AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001922.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001922.01.T01 MTR_1g046580 97.403 539 14 0 1 539 1 539 0.0 1083
MsG0180001922.01.T01 MTR_7g115580 57.377 549 202 10 5 539 29 559 0.0 596
MsG0180001922.01.T01 MTR_1g080310 54.545 539 200 9 5 539 3 500 0.0 553
MsG0180001922.01.T01 MTR_1g046930 61.960 347 130 2 1 346 1 346 1.62e-148 439
MsG0180001922.01.T01 MTR_1g046930 71.212 66 19 0 474 539 401 466 5.33e-24 106
MsG0180001922.01.T01 MTR_2g023450 43.609 532 216 7 8 539 19 466 9.16e-142 422
MsG0180001922.01.T01 MTR_1g115930 57.407 54 23 0 56 109 33 86 1.48e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001922.01.T01 AT1G04780 72.943 547 129 9 4 539 6 544 0.0 794
MsG0180001922.01.T01 AT3G24210 63.704 540 155 9 1 539 1 500 0.0 662
MsG0180001922.01.T01 AT3G04470 55.160 562 176 9 5 539 3 515 0.0 597
MsG0180001922.01.T01 AT1G62050 44.220 545 231 9 9 539 18 503 8.54e-145 431
MsG0180001922.01.T01 AT1G11740 52.318 302 141 1 9 310 17 315 1.15e-106 333
MsG0180001922.01.T01 AT1G11740 70.492 61 18 0 479 539 364 424 9.74e-20 93.6

Find 119 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACTTGGCTGTTAAATT+AGG 0.055054 1:-29415670 MsG0180001922.01.T01:CDS
TTCACTTGGCTGTTAAATTA+GGG 0.214370 1:-29415669 MsG0180001922.01.T01:CDS
CTTCAGACACTTACAAGATT+TGG 0.232931 1:-29415375 MsG0180001922.01.T01:CDS
TGAAAAGGTGAGCGATTTAT+TGG 0.236609 1:-29414624 MsG0180001922.01.T01:CDS
GGAAAAGGGGTGCGAATCTA+AGG 0.266382 1:-29415354 MsG0180001922.01.T01:CDS
TGTCTAAAACAAATATATTT+AGG 0.297109 1:-29415123 MsG0180001922.01.T01:CDS
AAGGATTGAGGCCTATTCTT+TGG 0.316054 1:-29414436 MsG0180001922.01.T01:CDS
GGGATTGATGTTGCAAAGTT+TGG 0.320650 1:-29415883 MsG0180001922.01.T01:CDS
GAGCAAGCACTGACCTTAAC+AGG 0.333513 1:+29414287 None:intergenic
CAATTGCCTTCTTTCATCTT+CGG 0.347048 1:+29414877 None:intergenic
CTGTGATACCTTTCATTTCA+AGG 0.359358 1:-29415405 MsG0180001922.01.T01:CDS
GCATTATCAGCCTCTGGCTT+GGG 0.378131 1:-29415518 MsG0180001922.01.T01:CDS
GCTGAAATGCTTATGGTTGT+TGG 0.381013 1:-29415634 MsG0180001922.01.T01:CDS
AGAATTTACAGAAGAAGCTT+TGG 0.383345 1:+29414511 None:intergenic
TCTACGCAAAGAGAACTTCT+TGG 0.388331 1:+29414647 None:intergenic
CAATCTCTGCTGTGATTGAT+AGG 0.391403 1:-29415720 MsG0180001922.01.T01:CDS
CTACCGTTACCATCTTCAAT+AGG 0.394559 1:+29414767 None:intergenic
GAAAAGGTGAGCGATTTATT+GGG 0.399396 1:-29414623 MsG0180001922.01.T01:CDS
ATAAAATCTAGAGGAGTTCC+TGG 0.407650 1:-29414977 MsG0180001922.01.T01:CDS
TGGTCATAGTCCTGTTCATA+AGG 0.411108 1:-29415863 MsG0180001922.01.T01:CDS
AGGATTATGGTGAGCTTAAG+AGG 0.411282 1:-29415828 MsG0180001922.01.T01:CDS
CACTTACAAGATTTGGAAAA+GGG 0.421955 1:-29415368 MsG0180001922.01.T01:CDS
AGGGCTGACATGACTTTGGC+TGG 0.422895 1:-29415334 MsG0180001922.01.T01:CDS
TTATGGTTGTTGGTGCTGAT+TGG 0.422928 1:-29415624 MsG0180001922.01.T01:CDS
TTCTCTTTGCGTAGATGAAA+AGG 0.429956 1:-29414639 MsG0180001922.01.T01:CDS
GTGTAGAAGGTTGCCTCGTT+TGG 0.430443 1:-29415488 MsG0180001922.01.T01:CDS
AAACAGAAATGGTAGGATCT+TGG 0.430531 1:-29415039 MsG0180001922.01.T01:CDS
GGTGAGCTTAAGAGGATACT+TGG 0.431434 1:-29415820 MsG0180001922.01.T01:CDS
CTTGGTGATGGTTCAGAGGA+TGG 0.433039 1:-29415265 MsG0180001922.01.T01:CDS
AGCCTCTGGCTTGGGCGAAA+TGG 0.434814 1:-29415510 MsG0180001922.01.T01:CDS
TATTAAGCATTATCAGCCTC+TGG 0.435561 1:-29415524 MsG0180001922.01.T01:CDS
TTGTGCTGTTTAGGTATGGC+AGG 0.436450 1:-29415904 None:intergenic
AAAATCACAGCCTTATGAAC+AGG 0.440620 1:+29415853 None:intergenic
CGAAGATGAAAGAAGGCAAT+TGG 0.443916 1:-29414876 MsG0180001922.01.T01:CDS
ACACTTACAAGATTTGGAAA+AGG 0.454221 1:-29415369 MsG0180001922.01.T01:CDS
GGTTTAATCTGATTATTTGA+AGG 0.456077 1:+29414593 None:intergenic
AGAGACATTCCTATTGAAGA+TGG 0.456127 1:-29414776 MsG0180001922.01.T01:CDS
ATAATGCTTAATAATGATCT+TGG 0.457513 1:+29415534 None:intergenic
TCAGTTGACTTGGAGGCGCC+AGG 0.458205 1:-29415065 MsG0180001922.01.T01:CDS
GAAAATAAGCAGGAAAAGAA+AGG 0.458780 1:-29414734 MsG0180001922.01.T01:CDS
AGCATTATCAGCCTCTGGCT+TGG 0.461466 1:-29415519 MsG0180001922.01.T01:CDS
ATCGTTAAGTTCTTCACTCT+CGG 0.461882 1:+29414907 None:intergenic
TGAGATCATGCAGAGTGATC+CGG 0.463016 1:+29415231 None:intergenic
TTTGCAACAATGTCAAGTAA+TGG 0.466040 1:+29414374 None:intergenic
AGTGGCTGCTGAAATGCTTA+TGG 0.466309 1:-29415641 MsG0180001922.01.T01:CDS
AGAAAGGATGGTTTGGTGGA+TGG 0.466730 1:-29414718 MsG0180001922.01.T01:CDS
ATTGGAGGATGCACTTAAGC+TGG 0.468456 1:-29414858 MsG0180001922.01.T01:CDS
GATGGTAACGGTAGCAATAG+TGG 0.470448 1:-29414758 MsG0180001922.01.T01:CDS
CAGGAAAAGAAAGGATGGTT+TGG 0.470506 1:-29414725 MsG0180001922.01.T01:CDS
ACTTACAACAAAACTTCCAA+TGG 0.475435 1:-29414318 MsG0180001922.01.T01:CDS
ATGACTTTGGCTGGTTTCGA+CGG 0.483089 1:-29415325 MsG0180001922.01.T01:CDS
CATGATCTCACACAAGGAAA+AGG 0.485210 1:-29415218 MsG0180001922.01.T01:CDS
CGTGAAAATGAATATAAGAA+AGG 0.486287 1:-29414455 MsG0180001922.01.T01:CDS
ATAGGAATGTCTCTAAAGCT+TGG 0.492744 1:+29414785 None:intergenic
CTTACAACAAAACTTCCAAT+GGG 0.493342 1:-29414317 MsG0180001922.01.T01:CDS
CTTGGGCGAAATGGTGTAGA+AGG 0.495564 1:-29415501 MsG0180001922.01.T01:CDS
TTCTGTTGAGGTTGTTGTGA+GGG 0.502579 1:-29414561 MsG0180001922.01.T01:CDS
TCTAAGGGCTGACATGACTT+TGG 0.515499 1:-29415338 MsG0180001922.01.T01:CDS
TTGGTGATGGTTCAGAGGAT+GGG 0.516406 1:-29415264 MsG0180001922.01.T01:CDS
GGGTGAGATTCGTACGGAAG+CGG 0.516999 1:-29415773 MsG0180001922.01.T01:CDS
GTGAGCTTAAGAGGATACTT+GGG 0.519970 1:-29415819 MsG0180001922.01.T01:CDS
TTTACCTAAGCTGTGTAATG+TGG 0.520667 1:-29415794 MsG0180001922.01.T01:CDS
GCCTGGTATTGATGTTACTC+AGG 0.530031 1:-29415101 MsG0180001922.01.T01:CDS
CTGAACAATGATAGTGATGA+GGG 0.531253 1:-29414824 MsG0180001922.01.T01:CDS
TCATCGTCTGTCATAGCTCC+AGG 0.531703 1:+29414959 None:intergenic
AAAACAAATATATTTAGGCC+TGG 0.531734 1:-29415118 MsG0180001922.01.T01:CDS
TCATGCAGAGTGATCCGGGC+TGG 0.533564 1:+29415236 None:intergenic
TGAAGAGGAGTATCACGATT+CGG 0.534315 1:+29415688 None:intergenic
TTTGGCGAAAGCCAAAGAAT+AGG 0.538222 1:+29414425 None:intergenic
AGCAGAAGTCGTCATAAAGA+TGG 0.538908 1:-29414482 MsG0180001922.01.T01:CDS
ACCTCAACAGAATGTCTCCC+TGG 0.545970 1:+29414572 None:intergenic
TTAACAGGAAAAGTTCCCAT+TGG 0.546615 1:+29414302 None:intergenic
GAGATCATGCAGAGTGATCC+GGG 0.550659 1:+29415232 None:intergenic
GCGCCAGGAGAAAACAGAAA+TGG 0.553288 1:-29415050 MsG0180001922.01.T01:CDS
CAAATCTTGTAAGTGTCTGA+AGG 0.555543 1:+29415376 None:intergenic
GGTAGGATCTTGGAAAGCTA+AGG 0.558300 1:-29415029 MsG0180001922.01.T01:CDS
TGTGCTGTTTAGGTATGGCA+GGG 0.560479 1:-29415903 None:intergenic
GAAAAGAAAGGATGGTTTGG+TGG 0.562638 1:-29414722 MsG0180001922.01.T01:CDS
ATAAGCAGGAAAAGAAAGGA+TGG 0.566965 1:-29414730 MsG0180001922.01.T01:CDS
AGATGAAAGAAGGCAATTGG+AGG 0.568053 1:-29414873 MsG0180001922.01.T01:CDS
TTGTGAGGGGCGATGAGCAA+CGG 0.572804 1:-29414547 MsG0180001922.01.T01:CDS
TCACTTGGCTGTTAAATTAG+GGG 0.574791 1:-29415668 MsG0180001922.01.T01:CDS
TCAAATAATCAGATTAAACC+AGG 0.576252 1:-29414590 MsG0180001922.01.T01:CDS
TCACCCACATTACACAGCTT+AGG 0.579319 1:+29415790 None:intergenic
CGCATCGTCGCTACCAAACG+AGG 0.579484 1:+29415475 None:intergenic
TGGAGTTTGCAGAATGAACA+AGG 0.585411 1:-29415604 MsG0180001922.01.T01:CDS
CAATAGTGGAGAAAATAAGC+AGG 0.586148 1:-29414744 MsG0180001922.01.T01:CDS
TCGTGATACTCCTCTTCACT+TGG 0.594632 1:-29415683 MsG0180001922.01.T01:CDS
CACCATTTCGCCCAAGCCAG+AGG 0.595905 1:+29415508 None:intergenic
GGTGCAATCCTTGAAATGAA+AGG 0.596454 1:+29415397 None:intergenic
TCTGTTGAGGTTGTTGTGAG+GGG 0.602480 1:-29414560 MsG0180001922.01.T01:CDS
AATTTAACAGCCAAGTGAAG+AGG 0.606406 1:+29415673 None:intergenic
ACGCAAAGAGAACTTCTTGG+TGG 0.607111 1:+29414650 None:intergenic
ATTCTGTTGAGGTTGTTGTG+AGG 0.608833 1:-29414562 MsG0180001922.01.T01:CDS
ATGAATATAAGAAAGGATTG+AGG 0.612683 1:-29414448 MsG0180001922.01.T01:CDS
GTTGTAAGTATAAAATCTAG+AGG 0.612791 1:-29414986 MsG0180001922.01.T01:CDS
ACCAGGGAGACATTCTGTTG+AGG 0.613862 1:-29414573 MsG0180001922.01.T01:CDS
GAAAAGGGGTGCGAATCTAA+GGG 0.614309 1:-29415353 MsG0180001922.01.T01:CDS
CTCGTTTGGTAGCGACGATG+CGG 0.615725 1:-29415474 MsG0180001922.01.T01:CDS
ACTGAACAATGATAGTGATG+AGG 0.620972 1:-29414825 MsG0180001922.01.T01:CDS
TTACCTAAGCTGTGTAATGT+GGG 0.623380 1:-29415793 MsG0180001922.01.T01:CDS
GAGGATGGGAAAGTCCAGCC+CGG 0.628594 1:-29415250 MsG0180001922.01.T01:CDS
GTTTGGTAGCGACGATGCGG+AGG 0.629098 1:-29415471 MsG0180001922.01.T01:CDS
GCCTGAGTAACATCAATACC+AGG 0.632873 1:+29415100 None:intergenic
CAGGAGAAAACAGAAATGGT+AGG 0.637085 1:-29415046 MsG0180001922.01.T01:CDS
GTTTGCAGAATGAACAAGGG+TGG 0.641695 1:-29415600 MsG0180001922.01.T01:CDS
TGAGCTTAAGAGGATACTTG+GGG 0.641820 1:-29415818 MsG0180001922.01.T01:CDS
ATTCCTATTGAAGATGGTAA+CGG 0.643760 1:-29414770 MsG0180001922.01.T01:CDS
TGAGGGGCGATGAGCAACGG+AGG 0.648943 1:-29414544 MsG0180001922.01.T01:CDS
ACTTACAAGATTTGGAAAAG+GGG 0.652824 1:-29415367 MsG0180001922.01.T01:CDS
TGGCGCCTCCAAGTCAACTG+AGG 0.653180 1:+29415067 None:intergenic
GATCTCACACAAGGAAAAGG+AGG 0.660308 1:-29415215 MsG0180001922.01.T01:CDS
TGTTAAATTAGGGGATGAAG+TGG 0.665433 1:-29415659 MsG0180001922.01.T01:CDS
TAATGTGGGTGAGATTCGTA+CGG 0.669654 1:-29415779 MsG0180001922.01.T01:CDS
CAAATAATCAGATTAAACCA+GGG 0.677591 1:-29414589 MsG0180001922.01.T01:CDS
GGAGTTTGCAGAATGAACAA+GGG 0.699547 1:-29415603 MsG0180001922.01.T01:CDS
GAGCTTAAGAGGATACTTGG+GGG 0.708775 1:-29415817 MsG0180001922.01.T01:CDS
TGAACAATGATAGTGATGAG+GGG 0.712496 1:-29414823 MsG0180001922.01.T01:CDS
ACTCTGCATGATCTCACACA+AGG 0.718060 1:-29415224 MsG0180001922.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTCTAAAACAAATATATTT+AGG - Chr1:29415037-29415056 MsG0180001922.01.T01:CDS 15.0%
!! ATAATGCTTAATAATGATCT+TGG + Chr1:29414629-29414648 None:intergenic 20.0%
!!! AAGAGTTCTTCAATTTTTAA+TGG + Chr1:29415765-29415784 None:intergenic 20.0%
!!! TCAATTTTTAATGGAAAGTT+TGG + Chr1:29415756-29415775 None:intergenic 20.0%
! AAAACAAATATATTTAGGCC+TGG - Chr1:29415042-29415061 MsG0180001922.01.T01:CDS 25.0%
! ATGAATATAAGAAAGGATTG+AGG - Chr1:29415712-29415731 MsG0180001922.01.T01:CDS 25.0%
! CAAATAATCAGATTAAACCA+GGG - Chr1:29415571-29415590 MsG0180001922.01.T01:CDS 25.0%
! CGTGAAAATGAATATAAGAA+AGG - Chr1:29415705-29415724 MsG0180001922.01.T01:CDS 25.0%
! GGTTTAATCTGATTATTTGA+AGG + Chr1:29415570-29415589 None:intergenic 25.0%
! GTTGTAAGTATAAAATCTAG+AGG - Chr1:29415174-29415193 MsG0180001922.01.T01:CDS 25.0%
! TCAAATAATCAGATTAAACC+AGG - Chr1:29415570-29415589 MsG0180001922.01.T01:CDS 25.0%
ACACTTACAAGATTTGGAAA+AGG - Chr1:29414791-29414810 MsG0180001922.01.T01:CDS 30.0%
ACTTACAACAAAACTTCCAA+TGG - Chr1:29415842-29415861 MsG0180001922.01.T01:CDS 30.0%
ACTTACAAGATTTGGAAAAG+GGG - Chr1:29414793-29414812 MsG0180001922.01.T01:CDS 30.0%
AGAATTTACAGAAGAAGCTT+TGG + Chr1:29415652-29415671 None:intergenic 30.0%
ATTCCTATTGAAGATGGTAA+CGG - Chr1:29415390-29415409 MsG0180001922.01.T01:CDS 30.0%
CACTTACAAGATTTGGAAAA+GGG - Chr1:29414792-29414811 MsG0180001922.01.T01:CDS 30.0%
CTTACAACAAAACTTCCAAT+GGG - Chr1:29415843-29415862 MsG0180001922.01.T01:CDS 30.0%
GAAAATAAGCAGGAAAAGAA+AGG - Chr1:29415426-29415445 MsG0180001922.01.T01:CDS 30.0%
TTCACTTGGCTGTTAAATTA+GGG - Chr1:29414491-29414510 MsG0180001922.01.T01:CDS 30.0%
TTTGCAACAATGTCAAGTAA+TGG + Chr1:29415789-29415808 None:intergenic 30.0%
!! GATCAAAGTGTTCTTTTTCT+TGG - Chr1:29414877-29414896 MsG0180001922.01.T01:CDS 30.0%
AAACAGAAATGGTAGGATCT+TGG - Chr1:29415121-29415140 MsG0180001922.01.T01:CDS 35.0%
AATTTAACAGCCAAGTGAAG+AGG + Chr1:29414490-29414509 None:intergenic 35.0%
AGAGACATTCCTATTGAAGA+TGG - Chr1:29415384-29415403 MsG0180001922.01.T01:CDS 35.0%
ATAAAATCTAGAGGAGTTCC+TGG - Chr1:29415183-29415202 MsG0180001922.01.T01:CDS 35.0%
ATAAGCAGGAAAAGAAAGGA+TGG - Chr1:29415430-29415449 MsG0180001922.01.T01:CDS 35.0%
ATCGTTAAGTTCTTCACTCT+CGG + Chr1:29415256-29415275 None:intergenic 35.0%
CAAATCTTGTAAGTGTCTGA+AGG + Chr1:29414787-29414806 None:intergenic 35.0%
CAATTGCCTTCTTTCATCTT+CGG + Chr1:29415286-29415305 None:intergenic 35.0%
CTGTGATACCTTTCATTTCA+AGG - Chr1:29414755-29414774 MsG0180001922.01.T01:CDS 35.0%
CTTCACTTGGCTGTTAAATT+AGG - Chr1:29414490-29414509 MsG0180001922.01.T01:CDS 35.0%
CTTCAGACACTTACAAGATT+TGG - Chr1:29414785-29414804 MsG0180001922.01.T01:CDS 35.0%
GAAAAGGTGAGCGATTTATT+GGG - Chr1:29415537-29415556 MsG0180001922.01.T01:CDS 35.0%
TATTAAGCATTATCAGCCTC+TGG - Chr1:29414636-29414655 MsG0180001922.01.T01:CDS 35.0%
TCACTTGGCTGTTAAATTAG+GGG - Chr1:29414492-29414511 MsG0180001922.01.T01:CDS 35.0%
TGAAAAGGTGAGCGATTTAT+TGG - Chr1:29415536-29415555 MsG0180001922.01.T01:CDS 35.0%
TGTTAAATTAGGGGATGAAG+TGG - Chr1:29414501-29414520 MsG0180001922.01.T01:CDS 35.0%
TTAACAGGAAAAGTTCCCAT+TGG + Chr1:29415861-29415880 None:intergenic 35.0%
TTACCTAAGCTGTGTAATGT+GGG - Chr1:29414367-29414386 MsG0180001922.01.T01:CDS 35.0%
TTCTCTTTGCGTAGATGAAA+AGG - Chr1:29415521-29415540 MsG0180001922.01.T01:CDS 35.0%
TTTACCTAAGCTGTGTAATG+TGG - Chr1:29414366-29414385 MsG0180001922.01.T01:CDS 35.0%
! AAAATCACAGCCTTATGAAC+AGG + Chr1:29414310-29414329 None:intergenic 35.0%
! AATGGGAACTTTTCCTGTTA+AGG - Chr1:29415860-29415879 MsG0180001922.01.T01:CDS 35.0%
! ACTGAACAATGATAGTGATG+AGG - Chr1:29415335-29415354 MsG0180001922.01.T01:CDS 35.0%
! AGTGTTCTTTTTCTTGGTGA+TGG - Chr1:29414883-29414902 MsG0180001922.01.T01:CDS 35.0%
! CAATAGTGGAGAAAATAAGC+AGG - Chr1:29415416-29415435 MsG0180001922.01.T01:CDS 35.0%
! CTGAACAATGATAGTGATGA+GGG - Chr1:29415336-29415355 MsG0180001922.01.T01:CDS 35.0%
! GAGGATGAGAGACTTTTATA+TGG - Chr1:29414708-29414727 MsG0180001922.01.T01:CDS 35.0%
! TCATAAGGCTGTGATTTTGA+AGG - Chr1:29414312-29414331 MsG0180001922.01.T01:CDS 35.0%
! TGAACAATGATAGTGATGAG+GGG - Chr1:29415337-29415356 MsG0180001922.01.T01:CDS 35.0%
! TTTTGACCGAAGATGAAAGA+AGG - Chr1:29415277-29415296 MsG0180001922.01.T01:CDS 35.0%
!! ATAGGAATGTCTCTAAAGCT+TGG + Chr1:29415378-29415397 None:intergenic 35.0%
!! GCTGTGATTTTGAAGGATTA+TGG - Chr1:29414319-29414338 MsG0180001922.01.T01:CDS 35.0%
!! TTCGATTTTAGAGGAAGAGA+AGG - Chr1:29414411-29414430 MsG0180001922.01.T01:CDS 35.0%
AAGGATTGAGGCCTATTCTT+TGG - Chr1:29415724-29415743 MsG0180001922.01.T01:CDS 40.0%
AGATGAAAGAAGGCAATTGG+AGG - Chr1:29415287-29415306 MsG0180001922.01.T01:CDS 40.0%
AGCAGAAGTCGTCATAAAGA+TGG - Chr1:29415678-29415697 MsG0180001922.01.T01:CDS 40.0%
AGGATTATGGTGAGCTTAAG+AGG - Chr1:29414332-29414351 MsG0180001922.01.T01:CDS 40.0%
ATTCTGTTGAGGTTGTTGTG+AGG - Chr1:29415598-29415617 MsG0180001922.01.T01:CDS 40.0%
CAATCTCTGCTGTGATTGAT+AGG - Chr1:29414440-29414459 MsG0180001922.01.T01:CDS 40.0%
CAGGAAAAGAAAGGATGGTT+TGG - Chr1:29415435-29415454 MsG0180001922.01.T01:CDS 40.0%
CAGGAGAAAACAGAAATGGT+AGG - Chr1:29415114-29415133 MsG0180001922.01.T01:CDS 40.0%
CATGATCTCACACAAGGAAA+AGG - Chr1:29414942-29414961 MsG0180001922.01.T01:CDS 40.0%
CGAAGATGAAAGAAGGCAAT+TGG - Chr1:29415284-29415303 MsG0180001922.01.T01:CDS 40.0%
CTACCGTTACCATCTTCAAT+AGG + Chr1:29415396-29415415 None:intergenic 40.0%
GCTGAAATGCTTATGGTTGT+TGG - Chr1:29414526-29414545 MsG0180001922.01.T01:CDS 40.0%
GGAGTTTGCAGAATGAACAA+GGG - Chr1:29414557-29414576 MsG0180001922.01.T01:CDS 40.0%
GGGATTGATGTTGCAAAGTT+TGG - Chr1:29414277-29414296 MsG0180001922.01.T01:CDS 40.0%
GGTGCAATCCTTGAAATGAA+AGG + Chr1:29414766-29414785 None:intergenic 40.0%
GTGAGCTTAAGAGGATACTT+GGG - Chr1:29414341-29414360 MsG0180001922.01.T01:CDS 40.0%
TAATGTGGGTGAGATTCGTA+CGG - Chr1:29414381-29414400 MsG0180001922.01.T01:CDS 40.0%
TCTACGCAAAGAGAACTTCT+TGG + Chr1:29415516-29415535 None:intergenic 40.0%
TGAGCTTAAGAGGATACTTG+GGG - Chr1:29414342-29414361 MsG0180001922.01.T01:CDS 40.0%
TGGAGTTTGCAGAATGAACA+AGG - Chr1:29414556-29414575 MsG0180001922.01.T01:CDS 40.0%
TGGTCATAGTCCTGTTCATA+AGG - Chr1:29414297-29414316 MsG0180001922.01.T01:CDS 40.0%
TTCTGTTGAGGTTGTTGTGA+GGG - Chr1:29415599-29415618 MsG0180001922.01.T01:CDS 40.0%
TTTGGCGAAAGCCAAAGAAT+AGG + Chr1:29415738-29415757 None:intergenic 40.0%
! CTACCATTTCTGTTTTCTCC+TGG + Chr1:29415116-29415135 None:intergenic 40.0%
! GAAAAGAAAGGATGGTTTGG+TGG - Chr1:29415438-29415457 MsG0180001922.01.T01:CDS 40.0%
! TTCTTTTGCCTCAGTTGACT+TGG - Chr1:29415085-29415104 MsG0180001922.01.T01:CDS 40.0%
!! TGAAGAGGAGTATCACGATT+CGG + Chr1:29414475-29414494 None:intergenic 40.0%
!! TTATGGTTGTTGGTGCTGAT+TGG - Chr1:29414536-29414555 MsG0180001922.01.T01:CDS 40.0%
!!! TCTAGATGATGCTGCTTTTG+CGG - Chr1:29414978-29414997 MsG0180001922.01.T01:CDS 40.0%
!!! TTTTCTTGGTGATGGTTCAG+AGG - Chr1:29414891-29414910 MsG0180001922.01.T01:CDS 40.0%
ACGCAAAGAGAACTTCTTGG+TGG + Chr1:29415513-29415532 None:intergenic 45.0%
ACTCTGCATGATCTCACACA+AGG - Chr1:29414936-29414955 MsG0180001922.01.T01:CDS 45.0%
AGTGGCTGCTGAAATGCTTA+TGG - Chr1:29414519-29414538 MsG0180001922.01.T01:CDS 45.0%
ATTGGAGGATGCACTTAAGC+TGG - Chr1:29415302-29415321 MsG0180001922.01.T01:CDS 45.0%
GAGCTTAAGAGGATACTTGG+GGG - Chr1:29414343-29414362 MsG0180001922.01.T01:CDS 45.0%
GATCTCACACAAGGAAAAGG+AGG - Chr1:29414945-29414964 MsG0180001922.01.T01:CDS 45.0%
GCCTGAGTAACATCAATACC+AGG + Chr1:29415063-29415082 None:intergenic 45.0%
GGTAGGATCTTGGAAAGCTA+AGG - Chr1:29415131-29415150 MsG0180001922.01.T01:CDS 45.0%
GGTGAGCTTAAGAGGATACT+TGG - Chr1:29414340-29414359 MsG0180001922.01.T01:CDS 45.0%
GTTTGCAGAATGAACAAGGG+TGG - Chr1:29414560-29414579 MsG0180001922.01.T01:CDS 45.0%
TCACCCACATTACACAGCTT+AGG + Chr1:29414373-29414392 None:intergenic 45.0%
TCGTGATACTCCTCTTCACT+TGG - Chr1:29414477-29414496 MsG0180001922.01.T01:CDS 45.0%
TCTAAGGGCTGACATGACTT+TGG - Chr1:29414822-29414841 MsG0180001922.01.T01:CDS 45.0%
TCTGTTGAGGTTGTTGTGAG+GGG - Chr1:29415600-29415619 MsG0180001922.01.T01:CDS 45.0%
TGAGATCATGCAGAGTGATC+CGG + Chr1:29414932-29414951 None:intergenic 45.0%
! GAAAAGGGGTGCGAATCTAA+GGG - Chr1:29414807-29414826 MsG0180001922.01.T01:CDS 45.0%
! GGAAGCGGTTTCGATTTTAG+AGG - Chr1:29414402-29414421 MsG0180001922.01.T01:CDS 45.0%
!! AGAAAGGATGGTTTGGTGGA+TGG - Chr1:29415442-29415461 MsG0180001922.01.T01:CDS 45.0%
!! ATGACTTTGGCTGGTTTCGA+CGG - Chr1:29414835-29414854 MsG0180001922.01.T01:CDS 45.0%
!! GATGGTAACGGTAGCAATAG+TGG - Chr1:29415402-29415421 MsG0180001922.01.T01:CDS 45.0%
!! GCCTGGTATTGATGTTACTC+AGG - Chr1:29415059-29415078 MsG0180001922.01.T01:CDS 45.0%
!! TTGGTGATGGTTCAGAGGAT+GGG - Chr1:29414896-29414915 MsG0180001922.01.T01:CDS 45.0%
!!! TTTTGCCTCAGTTGACTTGG+AGG - Chr1:29415088-29415107 MsG0180001922.01.T01:CDS 45.0%
ACCAGGGAGACATTCTGTTG+AGG - Chr1:29415587-29415606 MsG0180001922.01.T01:CDS 50.0%
ACCTCAACAGAATGTCTCCC+TGG + Chr1:29415591-29415610 None:intergenic 50.0%
AGCATTATCAGCCTCTGGCT+TGG - Chr1:29414641-29414660 MsG0180001922.01.T01:CDS 50.0%
CTTGGGCGAAATGGTGTAGA+AGG - Chr1:29414659-29414678 MsG0180001922.01.T01:CDS 50.0%
GAGATCATGCAGAGTGATCC+GGG + Chr1:29414931-29414950 None:intergenic 50.0%
GCGCCAGGAGAAAACAGAAA+TGG - Chr1:29415110-29415129 MsG0180001922.01.T01:CDS 50.0%
GTGTAGAAGGTTGCCTCGTT+TGG - Chr1:29414672-29414691 MsG0180001922.01.T01:CDS 50.0%
TCATCGTCTGTCATAGCTCC+AGG + Chr1:29415204-29415223 None:intergenic 50.0%
! GCATTATCAGCCTCTGGCTT+GGG - Chr1:29414642-29414661 MsG0180001922.01.T01:CDS 50.0%
! GGAAAAGGGGTGCGAATCTA+AGG - Chr1:29414806-29414825 MsG0180001922.01.T01:CDS 50.0%
!! CTTGGTGATGGTTCAGAGGA+TGG - Chr1:29414895-29414914 MsG0180001922.01.T01:CDS 50.0%
!! GAGCAAGCACTGACCTTAAC+AGG + Chr1:29415876-29415895 None:intergenic 50.0%
AGGGCTGACATGACTTTGGC+TGG - Chr1:29414826-29414845 MsG0180001922.01.T01:CDS 55.0%
GGGTGAGATTCGTACGGAAG+CGG - Chr1:29414387-29414406 MsG0180001922.01.T01:CDS 55.0%
TTGTGAGGGGCGATGAGCAA+CGG - Chr1:29415613-29415632 MsG0180001922.01.T01:CDS 55.0%
!! CTCGTTTGGTAGCGACGATG+CGG - Chr1:29414686-29414705 MsG0180001922.01.T01:CDS 55.0%
CACCATTTCGCCCAAGCCAG+AGG + Chr1:29414655-29414674 None:intergenic 60.0%
CGCATCGTCGCTACCAAACG+AGG + Chr1:29414688-29414707 None:intergenic 60.0%
GAGGATGGGAAAGTCCAGCC+CGG - Chr1:29414910-29414929 MsG0180001922.01.T01:CDS 60.0%
TCATGCAGAGTGATCCGGGC+TGG + Chr1:29414927-29414946 None:intergenic 60.0%
TGGCGCCTCCAAGTCAACTG+AGG + Chr1:29415096-29415115 None:intergenic 60.0%
!! AGCCTCTGGCTTGGGCGAAA+TGG - Chr1:29414650-29414669 MsG0180001922.01.T01:CDS 60.0%
!! GTTTGGTAGCGACGATGCGG+AGG - Chr1:29414689-29414708 MsG0180001922.01.T01:CDS 60.0%
!! TCAGTTGACTTGGAGGCGCC+AGG - Chr1:29415095-29415114 MsG0180001922.01.T01:CDS 60.0%
TGAGGGGCGATGAGCAACGG+AGG - Chr1:29415616-29415635 MsG0180001922.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 29414271 29415911 29414271 ID=MsG0180001922.01;Name=MsG0180001922.01
Chr1 mRNA 29414271 29415911 29414271 ID=MsG0180001922.01.T01;Parent=MsG0180001922.01;Name=MsG0180001922.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|546
Chr1 exon 29414271 29415911 29414271 ID=MsG0180001922.01.T01:exon:42232;Parent=MsG0180001922.01.T01
Chr1 CDS 29414271 29415911 29414271 ID=MsG0180001922.01.T01:cds;Parent=MsG0180001922.01.T01
Gene Sequence

>MsG0180001922.01.T01

ATGGCAGGGATTGATGTTGCAAAGTTTGGTCATAGTCCTGTTCATAAGGCTGTGATTTTGAAGGATTATGGTGAGCTTAAGAGGATACTTGGGGGTTTACCTAAGCTGTGTAATGTGGGTGAGATTCGTACGGAAGCGGTTTCGATTTTAGAGGAAGAGAAGGCTGATGCAATCTCTGCTGTGATTGATAGGCGTGACGTGCCGAATCGTGATACTCCTCTTCACTTGGCTGTTAAATTAGGGGATGAAGTGGCTGCTGAAATGCTTATGGTTGTTGGTGCTGATTGGAGTTTGCAGAATGAACAAGGGTGGAGTGCTCTTCAAGAAGCTATTTGCAGTCGAGAAGAGCGTATTGCCAAGATCATTATTAAGCATTATCAGCCTCTGGCTTGGGCGAAATGGTGTAGAAGGTTGCCTCGTTTGGTAGCGACGATGCGGAGGATGAGAGACTTTTATATGGAGATTACTTTCAATTTTGAGAGTTCTGTGATACCTTTCATTTCAAGGATTGCACCTTCAGACACTTACAAGATTTGGAAAAGGGGTGCGAATCTAAGGGCTGACATGACTTTGGCTGGTTTCGACGGTTTTAGAATTCAGAGATCAGATCAAAGTGTTCTTTTTCTTGGTGATGGTTCAGAGGATGGGAAAGTCCAGCCCGGATCACTCTGCATGATCTCACACAAGGAAAAGGAGGTACTTAATGCTCTAGATGATGCTGCTTTTGCGGCAAATGATGAAGAAGTTCAGCATGAAGTAGCTGCAATGTCTAAAACAAATATATTTAGGCCTGGTATTGATGTTACTCAGGCAGTTCTTTTGCCTCAGTTGACTTGGAGGCGCCAGGAGAAAACAGAAATGGTAGGATCTTGGAAAGCTAAGGTGTATGATATGCACAATGTTGTTGTAAGTATAAAATCTAGAGGAGTTCCTGGAGCTATGACAGACGATGAGTTATTCTCGTCTTGCAATGAAAATGAAACCGAGAGTGAAGAACTTAACGATATTTTGACCGAAGATGAAAGAAGGCAATTGGAGGATGCACTTAAGCTGGATTCGTCAGAACTGAACAATGATAGTGATGAGGGGATCATTGCGCATCGTCCAAGCTTTAGAGACATTCCTATTGAAGATGGTAACGGTAGCAATAGTGGAGAAAATAAGCAGGAAAAGAAAGGATGGTTTGGTGGATGGAGAAAAAAAGATTATAAACATGAAGCAGCGTCGAAGAAGTTTACACCACCAAGAAGTTCTCTTTGCGTAGATGAAAAGGTGAGCGATTTATTGGGAGATTCTCCTTCAAATAATCAGATTAAACCAGGGAGACATTCTGTTGAGGTTGTTGTGAGGGGCGATGAGCAACGGAGGAAAAAAGATGCCAAAGCTTCTTCTGTAAATTCTGATAGCAGCAGAAGTCGTCATAAAGATGGAAGTCGTGAAAATGAATATAAGAAAGGATTGAGGCCTATTCTTTGGCTTTCGCCAAACTTTCCATTAAAAATTGAAGAACTCTTGCCATTACTTGACATTGTTGCAAACAAAGTTAAAGCAATTCGACGATTAAGAGAATTACTTACAACAAAACTTCCAATGGGAACTTTTCCTGTTAAGGTCAGTGCTTGCTCATCATCTTCATTTTAA

Protein sequence

>MsG0180001922.01.T01

MAGIDVAKFGHSPVHKAVILKDYGELKRILGGLPKLCNVGEIRTEAVSILEEEKADAISAVIDRRDVPNRDTPLHLAVKLGDEVAAEMLMVVGADWSLQNEQGWSALQEAICSREERIAKIIIKHYQPLAWAKWCRRLPRLVATMRRMRDFYMEITFNFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRSDQSVLFLGDGSEDGKVQPGSLCMISHKEKEVLNALDDAAFAANDEEVQHEVAAMSKTNIFRPGIDVTQAVLLPQLTWRRQEKTEMVGSWKAKVYDMHNVVVSIKSRGVPGAMTDDELFSSCNENETESEELNDILTEDERRQLEDALKLDSSELNNDSDEGIIAHRPSFRDIPIEDGNGSNSGENKQEKKGWFGGWRKKDYKHEAASKKFTPPRSSLCVDEKVSDLLGDSPSNNQIKPGRHSVEVVVRGDEQRRKKDAKASSVNSDSSRSRHKDGSRENEYKKGLRPILWLSPNFPLKIEELLPLLDIVANKVKAIRRLRELLTTKLPMGTFPVKVSACSSSSF*