AlfalfaGEDB | MsG0180004688.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004688.01

KEGG: -
GO: -
PFAM: PF07983

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004688.01.T01	KEH43123.1	94.758	496	26	0	1	496	1	496	0	835

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004688.01.T01	O65399	54.321	81	35	2	418	496	379	459	2.01E-20	97.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004688.01.T01	A0A072VNX1	94.758	496	26	0	1	496	1	496	0.0	835

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048633.01	MsG0180004688.01	0.826174	3.135027e-54	2.918140e-51
MsG0080048652.01	MsG0180004688.01	0.825469	4.609020e-54	4.204554e-51
MsG0180000138.01	MsG0180004688.01	0.806360	8.544294e-50	4.628215e-47
MsG0180001656.01	MsG0180004688.01	-0.804734	1.873922e-49	9.736915e-47
MsG0180002808.01	MsG0180004688.01	0.813254	2.808725e-51	1.824972e-48
MsG0180003620.01	MsG0180004688.01	0.862621	4.451124e-64	1.311835e-60
MsG0180004124.01	MsG0180004688.01	-0.815884	7.354878e-52	5.132861e-49
MsG0180004125.01	MsG0180004688.01	-0.813581	2.380212e-51	1.560447e-48
MsG0180004688.01	MsG0280010617.01	0.816123	6.504609e-52	4.569497e-49
MsG0180004688.01	MsG0380011756.01	0.814461	1.523032e-51	1.022581e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004688.01.T01	MTR_1g084820	94.758	496	26	0	1	496	1	496	0.0	835
MsG0180004688.01.T01	MTR_1g084820	94.758	496	26	0	1	496	1	496	0.0	833
MsG0180004688.01.T01	MTR_7g111600	63.102	187	48	8	318	496	64	237	2.90e-53	182
MsG0180004688.01.T01	MTR_7g111600	63.102	187	48	8	318	496	64	237	5.60e-53	180
MsG0180004688.01.T01	MTR_7g111600	63.102	187	48	8	318	496	64	237	1.65e-52	180
MsG0180004688.01.T01	MTR_3g048280	47.436	156	59	4	346	500	60	193	5.46e-36	133
MsG0180004688.01.T01	MTR_2g049670	66.234	77	26	0	420	496	158	234	6.12e-29	117
MsG0180004688.01.T01	MTR_5g015720	26.282	468	228	16	54	496	33	408	6.64e-28	115
MsG0180004688.01.T01	MTR_5g091650	57.647	85	35	1	413	496	101	185	9.20e-27	107
MsG0180004688.01.T01	MTR_5g091650	53.125	96	44	1	402	496	90	185	1.25e-26	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004688.01.T01	AT1G09460	69.912	113	31	2	386	496	101	212	3.78e-39	145
MsG0180004688.01.T01	AT1G29380	68.354	79	24	1	420	497	148	226	3.40e-30	118
MsG0180004688.01.T01	AT1G29380	68.354	79	24	1	420	497	148	226	3.40e-30	118
MsG0180004688.01.T01	AT2G30933	44.615	130	40	2	368	496	61	159	9.39e-30	114
MsG0180004688.01.T01	AT2G30933	44.615	130	40	2	368	496	61	159	9.39e-30	114
MsG0180004688.01.T01	AT1G29380	68.354	79	24	1	420	497	148	226	1.06e-29	117
MsG0180004688.01.T01	AT1G29380	68.354	79	24	1	420	497	148	226	1.47e-29	118
MsG0180004688.01.T01	AT2G30933	44.615	130	40	2	368	496	61	159	3.28e-29	115
MsG0180004688.01.T01	AT2G05790	56.604	106	41	3	395	495	356	461	6.78e-27	114
MsG0180004688.01.T01	AT5G55180	54.348	92	40	2	413	502	365	456	1.12e-24	107

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Find 100 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACTCCAACCATTACAC+CGG	0.624559	1:+81249411	MsG0180004688.01.T01:CDS
AACTTCCTCAAGACTTGAAG+TGG	0.458266	1:-81248803	None:intergenic
AAGATCTCTCTTCTAGACAA+AGG	0.594620	1:-81249178	None:intergenic
AAGTCGCAACTTGTTGGAGC+TGG	0.478203	1:-81249778	None:intergenic
ACAAATGCTCCTTCTGCTCA+GGG	0.620260	1:+81249577	MsG0180004688.01.T01:CDS
ACAACTCCTACAACAGTTCC+AGG	0.436358	1:+81249454	MsG0180004688.01.T01:CDS
ACATCTTATCCACCTCCATT+AGG	0.436623	1:+81249511	MsG0180004688.01.T01:CDS
ACCACAGGAACATCTTTGCA+AGG	0.631919	1:-81248986	None:intergenic
ACCACTGGAACATTTCCTAA+TGG	0.424925	1:-81249526	None:intergenic
ACTGGAACATTTCCTAATGG+AGG	0.658231	1:-81249523	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAGGAAGTAAAAATCT+CGG	+	Chr1:81248772-81248791	MsG0180004688.01.T01:CDS	30.0%
CTTCAATGAAAGAACTCAAA+AGG	+	Chr1:81249137-81249156	MsG0180004688.01.T01:CDS	30.0%
GATTGTTCTCAAATACAACA+GGG	+	Chr1:81249682-81249701	MsG0180004688.01.T01:CDS	30.0%
TACACAATACTCTCTGATAA+TGG	+	Chr1:81248245-81248264	MsG0180004688.01.T01:exon	30.0%
TCAGTGTGATTGATATATAC+AGG	-	Chr1:81248208-81248227	None:intergenic	30.0%
TGATTGTTCTCAAATACAAC+AGG	+	Chr1:81249681-81249700	MsG0180004688.01.T01:CDS	30.0%
AAAAACATCATTGCTAGCTG+TGG	+	Chr1:81248665-81248684	MsG0180004688.01.T01:CDS	35.0%
AAGATCTCTCTTCTAGACAA+AGG	-	Chr1:81249181-81249200	None:intergenic	35.0%
CGAGTTACTTCTATTGAACT+TGG	-	Chr1:81249037-81249056	None:intergenic	35.0%
TCTCTACTTAAACAAAAGCC+AGG	+	Chr1:81248559-81248578	MsG0180004688.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	81248199	81249858	81248199	ID=MsG0180004688.01;Name=MsG0180004688.01
Chr1	mRNA	81248199	81249858	81248199	ID=MsG0180004688.01.T01;Parent=MsG0180004688.01;Name=MsG0180004688.01.T01;_AED=0.28;_eAED=0.28;_QI=65\|1\|0.5\|1\|1\|1\|2\|0\|502
Chr1	exon	81248199	81248324	81248199	ID=MsG0180004688.01.T01:exon:34359;Parent=MsG0180004688.01.T01
Chr1	exon	81248411	81249858	81248411	ID=MsG0180004688.01.T01:exon:34360;Parent=MsG0180004688.01.T01
Chr1	five_prime_UTR	81248199	81248263	81248199	ID=MsG0180004688.01.T01:five_prime_utr;Parent=MsG0180004688.01.T01
Chr1	CDS	81248264	81248324	81248264	ID=MsG0180004688.01.T01:cds;Parent=MsG0180004688.01.T01
Chr1	CDS	81248411	81249858	81248411	ID=MsG0180004688.01.T01:cds;Parent=MsG0180004688.01.T01

Gene Sequence

>MsG0180004688.01.T01

ATGGCCAAGGAAGCTTCTTTCTGCCTCTTGTTTCTCTCTTCTCTCTTAATTTCATGTTCTAGTTCTTTGGTGGGTTTTTCCTATCATGAGAGAGGAGACACTTGGACATCATTACTCCAGCAGAGCAAAGTTTCTTCATCTCAGATTCGAGCTTTCGTCACAGATCATAGGATTTTGAGCACTCTTACAAACTCAAATGTGTTAGTTGATCTCTACTTAAACAAAAGCCAGGTTGAAAAATTCATTACTTCAAACCCTTCAGCAGTTTCCGAGTTAAAAGCTCAACTAGTGAGCTTTCTTCCACATTTAAACATCAAAAACATCATTGCTAGCTGTGGAAGTGAGTGCTTAGTACAAAATGAGATACCTTTGATTATGCATGCTCTTAAATCAATTCATTCAATTCTCAGTGATCTTCACATAAGCAAGGAAGTAAAAATCTCGGTCGCATTTCCACTTCAAGTCTTGAGGAAGTTGAATGCATCACAAGAACACGAAATTCGTAGATTACTTTCATTTATAAAGGAAACGAAATCGTTTGTAATGATAGAAGATAGCATTGATGGAGAATTAAGTGTGAATGATCATTTTGTTCAGACAATTATCAACCGCGCTAATCTTGCTGCTTCTGTTCTTCCTTGCAAAGATGTTCCTGTGGTTCTTACAATCAAGAGTTCAGTTATACCAAGTTCAATAGAAGTAACTCGATTTAGTAAAAGAGTATCCAAATATTTAGAAGCAAAAAGAATAGCTGCATTATATGTAGAACTGCATACAACAGAAGATTCTTCAATGAAAGAACTCAAAAGGGAAGAGGAAGGTATGTTTCCTTTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAATATTCTAGATAACACAAACAGTCCAACAAACACAGTTTACCCTACAAATCCAACACCAGTTATTACACCCTCAGATACTCCAACCATTATAGCAGTTCCTTCCACAAATCCTGTCACAATTTCCCCTACAAATCCAGCTGCAATGCCAGTAACAGTTCCTTCAACTACACCTGCTGTTCCTTTACCTCCAACAACTCCAACCATTACACCGGCACCAGTCTTCAATCCAGCTACAACTCCTACAACAGTTCCAGGTGCACCACCAGTAACATCTTATCCACCTCCAGTAACATCTTATCCACCTCCATTAGGAAATGTTCCAGTGGTAAACCCTCAACAGCCACCTCCTTCAAACACAAATGCTCCTTCTGCTCAGGGACAGAGTTGGTGTGTGGCGAAAACAGGTGCTCCACAAGCTTCCCTTCAATCAGCATTGGATTATGCTTGTGGAAATGGTGCTGATTGTTCTCAAATACAACAGGGTGCAAGTTGTTACAGTCCTGTTACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGTTACTATCAAAAGAAGCCAGCTCCAACAAGTTGCGACTTTGGAGGCGCTGCTATGTTAGTTAGCTCAAATCCAAGTAAGATTTTAACATTTAAATAA

Protein sequence

>MsG0180004688.01.T01

MAKEASFCLLFLSSLLISCSSSLVGFSYHERGDTWTSLLQQSKVSSSQIRAFVTDHRILSTLTNSNVLVDLYLNKSQVEKFITSNPSAVSELKAQLVSFLPHLNIKNIIASCGSECLVQNEIPLIMHALKSIHSILSDLHISKEVKISVAFPLQVLRKLNASQEHEIRRLLSFIKETKSFVMIEDSIDGELSVNDHFVQTIINRANLAASVLPCKDVPVVLTIKSSVIPSSIEVTRFSKRVSKYLEAKRIAALYVELHTTEDSSMKELKREEEGMFPLSRREILSKFHRRNILDNTNSPTNTVYPTNPTPVITPSDTPTIIAVPSTNPVTISPTNPAAMPVTVPSTTPAVPLPPTTPTITPAPVFNPATTPTTVPGAPPVTSYPPPVTSYPPPLGNVPVVNPQQPPPSNTNAPSAQGQSWCVAKTGAPQASLQSALDYACGNGADCSQIQQGASCYSPVTLQNHASFAFNSYYQKKPAPTSCDFGGAAMLVSSNPSKILTFK*