCCTTTACCTCCAACAACTCCAACCATTACACCGGCACCAGTCTTCAATCCAGCTACAACTCCTACAACAGTTCCAGGTGCACCACCAGTAACATCTTATCCACCTCCAGTAACATCTTATCCACCTCCATTAGGAAATGTTCCAGTGGTAAACCCTCAACAGCCACCTCCTTCAAACACAAATGCTCCTTCTGCTCAGGGACAGAGTTGGTGTGTGGCGAAAACAGGTGCTCCACAAGCTTCCCTTCAATCAGCATTGGATTATGCTTGTGGAAATGGTGCTGATTGTTCTCAAATACAACAGGGTGCAAGTTGTTACAGTCCTGTTACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGTTACTATCAAAAGAAGCCAGCTCCAACAAGTTGCGACTTTGGAGGCGCTGCTATGTTAGTTAGCTCAAATCCAAGTAAGATTTTAACATTTAAATAA

Protein sequence

>MsG0180004688.01.T01

MAKEASFCLLFLSSLLISCSSSLVGFSYHERGDTWTSLLQQSKVSSSQIRAFVTDHRILSTLTNSNVLVDLYLNKSQVEKFITSNPSAVSELKAQLVSFLPHLNIKNIIASCGSECLVQNEIPLIMHALKSIHSILSDLHISKEVKISVAFPLQVLRKLNASQEHEIRRLLSFIKETKSFVMIEDSIDGELSVNDHFVQTIINRANLAASVLPCKDVPVVLTIKSSVIPSSIEVTRFSKRVSKYLEAKRIAALYVELHTTEDSSMKELKREEEGMFPLSRREILSKFHRRNILDNTNSPTNTVYPTNPTPVITPSDTPTIIAVPSTNPVTISPTNPAAMPVTVPSTTPAVPLPPTTPTITPAPVFNPATTPTTVPGAPPVTSYPPPVTSYPPPLGNVPVVNPQQPPPSNTNAPSAQGQSWCVAKTGAPQASLQSALDYACGNGADCSQIQQGASCYSPVTLQNHASFAFNSYYQKKPAPTSCDFGGAAMLVSSNPSKILTFK*