AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009699.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009699.01.T01 MTR_2g069470 66.031 262 40 4 1 226 1 249 1.00e-109 315
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009699.01.T01 AT3G12930 57.895 171 59 2 44 214 81 238 4.84e-62 194

Find 69 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGAGCTTTCTATAATT+TGG 0.135819 2:+56806179 MsG0280009699.01.T01:CDS
GAAACTGGTGAAAACCTTTC+TGG 0.157336 2:-56803781 None:intergenic
TTGTGAAGCCACTTGTTTAC+TGG 0.250083 2:+56805474 MsG0280009699.01.T01:CDS
TCTCTGCACTTGCAGGCTTT+TGG 0.287492 2:-56805166 None:intergenic
GATGAATTATTAAATAACTA+TGG 0.298468 2:+56805119 MsG0280009699.01.T01:CDS
TCGTCAATCTCTGCACTTGC+AGG 0.326105 2:-56805173 None:intergenic
GGTCACCTTCTCCGGCGAAA+TGG 0.354058 2:+56803729 MsG0280009699.01.T01:CDS
GTCACCTTCTCCGGCGAAAT+GGG 0.375268 2:+56803730 MsG0280009699.01.T01:CDS
GGTTTGAAGAAGAGTTGGTT+TGG 0.390839 2:-56803759 None:intergenic
TTGTTATCAGCTTACATGAT+AGG 0.394608 2:-56805208 None:intergenic
GACCGGGCTGAAAAGAAATA+TGG 0.400591 2:+56805673 MsG0280009699.01.T01:CDS
AAACTGGTGAAAACCTTTCT+GGG 0.402876 2:-56803780 None:intergenic
CCATACCCGATAGCATCAAT+TGG 0.405326 2:-56805535 None:intergenic
ATGACTTACCGAAGTCCAAC+AGG 0.413851 2:-56805735 None:intergenic
GTTTGAAGAAGAGTTGGTTT+GGG 0.414736 2:-56803758 None:intergenic
GCATCTAGTTGCTGTGGAAC+TGG 0.415804 2:+56805406 MsG0280009699.01.T01:intron
ATCGCTCCGGTCACCTTCTC+CGG 0.425960 2:+56803721 MsG0280009699.01.T01:CDS
CACGGTTGCAAGTGAGGTTA+AGG 0.426301 2:+56805430 MsG0280009699.01.T01:CDS
TCGTCCCCAATTGATGCTAT+CGG 0.438260 2:+56805529 MsG0280009699.01.T01:CDS
TCCAACAGGGTCCATGAGTT+GGG 0.438380 2:-56805721 None:intergenic
CGATGGCTCCGGCGAGGGAT+AGG 0.447540 2:-56803702 None:intergenic
AATTATAGAAAGCTCTTTGT+GGG 0.448717 2:-56806176 None:intergenic
CATACCCGATAGCATCAATT+GGG 0.454512 2:-56805534 None:intergenic
TATGATTGTTTCTTGATCAC+AGG 0.469630 2:+56806126 MsG0280009699.01.T01:CDS
ACTCTTCTTCAAACCCAGAA+AGG 0.478694 2:+56803767 MsG0280009699.01.T01:CDS
GTCCAACAGGGTCCATGAGT+TGG 0.493640 2:-56805722 None:intergenic
TTCTGGGTTTGAAGAAGAGT+TGG 0.498595 2:-56803764 None:intergenic
CGTCCCCAATTGATGCTATC+GGG 0.505139 2:+56805530 MsG0280009699.01.T01:CDS
GGTTAAGGCAGGGGATATAA+AGG 0.507409 2:+56805445 MsG0280009699.01.T01:CDS
AAATATGGTAAAATTCCAAA+TGG 0.510572 2:+56805688 MsG0280009699.01.T01:CDS
TAGGCTCCCTCATTGCGAAA+TGG 0.511514 2:-56806255 None:intergenic
AAATTATAGAAAGCTCTTTG+TGG 0.514327 2:-56806177 None:intergenic
ATGACCCATTTCGCCGGAGA+AGG 0.518592 2:-56803734 None:intergenic
ATGAATTATTAAATAACTAT+GGG 0.519880 2:+56805120 MsG0280009699.01.T01:CDS
TCCACTCTCCTATCCCTCGC+CGG 0.530113 2:+56803694 MsG0280009699.01.T01:CDS
CGGAGCGATGGCTCCGGCGA+GGG 0.533421 2:-56803707 None:intergenic
TTCTGAATACAGTCTGATCC+AGG 0.535291 2:+56806096 MsG0280009699.01.T01:intron
TTAGGTCGAGAATTAGAGAC+CGG 0.535827 2:+56805656 MsG0280009699.01.T01:intron
ATTTCGCCGGAGAAGGTGAC+CGG 0.541431 2:-56803727 None:intergenic
GGTGACCGGAGCGATGGCTC+CGG 0.541587 2:-56803713 None:intergenic
GTTGCAAGTGAGGTTAAGGC+AGG 0.541952 2:+56805434 MsG0280009699.01.T01:CDS
ACCCAACTCATGGACCCTGT+TGG 0.542471 2:+56805720 MsG0280009699.01.T01:CDS
TTTCGCAATGAGGGAGCCTA+CGG 0.547079 2:+56806258 MsG0280009699.01.T01:CDS
AGTTGCTGTGGAACTGGCCA+CGG 0.547501 2:+56805412 MsG0280009699.01.T01:intron
GAGACTCAAAACCCAACTCA+TGG 0.554759 2:+56805710 MsG0280009699.01.T01:CDS
TGCAAGTGAGGTTAAGGCAG+GGG 0.558585 2:+56805436 MsG0280009699.01.T01:CDS
CAACCACCATTTCGCAATGA+GGG 0.563409 2:+56806249 MsG0280009699.01.T01:CDS
ACTGGCCACGGTTGCAAGTG+AGG 0.566137 2:+56805424 MsG0280009699.01.T01:CDS
TCATGGACCCTGTTGGACTT+CGG 0.575861 2:+56805727 MsG0280009699.01.T01:CDS
TTGGGGATGACCCATTTCGC+CGG 0.581448 2:-56803740 None:intergenic
GGAGAAGGTGACCGGAGCGA+TGG 0.584683 2:-56803719 None:intergenic
CTTAACCTCACTTGCAACCG+TGG 0.590346 2:-56805429 None:intergenic
AATCGAGTCCAGTAAACAAG+TGG 0.595838 2:-56805482 None:intergenic
CCGGAGCGATGGCTCCGGCG+AGG 0.597203 2:-56803708 None:intergenic
GCTCCCTCATTGCGAAATGG+TGG 0.600231 2:-56806252 None:intergenic
CCTCGCCGGAGCCATCGCTC+CGG 0.600870 2:+56803708 MsG0280009699.01.T01:CDS
TCAACCACCATTTCGCAATG+AGG 0.606311 2:+56806248 MsG0280009699.01.T01:CDS
AAACAATCATAAGATGAACC+TGG 0.610750 2:-56806114 None:intergenic
TTATAGAAAGCTCTTTGTGG+GGG 0.611682 2:-56806174 None:intergenic
TTGCAAGTGAGGTTAAGGCA+GGG 0.616058 2:+56805435 MsG0280009699.01.T01:CDS
TGTTGTGCATCTAGTTGCTG+TGG 0.619390 2:+56805400 MsG0280009699.01.T01:intron
ATTATAGAAAGCTCTTTGTG+GGG 0.619735 2:-56806175 None:intergenic
TTTGAAGAAGAGTTGGTTTG+GGG 0.620657 2:-56803757 None:intergenic
AGGGATAGGAGAGTGGAAGA+CGG 0.644410 2:-56803688 None:intergenic
TCCGGCGAGGGATAGGAGAG+TGG 0.665115 2:-56803695 None:intergenic
TAGGTCGAGAATTAGAGACC+GGG 0.675536 2:+56805657 MsG0280009699.01.T01:intron
TGCATCATCTGAGAAACCGT+AGG 0.677693 2:-56806274 None:intergenic
ATACCCGATAGCATCAATTG+GGG 0.698958 2:-56805533 None:intergenic
TGACTTACCGAAGTCCAACA+GGG 0.707635 2:-56805734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATTATTAAATAACTAT+GGG + Chr2:56805120-56805139 MsG0280009699.01.T01:CDS 10.0%
!! TTTAATGTTTATACATTATT+TGG + Chr2:56804412-56804431 MsG0280009699.01.T01:intron 10.0%
!!! AATTATTTAAGTTTTATTAC+CGG + Chr2:56804168-56804187 MsG0280009699.01.T01:intron 10.0%
!! AAAATATGAATACATAACAA+TGG - Chr2:56804301-56804320 None:intergenic 15.0%
!! ATGAATTTATATAATCACAA+TGG + Chr2:56804959-56804978 MsG0280009699.01.T01:intron 15.0%
!! GATGAATTATTAAATAACTA+TGG + Chr2:56805119-56805138 MsG0280009699.01.T01:CDS 15.0%
!! TAAATAATTGAATGTAAACA+AGG - Chr2:56804157-56804176 None:intergenic 15.0%
!! AAATATGGTAAAATTCCAAA+TGG + Chr2:56805688-56805707 MsG0280009699.01.T01:CDS 20.0%
!! AATATATAAAGATCAATGAC+AGG - Chr2:56805563-56805582 None:intergenic 20.0%
!! TAAGAATCAACATTAAACAA+AGG - Chr2:56804850-56804869 None:intergenic 20.0%
!! TGTAAAAAGAAATGTAAACA+AGG - Chr2:56805258-56805277 None:intergenic 20.0%
!!! TAACAAACTGTATAATTTTC+AGG + Chr2:56805067-56805086 MsG0280009699.01.T01:intron 20.0%
!!! TATAATTTGGAAGAGTTTTA+TGG + Chr2:56806192-56806211 MsG0280009699.01.T01:CDS 20.0%
!!! TTTATGTTGATTGATTTAGA+AGG - Chr2:56805965-56805984 None:intergenic 20.0%
!!! TTTTTTTTTTCTTTGCTCAA+AGG + Chr2:56805599-56805618 MsG0280009699.01.T01:intron 20.0%
! AAATAGCGTAACTACTTTAA+AGG - Chr2:56804564-56804583 None:intergenic 25.0%
! AAATTATAGAAAGCTCTTTG+TGG - Chr2:56806180-56806199 None:intergenic 25.0%
! AATAGCGTAACTACTTTAAA+GGG - Chr2:56804563-56804582 None:intergenic 25.0%
! AATTATAGAAAGCTCTTTGT+GGG - Chr2:56806179-56806198 None:intergenic 25.0%
! ACAAAGAGCTTTCTATAATT+TGG + Chr2:56806179-56806198 MsG0280009699.01.T01:CDS 25.0%
! AGATAAGAGTTTATAAAGAG+AGG + Chr2:56804627-56804646 MsG0280009699.01.T01:intron 25.0%
! ATAAAATGCAGACAATTAGA+GGG - Chr2:56805778-56805797 None:intergenic 25.0%
! CTTCTGATTATGTCAAATAT+AGG - Chr2:56806013-56806032 None:intergenic 25.0%
! GACTAAAACAAATACGTAAT+AGG - Chr2:56804917-56804936 None:intergenic 25.0%
! GATTCAGAATAAGATGTTTA+AGG + Chr2:56804358-56804377 MsG0280009699.01.T01:intron 25.0%
! GTAAAATGTTAACTGAGATA+AGG + Chr2:56804464-56804483 MsG0280009699.01.T01:intron 25.0%
! TACAAGAAAAACAACTACAT+AGG - Chr2:56804272-56804291 None:intergenic 25.0%
! TATAAAATGCAGACAATTAG+AGG - Chr2:56805779-56805798 None:intergenic 25.0%
! TATTGCAACATAAATTGCAT+CGG + Chr2:56806035-56806054 MsG0280009699.01.T01:intron 25.0%
!! AATGAGTTCAGTTTAGATTT+TGG + Chr2:56803964-56803983 MsG0280009699.01.T01:intron 25.0%
!! ATACTTTTGAACTTTGCTTT+CGG + Chr2:56803860-56803879 MsG0280009699.01.T01:intron 25.0%
!! ATGAGTTCAGTTTAGATTTT+GGG + Chr2:56803965-56803984 MsG0280009699.01.T01:intron 25.0%
!! TTATGTCAAATATAGGCTTT+TGG - Chr2:56806006-56806025 None:intergenic 25.0%
!!! AGTTTTGGTAGTTAAAATTC+AGG - Chr2:56804877-56804896 None:intergenic 25.0%
!!! TGATTTAGAAGGTTTTGATA+GGG - Chr2:56805954-56805973 None:intergenic 25.0%
!!! TTGATTTAGAAGGTTTTGAT+AGG - Chr2:56805955-56805974 None:intergenic 25.0%
AAACAATCATAAGATGAACC+TGG - Chr2:56806117-56806136 None:intergenic 30.0%
AAATAACCGAACCATAGTAA+AGG - Chr2:56804506-56804525 None:intergenic 30.0%
AATGTTAACTGAGATAAGGT+TGG + Chr2:56804468-56804487 MsG0280009699.01.T01:intron 30.0%
ACATGTATGTGTCTTATATC+AGG + Chr2:56805290-56805309 MsG0280009699.01.T01:intron 30.0%
ATGCAATTTAGAAAACCTTG+AGG + Chr2:56804043-56804062 MsG0280009699.01.T01:intron 30.0%
ATTATAGAAAGCTCTTTGTG+GGG - Chr2:56806178-56806197 None:intergenic 30.0%
CAACTACTCTATAAGATTGA+AGG + Chr2:56804069-56804088 MsG0280009699.01.T01:intron 30.0%
TAACACCTAAACATAAACAC+CGG - Chr2:56804190-56804209 None:intergenic 30.0%
TACCAAACAAGATACAAGAT+AGG - Chr2:56806069-56806088 None:intergenic 30.0%
TATTACCGGTGTTTATGTTT+AGG + Chr2:56804182-56804201 MsG0280009699.01.T01:intron 30.0%
TGATTGGCAATTCTCATTAA+GGG + Chr2:56805036-56805055 MsG0280009699.01.T01:intron 30.0%
TTAACTACCAAAACTGAGAA+TGG + Chr2:56804882-56804901 MsG0280009699.01.T01:intron 30.0%
TTAATGAGAATTGCCAATCA+CGG - Chr2:56805036-56805055 None:intergenic 30.0%
TTAGGTGTTAATGTTGTGTT+CGG + Chr2:56804200-56804219 MsG0280009699.01.T01:intron 30.0%
TTGTTATCAGCTTACATGAT+AGG - Chr2:56805211-56805230 None:intergenic 30.0%
! ATAGTCCTATCTTTTAAACG+TGG - Chr2:56804607-56804626 None:intergenic 30.0%
! TACTTTAAAGGGCTCAAATT+GGG - Chr2:56804552-56804571 None:intergenic 30.0%
! TAGTCCTATCTTTTAAACGT+GGG - Chr2:56804606-56804625 None:intergenic 30.0%
! TATGATTGTTTCTTGATCAC+AGG + Chr2:56806126-56806145 MsG0280009699.01.T01:CDS 30.0%
! TATTTGGATGTTGACTATAG+AGG + Chr2:56804428-56804447 MsG0280009699.01.T01:intron 30.0%
!! AATGGTGGTTGATTTTCAAA+AGG - Chr2:56806240-56806259 None:intergenic 30.0%
!! CTGTATAATTTTCAGGATGT+AGG + Chr2:56805074-56805093 MsG0280009699.01.T01:intron 30.0%
!! GTTTTATGGTAATGCAACAT+CGG + Chr2:56806206-56806225 MsG0280009699.01.T01:CDS 30.0%
!!! AGTTTAGATTTTGGGTTCTA+TGG + Chr2:56803973-56803992 MsG0280009699.01.T01:intron 30.0%
!!! GGGTTTGGTTTTTAAAACAT+TGG + Chr2:56804738-56804757 MsG0280009699.01.T01:intron 30.0%
!!! TTACTATGGTTCGGTTATTT+TGG + Chr2:56804506-56804525 MsG0280009699.01.T01:intron 30.0%
AAACTGGTGAAAACCTTTCT+GGG - Chr2:56803783-56803802 None:intergenic 35.0%
AAGAGGTTAGAATCATGTTG+AGG - Chr2:56805928-56805947 None:intergenic 35.0%
AAGTCCCACGTTTAAAAGAT+AGG + Chr2:56804599-56804618 MsG0280009699.01.T01:intron 35.0%
ACAATTGCTAGACACTAAAG+AGG - Chr2:56804802-56804821 None:intergenic 35.0%
AGCCAATGACAATTCTTTCT+CGG + Chr2:56803889-56803908 MsG0280009699.01.T01:intron 35.0%
ATAATCAGAAGCAAAGATGC+AGG + Chr2:56805899-56805918 MsG0280009699.01.T01:intron 35.0%
GCATCTTGAATTTGAAGAGA+AGG + Chr2:56803834-56803853 MsG0280009699.01.T01:intron 35.0%
GTCCTATCTTGTATCTTGTT+TGG + Chr2:56806064-56806083 MsG0280009699.01.T01:intron 35.0%
GTGATTGGCAATTCTCATTA+AGG + Chr2:56805035-56805054 MsG0280009699.01.T01:intron 35.0%
TACCGAGAAAGAATTGTCAT+TGG - Chr2:56803894-56803913 None:intergenic 35.0%
TCAGACTGTATTCAGAATCA+CGG - Chr2:56806093-56806112 None:intergenic 35.0%
TCTAGAAGTTATGTCTTTGC+TGG - Chr2:56805851-56805870 None:intergenic 35.0%
TCTTCAAATTCAAGATGCTG+TGG - Chr2:56803832-56803851 None:intergenic 35.0%
TTATAGAAAGCTCTTTGTGG+GGG - Chr2:56806177-56806196 None:intergenic 35.0%
TTTGTGGGGGAAGAAATAAA+TGG - Chr2:56806164-56806183 None:intergenic 35.0%
! ATCTTTTAAACGTGGGACTT+GGG - Chr2:56804599-56804618 None:intergenic 35.0%
! CTACTTTAAAGGGCTCAAAT+TGG - Chr2:56804553-56804572 None:intergenic 35.0%
! CTAGATTCCATTCTCAGTTT+TGG - Chr2:56804892-56804911 None:intergenic 35.0%
! GTTTGAAGAAGAGTTGGTTT+GGG - Chr2:56803761-56803780 None:intergenic 35.0%
! TACCATATTTCTTTTCAGCC+CGG - Chr2:56805678-56805697 None:intergenic 35.0%
! TATCTTTTAAACGTGGGACT+TGG - Chr2:56804600-56804619 None:intergenic 35.0%
!! TTTGAAGAAGAGTTGGTTTG+GGG - Chr2:56803760-56803779 None:intergenic 35.0%
!!! CAAATATAGGCTTTTGGAAC+TGG - Chr2:56806000-56806019 None:intergenic 35.0%
!!! TATTTTGGCAGTTTGATCAG+TGG + Chr2:56804521-56804540 MsG0280009699.01.T01:intron 35.0%
AAGGGGAAAAAGTTGTGGTT+TGG - Chr2:56804774-56804793 None:intergenic 40.0%
AATCGAGTCCAGTAAACAAG+TGG - Chr2:56805485-56805504 None:intergenic 40.0%
ACACTAAAGAGGAGATGAAG+GGG - Chr2:56804791-56804810 None:intergenic 40.0%
ACTCTTCTTCAAACCCAGAA+AGG + Chr2:56803767-56803786 MsG0280009699.01.T01:CDS 40.0%
AGACACTAAAGAGGAGATGA+AGG - Chr2:56804793-56804812 None:intergenic 40.0%
AGATGAAGGGGAAAAAGTTG+TGG - Chr2:56804779-56804798 None:intergenic 40.0%
AGGGGAAAAAGTTGTGGTTT+GGG - Chr2:56804773-56804792 None:intergenic 40.0%
AGTGCAATGGGAAACTTCAA+TGG - Chr2:56805809-56805828 None:intergenic 40.0%
ATACCCGATAGCATCAATTG+GGG - Chr2:56805536-56805555 None:intergenic 40.0%
ATAGAGTAGTTGTCTCCTCA+AGG - Chr2:56804061-56804080 None:intergenic 40.0%
CATACCCGATAGCATCAATT+GGG - Chr2:56805537-56805556 None:intergenic 40.0%
CCTTACAAAACCAGCTTGTA+AGG - Chr2:56804662-56804681 None:intergenic 40.0%
GAAACTGGTGAAAACCTTTC+TGG - Chr2:56803784-56803803 None:intergenic 40.0%
GACACTAAAGAGGAGATGAA+GGG - Chr2:56804792-56804811 None:intergenic 40.0%
TGGAGCGTAACGTTGAAATT+GGG - Chr2:56804696-56804715 None:intergenic 40.0%
TTAGGTCGAGAATTAGAGAC+CGG + Chr2:56805656-56805675 MsG0280009699.01.T01:intron 40.0%
TTCTGAATACAGTCTGATCC+AGG + Chr2:56806096-56806115 MsG0280009699.01.T01:intron 40.0%
TTCTGGGTTTGAAGAAGAGT+TGG - Chr2:56803767-56803786 None:intergenic 40.0%
TTGTGAAGCCACTTGTTTAC+TGG + Chr2:56805474-56805493 MsG0280009699.01.T01:CDS 40.0%
! GAAGTGACTTTTGCAGAAAC+TGG - Chr2:56803799-56803818 None:intergenic 40.0%
! GGTTTGAAGAAGAGTTGGTT+TGG - Chr2:56803762-56803781 None:intergenic 40.0%
!! AGGTTTTGATAGGGACAAAG+AGG - Chr2:56805945-56805964 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG + Chr2:56804659-56804678 MsG0280009699.01.T01:intron 40.0%
!!! TTGGGTTTTGAGTCTCCATT+TGG - Chr2:56805706-56805725 None:intergenic 40.0%
AAGATGCTGTGGCGATGTAA+AGG - Chr2:56803821-56803840 None:intergenic 45.0%
ACCATAGTAAAGGCCACGAT+CGG - Chr2:56804496-56804515 None:intergenic 45.0%
AGTGCTTCATAGTTCACAGG+AGG + Chr2:56804237-56804256 MsG0280009699.01.T01:intron 45.0%
ATCTCTCACTGGTGTGTTGT+CGG + Chr2:56804717-56804736 MsG0280009699.01.T01:intron 45.0%
ATGACTTACCGAAGTCCAAC+AGG - Chr2:56805738-56805757 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+TGG - Chr2:56804657-56804676 None:intergenic 45.0%
CAACCACCATTTCGCAATGA+GGG + Chr2:56806249-56806268 MsG0280009699.01.T01:CDS 45.0%
CCAATTGATGCTATCGGGTA+TGG + Chr2:56805535-56805554 MsG0280009699.01.T01:intron 45.0%
CCATACCCGATAGCATCAAT+TGG - Chr2:56805538-56805557 None:intergenic 45.0%
CTGGAGCGTAACGTTGAAAT+TGG - Chr2:56804697-56804716 None:intergenic 45.0%
GACCGGGCTGAAAAGAAATA+TGG + Chr2:56805673-56805692 MsG0280009699.01.T01:CDS 45.0%
GAGACTCAAAACCCAACTCA+TGG + Chr2:56805710-56805729 MsG0280009699.01.T01:CDS 45.0%
GCTAGTGCTTCATAGTTCAC+AGG + Chr2:56804234-56804253 MsG0280009699.01.T01:intron 45.0%
GGTTAAGGCAGGGGATATAA+AGG + Chr2:56805445-56805464 MsG0280009699.01.T01:CDS 45.0%
TAGGTCGAGAATTAGAGACC+GGG + Chr2:56805657-56805676 MsG0280009699.01.T01:intron 45.0%
TCAACCACCATTTCGCAATG+AGG + Chr2:56806248-56806267 MsG0280009699.01.T01:CDS 45.0%
TCGTCCCCAATTGATGCTAT+CGG + Chr2:56805529-56805548 MsG0280009699.01.T01:CDS 45.0%
TCGTGGCCTTTACTATGGTT+CGG + Chr2:56804497-56804516 MsG0280009699.01.T01:intron 45.0%
TGACTTACCGAAGTCCAACA+GGG - Chr2:56805737-56805756 None:intergenic 45.0%
TGCATCATCTGAGAAACCGT+AGG - Chr2:56806277-56806296 None:intergenic 45.0%
TGTTGTGCATCTAGTTGCTG+TGG + Chr2:56805400-56805419 MsG0280009699.01.T01:intron 45.0%
TTGCAAGTGAGGTTAAGGCA+GGG + Chr2:56805435-56805454 MsG0280009699.01.T01:CDS 45.0%
! GCCTCTTCTAGAAGTGCAAT+GGG - Chr2:56805821-56805840 None:intergenic 45.0%
! TCCCATTGCACTTCTAGAAG+AGG + Chr2:56805817-56805836 MsG0280009699.01.T01:intron 45.0%
! TGCCTCTTCTAGAAGTGCAA+TGG - Chr2:56805822-56805841 None:intergenic 45.0%
!!! AACGTGGGACTTGGGTTTTT+TGG - Chr2:56804591-56804610 None:intergenic 45.0%
!!! ACGTGGGACTTGGGTTTTTT+GGG - Chr2:56804590-56804609 None:intergenic 45.0%
!! AAATAAAATTCAATATAAAT+AGG - Chr2:56805638-56805657 None:intergenic 5.0%
!!! ATTTATATTGAATTTTATTT+AGG + Chr2:56805638-56805657 MsG0280009699.01.T01:intron 5.0%
AGGGATAGGAGAGTGGAAGA+CGG - Chr2:56803691-56803710 None:intergenic 50.0%
CAACACACCAGTGAGAGATC+TGG - Chr2:56804716-56804735 None:intergenic 50.0%
CACGGTTGCAAGTGAGGTTA+AGG + Chr2:56805430-56805449 MsG0280009699.01.T01:CDS 50.0%
CGTCCCCAATTGATGCTATC+GGG + Chr2:56805530-56805549 MsG0280009699.01.T01:CDS 50.0%
CTTAACCTCACTTGCAACCG+TGG - Chr2:56805432-56805451 None:intergenic 50.0%
GCATCTAGTTGCTGTGGAAC+TGG + Chr2:56805406-56805425 MsG0280009699.01.T01:intron 50.0%
GCATTCCACACCTTACAAGC+TGG + Chr2:56804649-56804668 MsG0280009699.01.T01:intron 50.0%
GTTGCAAGTGAGGTTAAGGC+AGG + Chr2:56805434-56805453 MsG0280009699.01.T01:CDS 50.0%
TAGGCTCCCTCATTGCGAAA+TGG - Chr2:56806258-56806277 None:intergenic 50.0%
TCATGGACCCTGTTGGACTT+CGG + Chr2:56805727-56805746 MsG0280009699.01.T01:CDS 50.0%
TCCAACAGGGTCCATGAGTT+GGG - Chr2:56805724-56805743 None:intergenic 50.0%
TCCGATCGTGGCCTTTACTA+TGG + Chr2:56804492-56804511 MsG0280009699.01.T01:intron 50.0%
TCGTCAATCTCTGCACTTGC+AGG - Chr2:56805176-56805195 None:intergenic 50.0%
TCTCTCACTGGTGTGTTGTC+GGG + Chr2:56804718-56804737 MsG0280009699.01.T01:intron 50.0%
TGCAAGTGAGGTTAAGGCAG+GGG + Chr2:56805436-56805455 MsG0280009699.01.T01:CDS 50.0%
TTACGCTCCAGATCTCTCAC+TGG + Chr2:56804706-56804725 MsG0280009699.01.T01:intron 50.0%
TTTCGCAATGAGGGAGCCTA+CGG + Chr2:56806258-56806277 MsG0280009699.01.T01:CDS 50.0%
! GATAAGGTTGGTTCCGATCG+TGG + Chr2:56804480-56804499 MsG0280009699.01.T01:intron 50.0%
! TCTCTGCACTTGCAGGCTTT+TGG - Chr2:56805169-56805188 None:intergenic 50.0%
!!! CGTGGGACTTGGGTTTTTTG+GGG - Chr2:56804589-56804608 None:intergenic 50.0%
ACCCAACTCATGGACCCTGT+TGG + Chr2:56805720-56805739 MsG0280009699.01.T01:CDS 55.0%
AGTTGCTGTGGAACTGGCCA+CGG + Chr2:56805412-56805431 MsG0280009699.01.T01:intron 55.0%
ATGACCCATTTCGCCGGAGA+AGG - Chr2:56803737-56803756 None:intergenic 55.0%
ATTGCCAATCACGGAACGCG+TGG - Chr2:56805027-56805046 None:intergenic 55.0%
ATTTCGCCGGAGAAGGTGAC+CGG - Chr2:56803730-56803749 None:intergenic 55.0%
CACTGGTGTGTTGTCGGGTT+TGG + Chr2:56804723-56804742 MsG0280009699.01.T01:intron 55.0%
GCTCCCTCATTGCGAAATGG+TGG - Chr2:56806255-56806274 None:intergenic 55.0%
GTCACCTTCTCCGGCGAAAT+GGG + Chr2:56803730-56803749 MsG0280009699.01.T01:CDS 55.0%
GTCCAACAGGGTCCATGAGT+TGG - Chr2:56805725-56805744 None:intergenic 55.0%
TTGGGGATGACCCATTTCGC+CGG - Chr2:56803743-56803762 None:intergenic 55.0%
ACTGGCCACGGTTGCAAGTG+AGG + Chr2:56805424-56805443 MsG0280009699.01.T01:CDS 60.0%
ATCGCTCCGGTCACCTTCTC+CGG + Chr2:56803721-56803740 MsG0280009699.01.T01:CDS 60.0%
CGCGTGGCAGGTAGAAAAGC+AGG - Chr2:56805011-56805030 None:intergenic 60.0%
GGTCACCTTCTCCGGCGAAA+TGG + Chr2:56803729-56803748 MsG0280009699.01.T01:CDS 60.0%
TCCACTCTCCTATCCCTCGC+CGG + Chr2:56803694-56803713 MsG0280009699.01.T01:CDS 60.0%
CCAATCACGGAACGCGTGGC+AGG - Chr2:56805023-56805042 None:intergenic 65.0%
CCTGCCACGCGTTCCGTGAT+TGG + Chr2:56805020-56805039 MsG0280009699.01.T01:intron 65.0%
GGAGAAGGTGACCGGAGCGA+TGG - Chr2:56803722-56803741 None:intergenic 65.0%
TCCGGCGAGGGATAGGAGAG+TGG - Chr2:56803698-56803717 None:intergenic 65.0%
CGATGGCTCCGGCGAGGGAT+AGG - Chr2:56803705-56803724 None:intergenic 70.0%
GGTGACCGGAGCGATGGCTC+CGG - Chr2:56803716-56803735 None:intergenic 70.0%
CCTCGCCGGAGCCATCGCTC+CGG + Chr2:56803708-56803727 MsG0280009699.01.T01:CDS 75.0%
CGGAGCGATGGCTCCGGCGA+GGG - Chr2:56803710-56803729 None:intergenic 75.0%
! CCGGAGCGATGGCTCCGGCG+AGG - Chr2:56803711-56803730 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 56803682 56806305 56803682 ID=MsG0280009699.01;Name=MsG0280009699.01
Chr2 mRNA 56803682 56806305 56803682 ID=MsG0280009699.01.T01;Parent=MsG0280009699.01;Name=MsG0280009699.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0.5|0.6|1|1|1|5|0|226
Chr2 exon 56803682 56803810 56803682 ID=MsG0280009699.01.T01:exon:20831;Parent=MsG0280009699.01.T01
Chr2 exon 56805089 56805215 56805089 ID=MsG0280009699.01.T01:exon:20832;Parent=MsG0280009699.01.T01
Chr2 exon 56805414 56805551 56805414 ID=MsG0280009699.01.T01:exon:20833;Parent=MsG0280009699.01.T01
Chr2 exon 56805660 56805748 56805660 ID=MsG0280009699.01.T01:exon:20834;Parent=MsG0280009699.01.T01
Chr2 exon 56806108 56806305 56806108 ID=MsG0280009699.01.T01:exon:20835;Parent=MsG0280009699.01.T01
Chr2 CDS 56803682 56803810 56803682 ID=MsG0280009699.01.T01:cds;Parent=MsG0280009699.01.T01
Chr2 CDS 56805089 56805215 56805089 ID=MsG0280009699.01.T01:cds;Parent=MsG0280009699.01.T01
Chr2 CDS 56805414 56805551 56805414 ID=MsG0280009699.01.T01:cds;Parent=MsG0280009699.01.T01
Chr2 CDS 56805660 56805748 56805660 ID=MsG0280009699.01.T01:cds;Parent=MsG0280009699.01.T01
Chr2 CDS 56806108 56806305 56806108 ID=MsG0280009699.01.T01:cds;Parent=MsG0280009699.01.T01
Gene Sequence

>MsG0280009699.01.T01

ATGATACCGTCTTCCACTCTCCTATCCCTCGCCGGAGCCATCGCTCCGGTCACCTTCTCCGGCGAAATGGGTCATCCCCAAACCAACTCTTCTTCAAACCCAGAAAGGTTTTCACCAGTTTCTGCAAAAGATGTAGGCGAAGATACTGATGATATGTATGATGAATTATTAAATAACTATGGGCAAGTAGTATATAAGAGAAAAGACCAAAAGCCTGCAAGTGCAGAGATTGACGATGATTCTGAGAGCCTATCATTTGCTGTGGAACTGGCCACGGTTGCAAGTGAGGTTAAGGCAGGGGATATAAAGGTCTTGTTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAATTGATGCTATCGGGTCGAGAATTAGAGACCGGGCTGAAAAGAAATATGGTAAAATTCCAAATGGAGACTCAAAACCCAACTCATGGACCCTGTTGGACTTCGTCTGATCCAGGTTCATCTTATGATTGTTTCTTGATCACAGGTGATGTTGTTGTCCATTTATTTCTTCCCCCACAAAGAGCTTTCTATAATTTGGAAGAGTTTTATGGTAATGCAACATCGGTAGAGCTGCCTTTTGAAAATCAACCACCATTTCGCAATGAGGGAGCCTACGGTTTCTCAGATGATGCAGACAGTTGA

Protein sequence

>MsG0280009699.01.T01

MIPSSTLLSLAGAIAPVTFSGEMGHPQTNSSSNPERFSPVSAKDVGEDTDDMYDELLNNYGQVVYKRKDQKPASAEIDDDSESLSFAVELATVASEVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQLMLSGRELETGLKRNMVKFQMETQNPTHGPCWTSSDPGSSYDCFLITGDVVVHLFLPPQRAFYNLEEFYGNATSVELPFENQPPFRNEGAYGFSDDADS*