Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025564.01.T01 | XP_039690731.1 | 73.653 | 167 | 10 | 3 | 1 | 133 | 510 | 676 | 7.19E-73 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025564.01.T01 | Q0WVX5 | 32.584 | 89 | 59 | 1 | 5 | 93 | 870 | 957 | 6.59E-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025564.01.T01 | A0A396HQK0 | 73.653 | 167 | 9 | 4 | 1 | 133 | 510 | 675 | 6.73e-72 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048748.01 | MsG0580025564.01 | 0.834143 | 3.553460e-56 | 4.179250e-53 |
| MsG0080048938.01 | MsG0580025564.01 | 0.843726 | 1.173673e-58 | 1.852968e-55 |
| MsG0080049069.01 | MsG0580025564.01 | 0.818159 | 2.266675e-52 | 1.683668e-49 |
| MsG0180000160.01 | MsG0580025564.01 | 0.803251 | 3.811249e-49 | 1.906044e-46 |
| MsG0180000489.01 | MsG0580025564.01 | 0.808491 | 3.016805e-50 | 1.727370e-47 |
| MsG0180001548.01 | MsG0580025564.01 | 0.852136 | 5.626191e-61 | 1.164366e-57 |
| MsG0180002184.01 | MsG0580025564.01 | 0.832189 | 1.089616e-55 | 1.208882e-52 |
| MsG0180002449.01 | MsG0580025564.01 | 0.820438 | 6.859874e-53 | 5.427904e-50 |
| MsG0180002523.01 | MsG0580025564.01 | 0.826599 | 2.483121e-54 | 2.339224e-51 |
| MsG0180002700.01 | MsG0580025564.01 | 0.806092 | 9.730406e-50 | 5.235053e-47 |
| MsG0180004025.01 | MsG0580025564.01 | 0.824099 | 9.695470e-54 | 8.505153e-51 |
| MsG0180005005.01 | MsG0580025564.01 | 0.891027 | 5.775797e-74 | 4.979829e-70 |
| MsG0180005339.01 | MsG0580025564.01 | 0.834158 | 3.524309e-56 | 4.146894e-53 |
| MsG0280011110.01 | MsG0580025564.01 | -0.838779 | 2.347982e-57 | 3.177745e-54 |
| MsG0280011362.01 | MsG0580025564.01 | 0.845322 | 4.366974e-59 | 7.250552e-56 |
| MsG0380012868.01 | MsG0580025564.01 | 0.805554 | 1.261993e-49 | 6.696364e-47 |
| MsG0480019384.01 | MsG0580025564.01 | 0.854882 | 9.153187e-62 | 2.074473e-58 |
| MsG0480019812.01 | MsG0580025564.01 | 0.804938 | 1.698712e-49 | 8.872988e-47 |
| MsG0480020322.01 | MsG0580025564.01 | 0.815632 | 8.368414e-52 | 5.800854e-49 |
| MsG0480020323.01 | MsG0580025564.01 | 0.810918 | 9.078382e-51 | 5.543256e-48 |
| MsG0480020473.01 | MsG0580025564.01 | 0.834611 | 2.712507e-56 | 3.235624e-53 |
| MsG0480020797.01 | MsG0580025564.01 | -0.801044 | 1.083947e-48 | 5.125742e-46 |
| MsG0480022162.01 | MsG0580025564.01 | 0.844619 | 6.757272e-59 | 1.097132e-55 |
| MsG0480022664.01 | MsG0580025564.01 | 0.800943 | 1.137083e-48 | 5.362974e-46 |
| MsG0480023348.01 | MsG0580025564.01 | -0.822030 | 2.946034e-53 | 2.437118e-50 |
| MsG0480023454.01 | MsG0580025564.01 | -0.838484 | 2.797838e-57 | 3.752638e-54 |
| MsG0580024872.01 | MsG0580025564.01 | 0.828132 | 1.065381e-54 | 1.049578e-51 |
| MsG0580025280.01 | MsG0580025564.01 | 0.840319 | 9.342580e-58 | 1.325765e-54 |
| MsG0580025558.01 | MsG0580025564.01 | -0.817835 | 2.683473e-52 | 1.975688e-49 |
| MsG0580025564.01 | MsG0580025565.01 | 0.844013 | 9.834874e-59 | 1.566825e-55 |
| MsG0580025564.01 | MsG0580025827.01 | 0.829970 | 3.819715e-55 | 3.970374e-52 |
| MsG0580025564.01 | MsG0580027732.01 | 0.823320 | 1.475636e-53 | 1.266291e-50 |
| MsG0580025564.01 | MsG0580027884.01 | -0.806681 | 7.308782e-50 | 3.991612e-47 |
| MsG0580025564.01 | MsG0580028419.01 | 0.828918 | 6.883486e-55 | 6.937659e-52 |
| MsG0580025564.01 | MsG0580029237.01 | 0.851753 | 7.225913e-61 | 1.477353e-57 |
| MsG0580025564.01 | MsG0580029511.01 | 0.824503 | 7.792107e-54 | 6.914726e-51 |
| MsG0580025564.01 | MsG0580030071.01 | 0.845099 | 5.016674e-59 | 8.269626e-56 |
| MsG0580025564.01 | MsG0680030606.01 | 0.808057 | 3.733264e-50 | 2.113235e-47 |
| MsG0580025564.01 | MsG0680030608.01 | 0.809623 | 1.726864e-50 | 1.018958e-47 |
| MsG0580025564.01 | MsG0680030907.01 | 0.841758 | 3.912497e-58 | 5.806300e-55 |
| MsG0580025564.01 | MsG0680031406.01 | 0.800165 | 1.638075e-48 | 7.574355e-46 |
| MsG0580025564.01 | MsG0680035664.01 | 0.807263 | 5.506638e-50 | 3.053207e-47 |
| MsG0580025564.01 | MsG0680035665.01 | 0.840093 | 1.070281e-57 | 1.508503e-54 |
| MsG0580025564.01 | MsG0780036666.01 | 0.829464 | 5.072397e-55 | 5.195434e-52 |
| MsG0580025564.01 | MsG0780036803.01 | 0.809765 | 1.609219e-50 | 9.531285e-48 |
| MsG0580025564.01 | MsG0780037052.01 | -0.850963 | 1.208623e-60 | 2.408669e-57 |
| MsG0580025564.01 | MsG0780038056.01 | 0.800055 | 1.724614e-48 | 7.952527e-46 |
| MsG0580025564.01 | MsG0780038783.01 | 0.807542 | 4.805328e-50 | 2.683659e-47 |
| MsG0580025564.01 | MsG0780040213.01 | 0.805354 | 1.389869e-49 | 7.337447e-47 |
| MsG0580025564.01 | MsG0780040235.01 | 0.815281 | 1.002019e-51 | 6.878796e-49 |
| MsG0580025564.01 | MsG0780040881.01 | -0.835385 | 1.731040e-56 | 2.113499e-53 |
| MsG0580025564.01 | MsG0780041129.01 | 0.820620 | 6.230691e-53 | 4.954494e-50 |
| MsG0580025564.01 | MsG0880041852.01 | 0.816667 | 4.914075e-52 | 3.503937e-49 |
| MsG0580025564.01 | MsG0880042086.01 | 0.818196 | 2.224159e-52 | 1.653755e-49 |
| MsG0580025564.01 | MsG0880042415.01 | 0.802310 | 5.961325e-49 | 2.910815e-46 |
| MsG0580025564.01 | MsG0880042512.01 | 0.863585 | 2.240518e-64 | 6.827034e-61 |
| MsG0580025564.01 | MsG0880043107.01 | 0.824373 | 8.361673e-54 | 7.392378e-51 |
| MsG0580025564.01 | MsG0880043298.01 | 0.815394 | 9.455735e-52 | 6.511367e-49 |
| MsG0580025564.01 | MsG0880043622.01 | 0.813116 | 3.012439e-51 | 1.949930e-48 |
| MsG0580025564.01 | MsG0880043650.01 | 0.818433 | 1.965551e-52 | 1.471188e-49 |
| MsG0580025564.01 | MsG0880043829.01 | 0.815350 | 9.669817e-52 | 6.650844e-49 |
| MsG0580025564.01 | MsG0880045285.01 | 0.812961 | 3.257994e-51 | 2.100121e-48 |
| MsG0580025564.01 | MsG0880045312.01 | 0.857719 | 1.347607e-62 | 3.357572e-59 |
| MsG0580025564.01 | MsG0880045783.01 | 0.817946 | 2.533100e-52 | 1.870538e-49 |
| MsG0580025564.01 | MsG0880046207.01 | 0.825321 | 4.997284e-54 | 4.539976e-51 |
| MsG0580025564.01 | MsG0880046434.01 | -0.810994 | 8.739770e-51 | 5.347605e-48 |
| MsG0380016516.01 | MsG0580025564.01 | 0.803629 | 3.181478e-49 | 1.606633e-46 |
| MsG0380016792.01 | MsG0580025564.01 | 0.808460 | 3.064213e-50 | 1.753111e-47 |
| MsG0380017014.01 | MsG0580025564.01 | -0.821827 | 3.282442e-53 | 2.700014e-50 |
| MsG0380017793.01 | MsG0580025564.01 | 0.861013 | 1.381921e-63 | 3.852836e-60 |
| MsG0380017934.01 | MsG0580025564.01 | 0.814654 | 1.380032e-51 | 9.314023e-49 |
| MsG0480018226.01 | MsG0580025564.01 | 0.809935 | 1.479851e-50 | 8.803665e-48 |
| MsG0480018337.01 | MsG0580025564.01 | 0.801488 | 8.795675e-49 | 4.205791e-46 |
| MsG0480018426.01 | MsG0580025564.01 | 0.817807 | 2.723154e-52 | 2.003347e-49 |
| MsG0280007647.01 | MsG0580025564.01 | 0.808222 | 3.443074e-50 | 1.957580e-47 |
| MsG0280008098.01 | MsG0580025564.01 | 0.814166 | 1.769384e-51 | 1.178488e-48 |
| MsG0280008343.01 | MsG0580025564.01 | 0.808751 | 2.655141e-50 | 1.530579e-47 |
| MsG0280009699.01 | MsG0580025564.01 | 0.806213 | 9.173491e-50 | 4.950896e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025564.01.T01 | MTR_5g030600 | 72.455 | 167 | 11 | 4 | 1 | 133 | 509 | 674 | 5.20e-74 | 233 |
| MsG0580025564.01.T01 | MTR_7g037650 | 91.765 | 85 | 6 | 1 | 7 | 91 | 155 | 238 | 9.45e-48 | 160 |
| MsG0580025564.01.T01 | MTR_4g094595 | 27.027 | 148 | 71 | 2 | 5 | 116 | 819 | 965 | 7.97e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025564.01.T01 | AT4G18240 | 32.584 | 89 | 59 | 1 | 5 | 93 | 870 | 957 | 6.72e-13 | 64.7 |
Find 27 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCCGCAGTTTATATTTA+TGG | 0.032226 | 5:-20561643 | MsG0580025564.01.T01:CDS |
| ATATGTAGCTCAAAGCTTTA+AGG | 0.154547 | 5:-20560833 | MsG0580025564.01.T01:intron |
| CATTATTCTTCGTTTCCATT+TGG | 0.324608 | 5:+20559947 | None:intergenic |
| CAAATGGAAACGAAGAATAA+TGG | 0.372793 | 5:-20559946 | MsG0580025564.01.T01:CDS |
| GGCACTAGAATCACTTCATA+TGG | 0.401474 | 5:-20561592 | MsG0580025564.01.T01:CDS |
| ATTCTTCGTTTCCATTTGGA+TGG | 0.413455 | 5:+20559951 | None:intergenic |
| ATCACTTCATATGGAATTCA+AGG | 0.413713 | 5:-20561583 | MsG0580025564.01.T01:intron |
| GAATCAGAGTCAACTGCTAC+TGG | 0.439908 | 5:+20560798 | None:intergenic |
| CAATGGCACATGATTTATCA+TGG | 0.442232 | 5:-20559920 | MsG0580025564.01.T01:CDS |
| ATTCAAGTCTGGTCTTTCAC+TGG | 0.460075 | 5:+20561617 | None:intergenic |
| TCTAGTGCCTGATTCAAGTC+TGG | 0.461256 | 5:+20561606 | None:intergenic |
| TGAAAGACCAGACTTGAATC+AGG | 0.492845 | 5:-20561613 | MsG0580025564.01.T01:CDS |
| TAGCTCAAAGCTTTAAGGTA+TGG | 0.509482 | 5:-20560828 | MsG0580025564.01.T01:CDS |
| TTCTTCGTTTCCATTTGGAT+GGG | 0.513572 | 5:+20559952 | None:intergenic |
| AGAGGAGTAACCCATCCAAA+TGG | 0.524697 | 5:-20559962 | MsG0580025564.01.T01:CDS |
| CTTACTGGGGTTTCATCAGT+AGG | 0.525772 | 5:+20561168 | None:intergenic |
| CTATCGCATTTATTATTCGC+AGG | 0.527294 | 5:-20561225 | MsG0580025564.01.T01:CDS |
| GCTATAAAGAATATGTGAAG+TGG | 0.567967 | 5:-20559858 | MsG0580025564.01.T01:exon |
| ACGAAGAATAATGGAAGCAA+TGG | 0.575742 | 5:-20559937 | MsG0580025564.01.T01:CDS |
| TTACTCAAGAGAAGGAAAGC+CGG | 0.582749 | 5:-20559689 | MsG0580025564.01.T01:three_prime_UTR |
| AAGTAATCTTACTCAAGAGA+AGG | 0.590473 | 5:-20559697 | MsG0580025564.01.T01:three_prime_UTR |
| CTATAAAGAATATGTGAAGT+GGG | 0.591922 | 5:-20559857 | MsG0580025564.01.T01:exon |
| AATGGCACATGATTTATCAT+GGG | 0.600151 | 5:-20559919 | MsG0580025564.01.T01:CDS |
| TCGTGAGGCTAACAAAGTTG+CGG | 0.633006 | 5:+20559657 | None:intergenic |
| GCACATGATTTATCATGGGA+TGG | 0.639732 | 5:-20559915 | MsG0580025564.01.T01:CDS |
| GTCTCCATAAATATAAACTG+CGG | 0.694325 | 5:+20561639 | None:intergenic |
| TGAATGCTACGAAGTTCATG+TGG | 0.756833 | 5:-20559892 | MsG0580025564.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTCTAAATAAATATTACTAT+TGG | + | Chr5:20559982-20560001 | None:intergenic | 15.0% |
| !!! | TAAACAAATTTGATTTTAAG+CGG | - | Chr5:20560272-20560291 | MsG0580025564.01.T01:intron | 15.0% |
| !! | AAGTAGAAGTGATTAATATA+TGG | + | Chr5:20561204-20561223 | None:intergenic | 20.0% |
| !! | ATAAGTCACAAATATTCTTA+AGG | + | Chr5:20560566-20560585 | None:intergenic | 20.0% |
| !! | GTGTACACAATATTAATTAA+GGG | + | Chr5:20560941-20560960 | None:intergenic | 20.0% |
| !! | TGTGTACACAATATTAATTA+AGG | + | Chr5:20560942-20560961 | None:intergenic | 20.0% |
| !!! | ATTAGTTATTGACTTTGATA+TGG | - | Chr5:20561328-20561347 | MsG0580025564.01.T01:intron | 20.0% |
| !!! | ATTCACTATTTTGAGATATA+TGG | - | Chr5:20561528-20561547 | MsG0580025564.01.T01:intron | 20.0% |
| !!! | TTAGTTATTGACTTTGATAT+GGG | - | Chr5:20561329-20561348 | MsG0580025564.01.T01:intron | 20.0% |
| ! | AAGTTAATCAACAATACCTT+TGG | - | Chr5:20560694-20560713 | MsG0580025564.01.T01:intron | 25.0% |
| ! | AATGAAATGTATGTAGTTTC+TGG | - | Chr5:20560747-20560766 | MsG0580025564.01.T01:intron | 25.0% |
| ! | CATACATTTCATTTCATCAA+TGG | + | Chr5:20560740-20560759 | None:intergenic | 25.0% |
| ! | CATTTATGACAGTTGTTAAT+AGG | - | Chr5:20560980-20560999 | MsG0580025564.01.T01:intron | 25.0% |
| ! | CTACTTTAGTAAACTATCAT+TGG | - | Chr5:20561218-20561237 | MsG0580025564.01.T01:CDS | 25.0% |
| ! | CTATAAAGAATATGTGAAGT+GGG | - | Chr5:20561460-20561479 | MsG0580025564.01.T01:intron | 25.0% |
| ! | GATTAATATATGGATCGTAT+TGG | + | Chr5:20561194-20561213 | None:intergenic | 25.0% |
| ! | GTTTATGAAGTTCCTATTAA+AGG | + | Chr5:20560647-20560666 | None:intergenic | 25.0% |
| ! | TGTACATATTCATTCATTGA+TGG | - | Chr5:20561037-20561056 | MsG0580025564.01.T01:intron | 25.0% |
| ! | TTAACAAGTACTAATAGCTT+CGG | - | Chr5:20559857-20559876 | MsG0580025564.01.T01:exon | 25.0% |
| ! | TTAATAGGCAATAGTTAACT+GGG | - | Chr5:20560995-20561014 | MsG0580025564.01.T01:intron | 25.0% |
| !! | ACAATGAAAATCAAGAGTAT+AGG | + | Chr5:20559764-20559783 | None:intergenic | 25.0% |
| !! | CAATGAAAATCAAGAGTATA+GGG | + | Chr5:20559763-20559782 | None:intergenic | 25.0% |
| !!! | CAAGTTGATAAAATCAAAGT+TGG | + | Chr5:20560205-20560224 | None:intergenic | 25.0% |
| AAGTAATCTTACTCAAGAGA+AGG | - | Chr5:20561620-20561639 | MsG0580025564.01.T01:CDS | 30.0% | |
| AATGGCACATGATTTATCAT+GGG | - | Chr5:20561398-20561417 | MsG0580025564.01.T01:intron | 30.0% | |
| ATATGTAGCTCAAAGCTTTA+AGG | - | Chr5:20560484-20560503 | MsG0580025564.01.T01:intron | 30.0% | |
| ATCACTTCATATGGAATTCA+AGG | - | Chr5:20559734-20559753 | MsG0580025564.01.T01:three_prime_UTR | 30.0% | |
| ATGTGAGTGTTACACAAATA+TGG | + | Chr5:20560601-20560620 | None:intergenic | 30.0% | |
| ATTTCATTTCATCAATGGCA+AGG | + | Chr5:20560735-20560754 | None:intergenic | 30.0% | |
| CAAATGGAAACGAAGAATAA+TGG | - | Chr5:20561371-20561390 | MsG0580025564.01.T01:intron | 30.0% | |
| CATTATTCTTCGTTTCCATT+TGG | + | Chr5:20561373-20561392 | None:intergenic | 30.0% | |
| GCTATAAAGAATATGTGAAG+TGG | - | Chr5:20561459-20561478 | MsG0580025564.01.T01:intron | 30.0% | |
| GTCTCCATAAATATAAACTG+CGG | + | Chr5:20559681-20559700 | None:intergenic | 30.0% | |
| GTTAATAGGCAATAGTTAAC+TGG | - | Chr5:20560994-20561013 | MsG0580025564.01.T01:intron | 30.0% | |
| TAATAGGCAATAGTTAACTG+GGG | - | Chr5:20560996-20561015 | MsG0580025564.01.T01:intron | 30.0% | |
| TCACATCATTCATATTTGCT+CGG | - | Chr5:20560615-20560634 | MsG0580025564.01.T01:intron | 30.0% | |
| !!! | GACACTTATTTTGAAACAGA+GGG | + | Chr5:20560837-20560856 | None:intergenic | 30.0% |
| AATAGCACAAATAGTCGATG+TGG | - | Chr5:20560391-20560410 | MsG0580025564.01.T01:intron | 35.0% | |
| ACCTTAAACGACCCTTAATT+TGG | - | Chr5:20561083-20561102 | MsG0580025564.01.T01:intron | 35.0% | |
| AGGTTCTTTCACATAGATAG+AGG | + | Chr5:20561067-20561086 | None:intergenic | 35.0% | |
| AGTTGGATAATCAGAACACA+AGG | + | Chr5:20560188-20560207 | None:intergenic | 35.0% | |
| ATAATCAGAACACAAGGGAA+TGG | + | Chr5:20560182-20560201 | None:intergenic | 35.0% | |
| ATAGCACAAATAGTCGATGT+GGG | - | Chr5:20560392-20560411 | MsG0580025564.01.T01:intron | 35.0% | |
| ATCTTGTGTCTAACACATGT+AGG | - | Chr5:20561149-20561168 | MsG0580025564.01.T01:intron | 35.0% | |
| ATTCTTCGTTTCCATTTGGA+TGG | + | Chr5:20561369-20561388 | None:intergenic | 35.0% | |
| CAATGGCACATGATTTATCA+TGG | - | Chr5:20561397-20561416 | MsG0580025564.01.T01:intron | 35.0% | |
| CACATCATTCATATTTGCTC+GGG | - | Chr5:20560616-20560635 | MsG0580025564.01.T01:intron | 35.0% | |
| CTATCGCATTTATTATTCGC+AGG | - | Chr5:20560092-20560111 | MsG0580025564.01.T01:intron | 35.0% | |
| GTAAACTATCATTGGTCATG+TGG | - | Chr5:20561226-20561245 | MsG0580025564.01.T01:CDS | 35.0% | |
| GTTGGATAATCAGAACACAA+GGG | + | Chr5:20560187-20560206 | None:intergenic | 35.0% | |
| TAATCAGAACACAAGGGAAT+GGG | + | Chr5:20560181-20560200 | None:intergenic | 35.0% | |
| TCATTCATTCTGCATGACAA+TGG | + | Chr5:20559895-20559914 | None:intergenic | 35.0% | |
| TCATTCCATTCAAAATCTGC+AGG | - | Chr5:20560025-20560044 | MsG0580025564.01.T01:intron | 35.0% | |
| TCCAAATTAAGGGTCGTTTA+AGG | + | Chr5:20561087-20561106 | None:intergenic | 35.0% | |
| TGTTATAAATTCCTTGCGAC+TGG | - | Chr5:20559794-20559813 | MsG0580025564.01.T01:three_prime_UTR | 35.0% | |
| TTCTTCGTTTCCATTTGGAT+GGG | + | Chr5:20561368-20561387 | None:intergenic | 35.0% | |
| ! | AAACGACCCTTAATTTGGAA+GGG | - | Chr5:20561088-20561107 | MsG0580025564.01.T01:intron | 35.0% |
| ! | ACGAAGAATAATGGAAGCAA+TGG | - | Chr5:20561380-20561399 | MsG0580025564.01.T01:intron | 35.0% |
| ! | ATCATCCTGCAGATTTTGAA+TGG | + | Chr5:20560033-20560052 | None:intergenic | 35.0% |
| ! | GCAAAAACACAGAGAGATTT+TGG | + | Chr5:20561277-20561296 | None:intergenic | 35.0% |
| ! | TAAACGACCCTTAATTTGGA+AGG | - | Chr5:20561087-20561106 | MsG0580025564.01.T01:intron | 35.0% |
| !! | ACACAATCATCGAGTATTGA+TGG | - | Chr5:20559827-20559846 | MsG0580025564.01.T01:three_prime_UTR | 35.0% |
| !! | GTGTAGATTTTAGAGGTCAA+TGG | - | Chr5:20560312-20560331 | MsG0580025564.01.T01:intron | 35.0% |
| !! | TAGCTCAAAGCTTTAAGGTA+TGG | - | Chr5:20560489-20560508 | MsG0580025564.01.T01:intron | 35.0% |
| !!! | CGACACTTATTTTGAAACAG+AGG | + | Chr5:20560838-20560857 | None:intergenic | 35.0% |
| AATCAGAACACAAGGGAATG+GGG | + | Chr5:20560180-20560199 | None:intergenic | 40.0% | |
| ATGTAGGTGTCAACATGTGT+TGG | - | Chr5:20561165-20561184 | MsG0580025564.01.T01:intron | 40.0% | |
| CAAATAGTCGATGTGGGATA+TGG | - | Chr5:20560398-20560417 | MsG0580025564.01.T01:intron | 40.0% | |
| CGCTCCGCAGTTTATATTTA+TGG | - | Chr5:20559674-20559693 | MsG0580025564.01.T01:three_prime_UTR | 40.0% | |
| CTTCATAAACCATGACCAAG+AGG | - | Chr5:20560657-20560676 | MsG0580025564.01.T01:intron | 40.0% | |
| GCACATGATTTATCATGGGA+TGG | - | Chr5:20561402-20561421 | MsG0580025564.01.T01:intron | 40.0% | |
| GGCACTAGAATCACTTCATA+TGG | - | Chr5:20559725-20559744 | MsG0580025564.01.T01:three_prime_UTR | 40.0% | |
| TGAAAGACCAGACTTGAATC+AGG | - | Chr5:20559704-20559723 | MsG0580025564.01.T01:three_prime_UTR | 40.0% | |
| TGAATGCTACGAAGTTCATG+TGG | - | Chr5:20561425-20561444 | MsG0580025564.01.T01:intron | 40.0% | |
| TGACTTTGATATGGGTGTAG+AGG | - | Chr5:20561337-20561356 | MsG0580025564.01.T01:intron | 40.0% | |
| TTACTCAAGAGAAGGAAAGC+CGG | - | Chr5:20561628-20561647 | MsG0580025564.01.T01:CDS | 40.0% | |
| TTGAGTACTTAGTTGCCTCT+TGG | + | Chr5:20560675-20560694 | None:intergenic | 40.0% | |
| ! | ACCTTTGGAAACATGTCACT+TGG | - | Chr5:20560709-20560728 | MsG0580025564.01.T01:intron | 40.0% |
| ! | ATTCAAGTCTGGTCTTTCAC+TGG | + | Chr5:20559703-20559722 | None:intergenic | 40.0% |
| ! | TTTAAGCGGAGATTTTCACG+TGG | - | Chr5:20560286-20560305 | MsG0580025564.01.T01:intron | 40.0% |
| !! | TCATCGAGTATTGATGGCTT+TGG | - | Chr5:20559833-20559852 | MsG0580025564.01.T01:three_prime_UTR | 40.0% |
| !!! | AAAGTTGCGGATGCTTTTTC+CGG | + | Chr5:20561650-20561669 | None:intergenic | 40.0% |
| ACTGCCTCCCTTCCAAATTA+AGG | + | Chr5:20561098-20561117 | None:intergenic | 45.0% | |
| ACTTAGTTGCCTCTTGGTCA+TGG | + | Chr5:20560669-20560688 | None:intergenic | 45.0% | |
| AGAGGAGTAACCCATCCAAA+TGG | - | Chr5:20561355-20561374 | MsG0580025564.01.T01:intron | 45.0% | |
| CTGCCTCCCTTCCAAATTAA+GGG | + | Chr5:20561097-20561116 | None:intergenic | 45.0% | |
| CTTACTGGGGTTTCATCAGT+AGG | + | Chr5:20560152-20560171 | None:intergenic | 45.0% | |
| GAATCAGAGTCAACTGCTAC+TGG | + | Chr5:20560522-20560541 | None:intergenic | 45.0% | |
| GCCAAGTGACATGTTTCCAA+AGG | + | Chr5:20560713-20560732 | None:intergenic | 45.0% | |
| TCTAGTGCCTGATTCAAGTC+TGG | + | Chr5:20559714-20559733 | None:intergenic | 45.0% | |
| ! | CTGCGGAGCGTTAATAATCA+TGG | + | Chr5:20559664-20559683 | None:intergenic | 45.0% |
| ! | GTGGCACGTGTAGATTTTAG+AGG | - | Chr5:20560305-20560324 | MsG0580025564.01.T01:intron | 45.0% |
| AGAACACAAGGGAATGGGGA+TGG | + | Chr5:20560176-20560195 | None:intergenic | 50.0% | |
| GCTCGGGTGACACCTTTAAT+AGG | - | Chr5:20560632-20560651 | MsG0580025564.01.T01:intron | 50.0% | |
| ! | CGACCCTTAATTTGGAAGGG+AGG | - | Chr5:20561091-20561110 | MsG0580025564.01.T01:intron | 50.0% |
| ! | GAATGGGGATGGACTTACTG+GGG | + | Chr5:20560165-20560184 | None:intergenic | 50.0% |
| ! | GGAATGGGGATGGACTTACT+GGG | + | Chr5:20560166-20560185 | None:intergenic | 50.0% |
| ! | GGGAATGGGGATGGACTTAC+TGG | + | Chr5:20560167-20560186 | None:intergenic | 55.0% |
| TGCACGTGCAACCAGTCGCA+AGG | + | Chr5:20559808-20559827 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 20559663 | 20561676 | 20559663 | ID=MsG0580025564.01;Name=MsG0580025564.01 |
| Chr5 | mRNA | 20559663 | 20561676 | 20559663 | ID=MsG0580025564.01.T01;Parent=MsG0580025564.01;Name=MsG0580025564.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.5|1|0|0.5|4|200|133 |
| Chr5 | exon | 20559663 | 20559982 | 20559663 | ID=MsG0580025564.01.T01:exon:8978;Parent=MsG0580025564.01.T01 |
| Chr5 | exon | 20560779 | 20560847 | 20560779 | ID=MsG0580025564.01.T01:exon:8977;Parent=MsG0580025564.01.T01 |
| Chr5 | exon | 20561173 | 20561292 | 20561173 | ID=MsG0580025564.01.T01:exon:8976;Parent=MsG0580025564.01.T01 |
| Chr5 | exon | 20561584 | 20561676 | 20561584 | ID=MsG0580025564.01.T01:exon:8975;Parent=MsG0580025564.01.T01 |
| Chr5 | CDS | 20561584 | 20561676 | 20561584 | ID=MsG0580025564.01.T01:cds;Parent=MsG0580025564.01.T01 |
| Chr5 | CDS | 20561173 | 20561292 | 20561173 | ID=MsG0580025564.01.T01:cds;Parent=MsG0580025564.01.T01 |
| Chr5 | CDS | 20560779 | 20560847 | 20560779 | ID=MsG0580025564.01.T01:cds;Parent=MsG0580025564.01.T01 |
| Chr5 | CDS | 20559863 | 20559982 | 20559863 | ID=MsG0580025564.01.T01:cds;Parent=MsG0580025564.01.T01 |
| Chr5 | three_prime_UTR | 20559663 | 20559862 | 20559663 | ID=MsG0580025564.01.T01:three_prime_utr;Parent=MsG0580025564.01.T01 |
| Gene Sequence |
| Protein sequence |
