Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027074.01.T01 | XP_013452692.1 | 97.561 | 369 | 4 | 3 | 1 | 365 | 1 | 368 | 0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027074.01.T01 | A0A072ULL0 | 97.561 | 369 | 4 | 3 | 1 | 365 | 1 | 368 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048177.01 | MsG0580027074.01 | 0.814419 | 1.555958e-51 | 1.043528e-48 |
| MsG0180000220.01 | MsG0580027074.01 | 0.811385 | 7.189873e-51 | 4.444244e-48 |
| MsG0180000235.01 | MsG0580027074.01 | 0.801666 | 8.085184e-49 | 3.883428e-46 |
| MsG0180000799.01 | MsG0580027074.01 | 0.805616 | 1.225150e-49 | 6.511323e-47 |
| MsG0180001599.01 | MsG0580027074.01 | 0.807336 | 5.313661e-50 | 2.951799e-47 |
| MsG0180001922.01 | MsG0580027074.01 | 0.807797 | 4.240303e-50 | 2.383970e-47 |
| MsG0180002489.01 | MsG0580027074.01 | 0.815029 | 1.139719e-51 | 7.770499e-49 |
| MsG0180002491.01 | MsG0580027074.01 | 0.808257 | 3.384829e-50 | 1.926290e-47 |
| MsG0180003190.01 | MsG0580027074.01 | 0.812182 | 4.822903e-51 | 3.045378e-48 |
| MsG0180003864.01 | MsG0580027074.01 | 0.809293 | 2.032558e-50 | 1.188809e-47 |
| MsG0180003948.01 | MsG0580027074.01 | 0.812462 | 4.187875e-51 | 2.664618e-48 |
| MsG0180004079.01 | MsG0580027074.01 | 0.815161 | 1.065485e-51 | 7.289862e-49 |
| MsG0180004157.01 | MsG0580027074.01 | 0.800552 | 1.366234e-48 | 6.379906e-46 |
| MsG0180004689.01 | MsG0580027074.01 | 0.803826 | 2.896657e-49 | 1.470219e-46 |
| MsG0180004730.01 | MsG0580027074.01 | 0.828752 | 7.549121e-55 | 7.571624e-52 |
| MsG0180004767.01 | MsG0580027074.01 | 0.803526 | 3.342815e-49 | 1.683727e-46 |
| MsG0180004809.01 | MsG0580027074.01 | 0.823461 | 1.368182e-53 | 1.178769e-50 |
| MsG0180004984.01 | MsG0580027074.01 | 0.825771 | 3.908197e-54 | 3.596344e-51 |
| MsG0180005125.01 | MsG0580027074.01 | 0.832858 | 7.434553e-56 | 8.414700e-53 |
| MsG0180005765.01 | MsG0580027074.01 | 0.809443 | 1.887490e-50 | 1.108352e-47 |
| MsG0180005813.01 | MsG0580027074.01 | 0.826291 | 2.940064e-54 | 2.745732e-51 |
| MsG0180005949.01 | MsG0580027074.01 | 0.800955 | 1.130628e-48 | 5.334231e-46 |
| MsG0180006012.01 | MsG0580027074.01 | 0.802785 | 4.757281e-49 | 2.351143e-46 |
| MsG0180006013.01 | MsG0580027074.01 | 0.817750 | 2.805080e-52 | 2.060454e-49 |
| MsG0180006016.01 | MsG0580027074.01 | 0.838814 | 2.299502e-57 | 3.115439e-54 |
| MsG0180006226.01 | MsG0580027074.01 | -0.801240 | 9.886759e-49 | 4.698077e-46 |
| MsG0280010614.01 | MsG0580027074.01 | 0.810506 | 1.114253e-50 | 6.728661e-48 |
| MsG0280010702.01 | MsG0580027074.01 | 0.814112 | 1.818063e-51 | 1.209162e-48 |
| MsG0280010784.01 | MsG0580027074.01 | 0.809247 | 2.079222e-50 | 1.214623e-47 |
| MsG0280011141.01 | MsG0580027074.01 | 0.811819 | 5.786034e-51 | 3.617751e-48 |
| MsG0280011235.01 | MsG0580027074.01 | 0.804606 | 1.992746e-49 | 1.031919e-46 |
| MsG0280011410.01 | MsG0580027074.01 | 0.805119 | 1.556668e-49 | 8.168624e-47 |
| MsG0280011446.01 | MsG0580027074.01 | 0.807824 | 4.185754e-50 | 2.354896e-47 |
| MsG0380011754.01 | MsG0580027074.01 | 0.814211 | 1.729490e-51 | 1.153301e-48 |
| MsG0380012020.01 | MsG0580027074.01 | 0.811734 | 6.037114e-51 | 3.766406e-48 |
| MsG0380012124.01 | MsG0580027074.01 | 0.801987 | 6.946015e-49 | 3.363568e-46 |
| MsG0380012930.01 | MsG0580027074.01 | 0.800227 | 1.590912e-48 | 7.368124e-46 |
| MsG0380014365.01 | MsG0580027074.01 | 0.807087 | 5.999192e-50 | 3.310983e-47 |
| MsG0380014573.01 | MsG0580027074.01 | 0.838474 | 2.814016e-57 | 3.773302e-54 |
| MsG0380014680.01 | MsG0580027074.01 | 0.819832 | 9.438910e-53 | 7.344079e-50 |
| MsG0380014913.01 | MsG0580027074.01 | 0.823483 | 1.351999e-53 | 1.165593e-50 |
| MsG0480018460.01 | MsG0580027074.01 | 0.817292 | 3.557184e-52 | 2.580084e-49 |
| MsG0480018787.01 | MsG0580027074.01 | 0.811312 | 7.455106e-51 | 4.599230e-48 |
| MsG0480019434.01 | MsG0580027074.01 | 0.821723 | 3.470236e-53 | 2.845903e-50 |
| MsG0480020065.01 | MsG0580027074.01 | 0.803113 | 4.069556e-49 | 2.027988e-46 |
| MsG0480020090.01 | MsG0580027074.01 | 0.802351 | 5.845760e-49 | 2.857354e-46 |
| MsG0480020445.01 | MsG0580027074.01 | 0.816982 | 4.175102e-52 | 3.003039e-49 |
| MsG0480021034.01 | MsG0580027074.01 | 0.822162 | 2.745029e-53 | 2.279469e-50 |
| MsG0480021464.01 | MsG0580027074.01 | 0.809073 | 2.266119e-50 | 1.317605e-47 |
| MsG0480021465.01 | MsG0580027074.01 | 0.803264 | 3.787884e-49 | 1.894982e-46 |
| MsG0480021695.01 | MsG0580027074.01 | 0.832583 | 8.700654e-56 | 9.767339e-53 |
| MsG0480022164.01 | MsG0580027074.01 | 0.814189 | 1.748984e-51 | 1.165650e-48 |
| MsG0480022678.01 | MsG0580027074.01 | 0.815390 | 9.475845e-52 | 6.524461e-49 |
| MsG0480022752.01 | MsG0580027074.01 | 0.836513 | 8.953907e-57 | 1.130862e-53 |
| MsG0480023088.01 | MsG0580027074.01 | 0.850811 | 1.333989e-60 | 2.645352e-57 |
| MsG0480023174.01 | MsG0580027074.01 | 0.814437 | 1.541036e-51 | 1.034039e-48 |
| MsG0480023224.01 | MsG0580027074.01 | 0.817504 | 3.186517e-52 | 2.324858e-49 |
| MsG0480023245.01 | MsG0580027074.01 | 0.827375 | 1.619634e-54 | 1.561000e-51 |
| MsG0480023490.01 | MsG0580027074.01 | 0.810099 | 1.364280e-50 | 8.150898e-48 |
| MsG0480023517.01 | MsG0580027074.01 | 0.819797 | 9.616885e-53 | 7.475514e-50 |
| MsG0480024014.01 | MsG0580027074.01 | 0.803813 | 2.914166e-49 | 1.478636e-46 |
| MsG0580024205.01 | MsG0580027074.01 | 0.818130 | 2.301406e-52 | 1.708106e-49 |
| MsG0580024374.01 | MsG0580027074.01 | 0.808639 | 2.805199e-50 | 1.612317e-47 |
| MsG0580024910.01 | MsG0580027074.01 | 0.806368 | 8.511343e-50 | 4.611384e-47 |
| MsG0580025009.01 | MsG0580027074.01 | 0.817522 | 3.157181e-52 | 2.304531e-49 |
| MsG0580025026.01 | MsG0580027074.01 | 0.827667 | 1.378624e-54 | 1.339747e-51 |
| MsG0580025134.01 | MsG0580027074.01 | 0.824543 | 7.625464e-54 | 6.775055e-51 |
| MsG0580025236.01 | MsG0580027074.01 | 0.808643 | 2.800857e-50 | 1.609957e-47 |
| MsG0580025489.01 | MsG0580027074.01 | 0.810620 | 1.053149e-50 | 6.379138e-48 |
| MsG0580026002.01 | MsG0580027074.01 | 0.819566 | 1.085691e-52 | 8.384811e-50 |
| MsG0380016055.01 | MsG0580027074.01 | 0.814422 | 1.552942e-51 | 1.041609e-48 |
| MsG0380016227.01 | MsG0580027074.01 | 0.805125 | 1.552422e-49 | 8.147507e-47 |
| MsG0380016581.01 | MsG0580027074.01 | 0.849679 | 2.770706e-60 | 5.293916e-57 |
| MsG0380016624.01 | MsG0580027074.01 | 0.835603 | 1.524381e-56 | 1.873271e-53 |
| MsG0380016971.01 | MsG0580027074.01 | 0.809099 | 2.236749e-50 | 1.301471e-47 |
| MsG0380017146.01 | MsG0580027074.01 | 0.837214 | 5.932976e-57 | 7.653105e-54 |
| MsG0380017158.01 | MsG0580027074.01 | 0.820012 | 8.589397e-53 | 6.716813e-50 |
| MsG0380017285.01 | MsG0580027074.01 | 0.842833 | 2.030418e-58 | 3.116627e-55 |
| MsG0380017403.01 | MsG0580027074.01 | 0.843795 | 1.124580e-58 | 1.779266e-55 |
| MsG0380018009.01 | MsG0580027074.01 | 0.808624 | 2.827007e-50 | 1.624176e-47 |
| MsG0480018163.01 | MsG0580027074.01 | 0.807997 | 3.845333e-50 | 2.173268e-47 |
| MsG0580027074.01 | MsG0580027129.01 | 0.818369 | 2.032106e-52 | 1.518335e-49 |
| MsG0580027074.01 | MsG0580027228.01 | 0.922210 | 1.321113e-88 | 4.930441e-84 |
| MsG0580027074.01 | MsG0580027345.01 | 0.807785 | 4.266525e-50 | 2.397913e-47 |
| MsG0580027074.01 | MsG0580028284.01 | 0.811220 | 7.806293e-51 | 4.804506e-48 |
| MsG0580027074.01 | MsG0580029629.01 | 0.809046 | 2.295870e-50 | 1.333940e-47 |
| MsG0580027074.01 | MsG0580029758.01 | 0.800241 | 1.580336e-48 | 7.321760e-46 |
| MsG0580027074.01 | MsG0580029906.01 | 0.805955 | 1.039620e-49 | 5.573799e-47 |
| MsG0580027074.01 | MsG0580030235.01 | 0.818484 | 1.913591e-52 | 1.434248e-49 |
| MsG0580027074.01 | MsG0680030463.01 | 0.808753 | 2.653008e-50 | 1.529424e-47 |
| MsG0580027074.01 | MsG0680030839.01 | 0.839389 | 1.631220e-57 | 2.249479e-54 |
| MsG0580027074.01 | MsG0680031538.01 | 0.804847 | 1.774549e-49 | 9.247342e-47 |
| MsG0580027074.01 | MsG0680033339.01 | 0.815491 | 8.996170e-52 | 6.211886e-49 |
| MsG0580027074.01 | MsG0680035346.01 | 0.840695 | 7.449454e-58 | 1.069614e-54 |
| MsG0580027074.01 | MsG0680035656.01 | 0.803162 | 3.976620e-49 | 1.984230e-46 |
| MsG0580027074.01 | MsG0680035777.01 | 0.805247 | 1.463629e-49 | 7.705257e-47 |
| MsG0580027074.01 | MsG0780035958.01 | 0.821039 | 4.991460e-53 | 4.016391e-50 |
| MsG0580027074.01 | MsG0780038386.01 | 0.801052 | 1.080046e-48 | 5.108210e-46 |
| MsG0580027074.01 | MsG0780038491.01 | 0.803301 | 3.721103e-49 | 1.863305e-46 |
| MsG0580027074.01 | MsG0780038836.01 | 0.810774 | 9.749987e-51 | 5.930380e-48 |
| MsG0580027074.01 | MsG0780039405.01 | 0.802339 | 5.879905e-49 | 2.873104e-46 |
| MsG0580027074.01 | MsG0780040505.01 | 0.837276 | 5.718978e-57 | 7.391227e-54 |
| MsG0580027074.01 | MsG0780040516.01 | 0.814918 | 1.206119e-51 | 8.198050e-49 |
| MsG0580027074.01 | MsG0780040679.01 | 0.834392 | 3.077964e-56 | 3.647737e-53 |
| MsG0580027074.01 | MsG0780040861.01 | 0.813751 | 2.184288e-51 | 1.438556e-48 |
| MsG0580027074.01 | MsG0780040929.01 | 0.813740 | 2.195916e-51 | 1.445841e-48 |
| MsG0580027074.01 | MsG0780041065.01 | 0.808366 | 3.208491e-50 | 1.831177e-47 |
| MsG0580027074.01 | MsG0780041161.01 | 0.836229 | 1.057853e-56 | 1.324996e-53 |
| MsG0580027074.01 | MsG0780041357.01 | 0.854020 | 1.625624e-61 | 3.581224e-58 |
| MsG0580027074.01 | MsG0780041370.01 | 0.806419 | 8.301072e-50 | 4.503372e-47 |
| MsG0580027074.01 | MsG0780041469.01 | 0.801840 | 7.445310e-49 | 3.592079e-46 |
| MsG0580027074.01 | MsG0780041485.01 | 0.819762 | 9.795834e-53 | 7.606936e-50 |
| MsG0580027074.01 | MsG0780041559.01 | 0.816834 | 4.508077e-52 | 3.229149e-49 |
| MsG0580027074.01 | MsG0780041754.01 | 0.806189 | 9.283375e-50 | 5.007052e-47 |
| MsG0580027074.01 | MsG0880041985.01 | 0.819239 | 1.289512e-52 | 9.868224e-50 |
| MsG0580027074.01 | MsG0880042065.01 | 0.806563 | 7.739457e-50 | 4.214260e-47 |
| MsG0580027074.01 | MsG0880042811.01 | 0.834234 | 3.372277e-56 | 3.977389e-53 |
| MsG0580027074.01 | MsG0880042843.01 | 0.834109 | 3.623377e-56 | 4.257752e-53 |
| MsG0580027074.01 | MsG0880043082.01 | 0.804624 | 1.975933e-49 | 1.023650e-46 |
| MsG0580027074.01 | MsG0880043116.01 | 0.808768 | 2.633342e-50 | 1.518634e-47 |
| MsG0580027074.01 | MsG0880043591.01 | 0.810398 | 1.175910e-50 | 7.080352e-48 |
| MsG0580027074.01 | MsG0880044354.01 | 0.822010 | 2.977703e-53 | 2.461933e-50 |
| MsG0580027074.01 | MsG0880044415.01 | 0.807179 | 5.736184e-50 | 3.173526e-47 |
| MsG0580027074.01 | MsG0880045106.01 | 0.830917 | 2.241417e-55 | 2.395202e-52 |
| MsG0580027074.01 | MsG0880045290.01 | 0.832084 | 1.156340e-55 | 1.279000e-52 |
| MsG0580027074.01 | MsG0880045653.01 | 0.811641 | 6.324452e-51 | 3.935639e-48 |
| MsG0580027074.01 | MsG0880046113.01 | 0.836047 | 1.176661e-56 | 1.465524e-53 |
| MsG0580027074.01 | MsG0880046209.01 | 0.818526 | 1.872516e-52 | 1.405083e-49 |
| MsG0580027074.01 | MsG0880046244.01 | 0.825527 | 4.466173e-54 | 4.081033e-51 |
| MsG0580027074.01 | MsG0880046329.01 | 0.836714 | 7.958375e-57 | 1.011281e-53 |
| MsG0580027074.01 | MsG0880047019.01 | 0.814778 | 1.295348e-51 | 8.771632e-49 |
| MsG0580027074.01 | MsG0880047437.01 | 0.801211 | 1.001967e-48 | 4.757830e-46 |
| MsG0580027074.01 | MsG0880047590.01 | 0.847082 | 1.447852e-59 | 2.544513e-56 |
| MsG0580027074.01 | MsG0880047705.01 | 0.800752 | 1.243953e-48 | 5.838354e-46 |
| MsG0580027074.01 | MsG0880047742.01 | 0.823330 | 1.468034e-53 | 1.260116e-50 |
| MsG0280006595.01 | MsG0580027074.01 | 0.839589 | 1.447952e-57 | 2.008779e-54 |
| MsG0280007117.01 | MsG0580027074.01 | 0.807224 | 5.612433e-50 | 3.108681e-47 |
| MsG0280007549.01 | MsG0580027074.01 | 0.809539 | 1.800246e-50 | 1.059826e-47 |
| MsG0280007636.01 | MsG0580027074.01 | 0.813507 | 2.471426e-51 | 1.617028e-48 |
| MsG0280007815.01 | MsG0580027074.01 | 0.843502 | 1.347348e-58 | 2.112288e-55 |
| MsG0280008286.01 | MsG0580027074.01 | 0.844181 | 8.864681e-59 | 1.419719e-55 |
| MsG0280008502.01 | MsG0580027074.01 | 0.805224 | 1.480167e-49 | 7.787770e-47 |
| MsG0280008907.01 | MsG0580027074.01 | 0.833206 | 6.092208e-56 | 6.967432e-53 |
| MsG0280008970.01 | MsG0580027074.01 | 0.832220 | 1.070527e-55 | 1.188776e-52 |
| MsG0280008971.01 | MsG0580027074.01 | 0.808145 | 3.576209e-50 | 2.029150e-47 |
| MsG0280009024.01 | MsG0580027074.01 | 0.832682 | 8.223289e-56 | 9.258495e-53 |
| MsG0280009235.01 | MsG0580027074.01 | 0.833740 | 4.482620e-56 | 5.209174e-53 |
| MsG0280010389.01 | MsG0580027074.01 | 0.809566 | 1.776296e-50 | 1.046497e-47 |
| MsG0280010416.01 | MsG0580027074.01 | 0.820403 | 6.986606e-53 | 5.523059e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027074.01.T01 | MTR_6g472100 | 97.561 | 369 | 4 | 3 | 1 | 365 | 1 | 368 | 0.0 | 713 |
| MsG0580027074.01.T01 | MTR_6g046300 | 93.478 | 46 | 1 | 2 | 223 | 268 | 36 | 79 | 4.65e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027074.01.T01 | AT3G25590 | 36.465 | 447 | 147 | 19 | 1 | 348 | 1 | 409 | 2.08e-54 | 185 |
Find 57 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAGGTGGAGCTATATT+TGG | 0.183362 | 5:-52762869 | MsG0580027074.01.T01:CDS |
| GGAGAATTGGGAAACTATTT+AGG | 0.222773 | 5:-52763006 | MsG0580027074.01.T01:CDS |
| TAGAAGAAATCACTTCTTCT+TGG | 0.257265 | 5:+52762719 | None:intergenic |
| TTCTTCTATGAATATGAAAA+TGG | 0.271087 | 5:-52762704 | MsG0580027074.01.T01:CDS |
| GGTGGTGGTGGTGGAGGTGA+TGG | 0.288439 | 5:-52762476 | MsG0580027074.01.T01:CDS |
| GCAGATACACTCTCAGCTTT+TGG | 0.291697 | 5:-52762539 | MsG0580027074.01.T01:CDS |
| ATTTCAGCATTTGAATTCTA+AGG | 0.291707 | 5:-52763116 | MsG0580027074.01.T01:CDS |
| TTCTTCTTTCTCTTGCATCT+TGG | 0.305233 | 5:+52763093 | None:intergenic |
| TTAGAATTCAAATGCTGAAA+TGG | 0.334316 | 5:+52763118 | None:intergenic |
| TCAAATATCATTCAAGTTCA+AGG | 0.341466 | 5:-52762373 | MsG0580027074.01.T01:CDS |
| ATTTCTGCAGCTAGAAGTTC+AGG | 0.351861 | 5:-52762800 | MsG0580027074.01.T01:CDS |
| TAGAATTCAAATGCTGAAAT+GGG | 0.399760 | 5:+52763119 | None:intergenic |
| CATGATGCTGGTGGTGGTGG+TGG | 0.415319 | 5:-52762488 | MsG0580027074.01.T01:CDS |
| TTACTGTCTTAAAGAACGTT+TGG | 0.432017 | 5:-52763293 | MsG0580027074.01.T01:CDS |
| GGTGGTGGTGGAGGTGATGG+AGG | 0.453840 | 5:-52762473 | MsG0580027074.01.T01:CDS |
| ATCATCATGGAGGTGTTTCA+AGG | 0.475029 | 5:-52762910 | MsG0580027074.01.T01:CDS |
| TAGAAAGAGTACTGGTGTAA+TGG | 0.476645 | 5:-52762681 | MsG0580027074.01.T01:CDS |
| GCAAGAGAAAGAAGAAGAAG+AGG | 0.479357 | 5:-52763086 | MsG0580027074.01.T01:CDS |
| TTGATGGAAGCAGCTACAAT+AGG | 0.481008 | 5:-52762655 | MsG0580027074.01.T01:CDS |
| GAAAGAAGAAGAAGAGGTTG+TGG | 0.494932 | 5:-52763080 | MsG0580027074.01.T01:CDS |
| GGTGGTTTGATGTTAGAATC+TGG | 0.497991 | 5:-52762770 | MsG0580027074.01.T01:CDS |
| TGAATGAAAGAGGAATTAAG+AGG | 0.498145 | 5:-52762433 | MsG0580027074.01.T01:CDS |
| AACAGAGCATGAATTTCGAT+TGG | 0.499202 | 5:+52763201 | None:intergenic |
| ACACATGATGCTGGTGGTGG+TGG | 0.503836 | 5:-52762491 | MsG0580027074.01.T01:CDS |
| ACTGGTGTAATGGAAATTGA+TGG | 0.506563 | 5:-52762671 | MsG0580027074.01.T01:CDS |
| AAGCTTGTGTGTTCAGATTG+TGG | 0.522398 | 5:-52763268 | MsG0580027074.01.T01:CDS |
| AAAGTATTAAGGGTTGGAGA+TGG | 0.524569 | 5:-52762400 | MsG0580027074.01.T01:CDS |
| GAAAATGGTAGAAAGAGTAC+TGG | 0.527029 | 5:-52762689 | MsG0580027074.01.T01:CDS |
| AATAAGAAGAACAAGGATTG+TGG | 0.528290 | 5:-52762980 | MsG0580027074.01.T01:CDS |
| GAAGAAGGATGCTTCTTACA+TGG | 0.543996 | 5:+52763340 | None:intergenic |
| GTTTGATGTTAGAATCTGGT+AGG | 0.549457 | 5:-52762766 | MsG0580027074.01.T01:CDS |
| GAATGAAAGAGGAATTAAGA+GGG | 0.561877 | 5:-52762432 | MsG0580027074.01.T01:CDS |
| ATGACACATGATGCTGGTGG+TGG | 0.566242 | 5:-52762494 | MsG0580027074.01.T01:CDS |
| GCTAGAAGTTCAGGTGTGAA+TGG | 0.567727 | 5:-52762791 | MsG0580027074.01.T01:CDS |
| TTAGAATCTGGTAGGAGAAG+TGG | 0.568091 | 5:-52762758 | MsG0580027074.01.T01:CDS |
| AGATCTCTCTGCAGTTTCAG+AGG | 0.571126 | 5:-52762884 | MsG0580027074.01.T01:CDS |
| AAGGATTGTGGTAGAAGTGT+TGG | 0.572137 | 5:-52762968 | MsG0580027074.01.T01:CDS |
| TCGAAATTCATGCTCTGTTG+AGG | 0.575005 | 5:-52763197 | MsG0580027074.01.T01:CDS |
| GCTATATTTGGATCTGAAGA+TGG | 0.581428 | 5:-52762857 | MsG0580027074.01.T01:CDS |
| AATTTCATGACACATGATGC+TGG | 0.583341 | 5:-52762500 | MsG0580027074.01.T01:CDS |
| ATGTGGATGGTTGATCATCA+TGG | 0.586021 | 5:-52762923 | MsG0580027074.01.T01:CDS |
| TAGGAAGAATAAGAAGAACA+AGG | 0.590362 | 5:-52762987 | MsG0580027074.01.T01:CDS |
| AGGTTCACTATGAATGAAAG+AGG | 0.598015 | 5:-52762443 | MsG0580027074.01.T01:CDS |
| AATTCATGCTCTGTTGAGGT+AGG | 0.600288 | 5:-52763193 | MsG0580027074.01.T01:CDS |
| TTGATGAGAAGAATGAGATG+TGG | 0.604022 | 5:-52762940 | MsG0580027074.01.T01:CDS |
| GATTGTGGTAGAAGTGTTGG+TGG | 0.608270 | 5:-52762965 | MsG0580027074.01.T01:CDS |
| GAGGTGATGGAGGTTCATGT+AGG | 0.609166 | 5:-52762463 | MsG0580027074.01.T01:CDS |
| TCTCTCTGCAGTTTCAGAGG+TGG | 0.611498 | 5:-52762881 | MsG0580027074.01.T01:CDS |
| TCTGTTGAGGTAGGAAGTGT+TGG | 0.616434 | 5:-52763184 | MsG0580027074.01.T01:CDS |
| AGAAGTTCAGGTGTGAATGG+TGG | 0.616507 | 5:-52762788 | MsG0580027074.01.T01:CDS |
| TGAAGCTTATAGCAATGACA+TGG | 0.617179 | 5:-52763392 | MsG0580027074.01.T01:CDS |
| GTTCAGATTGTGGAGAACAA+AGG | 0.625847 | 5:-52763258 | MsG0580027074.01.T01:CDS |
| ATTGTGGTAGAAGTGTTGGT+GGG | 0.637779 | 5:-52762964 | MsG0580027074.01.T01:CDS |
| TGAGAAGAATGAGATGTGGA+TGG | 0.655301 | 5:-52762936 | MsG0580027074.01.T01:CDS |
| ATATTTGGATCTGAAGATGG+TGG | 0.728625 | 5:-52762854 | MsG0580027074.01.T01:CDS |
| TGGATGGTTGATCATCATGG+AGG | 0.776999 | 5:-52762920 | MsG0580027074.01.T01:CDS |
| TTCATGACACATGATGCTGG+TGG | 0.799625 | 5:-52762497 | MsG0580027074.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATCTGAATCAAAAA+TGG | - | Chr5:52763194-52763213 | MsG0580027074.01.T01:CDS | 20.0% |
| !! | TTCTTCTATGAATATGAAAA+TGG | - | Chr5:52763051-52763070 | MsG0580027074.01.T01:CDS | 20.0% |
| !!! | ATATAAAAAGACATGGTTTT+TGG | - | Chr5:52762728-52762747 | MsG0580027074.01.T01:CDS | 20.0% |
| !!! | GAAAGAAGAAAAAGTATTAA+GGG | - | Chr5:52763345-52763364 | MsG0580027074.01.T01:CDS | 20.0% |
| ! | ATTTCAGCATTTGAATTCTA+AGG | - | Chr5:52762639-52762658 | MsG0580027074.01.T01:CDS | 25.0% |
| ! | TAGAATTCAAATGCTGAAAT+GGG | + | Chr5:52762639-52762658 | None:intergenic | 25.0% |
| ! | TTAGAATTCAAATGCTGAAA+TGG | + | Chr5:52762640-52762659 | None:intergenic | 25.0% |
| !! | TCAAATATCATTCAAGTTCA+AGG | - | Chr5:52763382-52763401 | MsG0580027074.01.T01:CDS | 25.0% |
| !! | TGTGTTGATATAAAAAGACA+TGG | - | Chr5:52762721-52762740 | MsG0580027074.01.T01:CDS | 25.0% |
| !!! | GGAAAGAAGAAAAAGTATTA+AGG | - | Chr5:52763344-52763363 | MsG0580027074.01.T01:CDS | 25.0% |
| AATAAGAAGAACAAGGATTG+TGG | - | Chr5:52762775-52762794 | MsG0580027074.01.T01:CDS | 30.0% | |
| GAATGAAAGAGGAATTAAGA+GGG | - | Chr5:52763323-52763342 | MsG0580027074.01.T01:CDS | 30.0% | |
| TAGAAGAAATCACTTCTTCT+TGG | + | Chr5:52763039-52763058 | None:intergenic | 30.0% | |
| TAGGAAGAATAAGAAGAACA+AGG | - | Chr5:52762768-52762787 | MsG0580027074.01.T01:CDS | 30.0% | |
| TGAATGAAAGAGGAATTAAG+AGG | - | Chr5:52763322-52763341 | MsG0580027074.01.T01:CDS | 30.0% | |
| TTACTGTCTTAAAGAACGTT+TGG | - | Chr5:52762462-52762481 | MsG0580027074.01.T01:CDS | 30.0% | |
| ! | CTAAGAGAGAGTGATTTTAA+AGG | - | Chr5:52763135-52763154 | MsG0580027074.01.T01:CDS | 30.0% |
| !! | GAAGAAAAAGTATTAAGGGT+TGG | - | Chr5:52763349-52763368 | MsG0580027074.01.T01:CDS | 30.0% |
| AACAGAGCATGAATTTCGAT+TGG | + | Chr5:52762557-52762576 | None:intergenic | 35.0% | |
| AATTTCATGACACATGATGC+TGG | - | Chr5:52763255-52763274 | MsG0580027074.01.T01:CDS | 35.0% | |
| AGGTTCACTATGAATGAAAG+AGG | - | Chr5:52763312-52763331 | MsG0580027074.01.T01:CDS | 35.0% | |
| ATATTTGGATCTGAAGATGG+TGG | - | Chr5:52762901-52762920 | MsG0580027074.01.T01:CDS | 35.0% | |
| GCTATATTTGGATCTGAAGA+TGG | - | Chr5:52762898-52762917 | MsG0580027074.01.T01:CDS | 35.0% | |
| GGAGAATTGGGAAACTATTT+AGG | - | Chr5:52762749-52762768 | MsG0580027074.01.T01:CDS | 35.0% | |
| GTTTGATGTTAGAATCTGGT+AGG | - | Chr5:52762989-52763008 | MsG0580027074.01.T01:CDS | 35.0% | |
| TGAAGCTTATAGCAATGACA+TGG | - | Chr5:52762363-52762382 | MsG0580027074.01.T01:CDS | 35.0% | |
| TTCTTCTTTCTCTTGCATCT+TGG | + | Chr5:52762665-52762684 | None:intergenic | 35.0% | |
| TTGATGAGAAGAATGAGATG+TGG | - | Chr5:52762815-52762834 | MsG0580027074.01.T01:CDS | 35.0% | |
| ! | AAAGTATTAAGGGTTGGAGA+TGG | - | Chr5:52763355-52763374 | MsG0580027074.01.T01:CDS | 35.0% |
| ! | ACTGGTGTAATGGAAATTGA+TGG | - | Chr5:52763084-52763103 | MsG0580027074.01.T01:CDS | 35.0% |
| ! | GAAAATGGTAGAAAGAGTAC+TGG | - | Chr5:52763066-52763085 | MsG0580027074.01.T01:CDS | 35.0% |
| !! | AGACATGGTTTTTGGAGAAT+TGG | - | Chr5:52762736-52762755 | MsG0580027074.01.T01:CDS | 35.0% |
| !! | AGAGAGTGATTTTAAAGGCA+TGG | - | Chr5:52763140-52763159 | MsG0580027074.01.T01:CDS | 35.0% |
| !! | GACATGGTTTTTGGAGAATT+GGG | - | Chr5:52762737-52762756 | MsG0580027074.01.T01:CDS | 35.0% |
| !! | TAGAAAGAGTACTGGTGTAA+TGG | - | Chr5:52763074-52763093 | MsG0580027074.01.T01:CDS | 35.0% |
| AAGCTTGTGTGTTCAGATTG+TGG | - | Chr5:52762487-52762506 | MsG0580027074.01.T01:CDS | 40.0% | |
| AATTCATGCTCTGTTGAGGT+AGG | - | Chr5:52762562-52762581 | MsG0580027074.01.T01:CDS | 40.0% | |
| ATGTGGATGGTTGATCATCA+TGG | - | Chr5:52762832-52762851 | MsG0580027074.01.T01:CDS | 40.0% | |
| ATTTCTGCAGCTAGAAGTTC+AGG | - | Chr5:52762955-52762974 | MsG0580027074.01.T01:CDS | 40.0% | |
| CATCCTTCTTCTTCTTCTTC+TGG | - | Chr5:52762427-52762446 | MsG0580027074.01.T01:CDS | 40.0% | |
| GAAAGAAGAAGAAGAGGTTG+TGG | - | Chr5:52762675-52762694 | MsG0580027074.01.T01:CDS | 40.0% | |
| GAAGAAGGATGCTTCTTACA+TGG | + | Chr5:52762418-52762437 | None:intergenic | 40.0% | |
| GCAAGAGAAAGAAGAAGAAG+AGG | - | Chr5:52762669-52762688 | MsG0580027074.01.T01:CDS | 40.0% | |
| GGTGGTTTGATGTTAGAATC+TGG | - | Chr5:52762985-52763004 | MsG0580027074.01.T01:CDS | 40.0% | |
| GTTCAGATTGTGGAGAACAA+AGG | - | Chr5:52762497-52762516 | MsG0580027074.01.T01:CDS | 40.0% | |
| TCGAAATTCATGCTCTGTTG+AGG | - | Chr5:52762558-52762577 | MsG0580027074.01.T01:CDS | 40.0% | |
| TGAGAAGAATGAGATGTGGA+TGG | - | Chr5:52762819-52762838 | MsG0580027074.01.T01:CDS | 40.0% | |
| TTAGAATCTGGTAGGAGAAG+TGG | - | Chr5:52762997-52763016 | MsG0580027074.01.T01:CDS | 40.0% | |
| TTCAGAGGTGGAGCTATATT+TGG | - | Chr5:52762886-52762905 | MsG0580027074.01.T01:CDS | 40.0% | |
| TTGATGGAAGCAGCTACAAT+AGG | - | Chr5:52763100-52763119 | MsG0580027074.01.T01:CDS | 40.0% | |
| ! | AAGGATTGTGGTAGAAGTGT+TGG | - | Chr5:52762787-52762806 | MsG0580027074.01.T01:CDS | 40.0% |
| !! | ATCATCATGGAGGTGTTTCA+AGG | - | Chr5:52762845-52762864 | MsG0580027074.01.T01:CDS | 40.0% |
| !! | ATTGTGGTAGAAGTGTTGGT+GGG | - | Chr5:52762791-52762810 | MsG0580027074.01.T01:CDS | 40.0% |
| !! | GGTGGTGATTCAGTTTTATC+AGG | - | Chr5:52762919-52762938 | MsG0580027074.01.T01:CDS | 40.0% |
| !! | TCAGCTTTTGGAAGCATAAG+AGG | - | Chr5:52763228-52763247 | MsG0580027074.01.T01:CDS | 40.0% |
| AGAAGTTCAGGTGTGAATGG+TGG | - | Chr5:52762967-52762986 | MsG0580027074.01.T01:CDS | 45.0% | |
| AGATCTCTCTGCAGTTTCAG+AGG | - | Chr5:52762871-52762890 | MsG0580027074.01.T01:CDS | 45.0% | |
| CCTCCAGAAGAAGAAGAAGA+AGG | + | Chr5:52762433-52762452 | None:intergenic | 45.0% | |
| CCTTCTTCTTCTTCTTCTGG+AGG | - | Chr5:52762430-52762449 | MsG0580027074.01.T01:CDS | 45.0% | |
| GCTAGAAGTTCAGGTGTGAA+TGG | - | Chr5:52762964-52762983 | MsG0580027074.01.T01:CDS | 45.0% | |
| TGGATGGTTGATCATCATGG+AGG | - | Chr5:52762835-52762854 | MsG0580027074.01.T01:CDS | 45.0% | |
| TTCATGACACATGATGCTGG+TGG | - | Chr5:52763258-52763277 | MsG0580027074.01.T01:CDS | 45.0% | |
| ! | GCAGATACACTCTCAGCTTT+TGG | - | Chr5:52763216-52763235 | MsG0580027074.01.T01:CDS | 45.0% |
| ! | TCTGTTGAGGTAGGAAGTGT+TGG | - | Chr5:52762571-52762590 | MsG0580027074.01.T01:CDS | 45.0% |
| !! | GATTGTGGTAGAAGTGTTGG+TGG | - | Chr5:52762790-52762809 | MsG0580027074.01.T01:CDS | 45.0% |
| !! | GCTTTTGGAAGCATAAGAGG+TGG | - | Chr5:52763231-52763250 | MsG0580027074.01.T01:CDS | 45.0% |
| ATGACACATGATGCTGGTGG+TGG | - | Chr5:52763261-52763280 | MsG0580027074.01.T01:CDS | 50.0% | |
| TCTCTCTGCAGTTTCAGAGG+TGG | - | Chr5:52762874-52762893 | MsG0580027074.01.T01:CDS | 50.0% | |
| !! | GAGGTGATGGAGGTTCATGT+AGG | - | Chr5:52763292-52763311 | MsG0580027074.01.T01:CDS | 50.0% |
| !! | ACACATGATGCTGGTGGTGG+TGG | - | Chr5:52763264-52763283 | MsG0580027074.01.T01:CDS | 55.0% |
| !! | CATGATGCTGGTGGTGGTGG+TGG | - | Chr5:52763267-52763286 | MsG0580027074.01.T01:CDS | 60.0% |
| !! | GATGCTGGTGGTGGTGGTGG+TGG | - | Chr5:52763270-52763289 | MsG0580027074.01.T01:CDS | 65.0% |
| !! | GGTGGTGGTGGAGGTGATGG+AGG | - | Chr5:52763282-52763301 | MsG0580027074.01.T01:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGAGGTGA+TGG | - | Chr5:52763279-52763298 | MsG0580027074.01.T01:CDS | 65.0% |
| !! | GCTGGTGGTGGTGGTGGTGG+AGG | - | Chr5:52763273-52763292 | MsG0580027074.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 52762340 | 52763437 | 52762340 | ID=MsG0580027074.01;Name=MsG0580027074.01 |
| Chr5 | mRNA | 52762340 | 52763437 | 52762340 | ID=MsG0580027074.01.T01;Parent=MsG0580027074.01;Name=MsG0580027074.01.T01;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|365 |
| Chr5 | exon | 52762340 | 52763437 | 52762340 | ID=MsG0580027074.01.T01:exon:17364;Parent=MsG0580027074.01.T01 |
| Chr5 | CDS | 52762340 | 52763437 | 52762340 | ID=MsG0580027074.01.T01:cds;Parent=MsG0580027074.01.T01 |
| Gene Sequence |
| Protein sequence |
