AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005005.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005005.01.T01 MTR_1g090867 70.361 388 32 8 1 308 1 385 2.11e-174 488
MsG0180005005.01.T01 MTR_3g094300 50.538 93 45 1 114 205 164 256 1.76e-21 92.4
MsG0180005005.01.T01 MTR_7g034465 29.327 208 108 9 103 280 291 489 2.69e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005005.01.T01 AT3G52180 58.095 210 68 1 113 302 69 278 2.08e-84 256
MsG0180005005.01.T01 AT3G52180 58.373 209 67 1 113 301 164 372 2.34e-83 256
MsG0180005005.01.T01 AT3G52180 71.795 117 33 0 113 229 164 280 7.80e-56 182
MsG0180005005.01.T01 AT3G52180 71.795 117 33 0 113 229 164 280 1.25e-55 182
MsG0180005005.01.T01 AT3G10940 46.739 92 48 1 115 205 161 252 2.82e-20 89.0
MsG0180005005.01.T01 AT3G01510 28.856 201 103 7 102 271 208 399 8.63e-15 75.1
MsG0180005005.01.T01 AT3G01510 28.856 201 103 7 102 271 208 399 8.63e-15 75.1
MsG0180005005.01.T01 AT3G01510 28.856 201 103 7 102 271 350 541 1.30e-14 74.7

Find 100 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTACGGTGGAAATTTC+AGG 0.182783 1:-85560980 MsG0180005005.01.T01:CDS
TTCAGTTGGCATATATGTTT+TGG 0.189491 1:-85562173 MsG0180005005.01.T01:intron
AAACAGAATAATAGAGTTTC+TGG 0.199837 1:-85559404 MsG0180005005.01.T01:CDS
TTTATTTGTGCATGGTTTAT+TGG 0.219530 1:+85559162 None:intergenic
CTTTGGTACTTAAAGCTTAC+AGG 0.220091 1:-85561046 MsG0180005005.01.T01:intron
GTTACAGTTAGTGTAAATTT+AGG 0.222616 1:-85559253 MsG0180005005.01.T01:three_prime_UTR
GTTGACATGGCCATCTTTAT+TGG 0.230768 1:+85559789 None:intergenic
TTTCTTGTGCAGGCTGCTTC+TGG 0.237212 1:-85564551 MsG0180005005.01.T01:intron
GAAATTTCAGGACTTGATAT+TGG 0.272062 1:-85560968 MsG0180005005.01.T01:CDS
AACATTGATTTGCAGATGTC+TGG 0.304328 1:+85559056 None:intergenic
TATAAGGCAATTAATTCTAA+TGG 0.309780 1:-85563054 MsG0180005005.01.T01:CDS
TATCAATTGAGTTATACTTA+TGG 0.315474 1:-85559025 MsG0180005005.01.T01:three_prime_UTR
GGTGAACTGAAACTGAAATT+TGG 0.325877 1:-85565882 MsG0180005005.01.T01:five_prime_UTR
TGTAATTAGCAAATTATATA+AGG 0.327149 1:-85563070 MsG0180005005.01.T01:CDS
ATCAATTGAGTTATACTTAT+GGG 0.347623 1:-85559024 MsG0180005005.01.T01:three_prime_UTR
TGATCTACGAAAGCGGCTTC+CGG 0.349920 1:-85563094 MsG0180005005.01.T01:CDS
TTGACATGGCCATCTTTATT+GGG 0.352754 1:+85559790 None:intergenic
CGTTCATCCTTCGTGAGATC+AGG 0.360339 1:+85559427 None:intergenic
TTCTTCTTCTTCTCTATCCC+TGG 0.361202 1:-85565627 MsG0180005005.01.T01:intron
TGAGGCTAATACACTACTTC+TGG 0.368444 1:-85562130 MsG0180005005.01.T01:intron
TCAACAAGCAAGTGCATTGA+TGG 0.383583 1:+85559354 None:intergenic
CAGTGGCCGTGCCTCCCTTC+GGG 0.392669 1:-85559470 MsG0180005005.01.T01:CDS
AATAAATAGACTCACAATAT+CGG 0.395842 1:+85561484 None:intergenic
ACACTTTAAATGTGGAGAAT+TGG 0.404960 1:-85559097 MsG0180005005.01.T01:three_prime_UTR
AAAGTGACAGGCTTCTTACT+AGG 0.410763 1:+85561022 None:intergenic
GATGGTTCAGAGATCCTCAT+TGG 0.427242 1:+85559372 None:intergenic
ACAGTGGCCGTGCCTCCCTT+CGG 0.430443 1:-85559471 MsG0180005005.01.T01:CDS
CATTCCAACCATGCTACTTA+AGG 0.435096 1:-85565491 MsG0180005005.01.T01:intron
ACATATATACATTGCACTGC+TGG 0.440089 1:-85563024 MsG0180005005.01.T01:CDS
GTAACTGTCTTGTGTTGTGT+GGG 0.447773 1:+85565908 None:intergenic
TTTCAGGACTTGATATTGGA+TGG 0.457996 1:-85560964 MsG0180005005.01.T01:CDS
GAGTACAAGTACATTGTTGA+TGG 0.462857 1:-85559850 MsG0180005005.01.T01:CDS
TTTAACATTAAAATAAAGCT+TGG 0.469783 1:+85564395 None:intergenic
AAGGTCATGCTGTCCAAAGC+TGG 0.475543 1:-85561528 MsG0180005005.01.T01:CDS
AAGATATTGTGGTGGCGAGC+AGG 0.477727 1:+85565662 None:intergenic
TCCCTTCGGGAGAGAGTGAC+TGG 0.483806 1:-85559457 MsG0180005005.01.T01:CDS
ATACATTGCACTGCTGGACT+TGG 0.499456 1:-85563018 MsG0180005005.01.T01:CDS
AAGAGACATACCGCAACAGC+TGG 0.503978 1:+85562988 None:intergenic
AGTACATTGTTGATGGAGAA+TGG 0.504240 1:-85559843 MsG0180005005.01.T01:CDS
TTCAGGACTTGATATTGGAT+GGG 0.505174 1:-85560963 MsG0180005005.01.T01:CDS
TTCAGAATCTGAATCTTCCC+AGG 0.507017 1:-85565810 MsG0180005005.01.T01:intron
ATGGCCATCTTTATTGGGAG+AGG 0.509356 1:+85559795 None:intergenic
TCAGGACTTGATATTGGATG+GGG 0.510634 1:-85560962 MsG0180005005.01.T01:CDS
TCTTGTGTTGTGTGGGGCAG+CGG 0.510674 1:+85565915 None:intergenic
ACATTGATTTGCAGATGTCT+GGG 0.514243 1:+85559057 None:intergenic
TGTGGAGAATTGGAGAATCA+TGG 0.514741 1:-85559087 MsG0180005005.01.T01:three_prime_UTR
TGTGCATATTTATTTGTGCA+TGG 0.515182 1:+85559154 None:intergenic
CTTCGATAAAATTGTTGACA+TGG 0.518353 1:+85559776 None:intergenic
ATGACAGAAGCCATGGGTGC+TGG 0.521445 1:-85564455 MsG0180005005.01.T01:CDS
ATGGTTCAGAGATCCTCATT+GGG 0.525064 1:+85559373 None:intergenic
CTGTAACAGAGAGCTTAGTA+AGG 0.526236 1:+85559269 None:intergenic
GTTACCTTAAGTAGCATGGT+TGG 0.527020 1:+85565487 None:intergenic
TTGTGGTGGCGAGCAGGAAG+AGG 0.530076 1:+85565668 None:intergenic
TGTAACTGTCTTGTGTTGTG+TGG 0.532380 1:+85565907 None:intergenic
TGTCCCCACGACAAAGTGAC+AGG 0.532631 1:+85561010 None:intergenic
TATAATTTGCTAATTACAGC+CGG 0.535250 1:+85563075 None:intergenic
TGAAGTTACCTTAAGTAGCA+TGG 0.535870 1:+85565483 None:intergenic
ATGAAGGAAGAAAGATATTG+TGG 0.535955 1:+85565651 None:intergenic
GAGGAGGAGCAGATAGTGTG+TGG 0.537058 1:+85565687 None:intergenic
TAGCTCTGATGTCGAGGAGG+AGG 0.541130 1:-85564504 MsG0180005005.01.T01:CDS
GTTAGTGTAAATTTAGGATG+CGG 0.542044 1:-85559247 MsG0180005005.01.T01:three_prime_UTR
GTAACCTCTCCCAATAAAGA+TGG 0.550991 1:-85559799 MsG0180005005.01.T01:CDS
GGGACACCGCAATTGCTCTA+CGG 0.552218 1:-85560993 MsG0180005005.01.T01:CDS
CTCTCTCCCGAAGGGAGGCA+CGG 0.552342 1:+85559464 None:intergenic
TCTGGAAGCTCTTCCCAATG+AGG 0.552898 1:-85559386 MsG0180005005.01.T01:CDS
GACAAGTAGCTCTGATGTCG+AGG 0.561197 1:-85564510 MsG0180005005.01.T01:CDS
TAATAACATGACAGAAGCCA+TGG 0.567902 1:-85564462 MsG0180005005.01.T01:CDS
TGGAAGAGCTCCAGCTGTTG+CGG 0.568883 1:-85562998 MsG0180005005.01.T01:intron
AAGTGACAGGCTTCTTACTA+GGG 0.570425 1:+85561023 None:intergenic
CACCAGTCACTCTCTCCCGA+AGG 0.571656 1:+85559455 None:intergenic
TGGTGGCGAGCAGGAAGAGG+AGG 0.575579 1:+85565671 None:intergenic
GAGCTACTTGTCTCTGCACT+CGG 0.576263 1:+85564521 None:intergenic
TGTGTGGGGCAGCGGTCACA+AGG 0.580469 1:+85565923 None:intergenic
GGCCACTGTCCGCATCATCA+AGG 0.584686 1:+85559485 None:intergenic
GAAGCCTGTCACTTTGTCGT+GGG 0.585071 1:-85561014 MsG0180005005.01.T01:CDS
ATTAAACATACCAGCACCCA+TGG 0.588156 1:+85564445 None:intergenic
ACCAGTCACTCTCTCCCGAA+GGG 0.593295 1:+85559456 None:intergenic
AGAAGCCTGTCACTTTGTCG+TGG 0.601786 1:-85561015 MsG0180005005.01.T01:CDS
TGAACAGGTCCTTGATGATG+CGG 0.604730 1:-85559494 MsG0180005005.01.T01:intron
GTCCTTGATGATGCGGACAG+TGG 0.606712 1:-85559487 MsG0180005005.01.T01:CDS
TTTCCACCGTAGAGCAATTG+CGG 0.609902 1:+85560987 None:intergenic
AAGGCAATTAATTCTAATGG+AGG 0.612848 1:-85563051 MsG0180005005.01.T01:CDS
GTGGAGAATTGGAGAATCAT+GGG 0.613059 1:-85559086 MsG0180005005.01.T01:three_prime_UTR
AGATTCGCACACTTTAAATG+TGG 0.619998 1:-85559105 MsG0180005005.01.T01:three_prime_UTR
TGTGTGGAATTGTAAAACAG+AGG 0.637298 1:+85565703 None:intergenic
ATTCATTTGATCTACGAAAG+CGG 0.641783 1:-85563101 MsG0180005005.01.T01:CDS
AAGGAAGAAAGATATTGTGG+TGG 0.657505 1:+85565654 None:intergenic
AAGTAGCTCTGATGTCGAGG+AGG 0.659228 1:-85564507 MsG0180005005.01.T01:CDS
ACACCGCAATTGCTCTACGG+TGG 0.661178 1:-85560990 MsG0180005005.01.T01:CDS
AGTCACTCTCTCCCGAAGGG+AGG 0.664364 1:+85559459 None:intergenic
GTGGAATTGTAAAACAGAGG+AGG 0.665928 1:+85565706 None:intergenic
ACAACACAAGACAGTTACAC+AGG 0.666722 1:-85565903 MsG0180005005.01.T01:five_prime_UTR
CAGGACTTGATATTGGATGG+GGG 0.671888 1:-85560961 MsG0180005005.01.T01:CDS
AAGCCTGTCACTTTGTCGTG+GGG 0.672587 1:-85561013 MsG0180005005.01.T01:CDS
AATAACATGACAGAAGCCAT+GGG 0.682029 1:-85564461 MsG0180005005.01.T01:CDS
TAACTGTCTTGTGTTGTGTG+GGG 0.685933 1:+85565909 None:intergenic
TCAGGGTTATAAACTCAATG+AGG 0.689279 1:-85562148 MsG0180005005.01.T01:CDS
ATGTCTGTATCATAGTGCGG+TGG 0.699931 1:-85559130 MsG0180005005.01.T01:three_prime_UTR
TGATGATCCTGATCTCACGA+AGG 0.730198 1:-85559434 MsG0180005005.01.T01:CDS
CAAATGTCTGTATCATAGTG+CGG 0.747227 1:-85559133 MsG0180005005.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTAATTTTACATTAAA+CGG + Chr1:85564926-85564945 None:intergenic 10.0%
!!! ATAAGAAAAATATCAATTTT+AGG + Chr1:85562568-85562587 None:intergenic 10.0%
!!! ATTTATTCAAAACATTTTAT+AGG - Chr1:85564618-85564637 MsG0180005005.01.T01:intron 10.0%
!! AAAAAATACTAATAAAAAGG+TGG - Chr1:85559027-85559046 MsG0180005005.01.T01:three_prime_UTR 15.0%
!! AAGGAAAAAATAAAAAGTAA+AGG + Chr1:85559545-85559564 None:intergenic 15.0%
!! ATAATATCAAATAAGAATGA+GGG + Chr1:85563219-85563238 None:intergenic 15.0%
!! ATCAACAATACAATAAAATA+AGG - Chr1:85564583-85564602 MsG0180005005.01.T01:intron 15.0%
!! CATAATAAACAAAATTGTTT+AGG + Chr1:85561312-85561331 None:intergenic 15.0%
!! CATTAACTTTCTAAATTAAA+AGG + Chr1:85564114-85564133 None:intergenic 15.0%
!! TATAATATCAAATAAGAATG+AGG + Chr1:85563220-85563239 None:intergenic 15.0%
!! TCAACAATACAATAAAATAA+GGG - Chr1:85564584-85564603 MsG0180005005.01.T01:intron 15.0%
!! TGTAATTAGCAAATTATATA+AGG - Chr1:85561931-85561950 MsG0180005005.01.T01:intron 15.0%
!! TTTAACATTAAAATAAAGCT+TGG + Chr1:85560609-85560628 None:intergenic 15.0%
!! TTTGTTTATATAGAAAGATA+GGG - Chr1:85562529-85562548 MsG0180005005.01.T01:intron 15.0%
!!! ATTTATATATAACTTTGAAG+AGG + Chr1:85559629-85559648 None:intergenic 15.0%
!!! TTAATACTAGTTAGATATTT+TGG - Chr1:85561396-85561415 MsG0180005005.01.T01:intron 15.0%
!!! TTTTGTTTATATAGAAAGAT+AGG - Chr1:85562528-85562547 MsG0180005005.01.T01:intron 15.0%
!! AAACATGATAAATGTTGTAA+TGG + Chr1:85564206-85564225 None:intergenic 20.0%
!! AAAGGAAAACATTTGTTTAA+TGG + Chr1:85563758-85563777 None:intergenic 20.0%
!! AAGATAAAGTGATTTATGTT+TGG - Chr1:85559733-85559752 MsG0180005005.01.T01:intron 20.0%
!! AATAAATAGACTCACAATAT+CGG + Chr1:85563520-85563539 None:intergenic 20.0%
!! ACTTAGTTATTTGTGAATTA+TGG - Chr1:85563141-85563160 MsG0180005005.01.T01:intron 20.0%
!! ATAAAAATAAAAGAAGTCAG+AGG + Chr1:85561195-85561214 None:intergenic 20.0%
!! ATCAATTGAGTTATACTTAT+GGG - Chr1:85565977-85565996 MsG0180005005.01.T01:five_prime_UTR 20.0%
!! ATGCAAATATTATAAACACA+AGG + Chr1:85560928-85560947 None:intergenic 20.0%
!! CATTAACCATTATTTATCTT+TGG - Chr1:85563938-85563957 MsG0180005005.01.T01:intron 20.0%
!! CTTAGTTTATTTCAATAAAC+CGG - Chr1:85565082-85565101 MsG0180005005.01.T01:intron 20.0%
!! GATAAATATCACTTGAAATT+TGG + Chr1:85562768-85562787 None:intergenic 20.0%
!! TAAGTACCAAAGATAAATAA+TGG + Chr1:85563947-85563966 None:intergenic 20.0%
!! TATAAGGCAATTAATTCTAA+TGG - Chr1:85561947-85561966 MsG0180005005.01.T01:intron 20.0%
!! TATCAATTGAGTTATACTTA+TGG - Chr1:85565976-85565995 MsG0180005005.01.T01:five_prime_UTR 20.0%
!! TTAAAACACAAGAAAATTTC+TGG - Chr1:85562472-85562491 MsG0180005005.01.T01:intron 20.0%
!! TTAACATTTCTATTTACTCA+TGG - Chr1:85561775-85561794 MsG0180005005.01.T01:intron 20.0%
!! TTAATATGTTGTACAAAGAA+AGG - Chr1:85562139-85562158 MsG0180005005.01.T01:CDS 20.0%
!! TTTATATCAACTCGAATATT+TGG - Chr1:85563876-85563895 MsG0180005005.01.T01:intron 20.0%
!!! AATCAAACATTCTTGTTTTT+GGG + Chr1:85560382-85560401 None:intergenic 20.0%
!!! ACATGGAGATATTTTTTAAA+TGG - Chr1:85564141-85564160 MsG0180005005.01.T01:intron 20.0%
!!! AGAAATTTTCTTGTGTTTTA+AGG + Chr1:85562473-85562492 None:intergenic 20.0%
!!! AGAATTGATTTTATCATATC+TGG + Chr1:85559959-85559978 None:intergenic 20.0%
!!! ATATTCGAGTTGATATAAAA+AGG + Chr1:85563875-85563894 None:intergenic 20.0%
!!! ATTTGATGATTAATTCTTCT+TGG - Chr1:85563371-85563390 MsG0180005005.01.T01:intron 20.0%
!!! ATTTTGAGTGAATTGATTTA+AGG - Chr1:85559882-85559901 MsG0180005005.01.T01:intron 20.0%
!!! TAATCAAACATTCTTGTTTT+TGG + Chr1:85560383-85560402 None:intergenic 20.0%
!!! TATGTTTTTGAGTTAATTCT+TGG - Chr1:85562091-85562110 MsG0180005005.01.T01:intron 20.0%
!!! TATTCGAGTTGATATAAAAA+GGG + Chr1:85563874-85563893 None:intergenic 20.0%
!!! TTACAACATTTATCATGTTT+TGG - Chr1:85564206-85564225 MsG0180005005.01.T01:intron 20.0%
! AAACAGAATAATAGAGTTTC+TGG - Chr1:85565597-85565616 MsG0180005005.01.T01:intron 25.0%
! AAAGTTAATGCTACATTACA+TGG - Chr1:85564124-85564143 MsG0180005005.01.T01:intron 25.0%
! AAATTCCAACAGAAAAACAA+AGG + Chr1:85564249-85564268 None:intergenic 25.0%
! AAGTCACTAAAGTTTAATTC+AGG + Chr1:85562979-85562998 None:intergenic 25.0%
! AGCTATATGACATAAAGAAA+GGG + Chr1:85563339-85563358 None:intergenic 25.0%
! ATAATCATTGAAGAGCTTAT+CGG - Chr1:85561546-85561565 MsG0180005005.01.T01:intron 25.0%
! ATCATATCTGGATGATTTAA+AGG + Chr1:85559947-85559966 None:intergenic 25.0%
! ATGCTATTGAGAAATCTAAA+AGG + Chr1:85560031-85560050 None:intergenic 25.0%
! ATTGAAGCTATTATACCATT+TGG + Chr1:85564897-85564916 None:intergenic 25.0%
! ATTTATCAGTTTATCTCCAT+TGG - Chr1:85562781-85562800 MsG0180005005.01.T01:intron 25.0%
! CAATTTCAATTTCAATTTCG+AGG - Chr1:85559585-85559604 MsG0180005005.01.T01:intron 25.0%
! CTATGCAGTTGTTAATTTAA+AGG - Chr1:85564524-85564543 MsG0180005005.01.T01:CDS 25.0%
! CTCTCTTAATACATTAGTAA+TGG - Chr1:85559419-85559438 MsG0180005005.01.T01:CDS 25.0%
! GACTGTATTTAATAACCAAA+TGG - Chr1:85564879-85564898 MsG0180005005.01.T01:intron 25.0%
! GTTACAGTTAGTGTAAATTT+AGG - Chr1:85565748-85565767 MsG0180005005.01.T01:intron 25.0%
! TAAAGTGATTTATGTTTGGA+TGG - Chr1:85559737-85559756 MsG0180005005.01.T01:intron 25.0%
! TAAAGTTTAATTCAGGCAAT+TGG + Chr1:85562972-85562991 None:intergenic 25.0%
! TCAAATTAGAACTACAAAGT+AGG + Chr1:85560742-85560761 None:intergenic 25.0%
! TCTCTCTATCTTATGTATAT+GGG - Chr1:85564853-85564872 MsG0180005005.01.T01:intron 25.0%
! TCTGTTAAGAATTTAGTTGT+CGG - Chr1:85565035-85565054 MsG0180005005.01.T01:intron 25.0%
! TGTTTGTCATCGAAATTTAA+GGG + Chr1:85564449-85564468 None:intergenic 25.0%
! TTAAATTTCGATGACAAACA+GGG - Chr1:85564449-85564468 MsG0180005005.01.T01:CDS 25.0%
! TTATGTAGCAAATTTGTCAA+GGG - Chr1:85563656-85563675 MsG0180005005.01.T01:intron 25.0%
! TTATTTGTGAATTATGGAAC+AGG - Chr1:85563147-85563166 MsG0180005005.01.T01:intron 25.0%
! TTCTCTCTATCTTATGTATA+TGG - Chr1:85564852-85564871 MsG0180005005.01.T01:intron 25.0%
! TTCTGATTCTTTATATGCTA+AGG - Chr1:85563278-85563297 MsG0180005005.01.T01:intron 25.0%
! TTTATGTAGCAAATTTGTCA+AGG - Chr1:85563655-85563674 MsG0180005005.01.T01:intron 25.0%
! TTTATTTGTGCATGGTTTAT+TGG + Chr1:85565842-85565861 None:intergenic 25.0%
!! ACAAATGTTTTCCTTTGAAT+AGG - Chr1:85563762-85563781 MsG0180005005.01.T01:intron 25.0%
!! ACTCTATCTTCATAGTATTT+TGG + Chr1:85562657-85562676 None:intergenic 25.0%
!! ATCATTTAAAACAGGGAATT+CGG + Chr1:85560108-85560127 None:intergenic 25.0%
!! ATTATACATTAGGGCTTTTA+TGG - Chr1:85562428-85562447 MsG0180005005.01.T01:intron 25.0%
!! CATCTAATAAAGTAGCTTTA+TGG - Chr1:85564816-85564835 MsG0180005005.01.T01:intron 25.0%
!! GCTTTTATGGTTGTATTTTA+GGG - Chr1:85562441-85562460 MsG0180005005.01.T01:intron 25.0%
!!! AAAAAACTCAGAAGCATTTT+GGG - Chr1:85560773-85560792 MsG0180005005.01.T01:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + Chr1:85559846-85559865 None:intergenic 25.0%
!!! ATCTTCATAGTATTTTGGAT+TGG + Chr1:85562652-85562671 None:intergenic 25.0%
!!! ATTCTTTTTTGAGTCATTAG+AGG - Chr1:85565436-85565455 MsG0180005005.01.T01:intron 25.0%
!!! ATTGTTTTACTCAAAAACTG+AGG - Chr1:85563249-85563268 MsG0180005005.01.T01:intron 25.0%
!!! CATATGTTGGTTTTCAATTT+TGG + Chr1:85560000-85560019 None:intergenic 25.0%
!!! GTTTCTTTTTGTTTCACTTA+TGG - Chr1:85561132-85561151 MsG0180005005.01.T01:intron 25.0%
!!! GTTTTTGAGTAAAACAATTG+AGG + Chr1:85563247-85563266 None:intergenic 25.0%
!!! TATAATTTGCTAATTACAGC+CGG + Chr1:85561929-85561948 None:intergenic 25.0%
AAGCAGTTTACTAGTTAATG+GGG + Chr1:85564176-85564195 None:intergenic 30.0%
AAGGCAATTAATTCTAATGG+AGG - Chr1:85561950-85561969 MsG0180005005.01.T01:intron 30.0%
AAGTTTCAACTACGTAGTTT+AGG - Chr1:85565256-85565275 MsG0180005005.01.T01:intron 30.0%
ACACTTTAAATGTGGAGAAT+TGG - Chr1:85565904-85565923 MsG0180005005.01.T01:five_prime_UTR 30.0%
AGAGATAGAAAAACAAATCC+AGG + Chr1:85564728-85564747 None:intergenic 30.0%
AGATAACCTATGTGTATTGA+AGG - Chr1:85560080-85560099 MsG0180005005.01.T01:intron 30.0%
ATGAAGGAAGAAAGATATTG+TGG + Chr1:85559353-85559372 None:intergenic 30.0%
ATTCATTTGATCTACGAAAG+CGG - Chr1:85561900-85561919 MsG0180005005.01.T01:intron 30.0%
ATTGAGTGATGTAATTCTGT+AGG - Chr1:85560230-85560249 MsG0180005005.01.T01:intron 30.0%
ATTTGCATTCGACTCAAATT+TGG - Chr1:85560940-85560959 MsG0180005005.01.T01:intron 30.0%
ATTTGCATTTCAGACTGTTA+TGG - Chr1:85564967-85564986 MsG0180005005.01.T01:intron 30.0%
CACATGAAGTAGAAGTTATT+AGG + Chr1:85560406-85560425 None:intergenic 30.0%
CCCTAATGTATAATTAACGA+CGG + Chr1:85562422-85562441 None:intergenic 30.0%
CCGTCGTTAATTATACATTA+GGG - Chr1:85562419-85562438 MsG0180005005.01.T01:intron 30.0%
CTGTTTGTCATCGAAATTTA+AGG + Chr1:85564450-85564469 None:intergenic 30.0%
CTTAAATTTCGATGACAAAC+AGG - Chr1:85564448-85564467 MsG0180005005.01.T01:CDS 30.0%
CTTCGATAAAATTGTTGACA+TGG + Chr1:85565228-85565247 None:intergenic 30.0%
GAAATTTCAGGACTTGATAT+TGG - Chr1:85564033-85564052 MsG0180005005.01.T01:intron 30.0%
GAAGCAGTTTACTAGTTAAT+GGG + Chr1:85564177-85564196 None:intergenic 30.0%
GACTGTCCAATCTAAATAAA+TGG + Chr1:85560200-85560219 None:intergenic 30.0%
GACTGTTATGGAATAATTAC+AGG - Chr1:85564979-85564998 MsG0180005005.01.T01:intron 30.0%
GAGAAAATCAATCTATCAGT+TGG + Chr1:85563181-85563200 None:intergenic 30.0%
GAGAAAGAGTCTAATTTAAG+AGG + Chr1:85560702-85560721 None:intergenic 30.0%
GAGATAGAAAAACAAATCCA+GGG + Chr1:85564727-85564746 None:intergenic 30.0%
GAGCTATATGACATAAAGAA+AGG + Chr1:85563340-85563359 None:intergenic 30.0%
GTATCAGAATATTACGATGA+AGG + Chr1:85564290-85564309 None:intergenic 30.0%
GTTAATTCTTGGTATACTGA+AGG - Chr1:85562102-85562121 MsG0180005005.01.T01:intron 30.0%
GTTATGGAATAATTACAGGA+TGG - Chr1:85564983-85565002 MsG0180005005.01.T01:intron 30.0%
GTTTAGCACATTGTTAGAAA+GGG + Chr1:85561033-85561052 None:intergenic 30.0%
TAATATTAGCGAACATGTGA+AGG + Chr1:85560895-85560914 None:intergenic 30.0%
TAATCATTGAAGAGCTTATC+GGG - Chr1:85561547-85561566 MsG0180005005.01.T01:intron 30.0%
TAGTTGCATCACTATCAAAT+TGG - Chr1:85563093-85563112 MsG0180005005.01.T01:CDS 30.0%
TCACTATCAAATTGGAAATC+TGG - Chr1:85563101-85563120 MsG0180005005.01.T01:CDS 30.0%
TCCAATATTTCTTGTAATGC+TGG - Chr1:85559454-85559473 MsG0180005005.01.T01:CDS 30.0%
TCCAGCATTACAAGAAATAT+TGG + Chr1:85559458-85559477 None:intergenic 30.0%
TGAAGCAGTTTACTAGTTAA+TGG + Chr1:85564178-85564197 None:intergenic 30.0%
TGTGCATATTTATTTGTGCA+TGG + Chr1:85565850-85565869 None:intergenic 30.0%
TGTTTAGCACATTGTTAGAA+AGG + Chr1:85561034-85561053 None:intergenic 30.0%
TTAGCAATCAATGATGTTGA+TGG - Chr1:85560255-85560274 MsG0180005005.01.T01:intron 30.0%
TTCTTCATATTCAATGTACC+AGG - Chr1:85565117-85565136 MsG0180005005.01.T01:intron 30.0%
TTGACTTATAGGCATGAATT+AGG - Chr1:85561057-85561076 MsG0180005005.01.T01:intron 30.0%
TTTCCTTTGAATAGGAATCA+TGG - Chr1:85563770-85563789 MsG0180005005.01.T01:intron 30.0%
TTTGCTCTGCAAGAATAAAA+AGG + Chr1:85563454-85563473 None:intergenic 30.0%
! AAAAAGTGCATGACATACAA+TGG + Chr1:85561848-85561867 None:intergenic 30.0%
! AACATCTGGACATCTTTTTA+TGG + Chr1:85563592-85563611 None:intergenic 30.0%
! AATTGATAGCTGAAGTTGAA+AGG + Chr1:85559564-85559583 None:intergenic 30.0%
! AGCTGAGATCATTTAAAACA+GGG + Chr1:85560115-85560134 None:intergenic 30.0%
! ATAAAAAGGTGGTAGTGAAA+AGG - Chr1:85559038-85559057 MsG0180005005.01.T01:three_prime_UTR 30.0%
! ATGATCTCAGCTGTTAATTT+TGG - Chr1:85560123-85560142 MsG0180005005.01.T01:intron 30.0%
! ATTTTACTTCTCACAGCTTA+TGG - Chr1:85561640-85561659 MsG0180005005.01.T01:intron 30.0%
! CAAAGTAATAGATTTTTGCG+CGG + Chr1:85561603-85561622 None:intergenic 30.0%
! GGCTTTTATGGTTGTATTTT+AGG - Chr1:85562440-85562459 MsG0180005005.01.T01:intron 30.0%
! GTTAGTGTAAATTTAGGATG+CGG - Chr1:85565754-85565773 MsG0180005005.01.T01:intron 30.0%
! GTTGATAAACTGCGTAAAAT+CGG - Chr1:85561240-85561259 MsG0180005005.01.T01:intron 30.0%
! TAAAAAGGTGGTAGTGAAAA+GGG - Chr1:85559039-85559058 MsG0180005005.01.T01:three_prime_UTR 30.0%
! TATAATTAACGACGGCTTTT+TGG + Chr1:85562414-85562433 None:intergenic 30.0%
! TCAGTTGGCATATATGTTTT+GGG - Chr1:85562829-85562848 MsG0180005005.01.T01:intron 30.0%
! TCTCTGCCATTTATTTAGAT+TGG - Chr1:85560191-85560210 MsG0180005005.01.T01:intron 30.0%
! TGAAGAAACTTATTTCTCAC+CGG + Chr1:85565104-85565123 None:intergenic 30.0%
! TTCAGTTGGCATATATGTTT+TGG - Chr1:85562828-85562847 MsG0180005005.01.T01:intron 30.0%
! TTTTACTTCTCACAGCTTAT+GGG - Chr1:85561641-85561660 MsG0180005005.01.T01:intron 30.0%
! TTTTATTCTTGCAGAGCAAA+AGG - Chr1:85563454-85563473 MsG0180005005.01.T01:intron 30.0%
! TTTTATTGTTTCACATCTCG+TGG - Chr1:85562915-85562934 MsG0180005005.01.T01:intron 30.0%
!! AGAATACTGAAGAAAGTGTT+AGG + Chr1:85560675-85560694 None:intergenic 30.0%
!! TCTGAAATGCAAATTTTGTC+TGG + Chr1:85564961-85564980 None:intergenic 30.0%
!! TTCTAGAGTAGAATTCATTC+TGG + Chr1:85559820-85559839 None:intergenic 30.0%
!!! AAAAACTCAGAAGCATTTTG+GGG - Chr1:85560774-85560793 MsG0180005005.01.T01:intron 30.0%
!!! ACAGTTTGTTTTGTTTCAGT+TGG - Chr1:85562814-85562833 MsG0180005005.01.T01:intron 30.0%
!!! ATGTTGGTTTTCAATTTTGG+AGG + Chr1:85559997-85560016 None:intergenic 30.0%
!!! CAAAAAACTCAGAAGCATTT+TGG - Chr1:85560772-85560791 MsG0180005005.01.T01:intron 30.0%
!!! CACATGTTTTTTTTACCATC+TGG - Chr1:85565399-85565418 MsG0180005005.01.T01:intron 30.0%
!!! CACTTTTTCACATTATATCG+TGG - Chr1:85561860-85561879 MsG0180005005.01.T01:intron 30.0%
!!! GCTAAACAGTTTTGACTTAT+AGG - Chr1:85561046-85561065 MsG0180005005.01.T01:intron 30.0%
!!! GCTTCTGAGTTTTTTGTTTT+TGG + Chr1:85560768-85560787 None:intergenic 30.0%
!!! GTTTGGTTTTAGTGTATGTT+CGG - Chr1:85559654-85559673 MsG0180005005.01.T01:intron 30.0%
!!! TGTTGGTTTTCAATTTTGGA+GGG + Chr1:85559996-85560015 None:intergenic 30.0%
!!! TTTTGAAACGTTGCACATTT+TGG - Chr1:85560279-85560298 MsG0180005005.01.T01:intron 30.0%
AAAGAAAGCTAGCTAGAAGT+AGG - Chr1:85560330-85560349 MsG0180005005.01.T01:intron 35.0%
AAAGGCTACTAAGCATATGT+TGG + Chr1:85560013-85560032 None:intergenic 35.0%
AACTCAAAGTTTGAGCTTTG+TGG - Chr1:85562608-85562627 MsG0180005005.01.T01:intron 35.0%
AAGGAAGAAAGATATTGTGG+TGG + Chr1:85559350-85559369 None:intergenic 35.0%
AATAACATGACAGAAGCCAT+GGG - Chr1:85560540-85560559 MsG0180005005.01.T01:intron 35.0%
AATCAGAAACTGTCTATGCA+AGG + Chr1:85561696-85561715 None:intergenic 35.0%
AATGTGAGCAATATATGCTG+TGG + Chr1:85565324-85565343 None:intergenic 35.0%
ACAAAGATAGATAGCATACC+AGG + Chr1:85559395-85559414 None:intergenic 35.0%
ACATATATACATTGCACTGC+TGG - Chr1:85561977-85561996 MsG0180005005.01.T01:intron 35.0%
AGAGAAGAAGAAGAAGATGA+AGG + Chr1:85559369-85559388 None:intergenic 35.0%
AGATTCGCACACTTTAAATG+TGG - Chr1:85565896-85565915 MsG0180005005.01.T01:five_prime_UTR 35.0%
AGTTTCTGATTTCGTAGTAC+CGG - Chr1:85561705-85561724 MsG0180005005.01.T01:intron 35.0%
ATAGAAAAACAAATCCAGGG+AGG + Chr1:85564724-85564743 None:intergenic 35.0%
ATATCTCATGCTCTTTGAAC+AGG - Chr1:85565492-85565511 MsG0180005005.01.T01:CDS 35.0%
ATATGCTGTGGTACATTGTA+TGG + Chr1:85565312-85565331 None:intergenic 35.0%
ATGATAGAGAATAACGAACC+TGG + Chr1:85559212-85559231 None:intergenic 35.0%
ATTATAGCACACAATAGCAG+TGG - Chr1:85562320-85562339 MsG0180005005.01.T01:intron 35.0%
ATTATATCGTGGATGTTGCA+GGG - Chr1:85561871-85561890 MsG0180005005.01.T01:intron 35.0%
CAAAACAAACTGTTAGACAG+TGG + Chr1:85562807-85562826 None:intergenic 35.0%
CAAAGATAGATAGCATACCA+GGG + Chr1:85559394-85559413 None:intergenic 35.0%
CAAATGTCTGTATCATAGTG+CGG - Chr1:85565868-85565887 MsG0180005005.01.T01:five_prime_UTR 35.0%
CATATTCAATGTACCAGGAA+GGG - Chr1:85565122-85565141 MsG0180005005.01.T01:intron 35.0%
CTCAAATTTGGACTAACTGA+TGG - Chr1:85560952-85560971 MsG0180005005.01.T01:intron 35.0%
CTTTGGTACTTAAAGCTTAC+AGG - Chr1:85563955-85563974 MsG0180005005.01.T01:intron 35.0%
GAGTACAAGTACATTGTTGA+TGG - Chr1:85565151-85565170 MsG0180005005.01.T01:intron 35.0%
GCCGTCGTTAATTATACATT+AGG - Chr1:85562418-85562437 MsG0180005005.01.T01:intron 35.0%
GGTGAACTGAAACTGAAATT+TGG - Chr1:85559119-85559138 MsG0180005005.01.T01:three_prime_UTR 35.0%
GTAATAAAAATCCCTCCCTA+TGG + Chr1:85565378-85565397 None:intergenic 35.0%
TAAATGCCATGCAATATCTC+AGG + Chr1:85563796-85563815 None:intergenic 35.0%
TAATAACATGACAGAAGCCA+TGG - Chr1:85560539-85560558 MsG0180005005.01.T01:intron 35.0%
TAGAAAAACAAATCCAGGGA+GGG + Chr1:85564723-85564742 None:intergenic 35.0%
TATACTGTGACTTCTAATGC+TGG - Chr1:85563563-85563582 MsG0180005005.01.T01:intron 35.0%
TCAGGGTTATAAACTCAATG+AGG - Chr1:85562853-85562872 MsG0180005005.01.T01:intron 35.0%
TCATATTCAATGTACCAGGA+AGG - Chr1:85565121-85565140 MsG0180005005.01.T01:intron 35.0%
TGAAACAAAAAGAAACCTGC+AGG + Chr1:85561128-85561147 None:intergenic 35.0%
TGAAGTTACCTTAAGTAGCA+TGG + Chr1:85559521-85559540 None:intergenic 35.0%
TGATAGAGAATAACGAACCT+GGG + Chr1:85559211-85559230 None:intergenic 35.0%
TGCAACTATCAATGCTACAA+CGG - Chr1:85563067-85563086 MsG0180005005.01.T01:CDS 35.0%
TGTGTGGAATTGTAAAACAG+AGG + Chr1:85559301-85559320 None:intergenic 35.0%
TTATCGGGTTTAGATTGACT+AGG - Chr1:85561562-85561581 MsG0180005005.01.T01:intron 35.0%
TTCAGGACTTGATATTGGAT+GGG - Chr1:85564038-85564057 MsG0180005005.01.T01:intron 35.0%
TTCTACTTCATGTGTTCTCT+GGG - Chr1:85560412-85560431 MsG0180005005.01.T01:intron 35.0%
TTGAATGTCATTGCATGTGT+TGG + Chr1:85561451-85561470 None:intergenic 35.0%
TTGACATGGCCATCTTTATT+GGG + Chr1:85565214-85565233 None:intergenic 35.0%
TTTCAGGACTTGATATTGGA+TGG - Chr1:85564037-85564056 MsG0180005005.01.T01:intron 35.0%
! AGTACATTGTTGATGGAGAA+TGG - Chr1:85565158-85565177 MsG0180005005.01.T01:intron 35.0%
! CAGCTGAGATCATTTAAAAC+AGG + Chr1:85560116-85560135 None:intergenic 35.0%
! GGGTTCTAATTTCTCTTATG+AGG + Chr1:85560362-85560381 None:intergenic 35.0%
! TGATTGACATTTTCTTGTGC+AGG - Chr1:85560440-85560459 MsG0180005005.01.T01:intron 35.0%
! TTCAAAGAGCATGAGATATG+TGG + Chr1:85565491-85565510 None:intergenic 35.0%
!! AACATTGATTTGCAGATGTC+TGG + Chr1:85565948-85565967 None:intergenic 35.0%
!! ACATTGATTTGCAGATGTCT+GGG + Chr1:85565947-85565966 None:intergenic 35.0%
!! TTTTGGAAATGTCCACATGT+AGG - Chr1:85564223-85564242 MsG0180005005.01.T01:intron 35.0%
!!! CAGTTTCTTTTGCTATTGGA+GGG - Chr1:85563395-85563414 MsG0180005005.01.T01:intron 35.0%
!!! GCATATATGTTTTGGGTTCA+GGG - Chr1:85562836-85562855 MsG0180005005.01.T01:intron 35.0%
!!! GGTTACAAAGTTTTCTAGCT+AGG - Chr1:85562742-85562761 MsG0180005005.01.T01:intron 35.0%
AAAGTGACAGGCTTCTTACT+AGG + Chr1:85563982-85564001 None:intergenic 40.0%
AAGAGATTGTCTGCAACATC+TGG + Chr1:85563606-85563625 None:intergenic 40.0%
AAGAGGTTACTTGAACGAAC+AGG + Chr1:85559612-85559631 None:intergenic 40.0%
AAGTGACAGGCTTCTTACTA+GGG + Chr1:85563981-85564000 None:intergenic 40.0%
ACAACACAAGACAGTTACAC+AGG - Chr1:85559098-85559117 MsG0180005005.01.T01:three_prime_UTR 40.0%
AGCAGCAGAGGATACTTTAA+CGG + Chr1:85562367-85562386 None:intergenic 40.0%
AGGCCATGATTCCTATTCAA+AGG + Chr1:85563776-85563795 None:intergenic 40.0%
ATAGAGTTCCACGAGTTAGT+TGG - Chr1:85562670-85562689 MsG0180005005.01.T01:intron 40.0%
ATCTACTAAAGCCTCACCAT+AGG - Chr1:85565359-85565378 MsG0180005005.01.T01:intron 40.0%
ATGGTTCAGAGATCCTCATT+GGG + Chr1:85565631-85565650 None:intergenic 40.0%
ATTAAACATACCAGCACCCA+TGG + Chr1:85560559-85560578 None:intergenic 40.0%
CAGTTCTGTCACATATAGTC+TGG - Chr1:85561168-85561187 MsG0180005005.01.T01:intron 40.0%
CATGATCCAACAATCAAGTC+CGG + Chr1:85561105-85561124 None:intergenic 40.0%
CATTATATCGTGGATGTTGC+AGG - Chr1:85561870-85561889 MsG0180005005.01.T01:intron 40.0%
CCTACGCAATAGATGATTCT+AGG + Chr1:85563683-85563702 None:intergenic 40.0%
CCTAGAATCATCTATTGCGT+AGG - Chr1:85563680-85563699 MsG0180005005.01.T01:intron 40.0%
CCTCCAATAGCAAAAGAAAC+TGG + Chr1:85563397-85563416 None:intergenic 40.0%
CTGTAACAGAGAGCTTAGTA+AGG + Chr1:85565735-85565754 None:intergenic 40.0%
CTTCTACTTCATGTGTTCTC+TGG - Chr1:85560411-85560430 MsG0180005005.01.T01:intron 40.0%
GAAAAACAAAGGCCTACATG+TGG + Chr1:85564238-85564257 None:intergenic 40.0%
GAACTACAACTTCATCCTTC+CGG - Chr1:85561083-85561102 MsG0180005005.01.T01:intron 40.0%
GTAACCTCTCCCAATAAAGA+TGG - Chr1:85565202-85565221 MsG0180005005.01.T01:intron 40.0%
GTAACTGTCTTGTGTTGTGT+GGG + Chr1:85559096-85559115 None:intergenic 40.0%
GTGGAATTGTAAAACAGAGG+AGG + Chr1:85559298-85559317 None:intergenic 40.0%
GTGGAGAATTGGAGAATCAT+GGG - Chr1:85565915-85565934 MsG0180005005.01.T01:five_prime_UTR 40.0%
GTTACCTTAAGTAGCATGGT+TGG + Chr1:85559517-85559536 None:intergenic 40.0%
GTTGACATGGCCATCTTTAT+TGG + Chr1:85565215-85565234 None:intergenic 40.0%
TAACAGACACAAACTCCAGA+TGG + Chr1:85565417-85565436 None:intergenic 40.0%
TAACTGTCTTGTGTTGTGTG+GGG + Chr1:85559095-85559114 None:intergenic 40.0%
TAGAGTTCCACGAGTTAGTT+GGG - Chr1:85562671-85562690 MsG0180005005.01.T01:intron 40.0%
TCAACAAGCAAGTGCATTGA+TGG + Chr1:85565650-85565669 None:intergenic 40.0%
TCAGGACTTGATATTGGATG+GGG - Chr1:85564039-85564058 MsG0180005005.01.T01:intron 40.0%
TCGGATCCTTCAATACACAT+AGG + Chr1:85560089-85560108 None:intergenic 40.0%
TCTACTAAAGCCTCACCATA+GGG - Chr1:85565360-85565379 MsG0180005005.01.T01:intron 40.0%
TCTACTTCATGTGTTCTCTG+GGG - Chr1:85560413-85560432 MsG0180005005.01.T01:intron 40.0%
TGAGGCTAATACACTACTTC+TGG - Chr1:85562871-85562890 MsG0180005005.01.T01:intron 40.0%
TGCATGACATACAATGGCAT+CGG + Chr1:85561842-85561861 None:intergenic 40.0%
TGCTGAGATAAGGTTCGTAA+TGG - Chr1:85561479-85561498 MsG0180005005.01.T01:intron 40.0%
TGTAACTGTCTTGTGTTGTG+TGG + Chr1:85559097-85559116 None:intergenic 40.0%
TGTAATGCTGGACATACACA+GGG - Chr1:85559466-85559485 MsG0180005005.01.T01:CDS 40.0%
TGTGACAGAACTGAATCATC+AGG + Chr1:85561161-85561180 None:intergenic 40.0%
TGTGGAGAATTGGAGAATCA+TGG - Chr1:85565914-85565933 MsG0180005005.01.T01:five_prime_UTR 40.0%
TTCAGAATCTGAATCTTCCC+AGG - Chr1:85559191-85559210 MsG0180005005.01.T01:three_prime_UTR 40.0%
TTCTTCTTCTTCTCTATCCC+TGG - Chr1:85559374-85559393 MsG0180005005.01.T01:exon 40.0%
TTGTAATGCTGGACATACAC+AGG - Chr1:85559465-85559484 MsG0180005005.01.T01:CDS 40.0%
! ATGTTTTCGGTGATCTCTCA+TGG - Chr1:85562173-85562192 MsG0180005005.01.T01:intron 40.0%
! CATTCCAACCATGCTACTTA+AGG - Chr1:85559510-85559529 MsG0180005005.01.T01:intron 40.0%
! CTCACAGCTTATGGGTTTTT+GGG - Chr1:85561649-85561668 MsG0180005005.01.T01:intron 40.0%
! CTTTTTATGGCATCCAGCTT+TGG + Chr1:85563489-85563508 None:intergenic 40.0%
! GGACTGATGCTGAATGTTTT+CGG - Chr1:85562160-85562179 MsG0180005005.01.T01:CDS 40.0%
! GGAGATTTAGAGCTTGTTTC+TGG - Chr1:85562493-85562512 MsG0180005005.01.T01:intron 40.0%
! TCTCACAGCTTATGGGTTTT+TGG - Chr1:85561648-85561667 MsG0180005005.01.T01:intron 40.0%
! TGACTGAAGTTTTACCCATC+CGG + Chr1:85561727-85561746 None:intergenic 40.0%
! TGTGTTGGCATATTCTCGTA+TGG + Chr1:85561436-85561455 None:intergenic 40.0%
!! ATCGGCTGTTGCACTTTTTA+TGG + Chr1:85563502-85563521 None:intergenic 40.0%
!! CATTTTGGTGTATGCTAGAG+AGG - Chr1:85560294-85560313 MsG0180005005.01.T01:intron 40.0%
!! CTTGTTTCTGGATCTTGTGT+TGG - Chr1:85562505-85562524 MsG0180005005.01.T01:intron 40.0%
!! TGGCCAGTTTCTTTTGCTAT+TGG - Chr1:85563391-85563410 MsG0180005005.01.T01:intron 40.0%
!! TTAAGGGCACTCTCTGAAAA+GGG + Chr1:85564433-85564452 None:intergenic 40.0%
!! TTTAAGGGCACTCTCTGAAA+AGG + Chr1:85564434-85564453 None:intergenic 40.0%
!!! CCAGTTTCTTTTGCTATTGG+AGG - Chr1:85563394-85563413 MsG0180005005.01.T01:intron 40.0%
!!! GGCATATATGTTTTGGGTTC+AGG - Chr1:85562835-85562854 MsG0180005005.01.T01:intron 40.0%
!!! GTAGGCCTTTGTTTTTCTGT+TGG - Chr1:85564241-85564260 MsG0180005005.01.T01:intron 40.0%
AAAAATCCCTCCCTATGGTG+AGG + Chr1:85565373-85565392 None:intergenic 45.0%
AACAAATCCAGGGAGGGAAA+AGG + Chr1:85564717-85564736 None:intergenic 45.0%
AACACTTGCGTGCTGAGATA+AGG - Chr1:85561469-85561488 MsG0180005005.01.T01:intron 45.0%
AACTGTTAGACAGTGGCCAA+TGG + Chr1:85562800-85562819 None:intergenic 45.0%
ATACATTGCACTGCTGGACT+TGG - Chr1:85561983-85562002 MsG0180005005.01.T01:intron 45.0%
ATCCAACAATCAAGTCCGGA+AGG + Chr1:85561101-85561120 None:intergenic 45.0%
ATCCTTCCGGACTTGATTGT+TGG - Chr1:85561096-85561115 MsG0180005005.01.T01:intron 45.0%
ATGGCCATCTTTATTGGGAG+AGG + Chr1:85565209-85565228 None:intergenic 45.0%
ATGTCTGTATCATAGTGCGG+TGG - Chr1:85565871-85565890 MsG0180005005.01.T01:five_prime_UTR 45.0%
ATTCCCGCTACACTGAAACA+CGG + Chr1:85562390-85562409 None:intergenic 45.0%
CAGGACTTGATATTGGATGG+GGG - Chr1:85564040-85564059 MsG0180005005.01.T01:intron 45.0%
CGCAGTTTATCAACGTCTTC+AGG + Chr1:85561234-85561253 None:intergenic 45.0%
GAATCAGCACTAAGCAGCAA+TGG + Chr1:85559253-85559272 None:intergenic 45.0%
GATGGTTCAGAGATCCTCAT+TGG + Chr1:85565632-85565651 None:intergenic 45.0%
GGGTTCATGGTTTCTCAAGA+AGG - Chr1:85564469-85564488 MsG0180005005.01.T01:CDS 45.0%
TATCAACGTCTTCAGGAGTC+TGG + Chr1:85561227-85561246 None:intergenic 45.0%
TCATGGCCTGAGATATTGCA+TGG - Chr1:85563787-85563806 MsG0180005005.01.T01:intron 45.0%
TCGATGACAAACAGGGTTCA+TGG - Chr1:85564456-85564475 MsG0180005005.01.T01:CDS 45.0%
TGATGATCCTGATCTCACGA+AGG - Chr1:85565567-85565586 MsG0180005005.01.T01:intron 45.0%
TGCTCTACGGTGGAAATTTC+AGG - Chr1:85564021-85564040 MsG0180005005.01.T01:intron 45.0%
TTTCCACCGTAGAGCAATTG+CGG + Chr1:85564017-85564036 None:intergenic 45.0%
! CTGATTTCGTAGTACCGGAT+GGG - Chr1:85561710-85561729 MsG0180005005.01.T01:intron 45.0%
! TCTGATTTCGTAGTACCGGA+TGG - Chr1:85561709-85561728 MsG0180005005.01.T01:intron 45.0%
!! TGAACAGGTCCTTGATGATG+CGG - Chr1:85565507-85565526 MsG0180005005.01.T01:CDS 45.0%
!! AAAAAAAAATACTAATAAAA+AGG - Chr1:85559024-85559043 MsG0180005005.01.T01:three_prime_UTR 5.0%
!! TTATATATAAATAATATGTT+TGG - Chr1:85559637-85559656 MsG0180005005.01.T01:intron 5.0%
AACTTTGTAACCACGACGCG+TGG + Chr1:85562734-85562753 None:intergenic 50.0%
AAGAGACATACCGCAACAGC+TGG + Chr1:85562016-85562035 None:intergenic 50.0%
AAGGTCATGCTGTCCAAAGC+TGG - Chr1:85563473-85563492 MsG0180005005.01.T01:intron 50.0%
AATCCGACCCAACTAACTCG+TGG + Chr1:85562681-85562700 None:intergenic 50.0%
ACACAATAGCAGTGGAGAGG+AGG - Chr1:85562328-85562347 MsG0180005005.01.T01:intron 50.0%
ACTAAAGCCTCACCATAGGG+AGG - Chr1:85565363-85565382 MsG0180005005.01.T01:intron 50.0%
ACTTGATATTGGATGGGGGC+AGG - Chr1:85564044-85564063 MsG0180005005.01.T01:intron 50.0%
AGCACACAATAGCAGTGGAG+AGG - Chr1:85562325-85562344 MsG0180005005.01.T01:intron 50.0%
AGCTGTTGCGGTATGTCTCT+TGG - Chr1:85562015-85562034 MsG0180005005.01.T01:intron 50.0%
CACAATAGCAGTGGAGAGGA+GGG - Chr1:85562329-85562348 MsG0180005005.01.T01:intron 50.0%
CGGTGATCTCTCATGGTGAA+TGG - Chr1:85562180-85562199 MsG0180005005.01.T01:intron 50.0%
CGTTCATCCTTCGTGAGATC+AGG + Chr1:85565577-85565596 None:intergenic 50.0%
CTAAAGCCTCACCATAGGGA+GGG - Chr1:85565364-85565383 MsG0180005005.01.T01:intron 50.0%
GAGCTACTTGTCTCTGCACT+CGG + Chr1:85560483-85560502 None:intergenic 50.0%
GATTGTTGGATCATGCCTGC+AGG - Chr1:85561110-85561129 MsG0180005005.01.T01:intron 50.0%
GTTCCACGAGTTAGTTGGGT+CGG - Chr1:85562675-85562694 MsG0180005005.01.T01:intron 50.0%
TCTGGAAGCTCTTCCCAATG+AGG - Chr1:85565615-85565634 MsG0180005005.01.T01:intron 50.0%
TGATCTACGAAAGCGGCTTC+CGG - Chr1:85561907-85561926 MsG0180005005.01.T01:intron 50.0%
TGCTCCGTGTTTCAGTGTAG+CGG - Chr1:85562383-85562402 MsG0180005005.01.T01:intron 50.0%
TTTCTTGTGCAGGCTGCTTC+TGG - Chr1:85560450-85560469 MsG0180005005.01.T01:intron 50.0%
! AAGATATTGTGGTGGCGAGC+AGG + Chr1:85559342-85559361 None:intergenic 50.0%
!! AAGCCTGTCACTTTGTCGTG+GGG - Chr1:85563988-85564007 MsG0180005005.01.T01:intron 50.0%
!! AAGTAGCTCTGATGTCGAGG+AGG - Chr1:85560494-85560513 MsG0180005005.01.T01:intron 50.0%
!! AGAAGCCTGTCACTTTGTCG+TGG - Chr1:85563986-85564005 MsG0180005005.01.T01:intron 50.0%
!! GAAGCCTGTCACTTTGTCGT+GGG - Chr1:85563987-85564006 MsG0180005005.01.T01:intron 50.0%
!! GACAAGTAGCTCTGATGTCG+AGG - Chr1:85560491-85560510 MsG0180005005.01.T01:intron 50.0%
ACACCGCAATTGCTCTACGG+TGG - Chr1:85564011-85564030 MsG0180005005.01.T01:intron 55.0%
ACCAGTCACTCTCTCCCGAA+GGG + Chr1:85565548-85565567 None:intergenic 55.0%
ACTGAAACACGGAGCAGCAG+AGG + Chr1:85562379-85562398 None:intergenic 55.0%
ATGACAGAAGCCATGGGTGC+TGG - Chr1:85560546-85560565 MsG0180005005.01.T01:intron 55.0%
CAACGTCTTCAGGAGTCTGG+TGG + Chr1:85561224-85561243 None:intergenic 55.0%
GAGGAGGAGCAGATAGTGTG+TGG + Chr1:85559317-85559336 None:intergenic 55.0%
GCTCCGTGTTTCAGTGTAGC+GGG - Chr1:85562384-85562403 MsG0180005005.01.T01:intron 55.0%
GGGACACCGCAATTGCTCTA+CGG - Chr1:85564008-85564027 MsG0180005005.01.T01:intron 55.0%
TCTTGTGTTGTGTGGGGCAG+CGG + Chr1:85559089-85559108 None:intergenic 55.0%
TGGAAGAGCTCCAGCTGTTG+CGG - Chr1:85562003-85562022 MsG0180005005.01.T01:intron 55.0%
TGTCCCCACGACAAAGTGAC+AGG + Chr1:85563994-85564013 None:intergenic 55.0%
! TTCGCTTCCTTTTCCCTCCC+TGG - Chr1:85564707-85564726 MsG0180005005.01.T01:intron 55.0%
!! GTCCTTGATGATGCGGACAG+TGG - Chr1:85565514-85565533 MsG0180005005.01.T01:CDS 55.0%
!! TAGCTCTGATGTCGAGGAGG+AGG - Chr1:85560497-85560516 MsG0180005005.01.T01:intron 55.0%
AGTCACTCTCTCCCGAAGGG+AGG + Chr1:85565545-85565564 None:intergenic 60.0%
CACCAGTCACTCTCTCCCGA+AGG + Chr1:85565549-85565568 None:intergenic 60.0%
GGCCACTGTCCGCATCATCA+AGG + Chr1:85565519-85565538 None:intergenic 60.0%
TCCCTTCGGGAGAGAGTGAC+TGG - Chr1:85565544-85565563 MsG0180005005.01.T01:intron 60.0%
TGTACTCGTAGCGCCCTTCC+TGG + Chr1:85565138-85565157 None:intergenic 60.0%
! TTGTGGTGGCGAGCAGGAAG+AGG + Chr1:85559336-85559355 None:intergenic 60.0%
ACAGTGGCCGTGCCTCCCTT+CGG - Chr1:85565530-85565549 MsG0180005005.01.T01:intron 65.0%
CAGTGGAGAGGAGGGAGCTG+AGG - Chr1:85562337-85562356 MsG0180005005.01.T01:intron 65.0%
CTCTCTCCCGAAGGGAGGCA+CGG + Chr1:85565540-85565559 None:intergenic 65.0%
GGAGAGGAGGGAGCTGAGGA+TGG - Chr1:85562341-85562360 MsG0180005005.01.T01:intron 65.0%
TGTGTGGGGCAGCGGTCACA+AGG + Chr1:85559081-85559100 None:intergenic 65.0%
! TGGTGGCGAGCAGGAAGAGG+AGG + Chr1:85559333-85559352 None:intergenic 65.0%
CAGTGGCCGTGCCTCCCTTC+GGG - Chr1:85565531-85565550 MsG0180005005.01.T01:intron 70.0%
CGCACGCATACCACGCGTCG+TGG - Chr1:85562721-85562740 MsG0180005005.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 85559023 85566000 85559023 ID=MsG0180005005.01;Name=MsG0180005005.01
Chr1 mRNA 85559023 85566000 85559023 ID=MsG0180005005.01.T01;Parent=MsG0180005005.01;Name=MsG0180005005.01.T01;_AED=0.48;_eAED=0.48;_QI=158|0.77|0.9|1|0.55|0.6|10|355|308
Chr1 exon 85559023 85559509 85559023 ID=MsG0180005005.01.T01:exon:28276;Parent=MsG0180005005.01.T01
Chr1 exon 85559777 85559884 85559777 ID=MsG0180005005.01.T01:exon:28275;Parent=MsG0180005005.01.T01
Chr1 exon 85560958 85561053 85560958 ID=MsG0180005005.01.T01:exon:28274;Parent=MsG0180005005.01.T01
Chr1 exon 85561499 85561555 85561499 ID=MsG0180005005.01.T01:exon:28273;Parent=MsG0180005005.01.T01
Chr1 exon 85562131 85562190 85562131 ID=MsG0180005005.01.T01:exon:28272;Parent=MsG0180005005.01.T01
Chr1 exon 85562999 85563131 85562999 ID=MsG0180005005.01.T01:exon:28271;Parent=MsG0180005005.01.T01
Chr1 exon 85564401 85564561 85564401 ID=MsG0180005005.01.T01:exon:28270;Parent=MsG0180005005.01.T01
Chr1 exon 85565492 85565536 85565492 ID=MsG0180005005.01.T01:exon:28269;Parent=MsG0180005005.01.T01
Chr1 exon 85565628 85565730 85565628 ID=MsG0180005005.01.T01:exon:28268;Parent=MsG0180005005.01.T01
Chr1 exon 85565811 85566000 85565811 ID=MsG0180005005.01.T01:exon:28267;Parent=MsG0180005005.01.T01
Chr1 five_prime_UTR 85565843 85566000 85565843 ID=MsG0180005005.01.T01:five_prime_utr;Parent=MsG0180005005.01.T01
Chr1 CDS 85565811 85565842 85565811 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85565628 85565730 85565628 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85565492 85565536 85565492 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85564401 85564561 85564401 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85562999 85563131 85562999 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85562131 85562190 85562131 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85561499 85561555 85561499 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85560958 85561053 85560958 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85559777 85559884 85559777 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 CDS 85559378 85559509 85559378 ID=MsG0180005005.01.T01:cds;Parent=MsG0180005005.01.T01
Chr1 three_prime_UTR 85559023 85559377 85559023 ID=MsG0180005005.01.T01:three_prime_utr;Parent=MsG0180005005.01.T01
Gene Sequence

>MsG0180005005.01.T01

ATGAACTGTCTTCAGAATCTGAATCTTCCCAGATCCTCCTCTGTTTTACAATTCCACACACTATCTGCTCCTCCTCTTCCTGCTCGCCACCACAATATCTTTCTTCCTTCATCTTCTTCTTCTTCTCTATCCCTGGGAATCATCACTAAATCTCATCACATTCCAACCATGCTACTTAAGGCTGCTTCTGGTTCTATACCGAGTGCAGAGACAAGTAGCTCTGATGTCGAGGAGGAGGTTAAGTCTGAGATATACAGTAATAACATGACAGAAGCCATGGGTGCTGGTATGTTTAATCATGTTGTGCTTCTCATTTACAAACAACCAAGCTTTATTTTAATGGACTTCGATTCATTTGATCTACGAAAGCGGCTTCCGGCTGTAATTAGCAAATTATATAAGGCAATTAATTCTAATGGAGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCATATATGTTTTGGGTTCAGGGTTATAAACTCAATGAGGCTAATACACTACTTCTGAGCAAAAGGTCATGCTGTCCAAAGCTGGATGCCATAAAAAGTGCAACAGCCGATATTCTTACAGGCCCTAGTAAGAAGCCTGTCACTTTGTCGTGGGGACACCGCAATTGCTCTACGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGGAAGGGCGCTACGAGTACAAGTACATTGTTGATGGAGAATGGACGTGTAATAACGATGAGCTTGTAACCTCTCCCAATAAAGATGGCCATGTCAACAATTTTATCGAAGTCCTTGATGATGCGGACAGTGGCCGTGCCTCCCTTCGGGAGAGAGTGACTGGTGATGATCCTGATCTCACGAAGGATGAACGAAACAGAATAATAGAGTTTCTGGAAGCTCTTCCCAATGAGGATCTCTGA
Protein sequence

>MsG0180005005.01.T01

MNCLQNLNLPRSSSVLQFHTLSAPPLPARHHNIFLPSSSSSSLSLGIITKSHHIPTMLLKAASGSIPSAETSSSDVEEEVKSEIYSNNMTEAMGAGMFNHVVLLIYKQPSFILMDFDSFDLRKRLPAVISKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLNEANTLLLSKRSCCPKLDAIKSATADILTGPSKKPVTLSWGHRNCSTVEISGLDIGWGQEGRYEYKYIVDGEWTCNNDELVTSPNKDGHVNNFIEVLDDADSGRASLRERVTGDDPDLTKDERNRIIEFLEALPNEDL*