AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026068.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026068.01.T01 MTR_5g038870 59.829 117 18 3 51 138 129 245 1.72e-34 124
MsG0580026068.01.T01 MTR_5g038870 97.143 35 0 1 1 35 1 34 9.91e-13 64.3
MsG0580026068.01.T01 MTR_4g108270 54.237 118 24 4 51 138 138 255 8.31e-29 108
MsG0580026068.01.T01 MTR_5g088400 48.276 116 31 3 52 138 124 239 3.32e-25 97.4
MsG0580026068.01.T01 MTR_3g040800 46.552 116 33 4 52 138 162 277 6.18e-25 98.6
MsG0580026068.01.T01 MTR_5g088400 48.276 116 31 3 52 138 124 239 1.43e-24 97.4
MsG0580026068.01.T01 MTR_5g079840 44.094 127 40 3 43 138 120 246 2.91e-24 96.7
MsG0580026068.01.T01 MTR_4g115120 41.781 146 56 4 22 138 134 279 4.96e-24 96.3
MsG0580026068.01.T01 MTR_7g074610 47.009 117 33 3 51 138 141 257 6.63e-24 95.9
MsG0580026068.01.T01 MTR_7g061660 42.857 119 37 2 51 138 126 244 1.08e-23 95.1
MsG0580026068.01.T01 MTR_8g100155 46.552 116 33 3 52 138 122 237 1.82e-23 94.0
MsG0580026068.01.T01 MTR_3g067795 42.857 119 37 3 51 138 49 167 3.86e-23 92.4
MsG0580026068.01.T01 MTR_6g011570 43.590 117 36 2 52 138 121 237 4.47e-23 93.6
MsG0580026068.01.T01 MTR_3g067795 42.857 119 37 3 51 138 49 167 4.85e-23 92.4
MsG0580026068.01.T01 MTR_3g067795 42.857 119 37 3 51 138 129 247 7.41e-23 92.4
MsG0580026068.01.T01 MTR_3g067795 42.857 119 37 3 51 138 129 247 8.50e-23 92.4
MsG0580026068.01.T01 MTR_2g096950 45.378 119 32 4 52 138 128 245 2.19e-22 91.3
MsG0580026068.01.T01 MTR_8g469230 39.189 148 60 4 21 138 154 301 3.89e-22 91.3
MsG0580026068.01.T01 MTR_3g462840 42.373 118 38 3 51 138 117 234 6.29e-22 90.5
MsG0580026068.01.T01 MTR_5g038450 38.514 148 61 4 21 138 158 305 1.26e-21 89.7
MsG0580026068.01.T01 MTR_4g125260 43.590 117 37 2 51 138 135 251 8.44e-21 87.4
MsG0580026068.01.T01 MTR_2g041960 44.444 117 36 3 51 138 129 245 1.07e-20 87.0
MsG0580026068.01.T01 MTR_5g026370 44.348 115 36 3 52 138 143 257 1.27e-20 86.7
MsG0580026068.01.T01 MTR_6g011330 43.103 116 37 3 52 138 187 302 2.12e-20 86.3
MsG0580026068.01.T01 MTR_8g088410 42.735 117 38 3 51 138 123 239 3.66e-20 85.1
MsG0580026068.01.T01 MTR_7g009320 35.811 148 65 4 21 138 145 292 1.14e-19 84.0
MsG0580026068.01.T01 MTR_2g096970 40.678 118 37 3 52 137 115 231 2.16e-19 82.8
MsG0580026068.01.T01 MTR_1g015020 40.517 116 40 2 52 138 133 248 2.62e-19 82.8
MsG0580026068.01.T01 MTR_8g073560 39.167 120 42 3 50 138 144 263 3.22e-19 81.6
MsG0580026068.01.T01 MTR_3g115490 40.171 117 42 3 50 138 134 250 3.27e-19 82.4
MsG0580026068.01.T01 MTR_4g063930 37.107 159 63 4 11 138 193 345 4.46e-19 82.4
MsG0580026068.01.T01 MTR_4g063935 44.444 126 39 4 43 137 138 263 5.64e-19 82.0
MsG0580026068.01.T01 MTR_4g063935 44.444 126 39 4 43 137 158 283 6.52e-19 82.0
MsG0580026068.01.T01 MTR_8g073560 39.167 120 42 3 50 138 130 249 7.49e-19 81.6
MsG0580026068.01.T01 MTR_5g023980 37.500 120 44 3 50 138 143 262 1.23e-18 79.7
MsG0580026068.01.T01 MTR_8g020920 40.517 116 40 2 52 138 130 245 1.54e-18 80.9
MsG0580026068.01.T01 MTR_5g023980 37.500 120 44 3 50 138 129 248 2.92e-18 79.7
MsG0580026068.01.T01 MTR_3g105320 40.870 115 39 3 52 137 133 247 3.11e-18 79.7
MsG0580026068.01.T01 MTR_2g095880 39.683 126 32 3 51 138 135 254 5.98e-18 78.6
MsG0580026068.01.T01 MTR_2g095880 39.683 126 32 3 51 138 135 254 6.64e-18 79.0
MsG0580026068.01.T01 MTR_5g092120 39.200 125 32 3 52 138 116 234 1.10e-17 78.2
MsG0580026068.01.T01 MTR_4g063940 39.831 118 40 2 52 138 149 266 1.17e-17 78.2
MsG0580026068.01.T01 MTR_2g019990 39.130 138 40 4 39 138 121 252 1.41e-17 78.2
MsG0580026068.01.T01 MTR_4g131900 36.957 138 43 3 39 138 133 264 1.58e-17 77.8
MsG0580026068.01.T01 MTR_5g099130 35.714 154 60 5 15 137 114 259 1.80e-17 77.4
MsG0580026068.01.T01 MTR_2g019990 39.669 121 29 3 56 138 2 116 1.84e-17 77.4
MsG0580026068.01.T01 MTR_4g126970 40.000 120 41 3 50 138 173 292 2.26e-17 77.4
MsG0580026068.01.T01 MTR_7g100500 36.232 138 44 3 39 138 105 236 2.53e-17 77.0
MsG0580026068.01.T01 MTR_1g067140 36.232 138 44 3 39 138 106 237 2.67e-17 77.0
MsG0580026068.01.T01 MTR_5g099130 35.714 154 60 5 15 137 121 266 2.67e-17 77.0
MsG0580026068.01.T01 MTR_5g099130 35.714 154 60 5 15 137 125 270 3.30e-17 77.0
MsG0580026068.01.T01 MTR_3g050780 38.400 125 33 3 52 138 123 241 8.36e-17 75.9
MsG0580026068.01.T01 MTR_3g067770 40.458 131 46 6 32 131 104 233 2.27e-16 73.6
MsG0580026068.01.T01 MTR_8g073700 38.525 122 42 4 49 138 18 138 2.34e-16 73.6
MsG0580026068.01.T01 MTR_3g067770 40.458 131 46 6 32 131 104 233 3.09e-16 73.9
MsG0580026068.01.T01 MTR_3g067770 40.458 131 46 6 32 131 31 160 3.28e-16 73.2
MsG0580026068.01.T01 MTR_5g013610 36.975 119 42 4 52 137 114 232 4.74e-16 73.6
MsG0580026068.01.T01 MTR_7g083500 39.200 125 32 4 52 138 125 243 5.31e-16 73.6
MsG0580026068.01.T01 MTR_4g063945 38.983 118 41 2 52 138 144 261 1.02e-15 72.8
MsG0580026068.01.T01 MTR_4g063945 38.983 118 41 2 52 138 146 263 1.10e-15 72.8
MsG0580026068.01.T01 MTR_4g099130 37.500 120 41 4 52 137 119 238 1.13e-15 72.4
MsG0580026068.01.T01 MTR_1g117060 35.507 138 45 3 39 138 129 260 5.62e-15 70.9
MsG0580026068.01.T01 MTR_7g101800 37.190 121 42 3 51 137 135 255 3.00e-14 68.6
MsG0580026068.01.T01 MTR_7g101800 37.190 121 42 3 51 137 155 275 3.00e-14 68.6
MsG0580026068.01.T01 MTR_7g101800 37.190 121 42 3 51 137 143 263 3.30e-14 68.6
MsG0580026068.01.T01 MTR_8g008820 35.252 139 44 5 39 137 113 245 8.98e-14 67.4
MsG0580026068.01.T01 MTR_2g095920 34.058 138 47 3 39 138 236 367 1.65e-13 66.6
MsG0580026068.01.T01 MTR_2g096960 34.400 125 42 3 52 138 125 247 1.79e-13 66.2
MsG0580026068.01.T01 MTR_1g020060 38.583 127 33 5 51 138 92 212 2.60e-13 65.9
MsG0580026068.01.T01 MTR_4g063950 35.537 121 43 3 52 137 137 257 4.00e-13 65.5
MsG0580026068.01.T01 MTR_3g067775 46.575 73 19 2 52 104 115 187 4.53e-13 64.7
MsG0580026068.01.T01 MTR_8g074920 33.871 124 45 3 50 138 119 240 1.63e-12 63.5
MsG0580026068.01.T01 MTR_4g118855 34.400 125 39 4 51 138 116 234 1.83e-12 63.5
MsG0580026068.01.T01 MTR_4g069970 33.058 121 48 4 50 138 182 301 2.53e-11 60.1
MsG0580026068.01.T01 MTR_4g069970 33.884 121 47 5 50 138 182 301 3.64e-11 59.7
MsG0580026068.01.T01 MTR_4g069970 33.884 121 47 5 50 138 182 301 4.07e-11 59.7
MsG0580026068.01.T01 MTR_2g075250 33.600 125 38 5 52 138 710 827 4.55e-11 59.7
MsG0580026068.01.T01 MTR_2g075250 33.600 125 38 5 52 138 615 732 5.26e-11 59.3
MsG0580026068.01.T01 MTR_7g073660 34.746 118 47 3 50 137 584 701 5.36e-11 59.3
MsG0580026068.01.T01 MTR_2g067980 33.913 115 48 3 39 125 775 889 5.58e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026068.01.T01 AT2G02800 54.701 117 24 3 51 138 136 252 1.56e-30 113
MsG0580026068.01.T01 AT2G02800 54.701 117 24 3 51 138 136 252 1.56e-30 113
MsG0580026068.01.T01 AT1G69790 51.240 121 20 3 51 138 126 240 4.99e-28 106
MsG0580026068.01.T01 AT1G69790 51.240 121 20 3 51 138 137 251 5.65e-28 106
MsG0580026068.01.T01 AT1G14370 51.282 117 28 3 51 138 139 255 3.52e-27 104
MsG0580026068.01.T01 AT1G26970 50.435 115 29 3 52 138 22 136 3.06e-25 97.8
MsG0580026068.01.T01 AT1G26970 50.435 115 29 3 52 138 137 251 1.04e-24 97.8
MsG0580026068.01.T01 AT5G01020 47.863 117 32 3 51 138 119 235 3.45e-24 96.3
MsG0580026068.01.T01 AT1G74490 48.276 116 31 3 52 138 139 254 3.52e-24 96.3
MsG0580026068.01.T01 AT2G28930 44.915 118 34 2 52 138 123 240 7.94e-24 95.5
MsG0580026068.01.T01 AT2G28930 44.915 118 34 2 52 138 126 243 8.71e-24 95.5
MsG0580026068.01.T01 AT5G02290 44.538 119 35 3 51 138 121 239 4.55e-23 93.2
MsG0580026068.01.T01 AT5G02290 44.538 119 35 3 51 138 121 239 4.55e-23 93.2
MsG0580026068.01.T01 AT2G28930 44.915 118 34 2 52 138 134 251 1.31e-22 92.0
MsG0580026068.01.T01 AT1G07570 42.500 120 38 2 50 138 4 123 5.02e-22 89.0
MsG0580026068.01.T01 AT3G55450 43.802 121 34 3 51 138 114 233 8.57e-22 89.7
MsG0580026068.01.T01 AT3G55450 43.802 121 34 3 51 138 151 270 1.08e-21 89.7
MsG0580026068.01.T01 AT1G07570 43.220 118 36 2 52 138 122 239 2.79e-21 88.2
MsG0580026068.01.T01 AT1G07570 43.220 118 36 2 52 138 122 239 2.79e-21 88.2
MsG0580026068.01.T01 AT1G07570 43.220 118 36 2 52 138 122 239 2.79e-21 88.2
MsG0580026068.01.T01 AT1G07570 43.220 118 36 2 52 138 133 250 3.54e-21 88.2
MsG0580026068.01.T01 AT2G07180 47.414 116 32 4 52 138 141 256 4.05e-21 88.2
MsG0580026068.01.T01 AT2G07180 47.414 116 32 4 52 138 141 256 4.05e-21 88.2
MsG0580026068.01.T01 AT2G17220 40.000 120 41 3 50 138 137 256 5.86e-21 87.4
MsG0580026068.01.T01 AT2G17220 40.000 120 41 3 50 138 136 255 6.98e-21 87.4
MsG0580026068.01.T01 AT5G56460 43.590 117 37 3 51 138 129 245 1.19e-20 86.7
MsG0580026068.01.T01 AT2G39660 42.017 119 38 2 51 138 120 238 1.65e-20 86.3
MsG0580026068.01.T01 AT3G01300 37.584 149 61 5 21 138 158 305 5.34e-20 85.1
MsG0580026068.01.T01 AT5G15080 36.913 149 62 5 21 138 164 311 9.28e-20 84.3
MsG0580026068.01.T01 AT1G61590 41.026 117 40 3 51 138 149 265 2.01e-19 83.2
MsG0580026068.01.T01 AT2G05940 45.299 117 35 3 51 138 137 253 3.01e-19 82.8
MsG0580026068.01.T01 AT1G20650 42.063 126 29 4 51 138 121 240 7.26e-19 81.6
MsG0580026068.01.T01 AT3G28690 35.811 148 65 4 21 138 148 295 1.71e-18 80.9
MsG0580026068.01.T01 AT3G28690 35.811 148 65 4 21 138 48 195 1.75e-18 80.5
MsG0580026068.01.T01 AT3G28690 35.811 148 65 4 21 138 97 244 1.80e-18 80.5
MsG0580026068.01.T01 AT1G76370 40.833 120 39 3 51 138 118 237 5.56e-18 79.0
MsG0580026068.01.T01 AT4G35600 39.316 117 43 3 50 138 138 254 6.77e-18 79.0
MsG0580026068.01.T01 AT4G35600 39.316 117 43 3 50 138 139 255 6.86e-18 79.0
MsG0580026068.01.T01 AT5G18610 37.121 132 51 2 39 138 115 246 4.34e-17 77.0
MsG0580026068.01.T01 AT5G18610 37.121 132 51 2 39 138 115 246 4.34e-17 77.0
MsG0580026068.01.T01 AT5G18610 37.121 132 51 2 39 138 115 246 4.34e-17 77.0
MsG0580026068.01.T01 AT5G35580 41.026 117 40 3 51 138 126 242 9.68e-17 75.9
MsG0580026068.01.T01 AT5G35580 41.026 117 40 3 51 138 138 254 1.00e-16 75.9
MsG0580026068.01.T01 AT4G17660 37.168 113 44 3 52 137 144 256 1.60e-16 75.1
MsG0580026068.01.T01 AT2G26290 38.793 116 42 3 52 138 139 254 2.49e-16 74.7
MsG0580026068.01.T01 AT1G07870 38.095 126 34 3 51 138 147 266 2.82e-16 74.3
MsG0580026068.01.T01 AT1G07870 38.095 126 34 3 51 138 147 266 3.56e-16 74.3
MsG0580026068.01.T01 AT5G02800 35.211 142 40 4 39 138 105 236 3.61e-16 73.9
MsG0580026068.01.T01 AT3G07070 34.058 138 47 3 39 138 111 242 1.79e-15 72.0
MsG0580026068.01.T01 AT3G26940 35.507 138 45 4 39 138 105 236 2.33e-15 72.0
MsG0580026068.01.T01 AT3G24790 34.783 138 46 4 39 138 79 210 3.10e-15 71.2
MsG0580026068.01.T01 AT3G24790 34.783 138 46 4 39 138 97 228 3.42e-15 71.2
MsG0580026068.01.T01 AT1G76360 38.136 118 44 3 50 138 215 332 5.59e-15 70.9
MsG0580026068.01.T01 AT2G28590 37.302 126 35 3 51 138 142 261 1.09e-14 70.1
MsG0580026068.01.T01 AT2G28590 37.302 126 35 3 51 138 142 261 1.19e-14 69.3
MsG0580026068.01.T01 AT2G39110 36.885 122 42 2 51 137 139 260 1.95e-14 69.3
MsG0580026068.01.T01 AT2G39110 36.885 122 42 2 51 137 124 245 2.11e-14 68.9
MsG0580026068.01.T01 AT5G47070 36.752 117 43 3 52 137 137 253 2.34e-14 68.9
MsG0580026068.01.T01 AT4G13190 34.091 132 55 3 39 138 14 145 2.40e-14 68.6
MsG0580026068.01.T01 AT4G13190 34.091 132 55 3 39 138 103 234 3.70e-14 67.8
MsG0580026068.01.T01 AT4G13190 34.091 132 55 3 39 138 103 234 3.86e-14 68.2
MsG0580026068.01.T01 AT3G09830 36.364 121 43 3 51 137 133 253 2.24e-13 66.2
MsG0580026068.01.T01 AT3G09830 36.364 121 43 3 51 137 133 253 2.24e-13 66.2
MsG0580026068.01.T01 AT3G09830 36.364 121 43 3 51 137 133 253 2.24e-13 66.2
MsG0580026068.01.T01 AT2G28940 34.426 122 45 3 51 137 34 155 5.87e-13 64.7
MsG0580026068.01.T01 AT1G24030 32.231 121 50 3 50 138 107 227 1.37e-12 63.2
MsG0580026068.01.T01 AT1G24030 31.967 122 49 3 50 138 16 136 1.73e-12 63.2
MsG0580026068.01.T01 AT5G03320 34.711 121 45 3 51 137 130 250 2.13e-12 63.5
MsG0580026068.01.T01 AT5G03320 34.711 121 45 3 51 137 130 250 2.13e-12 63.5
MsG0580026068.01.T01 AT3G59110 32.231 121 49 4 50 138 232 351 2.13e-12 63.5
MsG0580026068.01.T01 AT1G24030 31.967 122 49 3 50 138 107 227 2.18e-12 63.2
MsG0580026068.01.T01 AT1G24030 31.967 122 49 3 50 138 107 227 2.22e-12 62.8
MsG0580026068.01.T01 AT1G24030 31.967 122 49 3 50 138 53 173 2.24e-12 63.2
MsG0580026068.01.T01 AT1G24030 31.967 122 49 3 50 138 121 241 2.45e-12 63.2
MsG0580026068.01.T01 AT2G20300 36.842 114 44 3 52 138 393 505 2.78e-12 63.2
MsG0580026068.01.T01 AT2G28940 34.711 121 44 3 52 137 154 274 1.12e-11 61.2
MsG0580026068.01.T01 AT3G09010 34.167 120 46 4 51 138 89 207 1.40e-11 60.8
MsG0580026068.01.T01 AT3G09010 34.167 120 46 4 51 138 89 207 2.16e-11 60.5
MsG0580026068.01.T01 AT3G51550 34.746 118 47 3 50 137 579 696 4.28e-11 59.7

Find 29 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTAAACTCTCCGATTT+TGG 0.175948 5:-30120512 MsG0580026068.01.T01:CDS
CCTAATCTAGTCAAATTAAT+TGG 0.222377 5:-30120978 MsG0580026068.01.T01:CDS
CCAATTAATTTGACTAGATT+AGG 0.314110 5:+30120978 None:intergenic
CGCTTTAGCCAAGCCAAAAT+CGG 0.392525 5:+30120499 None:intergenic
CCACCACACAAAATTCCCTT+TGG 0.404431 5:-30123005 MsG0580026068.01.T01:five_prime_UTR
CAAAGCTCTAGATCCACTTC+TGG 0.436963 5:-30122832 MsG0580026068.01.T01:intron
GGAATTGTTAAATAACTAGA+AGG 0.437879 5:+30121680 None:intergenic
CAGACTGAGGTTAACTACCT+TGG 0.444843 5:-30121014 MsG0580026068.01.T01:CDS
CAAATTAATTGGTTACTGCT+TGG 0.455176 5:-30120967 MsG0580026068.01.T01:CDS
TGGAAGGAGAGAACAGGCTT+TGG 0.475567 5:-30120947 MsG0580026068.01.T01:intron
TTAATTGGTTACTGCTTGGA+AGG 0.477615 5:-30120963 MsG0580026068.01.T01:CDS
AATTTAGCACTTACCAGAAG+TGG 0.477679 5:+30122819 None:intergenic
TATGACCAAGACAGTGGTTG+TGG 0.501070 5:+30120743 None:intergenic
TTGGCTAAAGCGGGTCCTAC+CGG 0.506837 5:-30120488 MsG0580026068.01.T01:CDS
TGTACTTATAACAGTTGAAG+TGG 0.514706 5:-30122942 MsG0580026068.01.T01:five_prime_UTR
GAGGACCACAACCACTGTCT+TGG 0.523028 5:-30120748 MsG0580026068.01.T01:CDS
AGAATTGTGTCAGAGACTGA+TGG 0.536925 5:-30122893 MsG0580026068.01.T01:exon
ACTGCTTGGAAGGAGAGAAC+AGG 0.538825 5:-30120953 MsG0580026068.01.T01:CDS
GAATTGTGTCAGAGACTGAT+GGG 0.568440 5:-30122892 MsG0580026068.01.T01:exon
TTAATTTGACTAGATTAGGA+TGG 0.573948 5:+30120982 None:intergenic
GTCATAATGAAAGTAGCTAT+CGG 0.580199 5:-30120726 MsG0580026068.01.T01:CDS
TCACCCTCAGACCTTGGTGT+AGG 0.589887 5:+30121622 None:intergenic
GTAGCTATCGGTGCTGCTAG+AGG 0.609289 5:-30120714 MsG0580026068.01.T01:CDS
TAGGATGGTGAAGTTGTCCA+AGG 0.636970 5:+30120997 None:intergenic
TTTCATTATGACCAAGACAG+TGG 0.655402 5:+30120737 None:intergenic
TGGTGTAGGAAGAAGACTTG+AGG 0.665674 5:+30121636 None:intergenic
ACATGAGTTCTATCACCGGT+AGG 0.679055 5:+30120473 None:intergenic
AGACACATGAGTTCTATCAC+CGG 0.682910 5:+30120469 None:intergenic
CAAGTCTTCTTCCTACACCA+AGG 0.688080 5:-30121633 MsG0580026068.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTCTTTCTAAAATT+CGG + Chr5:30120767-30120786 None:intergenic 10.0%
!!! TTTGATTTTTTTTATTTGTT+TGG - Chr5:30121005-30121024 MsG0580026068.01.T01:CDS 10.0%
!! AAAAAAAAATACCCAAAAAA+AGG + Chr5:30121100-30121119 None:intergenic 15.0%
!! AAATAATTCAATTCTCAAAA+TGG + Chr5:30121519-30121538 None:intergenic 15.0%
!! AGTTTGAATTGTATTAATTT+GGG - Chr5:30121142-30121161 MsG0580026068.01.T01:intron 15.0%
!! TAGTTTGAATTGTATTAATT+TGG - Chr5:30121141-30121160 MsG0580026068.01.T01:intron 15.0%
!!! ACAATTTTTTTATTCTTCTT+TGG - Chr5:30121800-30121819 MsG0580026068.01.T01:intron 15.0%
!!! TATGTTCATGATTTTTTTTT+GGG - Chr5:30120812-30120831 MsG0580026068.01.T01:intron 15.0%
!!! TTATGTTCATGATTTTTTTT+TGG - Chr5:30120811-30120830 MsG0580026068.01.T01:intron 15.0%
!!! TTTTTTTTATTTGTTTGGTT+TGG - Chr5:30121010-30121029 MsG0580026068.01.T01:CDS 15.0%
!! AATTAAACTAAGCGAAAAAT+AGG - Chr5:30121596-30121615 MsG0580026068.01.T01:intron 20.0%
!! TATAAACTTCTTACTTATCA+TGG - Chr5:30122971-30122990 MsG0580026068.01.T01:five_prime_UTR 20.0%
!!! AACTTTGAAATAATTCAACT+CGG + Chr5:30121490-30121509 None:intergenic 20.0%
!!! AGTATTTTATCACATCAAAA+TGG - Chr5:30121563-30121582 MsG0580026068.01.T01:intron 20.0%
!!! CTTTTAAAAAAGTTGATTCT+GGG - Chr5:30121222-30121241 MsG0580026068.01.T01:intron 20.0%
!!! GTATTTTTAGAATTGAAGTT+TGG - Chr5:30121334-30121353 MsG0580026068.01.T01:intron 20.0%
!!! TAATGTCTTTCTAATGTTTT+AGG - Chr5:30121305-30121324 MsG0580026068.01.T01:intron 20.0%
!!! TTTTTATTCCAATTTTGGTT+TGG - Chr5:30120976-30120995 MsG0580026068.01.T01:CDS 20.0%
!!! TTTTTTTCCTTCATGTAATT+GGG - Chr5:30120867-30120886 MsG0580026068.01.T01:intron 20.0%
!!! TTTTTTTTCCTTCATGTAAT+TGG - Chr5:30120866-30120885 MsG0580026068.01.T01:intron 20.0%
! AAAATACCCAAAAAAAGGAA+AGG + Chr5:30121095-30121114 None:intergenic 25.0%
! AAGAGGACAATAAAATCAAT+AGG + Chr5:30120957-30120976 None:intergenic 25.0%
! CCAAAATTGGAATAAAAAAG+AGG + Chr5:30120974-30120993 None:intergenic 25.0%
! CCTAATCTAGTCAAATTAAT+TGG - Chr5:30122548-30122567 MsG0580026068.01.T01:intron 25.0%
! GGAATTGTTAAATAACTAGA+AGG + Chr5:30121849-30121868 None:intergenic 25.0%
! GTATATGAATTATGCCTAAA+GGG - Chr5:30122601-30122620 MsG0580026068.01.T01:intron 25.0%
! TCAAACATCTTAGTTAAGAA+AGG + Chr5:30122683-30122702 None:intergenic 25.0%
!! AACTTAGACATCAATTGTTT+TGG + Chr5:30122731-30122750 None:intergenic 25.0%
!! AAGACCATATATTTGTCTTT+TGG + Chr5:30122439-30122458 None:intergenic 25.0%
!! ACATACTTCTTTTCATAACA+TGG - Chr5:30121185-30121204 MsG0580026068.01.T01:intron 25.0%
!! AGACCATATATTTGTCTTTT+GGG + Chr5:30122438-30122457 None:intergenic 25.0%
!! CCAATTAATTTGACTAGATT+AGG + Chr5:30122551-30122570 None:intergenic 25.0%
!! GTTTTCTTTTATCTTCCTAA+GGG - Chr5:30121356-30121375 MsG0580026068.01.T01:intron 25.0%
!! TGCATATAAGTCTAAAATAC+TGG - Chr5:30121699-30121718 MsG0580026068.01.T01:CDS 25.0%
!! TGTGTTCATTGTAATTTTAC+AGG - Chr5:30122756-30122775 MsG0580026068.01.T01:intron 25.0%
!! TTAATTTGACTAGATTAGGA+TGG + Chr5:30122547-30122566 None:intergenic 25.0%
!! TTGGTAAGTTCTTTATTTCT+AGG - Chr5:30122146-30122165 MsG0580026068.01.T01:intron 25.0%
!!! AATGAGAATGCTTTAAGATT+GGG + Chr5:30121943-30121962 None:intergenic 25.0%
!!! ACTTTGAAATAATTCAACTC+GGG + Chr5:30121489-30121508 None:intergenic 25.0%
!!! CCTCTTTTTTATTCCAATTT+TGG - Chr5:30120971-30120990 MsG0580026068.01.T01:CDS 25.0%
!!! GCTTTTAAAAAAGTTGATTC+TGG - Chr5:30121221-30121240 MsG0580026068.01.T01:intron 25.0%
!!! TCGAGATTTTGATTTGTTAA+TGG - Chr5:30122705-30122724 MsG0580026068.01.T01:intron 25.0%
AAACCAAACCAAACCAAAAT+TGG + Chr5:30120987-30121006 None:intergenic 30.0%
ACATTAAGAACACAAGATGA+TGG + Chr5:30120792-30120811 None:intergenic 30.0%
CAAATTAATTGGTTACTGCT+TGG - Chr5:30122559-30122578 MsG0580026068.01.T01:intron 30.0%
CTTCTTACTTATCATGGATT+TGG - Chr5:30122977-30122996 MsG0580026068.01.T01:five_prime_UTR 30.0%
GATAAGTACTTCAATAGAAG+AGG + Chr5:30121281-30121300 None:intergenic 30.0%
GCAAAGAATTCAAACTATTG+AGG + Chr5:30122186-30122205 None:intergenic 30.0%
GGTATATGAATTATGCCTAA+AGG - Chr5:30122600-30122619 MsG0580026068.01.T01:intron 30.0%
GTCATAATGAAAGTAGCTAT+CGG - Chr5:30122800-30122819 MsG0580026068.01.T01:intron 30.0%
TAAGTACACAACAGAAAAAG+AGG + Chr5:30120572-30120591 None:intergenic 30.0%
TGTACTTATAACAGTTGAAG+TGG - Chr5:30120584-30120603 MsG0580026068.01.T01:intron 30.0%
TTCCCCAAAAGACAAATATA+TGG - Chr5:30122432-30122451 MsG0580026068.01.T01:intron 30.0%
TTGTGATCATTATGTTCTTG+TGG - Chr5:30120840-30120859 MsG0580026068.01.T01:intron 30.0%
! AATTCTAAACTCTCCGATTT+TGG - Chr5:30123014-30123033 MsG0580026068.01.T01:five_prime_UTR 30.0%
! ACAGTGCTTTTCTTTAGTTA+TGG + Chr5:30121672-30121691 None:intergenic 30.0%
! CTTATGGAGTATTAAGAAAC+AGG - Chr5:30121419-30121438 MsG0580026068.01.T01:intron 30.0%
! GACCATATATTTGTCTTTTG+GGG + Chr5:30122437-30122456 None:intergenic 30.0%
! GGATTTGGTCATGTTTATAA+GGG - Chr5:30122020-30122039 MsG0580026068.01.T01:intron 30.0%
! GGTTTTCTTTTATCTTCCTA+AGG - Chr5:30121355-30121374 MsG0580026068.01.T01:intron 30.0%
! GTTCAGAATTGAACTTTTGA+TGG - Chr5:30121721-30121740 MsG0580026068.01.T01:intron 30.0%
! GTTCATTGTAATTTTACAGG+AGG - Chr5:30122759-30122778 MsG0580026068.01.T01:intron 30.0%
! TCATAACATGGTGTTTCTTT+TGG - Chr5:30121197-30121216 MsG0580026068.01.T01:intron 30.0%
! TCTAAAACCCAATTACATGA+AGG + Chr5:30120877-30120896 None:intergenic 30.0%
! TGTTGCGATTATGTTTGTTA+TGG - Chr5:30121623-30121642 MsG0580026068.01.T01:intron 30.0%
! TTTTATTCTTCTTTGGCATC+AGG - Chr5:30121807-30121826 MsG0580026068.01.T01:intron 30.0%
!! CTTCTGAATTAGTCGATTTT+TGG - Chr5:30120733-30120752 MsG0580026068.01.T01:CDS 30.0%
!! GAATGAGAATGCTTTAAGAT+TGG + Chr5:30121944-30121963 None:intergenic 30.0%
!! TCTTTCTAAAATTCGGTATC+CGG + Chr5:30120760-30120779 None:intergenic 30.0%
!! TGTTTGAAGCTTTGAAATCA+CGG + Chr5:30122878-30122897 None:intergenic 30.0%
!! TTTTGATGGTTGAATGTGAA+AGG - Chr5:30121735-30121754 MsG0580026068.01.T01:intron 30.0%
!! TTTTGGCCTTTCCTTTTTTT+GGG - Chr5:30121086-30121105 MsG0580026068.01.T01:intron 30.0%
!! TTTTTGGCCTTTCCTTTTTT+TGG - Chr5:30121085-30121104 MsG0580026068.01.T01:intron 30.0%
!!! AAGCAGCTTTTTACTGATTT+TGG + Chr5:30122660-30122679 None:intergenic 30.0%
!!! ATTCCAATTTTGGTTTGGTT+TGG - Chr5:30120981-30121000 MsG0580026068.01.T01:CDS 30.0%
!!! GCACATTGTTTAGTGTTTTT+TGG - Chr5:30121069-30121088 MsG0580026068.01.T01:intron 30.0%
!!! GTTCATGATTTTTTTTTGGG+AGG - Chr5:30120815-30120834 MsG0580026068.01.T01:intron 30.0%
AACTTACCAACCACTCTTTA+TGG + Chr5:30122136-30122155 None:intergenic 35.0%
AATTTAGCACTTACCAGAAG+TGG + Chr5:30120710-30120729 None:intergenic 35.0%
ACTTCTGGTAAGTGCTAAAT+TGG - Chr5:30120709-30120728 MsG0580026068.01.T01:CDS 35.0%
GCAACTTACGTCTAAAAAGA+TGG + Chr5:30122638-30122657 None:intergenic 35.0%
GTTAAAAGACTTAAGCCTGA+AGG - Chr5:30122101-30122120 MsG0580026068.01.T01:intron 35.0%
GTTTATCTATTTGCAGACTG+AGG - Chr5:30122499-30122518 MsG0580026068.01.T01:intron 35.0%
TCCATAAGTATCCTAATCCA+TGG + Chr5:30121407-30121426 None:intergenic 35.0%
TTAATTGGTTACTGCTTGGA+AGG - Chr5:30122563-30122582 MsG0580026068.01.T01:intron 35.0%
TTATCATGGATTTGGATTGC+AGG - Chr5:30122985-30123004 MsG0580026068.01.T01:five_prime_UTR 35.0%
TTGGTCATGTTTATAAGGGA+TGG - Chr5:30122024-30122043 MsG0580026068.01.T01:intron 35.0%
TTTCATTATGACCAAGACAG+TGG + Chr5:30122792-30122811 None:intergenic 35.0%
! AAAAGCAGTGACTTTTCCAA+AGG + Chr5:30120540-30120559 None:intergenic 35.0%
! AAAGCAGTGACTTTTCCAAA+GGG + Chr5:30120539-30120558 None:intergenic 35.0%
! ACTAGAAGGAGTAGTTTTTG+AGG + Chr5:30121835-30121854 None:intergenic 35.0%
! ATGCTTTTGTCACTGTATGA+TGG + Chr5:30121870-30121889 None:intergenic 35.0%
! ATGGCGTAGAAGTATGAATT+CGG + Chr5:30122407-30122426 None:intergenic 35.0%
! CACAACTCTGATTTTAAGCA+GGG + Chr5:30122321-30122340 None:intergenic 35.0%
! CGGATTTGGTCATGTTTATA+AGG - Chr5:30122019-30122038 MsG0580026068.01.T01:intron 35.0%
! CTGATTTTAAGCAGGGTAAA+TGG + Chr5:30122314-30122333 None:intergenic 35.0%
! TTCAAACATCCTTTTAGACG+CGG - Chr5:30122890-30122909 MsG0580026068.01.T01:exon 35.0%
! TTTCCAAAGGGAATTTTGTG+TGG + Chr5:30120527-30120546 None:intergenic 35.0%
! TTTGTGTGGTGGAAGAAAAA+AGG + Chr5:30120513-30120532 None:intergenic 35.0%
!! AATCAGCACTTTAGAGCAAA+CGG - Chr5:30122231-30122250 MsG0580026068.01.T01:intron 35.0%
!! CTTTATTTCTAGGCCCATTA+GGG - Chr5:30122156-30122175 MsG0580026068.01.T01:intron 35.0%
!! GAATTAGTCGATTTTTGGAC+CGG - Chr5:30120738-30120757 MsG0580026068.01.T01:CDS 35.0%
!! TCTTTATTTCTAGGCCCATT+AGG - Chr5:30122155-30122174 MsG0580026068.01.T01:intron 35.0%
!! TGGTTAATTTGTTGACAGCA+CGG + Chr5:30121458-30121477 None:intergenic 35.0%
!! TTGGTTTGATTTGTGTAGCT+AGG - Chr5:30121029-30121048 MsG0580026068.01.T01:intron 35.0%
ACTATTGAGGTAGTCCCTAA+TGG + Chr5:30122173-30122192 None:intergenic 40.0%
AGAATTGTGTCAGAGACTGA+TGG - Chr5:30120633-30120652 MsG0580026068.01.T01:intron 40.0%
AGACACATGAGTTCTATCAC+CGG + Chr5:30123060-30123079 None:intergenic 40.0%
CAAAGTTGTAGCCATGGATT+AGG - Chr5:30121393-30121412 MsG0580026068.01.T01:intron 40.0%
CTAATCCATGGCTACAACTT+TGG + Chr5:30121395-30121414 None:intergenic 40.0%
CTATTGAGGTAGTCCCTAAT+GGG + Chr5:30122172-30122191 None:intergenic 40.0%
GAATTGTGTCAGAGACTGAT+GGG - Chr5:30120634-30120653 MsG0580026068.01.T01:intron 40.0%
GTTGTGCAATCTTGATCTCA+TGG - Chr5:30122335-30122354 MsG0580026068.01.T01:intron 40.0%
TAGAGCAAACGGATCAACAT+TGG - Chr5:30122242-30122261 MsG0580026068.01.T01:intron 40.0%
! CTTAAGCCTGAAGGTTTTCA+AGG - Chr5:30122110-30122129 MsG0580026068.01.T01:intron 40.0%
! GCACAACTCTGATTTTAAGC+AGG + Chr5:30122322-30122341 None:intergenic 40.0%
! TTATGGCCTTGAAAACCTTC+AGG + Chr5:30122119-30122138 None:intergenic 40.0%
!! GCCATGGATTAGGATACTTA+TGG - Chr5:30121403-30121422 MsG0580026068.01.T01:intron 40.0%
!! GTTTTCAAGGCCATAAAGAG+TGG - Chr5:30122123-30122142 MsG0580026068.01.T01:intron 40.0%
!! TGTCTTTTGGGGAAAAGCAA+TGG + Chr5:30122426-30122445 None:intergenic 40.0%
!!! TAAACTCTCCGATTTTGGCT+TGG - Chr5:30123019-30123038 MsG0580026068.01.T01:five_prime_UTR 40.0%
AAGATTTCACCCTCAGACCT+TGG + Chr5:30121913-30121932 None:intergenic 45.0%
ACATGAGTTCTATCACCGGT+AGG + Chr5:30123056-30123075 None:intergenic 45.0%
AGCAAAACCATTCCTGATCC+AGG + Chr5:30122081-30122100 None:intergenic 45.0%
ATGAGCTGAAAAATGCCACG+AGG - Chr5:30121964-30121983 MsG0580026068.01.T01:intron 45.0%
CAAGTCTTCTTCCTACACCA+AGG - Chr5:30121893-30121912 MsG0580026068.01.T01:intron 45.0%
CAGACTGAGGTTAACTACCT+TGG - Chr5:30122512-30122531 MsG0580026068.01.T01:intron 45.0%
CATTCACAGCTGCAAAAACC+TGG - Chr5:30122060-30122079 MsG0580026068.01.T01:intron 45.0%
CCACCACACAAAATTCCCTT+TGG - Chr5:30120521-30120540 MsG0580026068.01.T01:CDS 45.0%
CGCTTTAGCCAAGCCAAAAT+CGG + Chr5:30123030-30123049 None:intergenic 45.0%
GCAAAAACCTGGATCAGGAA+TGG - Chr5:30122071-30122090 MsG0580026068.01.T01:intron 45.0%
GGAGACAATTCAACTCCCTT+AGG + Chr5:30121374-30121393 None:intergenic 45.0%
GTGATCTTACCGCGTCTAAA+AGG + Chr5:30122902-30122921 None:intergenic 45.0%
TAGGATGGTGAAGTTGTCCA+AGG + Chr5:30122532-30122551 None:intergenic 45.0%
TATGACCAAGACAGTGGTTG+TGG + Chr5:30122786-30122805 None:intergenic 45.0%
TCAAGGCCATAAAGAGTGGT+TGG - Chr5:30122127-30122146 MsG0580026068.01.T01:intron 45.0%
TGGTGTAGGAAGAAGACTTG+AGG + Chr5:30121893-30121912 None:intergenic 45.0%
TGGTTCTCTAAGCTCCCTTT+AGG + Chr5:30122618-30122637 None:intergenic 45.0%
TGTCTCCAAAGTTGTAGCCA+TGG - Chr5:30121387-30121406 MsG0580026068.01.T01:intron 45.0%
TTGACAGCACGGATCAAACT+CGG + Chr5:30121447-30121466 None:intergenic 45.0%
TTTCGTCCCGATAGTCTTCT+AGG - Chr5:30121990-30122009 MsG0580026068.01.T01:intron 45.0%
! CCAAAGGGAATTTTGTGTGG+TGG + Chr5:30120524-30120543 None:intergenic 45.0%
!! CAAAGCTCTAGATCCACTTC+TGG - Chr5:30120694-30120713 MsG0580026068.01.T01:CDS 45.0%
!! GTGCTGATTGCGTGAATATG+CGG + Chr5:30122220-30122239 None:intergenic 45.0%
!!! CGATTTTGGCTTGGCTAAAG+CGG - Chr5:30123028-30123047 MsG0580026068.01.T01:five_prime_UTR 45.0%
!!! GATTTTGGCTTGGCTAAAGC+GGG - Chr5:30123029-30123048 MsG0580026068.01.T01:five_prime_UTR 45.0%
ACTGCTTGGAAGGAGAGAAC+AGG - Chr5:30122573-30122592 MsG0580026068.01.T01:intron 50.0%
ATCGGGACGAAAATTCCTCG+TGG + Chr5:30121982-30122001 None:intergenic 50.0%
ATTCAACTCGGGCAAATGCG+TGG + Chr5:30121478-30121497 None:intergenic 50.0%
CAGCTGCAAAAACCTGGATC+AGG - Chr5:30122066-30122085 MsG0580026068.01.T01:intron 50.0%
CCTTCGCCTAGAAGACTATC+GGG + Chr5:30121999-30122018 None:intergenic 50.0%
CTTCCTACACCAAGGTCTGA+GGG - Chr5:30121901-30121920 MsG0580026068.01.T01:intron 50.0%
GATAGTCTTCTAGGCGAAGG+CGG - Chr5:30121999-30122018 MsG0580026068.01.T01:intron 50.0%
GCCTTCGCCTAGAAGACTAT+CGG + Chr5:30122000-30122019 None:intergenic 50.0%
TCTTCCTACACCAAGGTCTG+AGG - Chr5:30121900-30121919 MsG0580026068.01.T01:intron 50.0%
TGACAGCACGGATCAAACTC+GGG + Chr5:30121446-30121465 None:intergenic 50.0%
TGGAAGGAGAGAACAGGCTT+TGG - Chr5:30122579-30122598 MsG0580026068.01.T01:intron 50.0%
CCCGATAGTCTTCTAGGCGA+AGG - Chr5:30121996-30122015 MsG0580026068.01.T01:intron 55.0%
GACAGCACGGATCAAACTCG+GGG + Chr5:30121445-30121464 None:intergenic 55.0%
GAGGACCACAACCACTGTCT+TGG - Chr5:30122778-30122797 MsG0580026068.01.T01:intron 55.0%
TTGGCTAAAGCGGGTCCTAC+CGG - Chr5:30123038-30123057 MsG0580026068.01.T01:five_prime_UTR 55.0%
! CTTCTAGGCGAAGGCGGATT+TGG - Chr5:30122005-30122024 MsG0580026068.01.T01:intron 55.0%
! TCACCCTCAGACCTTGGTGT+AGG + Chr5:30121907-30121926 None:intergenic 55.0%
!! GTAGCTATCGGTGCTGCTAG+AGG - Chr5:30122812-30122831 MsG0580026068.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 30120460 30123088 30120460 ID=MsG0580026068.01;Name=MsG0580026068.01
Chr5 mRNA 30120460 30123088 30120460 ID=MsG0580026068.01.T01;Parent=MsG0580026068.01;Name=MsG0580026068.01.T01;_AED=0.37;_eAED=0.37;_QI=192|0.4|0.5|1|0.8|0.66|6|0|138
Chr5 exon 30120460 30120541 30120460 ID=MsG0580026068.01.T01:exon:33754;Parent=MsG0580026068.01.T01
Chr5 exon 30120672 30120770 30120672 ID=MsG0580026068.01.T01:exon:33753;Parent=MsG0580026068.01.T01
Chr5 exon 30120948 30121033 30120948 ID=MsG0580026068.01.T01:exon:33752;Parent=MsG0580026068.01.T01
Chr5 exon 30121634 30121719 30121634 ID=MsG0580026068.01.T01:exon:33751;Parent=MsG0580026068.01.T01
Chr5 exon 30122833 30123088 30122833 ID=MsG0580026068.01.T01:exon:33750;Parent=MsG0580026068.01.T01
Chr5 five_prime_UTR 30122897 30123088 30122897 ID=MsG0580026068.01.T01:five_prime_utr;Parent=MsG0580026068.01.T01
Chr5 CDS 30122833 30122896 30122833 ID=MsG0580026068.01.T01:cds;Parent=MsG0580026068.01.T01
Chr5 CDS 30121634 30121719 30121634 ID=MsG0580026068.01.T01:cds;Parent=MsG0580026068.01.T01
Chr5 CDS 30120948 30121033 30120948 ID=MsG0580026068.01.T01:cds;Parent=MsG0580026068.01.T01
Chr5 CDS 30120672 30120770 30120672 ID=MsG0580026068.01.T01:cds;Parent=MsG0580026068.01.T01
Chr5 CDS 30120460 30120541 30120460 ID=MsG0580026068.01.T01:cds;Parent=MsG0580026068.01.T01
Gene Sequence

>MsG0580026068.01.T01

ATGGGTAATTGTCTTGATTCTTCTGCTAAAGTTGATGCTGCTCAAAGCTCTAGATCCACTTCTGGAACCTCAAAAACTACTCCTTCTAGTTATTTAACAATTCCATCATACAGTGACAAAAGCATCCTCAAGTCTTCTTCCTACACCAAGACTGAGGTTAACTACCTTGGACAACTTCACCATCCTAATCTAGTCAAATTAATTGGTTACTGCTTGGAAGGAGAGAACAGGCTTTGGAGGACCACAACCACTGTCTTGGTCATAATGAAAGTAGCTATCGGTGCTGCTAGAGGTCTCTCGTTTCTTTCTTCAATGCAAAATCTCAAGTCTATACCGAGTTTTAATTCTAAACTCTCCGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGTGATAGAACTCATGTGTCTACTCAGTAG

Protein sequence

>MsG0580026068.01.T01

MGNCLDSSAKVDAAQSSRSTSGTSKTTPSSYLTIPSYSDKSILKSSSYTKTEVNYLGQLHHPNLVKLIGYCLEGENRLWRTTTTVLVIMKVAIGAARGLSFLSSMQNLKSIPSFNSKLSDFGLAKAGPTGDRTHVSTQ*