AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006479.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006479.01.T01 MTR_2g009310 89.975 399 29 3 1 398 1 389 0.0 654
MsG0280006479.01.T01 MTR_4g093830 46.366 399 160 15 3 392 1 354 2.29e-92 282
MsG0280006479.01.T01 MTR_5g064890 38.869 283 139 9 32 299 21 284 2.51e-53 181
MsG0280006479.01.T01 MTR_8g089880 35.496 262 142 5 44 282 11 268 3.64e-47 162
MsG0280006479.01.T01 MTR_5g030010 35.366 328 172 13 68 382 60 360 1.41e-40 148
MsG0280006479.01.T01 MTR_8g066780 32.024 331 178 12 68 390 60 351 1.18e-31 123
MsG0280006479.01.T01 MTR_4g106680 33.520 179 102 3 39 209 8 177 8.05e-24 100
MsG0280006479.01.T01 MTR_3g110190 36.232 138 71 2 69 206 14 134 1.15e-22 98.2
MsG0280006479.01.T01 MTR_8g063660 36.054 147 86 2 63 209 1 139 3.06e-22 97.1
MsG0280006479.01.T01 MTR_5g034790 33.333 165 102 2 42 206 28 184 9.53e-21 93.2
MsG0280006479.01.T01 MTR_4g129420 33.333 219 112 8 35 236 14 215 9.63e-21 94.4
MsG0280006479.01.T01 MTR_6g007737 35.032 157 81 3 62 212 66 207 2.97e-20 92.0
MsG0280006479.01.T01 MTR_3g094000 40.625 96 55 1 128 221 81 176 4.95e-20 87.0
MsG0280006479.01.T01 MTR_1g043410 34.503 171 90 6 46 209 13 168 5.61e-20 90.1
MsG0280006479.01.T01 MTR_1g082550 31.553 206 109 6 51 243 26 212 8.47e-20 90.5
MsG0280006479.01.T01 MTR_3g100400 41.525 118 60 1 138 255 130 238 1.07e-19 90.5
MsG0280006479.01.T01 MTR_4g120270 48.101 79 39 1 138 216 80 156 1.23e-19 88.6
MsG0280006479.01.T01 MTR_6g087150 44.086 93 50 1 135 225 90 182 2.04e-19 89.4
MsG0280006479.01.T01 MTR_7g116220 33.333 186 100 5 63 234 3 178 2.91e-19 85.1
MsG0280006479.01.T01 MTR_5g026720 49.367 79 35 2 142 215 66 144 5.11e-19 84.0
MsG0280006479.01.T01 MTR_5g064980 45.882 85 43 1 138 219 108 192 8.59e-19 87.8
MsG0280006479.01.T01 MTR_3g464780 42.975 121 58 3 126 235 90 210 1.08e-18 85.5
MsG0280006479.01.T01 MTR_2g436100 31.220 205 119 5 52 253 18 203 1.74e-18 85.5
MsG0280006479.01.T01 MTR_7g113800 50.000 82 32 2 138 213 91 169 3.18e-18 85.9
MsG0280006479.01.T01 MTR_8g023400 29.744 195 114 5 67 261 30 201 3.71e-18 85.1
MsG0280006479.01.T01 MTR_7g076250 28.079 203 119 5 68 267 12 190 6.08e-18 81.6
MsG0280006479.01.T01 MTR_5g066250 45.833 72 39 0 138 209 134 205 7.42e-18 85.1
MsG0280006479.01.T01 MTR_1g074190 45.122 82 39 1 134 209 95 176 8.26e-18 84.3
MsG0280006479.01.T01 MTR_3g086730 34.722 144 75 5 148 284 62 193 1.85e-17 81.3
MsG0280006479.01.T01 MTR_1g070140 27.551 294 168 12 46 317 26 296 2.08e-17 83.2
MsG0280006479.01.T01 MTR_2g055790 44.000 75 39 1 138 212 77 148 2.48e-17 80.1
MsG0280006479.01.T01 MTR_3g086700 36.066 122 66 4 163 284 74 183 4.32e-17 79.3
MsG0280006479.01.T01 MTR_7g073200 49.275 69 35 0 138 206 81 149 5.87e-17 78.6
MsG0280006479.01.T01 MTR_8g071815 59.615 52 21 0 164 215 90 141 7.44e-17 78.6
MsG0280006479.01.T01 MTR_5g026730 55.357 56 25 0 160 215 90 145 7.50e-17 78.2
MsG0280006479.01.T01 MTR_3g099650 40.659 91 51 1 135 222 104 194 1.01e-16 81.6
MsG0280006479.01.T01 MTR_8g073120 44.595 74 37 2 138 208 70 142 1.01e-16 78.6
MsG0280006479.01.T01 MTR_7g116210 51.429 70 33 1 138 207 10 78 1.67e-16 75.5
MsG0280006479.01.T01 MTR_2g096350 33.333 108 65 2 139 239 108 215 2.04e-16 78.2
MsG0280006479.01.T01 MTR_7g116200 51.429 70 33 1 138 207 68 136 2.74e-16 76.6
MsG0280006479.01.T01 MTR_3g091620 48.611 72 37 0 136 207 99 170 2.98e-16 79.7
MsG0280006479.01.T01 MTR_4g063070 40.260 77 44 1 138 212 308 384 6.96e-16 79.0
MsG0280006479.01.T01 MTR_7g096690 42.169 83 44 1 134 212 66 148 1.07e-15 77.8
MsG0280006479.01.T01 MTR_4g056590 41.096 73 40 1 138 210 100 169 1.35e-15 75.1
MsG0280006479.01.T01 MTR_7g117540 46.479 71 37 1 139 209 77 146 1.81e-15 76.6
MsG0280006479.01.T01 MTR_3g114500 52.727 55 26 0 155 209 62 116 2.67e-15 72.4
MsG0280006479.01.T01 MTR_3g078470 42.857 77 42 1 133 207 71 147 4.29e-15 74.3
MsG0280006479.01.T01 MTR_2g041200 61.702 47 18 0 163 209 108 154 4.41e-15 73.2
MsG0280006479.01.T01 MTR_5g064990 29.048 210 102 6 48 253 48 214 4.94e-15 76.6
MsG0280006479.01.T01 MTR_5g022920 59.574 47 19 0 160 206 185 231 5.26e-15 74.3
MsG0280006479.01.T01 MTR_6g055030 30.818 159 80 4 53 207 37 169 6.64e-15 75.5
MsG0280006479.01.T01 MTR_7g116180 47.945 73 35 1 138 207 67 139 7.03e-15 72.8
MsG0280006479.01.T01 MTR_8g092960 62.222 45 17 0 162 206 128 172 7.09e-15 73.6
MsG0280006479.01.T01 MTR_8g092840 62.222 45 17 0 162 206 138 182 8.65e-15 73.6
MsG0280006479.01.T01 MTR_7g079290 38.462 91 50 2 138 224 125 213 9.37e-15 73.2
MsG0280006479.01.T01 MTR_5g024730 57.778 45 19 0 162 206 103 147 1.02e-14 73.2
MsG0280006479.01.T01 MTR_1g070425 47.945 73 35 1 138 207 68 140 1.08e-14 72.4
MsG0280006479.01.T01 MTR_3g078450 39.175 97 52 3 113 207 56 147 1.14e-14 73.2
MsG0280006479.01.T01 MTR_4g030070 28.767 146 84 3 137 267 84 224 1.46e-14 72.8
MsG0280006479.01.T01 MTR_5g071930 64.583 48 17 0 163 210 88 135 1.60e-14 72.0
MsG0280006479.01.T01 MTR_8g092970 60.000 45 18 0 162 206 129 173 1.82e-14 72.4
MsG0280006479.01.T01 MTR_7g079280 39.726 73 42 1 136 206 78 150 2.05e-14 71.2
MsG0280006479.01.T01 MTR_8g093010 42.857 84 37 2 162 236 132 213 2.10e-14 72.4
MsG0280006479.01.T01 MTR_1g026070 45.902 61 31 1 155 215 62 120 2.32e-14 70.1
MsG0280006479.01.T01 MTR_8g092990 60.000 45 18 0 162 206 139 183 2.53e-14 72.4
MsG0280006479.01.T01 MTR_8g028465 43.662 71 38 1 136 206 88 156 2.63e-14 71.6
MsG0280006479.01.T01 MTR_3g116000 49.091 55 28 0 156 210 96 150 2.97e-14 71.2
MsG0280006479.01.T01 MTR_3g071300 40.278 72 43 0 157 228 99 170 3.60e-14 70.5
MsG0280006479.01.T01 MTR_8g009190 45.833 72 36 1 142 210 80 151 3.94e-14 73.2
MsG0280006479.01.T01 MTR_2g090950 54.902 51 23 0 163 213 122 172 4.48e-14 71.6
MsG0280006479.01.T01 MTR_2g044570 50.877 57 28 0 153 209 72 128 4.85e-14 72.8
MsG0280006479.01.T01 MTR_8g092985 57.778 45 19 0 162 206 136 180 5.06e-14 70.9
MsG0280006479.01.T01 MTR_8g092930 57.778 45 19 0 162 206 137 181 5.54e-14 71.2
MsG0280006479.01.T01 MTR_3g095560 55.102 49 22 0 162 210 134 182 5.94e-14 71.2
MsG0280006479.01.T01 MTR_1g492830 31.544 149 71 5 69 209 8 133 6.00e-14 71.2
MsG0280006479.01.T01 MTR_2g090905 55.319 47 21 0 163 209 70 116 6.27e-14 68.6
MsG0280006479.01.T01 MTR_8g019710 54.902 51 23 0 159 209 49 99 7.05e-14 68.9
MsG0280006479.01.T01 MTR_8g074900 57.778 45 19 0 162 206 178 222 7.59e-14 70.9
MsG0280006479.01.T01 MTR_2g035800 37.234 94 55 1 126 215 60 153 1.29e-13 68.6
MsG0280006479.01.T01 MTR_1g100737 48.077 52 27 0 156 207 115 166 1.47e-13 69.3
MsG0280006479.01.T01 MTR_8g032690 42.466 73 40 1 164 234 19 91 2.44e-13 66.2
MsG0280006479.01.T01 MTR_5g092750 53.061 49 23 0 164 212 185 233 2.61e-13 69.3
MsG0280006479.01.T01 MTR_5g082940 38.889 72 42 1 138 207 75 146 4.28e-13 67.4
MsG0280006479.01.T01 MTR_6g055030 64.286 42 15 0 166 207 97 138 7.53e-13 68.9
MsG0280006479.01.T01 MTR_7g117350 30.380 158 81 5 55 206 222 356 1.09e-12 69.3
MsG0280006479.01.T01 MTR_7g059360 48.333 60 31 0 161 220 155 214 1.09e-12 67.8
MsG0280006479.01.T01 MTR_5g092790 54.348 46 21 0 164 209 185 230 1.16e-12 67.8
MsG0280006479.01.T01 MTR_7g108855 39.726 73 42 1 139 209 67 139 4.26e-12 65.1
MsG0280006479.01.T01 MTR_1g056350 46.154 52 28 0 162 213 101 152 5.31e-12 64.3
MsG0280006479.01.T01 MTR_3g078520 43.548 62 32 1 146 207 88 146 6.13e-12 63.9
MsG0280006479.01.T01 MTR_5g076990 52.941 51 24 0 163 213 105 155 1.24e-11 65.5
MsG0280006479.01.T01 MTR_4g094725 55.814 43 19 0 164 206 106 148 2.06e-11 62.0
MsG0280006479.01.T01 MTR_7g117350 29.605 152 78 5 61 206 236 364 4.13e-11 64.3
MsG0280006479.01.T01 MTR_8g099495 33.333 108 62 4 126 231 309 408 5.12e-11 64.3
MsG0280006479.01.T01 MTR_4g022410 42.647 68 38 1 146 212 94 161 5.24e-11 62.0
MsG0280006479.01.T01 MTR_3g012550 25.568 176 107 6 52 220 6 164 5.58e-11 61.6
MsG0280006479.01.T01 MTR_8g066740 55.556 45 20 0 163 207 105 149 6.26e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006479.01.T01 AT1G72220 44.954 218 107 5 50 266 72 277 4.06e-46 164
MsG0280006479.01.T01 AT4G33565 48.000 175 63 4 126 300 179 325 2.79e-43 155
MsG0280006479.01.T01 AT5G10380 70.732 82 24 0 129 210 100 181 3.74e-38 139
MsG0280006479.01.T01 AT5G17600 38.247 251 134 8 138 375 116 358 1.29e-37 139
MsG0280006479.01.T01 AT3G03550 36.260 262 131 8 25 273 16 254 4.32e-36 135
MsG0280006479.01.T01 AT4G17905 31.359 287 150 10 21 283 17 280 3.32e-27 110
MsG0280006479.01.T01 AT4G17905 31.359 287 150 10 21 283 43 306 3.83e-27 110
MsG0280006479.01.T01 AT1G23980 35.333 150 91 2 60 209 46 189 3.99e-26 108
MsG0280006479.01.T01 AT2G20030 32.544 169 87 4 44 206 19 166 4.06e-21 94.7
MsG0280006479.01.T01 AT3G48030 35.000 140 81 2 68 206 41 171 4.36e-21 92.4
MsG0280006479.01.T01 AT3G48030 35.000 140 81 2 68 206 119 249 1.15e-20 92.8
MsG0280006479.01.T01 AT1G72200 47.475 99 48 2 138 233 115 212 7.08e-20 91.3
MsG0280006479.01.T01 AT2G18650 52.632 76 35 1 138 212 99 174 3.66e-19 89.4
MsG0280006479.01.T01 AT5G05810 52.174 69 33 0 138 206 120 188 4.35e-19 89.0
MsG0280006479.01.T01 AT5G01880 46.575 73 39 0 138 210 79 151 8.88e-19 83.2
MsG0280006479.01.T01 AT5G40250 32.121 165 81 4 61 209 39 188 1.37e-18 87.0
MsG0280006479.01.T01 AT2G47560 53.247 77 34 1 135 209 77 153 1.53e-18 84.3
MsG0280006479.01.T01 AT4G28890 50.000 72 36 0 135 206 94 165 1.59e-18 87.4
MsG0280006479.01.T01 AT3G62690 48.864 88 41 2 139 224 88 173 1.77e-18 84.7
MsG0280006479.01.T01 AT5G57750 33.557 149 78 4 63 206 32 164 2.13e-18 83.6
MsG0280006479.01.T01 AT3G10910 30.128 156 92 2 51 206 18 156 3.01e-18 82.4
MsG0280006479.01.T01 AT4G30400 50.649 77 37 1 131 206 100 176 3.08e-18 86.7
MsG0280006479.01.T01 AT1G22500 51.899 79 35 1 138 213 89 167 3.95e-18 85.9
MsG0280006479.01.T01 AT4G10150 25.984 254 146 6 38 285 7 224 4.08e-18 83.6
MsG0280006479.01.T01 AT5G43420 28.085 235 119 7 134 320 94 326 4.10e-18 85.5
MsG0280006479.01.T01 AT1G04360 35.220 159 61 5 68 209 46 179 5.23e-18 85.5
MsG0280006479.01.T01 AT1G35330 48.101 79 38 1 138 213 100 178 5.71e-18 84.7
MsG0280006479.01.T01 AT3G16720 35.766 137 69 4 134 259 90 218 1.30e-17 83.2
MsG0280006479.01.T01 AT3G05200 42.105 114 50 4 138 245 99 202 1.31e-17 84.3
MsG0280006479.01.T01 AT2G34990 30.323 155 87 4 62 213 9 145 2.16e-17 82.4
MsG0280006479.01.T01 AT2G34990 30.323 155 87 4 62 213 31 167 2.20e-17 82.8
MsG0280006479.01.T01 AT2G35000 32.778 180 90 6 64 234 48 205 2.48e-17 83.2
MsG0280006479.01.T01 AT4G15975 32.353 136 72 3 138 254 51 185 7.18e-17 79.7
MsG0280006479.01.T01 AT5G05280 44.304 79 43 1 138 216 88 165 7.72e-17 78.2
MsG0280006479.01.T01 AT4G40070 31.481 162 82 4 49 207 32 167 9.36e-17 80.9
MsG0280006479.01.T01 AT4G10160 37.069 116 58 4 137 252 71 171 9.67e-17 79.3
MsG0280006479.01.T01 AT3G18930 45.455 88 38 2 138 215 120 207 2.14e-16 80.9
MsG0280006479.01.T01 AT3G18930 45.455 88 38 2 138 215 120 207 2.14e-16 80.9
MsG0280006479.01.T01 AT3G18930 45.455 88 38 2 138 215 120 207 2.14e-16 80.9
MsG0280006479.01.T01 AT5G66070 36.434 129 72 3 78 206 100 218 3.50e-16 77.4
MsG0280006479.01.T01 AT5G66070 36.434 129 72 3 78 206 100 218 3.50e-16 77.4
MsG0280006479.01.T01 AT4G09120 45.570 79 40 1 138 213 94 172 5.24e-16 79.0
MsG0280006479.01.T01 AT4G09100 43.421 76 40 1 138 210 56 131 6.43e-16 74.3
MsG0280006479.01.T01 AT5G66070 41.837 98 50 3 110 206 151 242 9.27e-16 76.6
MsG0280006479.01.T01 AT2G42350 55.102 49 22 0 159 207 95 143 2.84e-15 74.7
MsG0280006479.01.T01 AT4G09110 41.772 79 43 1 138 213 94 172 3.37e-15 76.3
MsG0280006479.01.T01 AT5G27420 55.172 58 23 1 149 206 112 166 3.74e-15 76.6
MsG0280006479.01.T01 AT1G49230 46.154 78 32 2 162 239 129 196 4.00e-15 74.3
MsG0280006479.01.T01 AT2G17730 63.043 46 17 0 164 209 196 241 4.45e-15 74.7
MsG0280006479.01.T01 AT1G72310 43.836 73 40 1 152 224 115 186 4.70e-15 75.9
MsG0280006479.01.T01 AT1G53820 38.158 76 46 1 134 209 91 165 7.75e-15 75.1
MsG0280006479.01.T01 AT4G17920 30.864 162 94 4 48 206 6 152 9.62e-15 74.7
MsG0280006479.01.T01 AT1G49210 45.946 74 39 1 138 210 108 181 1.02e-14 73.6
MsG0280006479.01.T01 AT4G35840 65.116 43 15 0 164 206 191 233 1.05e-14 73.6
MsG0280006479.01.T01 AT1G49200 56.000 50 22 0 161 210 133 182 1.31e-14 73.2
MsG0280006479.01.T01 AT1G20823 55.102 49 22 0 162 210 109 157 2.00e-14 72.0
MsG0280006479.01.T01 AT3G18773 37.383 107 62 3 138 243 103 205 2.01e-14 72.4
MsG0280006479.01.T01 AT3G60220 45.070 71 36 1 142 209 92 162 2.01e-14 74.3
MsG0280006479.01.T01 AT2G27940 37.805 82 48 2 126 207 105 183 2.04e-14 72.8
MsG0280006479.01.T01 AT2G42360 28.387 155 87 4 61 213 25 157 2.30e-14 72.8
MsG0280006479.01.T01 AT1G76410 43.243 74 41 1 138 210 77 150 2.47e-14 71.2
MsG0280006479.01.T01 AT1G28040 32.867 143 74 6 67 206 172 295 4.22e-14 72.8
MsG0280006479.01.T01 AT3G61550 31.737 167 79 6 67 206 20 178 5.71e-14 70.9
MsG0280006479.01.T01 AT2G46494 30.986 142 74 3 68 206 238 358 7.35e-14 72.8
MsG0280006479.01.T01 AT2G46493 35.644 101 57 3 112 206 82 180 9.37e-14 69.7
MsG0280006479.01.T01 AT2G25410 37.113 97 54 2 124 217 284 376 9.80e-14 72.4
MsG0280006479.01.T01 AT2G46160 29.252 147 70 4 87 214 57 188 1.10e-13 70.1
MsG0280006479.01.T01 AT2G46160 29.252 147 70 4 87 214 57 188 1.10e-13 70.1
MsG0280006479.01.T01 AT4G09130 44.737 76 33 2 138 207 91 163 1.16e-13 72.0
MsG0280006479.01.T01 AT2G35420 35.484 93 55 2 138 227 77 167 1.18e-13 70.9
MsG0280006479.01.T01 AT2G35910 35.484 93 57 1 138 227 121 213 1.26e-13 70.1
MsG0280006479.01.T01 AT1G33480 36.486 74 46 1 137 210 74 146 1.77e-13 70.5
MsG0280006479.01.T01 AT4G35480 57.778 45 19 0 162 206 111 155 1.82e-13 69.3
MsG0280006479.01.T01 AT1G49220 61.364 44 17 0 163 206 134 177 2.49e-13 69.7
MsG0280006479.01.T01 AT2G37580 39.759 83 49 1 128 209 105 187 2.77e-13 69.3
MsG0280006479.01.T01 AT5G42200 52.941 51 24 0 162 212 102 152 5.94e-13 67.0
MsG0280006479.01.T01 AT2G46495 38.043 92 50 2 129 217 254 341 1.31e-12 68.9
MsG0280006479.01.T01 AT5G58580 31.098 164 103 6 138 295 111 270 1.43e-12 68.6
MsG0280006479.01.T01 AT2G46495 39.080 87 46 2 134 217 287 369 1.54e-12 68.9
MsG0280006479.01.T01 AT2G17450 50.000 54 25 1 155 206 91 144 1.95e-12 65.9
MsG0280006479.01.T01 AT3G19140 38.462 78 47 1 129 206 45 121 3.17e-12 64.3
MsG0280006479.01.T01 AT5G47610 48.000 50 26 0 163 212 106 155 4.58e-12 64.3
MsG0280006479.01.T01 AT3G14320 54.545 44 20 0 163 206 87 130 1.11e-11 64.3
MsG0280006479.01.T01 AT1G32361 40.845 71 38 2 137 206 129 196 1.42e-11 65.5
MsG0280006479.01.T01 AT5G07040 41.270 63 33 1 164 226 94 152 1.55e-11 62.8
MsG0280006479.01.T01 AT1G74410 47.917 48 25 0 162 209 174 221 1.72e-11 63.9
MsG0280006479.01.T01 AT5G46650 33.600 125 75 3 138 254 85 209 1.92e-11 64.7
MsG0280006479.01.T01 AT5G06490 29.915 117 65 3 109 218 77 183 2.07e-11 63.2
MsG0280006479.01.T01 AT1G53010 40.260 77 37 2 138 206 97 172 2.20e-11 62.8
MsG0280006479.01.T01 AT3G60966 54.000 50 23 0 164 213 62 111 2.90e-11 61.2
MsG0280006479.01.T01 AT4G35840 61.538 39 15 0 168 206 227 265 2.93e-11 63.9
MsG0280006479.01.T01 AT5G53110 29.710 138 72 5 72 206 257 372 3.21e-11 64.7
MsG0280006479.01.T01 AT4G17245 43.056 72 39 2 152 221 89 160 6.22e-11 61.2

Find 68 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGAGTCTAATATTAT+TGG 0.171503 2:+2550225 MsG0280006479.01.T01:CDS
GGTGAAAGTGAAACCAATTT+AGG 0.183802 2:+2550021 MsG0280006479.01.T01:CDS
ACTATCTTCAAACCCTAAAT+TGG 0.190275 2:-2550034 None:intergenic
GTGCAATTTATATCAGTTTC+AGG 0.221190 2:+2549530 MsG0280006479.01.T01:CDS
AGTTGCTAGGGTTGAGTCTT+TGG 0.245207 2:+2549921 MsG0280006479.01.T01:CDS
GGTGATGGAGGATAGTAATA+AGG 0.264267 2:-2549406 None:intergenic
GGTTAATGGAAATGAGAATT+TGG 0.267606 2:+2550290 MsG0280006479.01.T01:CDS
TGATTCTGAATTGAGGAATA+TGG 0.277924 2:+2550062 MsG0280006479.01.T01:CDS
GATGCTATTTCAAAGGTTAA+TGG 0.289608 2:+2550276 MsG0280006479.01.T01:CDS
CTGTGGTGGATCATCCTATT+TGG 0.300381 2:+2549653 MsG0280006479.01.T01:CDS
GTGAAAGTGAAACCAATTTA+GGG 0.330008 2:+2550022 MsG0280006479.01.T01:CDS
AGAAAAGCTACTACTTCCTT+TGG 0.346806 2:-2550322 None:intergenic
TAGGCCAACAAGATATTTGC+AGG 0.357718 2:+2550347 MsG0280006479.01.T01:CDS
TACGAACTTGACCTCTTCAT+TGG 0.358700 2:-2550381 None:intergenic
GCCTAGGAGATCTGTTTCTA+TGG 0.359627 2:+2550155 MsG0280006479.01.T01:CDS
TGATTCTAGTTCAAGTTCAT+TGG 0.360919 2:+2549963 MsG0280006479.01.T01:CDS
TGGTCTTGTTGTTGTGATGA+TGG 0.389006 2:-2549436 None:intergenic
ATTTGGTATATTCGAACCTT+AGG 0.393202 2:+2549670 MsG0280006479.01.T01:CDS
ATTTACCTTGTATTGATACT+TGG 0.395348 2:+2549842 MsG0280006479.01.T01:CDS
GAAGAAGAAGAAGCAGCTTA+AGG 0.398449 2:+2549557 MsG0280006479.01.T01:CDS
GATGATGGTGGTGGTGGTGA+TGG 0.398518 2:-2549421 None:intergenic
ACTGTAGGGTTATTAACAAT+TGG 0.403000 2:-2549901 None:intergenic
CAACAGCTCAACAAAATGAT+AGG 0.414938 2:+2549593 MsG0280006479.01.T01:CDS
ATTGCATCATAGAAAATTGA+TGG 0.419713 2:+2549291 MsG0280006479.01.T01:CDS
AGAGGTGAAGGTTTGATTGA+AGG 0.419735 2:+2549739 MsG0280006479.01.T01:CDS
ATGGGAAATTTCTTCTGTCT+TGG 0.420117 2:+2550406 MsG0280006479.01.T01:CDS
CTTGTATTGATACTTGGCTT+AGG 0.434318 2:+2549848 MsG0280006479.01.T01:CDS
CGGTTAGTGTCGTTCGGCCT+AGG 0.439561 2:+2550139 MsG0280006479.01.T01:CDS
AAGAAGAAGAAGCAGCTTAA+GGG 0.441987 2:+2549558 MsG0280006479.01.T01:CDS
AAGGTTCGAATATACCAAAT+AGG 0.442246 2:-2549667 None:intergenic
GTGATGGAGGATAGTAATAA+GGG 0.446938 2:-2549405 None:intergenic
AAGTTTCTGAAAATATCATT+TGG 0.455151 2:-2550450 None:intergenic
AGAGGTCAAGTTCGTACAAT+GGG 0.473529 2:+2550388 MsG0280006479.01.T01:CDS
AGGAATATGGAAGAAAATGA+AGG 0.480759 2:+2550075 MsG0280006479.01.T01:CDS
TGTAAGTATAAGAGAGGTGA+AGG 0.482072 2:+2549727 MsG0280006479.01.T01:CDS
TGTTGTGATGATGGTGGTGG+TGG 0.484989 2:-2549427 None:intergenic
GGATAGTAATAAGGGATTTG+TGG 0.485017 2:-2549397 None:intergenic
TTAATAACCCTACAGTTGCT+AGG 0.487636 2:+2549908 MsG0280006479.01.T01:CDS
ACACCCTGCAAATATCTTGT+TGG 0.493613 2:-2550351 None:intergenic
CAATGATGATGCTATTTCAA+AGG 0.497440 2:+2550269 MsG0280006479.01.T01:CDS
TTGAGGTATGTGAAAATGAA+AGG 0.499251 2:+2550103 MsG0280006479.01.T01:CDS
ATACTAATTGTCCTATGTGT+AGG 0.501670 2:+2549875 MsG0280006479.01.T01:CDS
GATGGTGGTGGTGGTGATGG+AGG 0.507673 2:-2549418 None:intergenic
TCGATGCGGTTAGTGTCGTT+CGG 0.509630 2:+2550133 MsG0280006479.01.T01:CDS
TACTAATTGTCCTATGTGTA+GGG 0.520232 2:+2549876 MsG0280006479.01.T01:CDS
TAATAACCCTACAGTTGCTA+GGG 0.525677 2:+2549909 MsG0280006479.01.T01:CDS
AGTGTTTGTAAGTATAAGAG+AGG 0.532026 2:+2549721 MsG0280006479.01.T01:CDS
TGAAAAGCATGATGACACTT+AGG 0.532713 2:-2549820 None:intergenic
TGTTGTTGTGATGATGGTGG+TGG 0.537470 2:-2549430 None:intergenic
CTTGACCTCTTCATTGGACT+AGG 0.544954 2:-2550375 None:intergenic
GATGTTTCTGATGAAAATAG+TGG 0.564866 2:+2550000 MsG0280006479.01.T01:CDS
CTAAGCCAAGTATCAATACA+AGG 0.569710 2:-2549847 None:intergenic
GACTCAACCCTAGCAACTGT+AGG 0.588401 2:-2549916 None:intergenic
GGAATATGGAAGAAAATGAA+GGG 0.590398 2:+2550076 MsG0280006479.01.T01:CDS
AACAGATTGATGAAGACCTA+AGG 0.594317 2:-2549686 None:intergenic
AATTTGGCAACTACTTCCAA+AGG 0.595349 2:+2550306 MsG0280006479.01.T01:CDS
TCCATAGAAACAGATCTCCT+AGG 0.599299 2:-2550156 None:intergenic
AAGAGGTCAAGTTCGTACAA+TGG 0.601002 2:+2550387 MsG0280006479.01.T01:CDS
GCATCAACATGGATCTGTGG+TGG 0.608189 2:+2549639 MsG0280006479.01.T01:CDS
ACTCAACCCTAGCAACTGTA+GGG 0.614286 2:-2549915 None:intergenic
ACAATTGGAGCCCTACACAT+AGG 0.622227 2:-2549886 None:intergenic
TCTTGTTGTTGTGATGATGG+TGG 0.622792 2:-2549433 None:intergenic
AGGCCAACAAGATATTTGCA+GGG 0.633418 2:+2550348 MsG0280006479.01.T01:CDS
GAAGAACAACAGCATCAACA+TGG 0.634184 2:+2549628 MsG0280006479.01.T01:CDS
GTGTTCCTAGTCCAATGAAG+AGG 0.650481 2:+2550370 MsG0280006479.01.T01:CDS
ACAGCATCAACATGGATCTG+TGG 0.662494 2:+2549636 MsG0280006479.01.T01:CDS
AAGCAAGAAGAGAAAGCGTG+AGG 0.681564 2:-2549483 None:intergenic
TGAAAGGCAAGTTGTCGATG+CGG 0.682963 2:+2550119 MsG0280006479.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTGAGTCTAATATTAT+TGG + Chr2:2550225-2550244 MsG0280006479.01.T01:CDS 20.0%
!!! AAGTTTCTGAAAATATCATT+TGG - Chr2:2550453-2550472 None:intergenic 20.0%
! ATTGCATCATAGAAAATTGA+TGG + Chr2:2549291-2549310 MsG0280006479.01.T01:CDS 25.0%
!! ATTTACCTTGTATTGATACT+TGG + Chr2:2549842-2549861 MsG0280006479.01.T01:CDS 25.0%
!!! TGAAGTAATTGTTGATTTTG+TGG - Chr2:2549462-2549481 None:intergenic 25.0%
AAGGTTCGAATATACCAAAT+AGG - Chr2:2549670-2549689 None:intergenic 30.0%
ACTATCTTCAAACCCTAAAT+TGG - Chr2:2550037-2550056 None:intergenic 30.0%
ACTGTAGGGTTATTAACAAT+TGG - Chr2:2549904-2549923 None:intergenic 30.0%
AGGAATATGGAAGAAAATGA+AGG + Chr2:2550075-2550094 MsG0280006479.01.T01:CDS 30.0%
AGTGTTTGTAAGTATAAGAG+AGG + Chr2:2549721-2549740 MsG0280006479.01.T01:CDS 30.0%
ATACTAATTGTCCTATGTGT+AGG + Chr2:2549875-2549894 MsG0280006479.01.T01:CDS 30.0%
ATTTGGTATATTCGAACCTT+AGG + Chr2:2549670-2549689 MsG0280006479.01.T01:CDS 30.0%
GGAATATGGAAGAAAATGAA+GGG + Chr2:2550076-2550095 MsG0280006479.01.T01:CDS 30.0%
GGTTAATGGAAATGAGAATT+TGG + Chr2:2550290-2550309 MsG0280006479.01.T01:CDS 30.0%
GTGAAAGTGAAACCAATTTA+GGG + Chr2:2550022-2550041 MsG0280006479.01.T01:CDS 30.0%
GTGCAATTTATATCAGTTTC+AGG + Chr2:2549530-2549549 MsG0280006479.01.T01:CDS 30.0%
TACTAATTGTCCTATGTGTA+GGG + Chr2:2549876-2549895 MsG0280006479.01.T01:CDS 30.0%
TGATTCTGAATTGAGGAATA+TGG + Chr2:2550062-2550081 MsG0280006479.01.T01:CDS 30.0%
TTGAGGTATGTGAAAATGAA+AGG + Chr2:2550103-2550122 MsG0280006479.01.T01:CDS 30.0%
! GAAGTAGTAGCTTTTCTTTT+AGG + Chr2:2550328-2550347 MsG0280006479.01.T01:CDS 30.0%
! GATGTTTCTGATGAAAATAG+TGG + Chr2:2550000-2550019 MsG0280006479.01.T01:CDS 30.0%
!! CAATGATGATGCTATTTCAA+AGG + Chr2:2550269-2550288 MsG0280006479.01.T01:CDS 30.0%
!! GATGCTATTTCAAAGGTTAA+TGG + Chr2:2550276-2550295 MsG0280006479.01.T01:CDS 30.0%
!! GTGTTTTTGATTCTGAATTG+AGG + Chr2:2550055-2550074 MsG0280006479.01.T01:CDS 30.0%
!! TGATTCTAGTTCAAGTTCAT+TGG + Chr2:2549963-2549982 MsG0280006479.01.T01:CDS 30.0%
!!! AGTAATTGTTGATTTTGTGG+TGG - Chr2:2549459-2549478 None:intergenic 30.0%
AACAGATTGATGAAGACCTA+AGG - Chr2:2549689-2549708 None:intergenic 35.0%
AAGAAGAAGAAGCAGCTTAA+GGG + Chr2:2549558-2549577 MsG0280006479.01.T01:CDS 35.0%
AATTTGGCAACTACTTCCAA+AGG + Chr2:2550306-2550325 MsG0280006479.01.T01:CDS 35.0%
AGAAAAGCTACTACTTCCTT+TGG - Chr2:2550325-2550344 None:intergenic 35.0%
ATGGGAAATTTCTTCTGTCT+TGG + Chr2:2550406-2550425 MsG0280006479.01.T01:CDS 35.0%
CAACAGCTCAACAAAATGAT+AGG + Chr2:2549593-2549612 MsG0280006479.01.T01:CDS 35.0%
CTAAGCCAAGTATCAATACA+AGG - Chr2:2549850-2549869 None:intergenic 35.0%
GGATAGTAATAAGGGATTTG+TGG - Chr2:2549400-2549419 None:intergenic 35.0%
GGTGAAAGTGAAACCAATTT+AGG + Chr2:2550021-2550040 MsG0280006479.01.T01:CDS 35.0%
TAATAACCCTACAGTTGCTA+GGG + Chr2:2549909-2549928 MsG0280006479.01.T01:CDS 35.0%
TGTAAGTATAAGAGAGGTGA+AGG + Chr2:2549727-2549746 MsG0280006479.01.T01:CDS 35.0%
TTAATAACCCTACAGTTGCT+AGG + Chr2:2549908-2549927 MsG0280006479.01.T01:CDS 35.0%
! CTTGTATTGATACTTGGCTT+AGG + Chr2:2549848-2549867 MsG0280006479.01.T01:CDS 35.0%
! GTGATGGAGGATAGTAATAA+GGG - Chr2:2549408-2549427 None:intergenic 35.0%
! TGAAAAGCATGATGACACTT+AGG - Chr2:2549823-2549842 None:intergenic 35.0%
!! TTTTGTTGAGCTGTTGATGA+TGG - Chr2:2549589-2549608 None:intergenic 35.0%
!!! AGAAAATGAAGGGCATTTTG+AGG + Chr2:2550086-2550105 MsG0280006479.01.T01:CDS 35.0%
AAGAGGTCAAGTTCGTACAA+TGG + Chr2:2550387-2550406 MsG0280006479.01.T01:CDS 40.0%
ACACCCTGCAAATATCTTGT+TGG - Chr2:2550354-2550373 None:intergenic 40.0%
AGAGGTCAAGTTCGTACAAT+GGG + Chr2:2550388-2550407 MsG0280006479.01.T01:CDS 40.0%
AGAGGTGAAGGTTTGATTGA+AGG + Chr2:2549739-2549758 MsG0280006479.01.T01:CDS 40.0%
AGGCCAACAAGATATTTGCA+GGG + Chr2:2550348-2550367 MsG0280006479.01.T01:CDS 40.0%
GAAGAACAACAGCATCAACA+TGG + Chr2:2549628-2549647 MsG0280006479.01.T01:CDS 40.0%
GAAGAAGAAGAAGCAGCTTA+AGG + Chr2:2549557-2549576 MsG0280006479.01.T01:CDS 40.0%
TACGAACTTGACCTCTTCAT+TGG - Chr2:2550384-2550403 None:intergenic 40.0%
TAGGCCAACAAGATATTTGC+AGG + Chr2:2550347-2550366 MsG0280006479.01.T01:CDS 40.0%
TCCATAGAAACAGATCTCCT+AGG - Chr2:2550159-2550178 None:intergenic 40.0%
!! GGTGATGGAGGATAGTAATA+AGG - Chr2:2549409-2549428 None:intergenic 40.0%
!! TCTTGTTGTTGTGATGATGG+TGG - Chr2:2549436-2549455 None:intergenic 40.0%
!! TGGTCTTGTTGTTGTGATGA+TGG - Chr2:2549439-2549458 None:intergenic 40.0%
ACAATTGGAGCCCTACACAT+AGG - Chr2:2549889-2549908 None:intergenic 45.0%
ACAGCATCAACATGGATCTG+TGG + Chr2:2549636-2549655 MsG0280006479.01.T01:CDS 45.0%
ACTCAACCCTAGCAACTGTA+GGG - Chr2:2549918-2549937 None:intergenic 45.0%
AGTTGCTAGGGTTGAGTCTT+TGG + Chr2:2549921-2549940 MsG0280006479.01.T01:CDS 45.0%
CTTGACCTCTTCATTGGACT+AGG - Chr2:2550378-2550397 None:intergenic 45.0%
GTGTTCCTAGTCCAATGAAG+AGG + Chr2:2550370-2550389 MsG0280006479.01.T01:CDS 45.0%
TGAAAGGCAAGTTGTCGATG+CGG + Chr2:2550119-2550138 MsG0280006479.01.T01:CDS 45.0%
! AAGCAAGAAGAGAAAGCGTG+AGG - Chr2:2549486-2549505 None:intergenic 45.0%
!! CTGTGGTGGATCATCCTATT+TGG + Chr2:2549653-2549672 MsG0280006479.01.T01:CDS 45.0%
!! GCCTAGGAGATCTGTTTCTA+TGG + Chr2:2550155-2550174 MsG0280006479.01.T01:CDS 45.0%
!! TGTTGTTGTGATGATGGTGG+TGG - Chr2:2549433-2549452 None:intergenic 45.0%
GACTCAACCCTAGCAACTGT+AGG - Chr2:2549919-2549938 None:intergenic 50.0%
GCATCAACATGGATCTGTGG+TGG + Chr2:2549639-2549658 MsG0280006479.01.T01:CDS 50.0%
! TCGATGCGGTTAGTGTCGTT+CGG + Chr2:2550133-2550152 MsG0280006479.01.T01:CDS 50.0%
!! TGTTGTGATGATGGTGGTGG+TGG - Chr2:2549430-2549449 None:intergenic 50.0%
!! GATGATGGTGGTGGTGGTGA+TGG - Chr2:2549424-2549443 None:intergenic 55.0%
! CGGTTAGTGTCGTTCGGCCT+AGG + Chr2:2550139-2550158 MsG0280006479.01.T01:CDS 60.0%
!! GATGGTGGTGGTGGTGATGG+AGG - Chr2:2549421-2549440 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 2549280 2550476 2549280 ID=MsG0280006479.01;Name=MsG0280006479.01
Chr2 mRNA 2549280 2550476 2549280 ID=MsG0280006479.01.T01;Parent=MsG0280006479.01;Name=MsG0280006479.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|398
Chr2 exon 2549280 2550476 2549280 ID=MsG0280006479.01.T01:exon:461;Parent=MsG0280006479.01.T01
Chr2 CDS 2549280 2550476 2549280 ID=MsG0280006479.01.T01:cds;Parent=MsG0280006479.01.T01
Gene Sequence

>MsG0280006479.01.T01

ATGAGGTTGCAATTGCATCATAGAAAATTGATGGCAAAGTTATGTGAAACAATATGTCACAGAGATTGTTCATCATACAAAAATTGCACTGTTTGCTTCAAATTCTGTATAAACAGTCCACAAATCCCTTATTACTATCCTCCATCACCACCACCACCATCATCACAACAACAAGACCACCACAAAATCAACAATTACTTCATCCTCACGCTTTCTCTTCTTGCTTTTGCTTTTTTTCTTGTTTGTGTTCGTGCAATTTATATCAGTTTCAGGTCAAGAAGAAGAAGAAGCAGCTTAAGGGCACAACCATCATCAACAGCTCAACAAAATGATAGGAATTTTGATGATGAAGAACAACAGCATCAACATGGATCTGTGGTGGATCATCCTATTTGGTATATTCGAACCTTAGGTCTTCATCAATCTGTTATCAATGCAATTAGTGTTTGTAAGTATAAGAGAGGTGAAGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGGTCACATACTAATTGTCCTATGTGTAGGGCTCCAATTGTTAATAACCCTACAGTTGCTAGGGTTGAGTCTTTGGAGTCTGTTATTGTTGTTGATGATTCTAGTTCAAGTTCATTGGAACATACACAAATTGATGTTTCTGATGAAAATAGTGGTGAAAGTGAAACCAATTTAGGGTTTGAAGATAGTGTTTTTGATTCTGAATTGAGGAATATGGAAGAAAATGAAGGGCATTTTGAGGTATGTGAAAATGAAAGGCAAGTTGTCGATGCGGTTAGTGTCGTTCGGCCTAGGAGATCTGTTTCTATGGATGATTCTTTTGTTGCAAATAACAATCTTGCTCTTGCTACTGTTCTATCAATTGAGTCTAATATTATTGGTGATTCAAGTAAAATGAGTTTCAATGATGATGCTATTTCAAAGGTTAATGGAAATGAGAATTTGGCAACTACTTCCAAAGGAAGTAGTAGCTTTTCTTTTAGGCCAACAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGGTCAAGTTCGTACAATGGGAAATTTCTTCTGTCTTGGTTTAGCAGCAATCAGAAGAAGCCAAATGATATTTTCAGAAACTTATGA

Protein sequence

>MsG0280006479.01.T01

MRLQLHHRKLMAKLCETICHRDCSSYKNCTVCFKFCINSPQIPYYYPPSPPPPSSQQQDHHKINNYFILTLSLLAFAFFLVCVRAIYISFRSRRRRSSLRAQPSSTAQQNDRNFDDEEQQHQHGSVVDHPIWYIRTLGLHQSVINAISVCKYKRGEGLIEGTECSVCLSEFEEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVNNPTVARVESLESVIVVDDSSSSSLEHTQIDVSDENSGESETNLGFEDSVFDSELRNMEENEGHFEVCENERQVVDAVSVVRPRRSVSMDDSFVANNNLALATVLSIESNIIGDSSKMSFNDDAISKVNGNENLATTSKGSSSFSFRPTRYLQGVPSPMKRSSSYNGKFLLSWFSSNQKKPNDIFRNL*