AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005732.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005732.01.T01 MTR_1g105930 100.000 38 0 0 207 244 56 93 2.75e-18 83.2
MsG0180005732.01.T01 MTR_1g105930 69.318 88 20 3 82 169 1 81 5.78e-15 73.9
MsG0180005732.01.T01 MTR_5g005370 78.947 38 8 0 207 244 2 39 1.37e-13 69.3
MsG0180005732.01.T01 MTR_5g005370 78.947 38 8 0 207 244 37 74 1.52e-13 69.7
MsG0180005732.01.T01 MTR_5g005370 78.947 38 8 0 207 244 9 46 1.58e-13 69.3
MsG0180005732.01.T01 MTR_5g005370 78.947 38 8 0 207 244 37 74 1.72e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005732.01.T01 AT4G33770 64.151 53 11 1 192 244 6 50 2.23e-14 71.6
MsG0180005732.01.T01 AT4G33770 81.081 37 7 0 208 244 107 143 4.79e-14 71.6
MsG0180005732.01.T01 AT4G08170 71.429 42 12 0 207 248 66 107 1.22e-12 67.4

Find 42 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAAGAGAAATGAAATT+TGG 0.289856 1:+95396671 None:intergenic
TATCTCTCTATGTGTCTTGT+TGG 0.339115 1:-95397915 MsG0180005732.01.T01:CDS
TTAATTATGCGTTGTCAGTT+GGG 0.373994 1:-95398364 MsG0180005732.01.T01:CDS
ATTTGACATTGTCTTGCATA+AGG 0.382180 1:-95395321 MsG0180005732.01.T01:intron
CTTAATTATGCGTTGTCAGT+TGG 0.383246 1:-95398365 MsG0180005732.01.T01:CDS
TACCAAGAAACAAACCAGTT+TGG 0.426936 1:+95396244 None:intergenic
GTCGGTCACGAATGGAGCTC+GGG 0.430190 1:+95396291 None:intergenic
TTCTTGTAAACATACCAAAC+TGG 0.431549 1:-95396258 MsG0180005732.01.T01:intron
TTGGTACAATGTTTGTAAAA+CGG 0.440510 1:-95397896 MsG0180005732.01.T01:CDS
AGGTAAAGGCAATGACCATT+TGG 0.447715 1:-95398336 MsG0180005732.01.T01:CDS
TGGGTCAGAAAATTGTTGTT+GGG 0.450840 1:-95396733 MsG0180005732.01.T01:CDS
TTGGGTCAGAAAATTGTTGT+TGG 0.460458 1:-95396734 MsG0180005732.01.T01:CDS
ATTTGTTCTTTCCAGTTGTT+AGG 0.472300 1:-95395103 MsG0180005732.01.T01:intron
CAGTAAATGTCATGTCCAAA+TGG 0.473560 1:+95398321 None:intergenic
CAAATTTCATTTCTCTTGCA+AGG 0.481455 1:-95396670 MsG0180005732.01.T01:CDS
ATTCTAATGTCAATTTGTGA+TGG 0.500108 1:-95398571 None:intergenic
TTATGCAAGACAATGTCAAA+TGG 0.500174 1:+95395323 None:intergenic
TCTATGAAGACGGTTAGATC+TGG 0.504422 1:-95397949 MsG0180005732.01.T01:CDS
TTCTAATGTCAATTTGTGAT+GGG 0.515587 1:-95398570 None:intergenic
TCCAGTTGTTAGGCGAGGAA+TGG 0.516509 1:-95395093 MsG0180005732.01.T01:intron
TAATTATGCGTTGTCAGTTG+GGG 0.523875 1:-95398363 MsG0180005732.01.T01:CDS
ACTGACAACGCATAATTAAG+TGG 0.528911 1:+95398368 None:intergenic
TGTCGGTCACGAATGGAGCT+CGG 0.537570 1:+95396290 None:intergenic
GTTTGTAAAACGGAGTTCGA+TGG 0.541154 1:-95397886 MsG0180005732.01.T01:CDS
TACAAGAAATCTAAAAGTGT+CGG 0.557279 1:+95396273 None:intergenic
CTAAAAGTGTCGGTCACGAA+TGG 0.558524 1:+95396283 None:intergenic
TTCTTTCCAGTTGTTAGGCG+AGG 0.558531 1:-95395098 MsG0180005732.01.T01:intron
TATGTGTAATGCAGGAGCAA+GGG 0.560921 1:-95395395 MsG0180005732.01.T01:intron
TTATGTGTAATGCAGGAGCA+AGG 0.565876 1:-95395396 MsG0180005732.01.T01:intron
TACAAGTACAATGTGAAAGT+AGG 0.575523 1:+95395031 None:intergenic
TGAAAGTAGGCTGAAGTGAG+TGG 0.580145 1:+95395044 None:intergenic
GTTTGCAGCATCTATGAAGA+CGG 0.602980 1:-95397959 MsG0180005732.01.T01:CDS
AACAAGCCACTGTCAGAACA+AGG 0.605835 1:-95395347 MsG0180005732.01.T01:CDS
ACGGAGTTCGATGGAAATCA+CGG 0.610047 1:-95397877 MsG0180005732.01.T01:CDS
ATGTGTAATGCAGGAGCAAG+GGG 0.610801 1:-95395394 MsG0180005732.01.T01:intron
AATTATGCGTTGTCAGTTGG+GGG 0.627727 1:-95398362 MsG0180005732.01.T01:CDS
AGAAGTGATGGCGAAATCTG+AGG 0.629932 1:-95396774 MsG0180005732.01.T01:CDS
AATGGACCTTGTTCTGACAG+TGG 0.636759 1:+95395341 None:intergenic
CTGACAACGCATAATTAAGT+GGG 0.647885 1:+95398369 None:intergenic
TCGGTCACGAATGGAGCTCG+GGG 0.652364 1:+95396292 None:intergenic
GGAATGGCGAGAGATCATTG+AGG 0.697509 1:-95395077 MsG0180005732.01.T01:CDS
TTGAGCTACAGACATTACAT+CGG 0.700555 1:+95396324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTGATTGAATAA+CGG + Chr1:95396086-95396105 None:intergenic 10.0%
!! AAACAAATAAAATACAGAAA+AGG - Chr1:95396398-95396417 MsG0180005732.01.T01:CDS 15.0%
!! AAATGTCAATTTAAATTCTT+TGG - Chr1:95395188-95395207 MsG0180005732.01.T01:intron 15.0%
!! AACAAATAAAATACAGAAAA+GGG - Chr1:95396399-95396418 MsG0180005732.01.T01:intron 15.0%
!! AGAAATATTTATTGCTTAAA+AGG - Chr1:95396168-95396187 MsG0180005732.01.T01:intron 15.0%
!! GTATATATTGAGATAATAAA+AGG - Chr1:95395513-95395532 MsG0180005732.01.T01:intron 15.0%
!!! AACTTAAGCTATATTTTTAT+CGG - Chr1:95398061-95398080 MsG0180005732.01.T01:intron 15.0%
!!! AGTGATTTTTTTTTTTTTAG+TGG - Chr1:95397025-95397044 MsG0180005732.01.T01:intron 15.0%
!!! ATAGTTTTTCTTGTTATAAT+AGG - Chr1:95396107-95396126 MsG0180005732.01.T01:intron 15.0%
!!! ATTTTTTTTTTTTTAGTGGT+GGG - Chr1:95397029-95397048 MsG0180005732.01.T01:intron 15.0%
!!! TTTTAAAAAGGTTTCATTTA+TGG - Chr1:95398375-95398394 MsG0180005732.01.T01:CDS 15.0%
!!! TTTTGACAATTGAATAAAAA+TGG - Chr1:95395151-95395170 MsG0180005732.01.T01:intron 15.0%
!!! TTTTTAATTGATTGAATAAC+GGG + Chr1:95396085-95396104 None:intergenic 15.0%
!! ATGATCAAAAAGAAAATCAT+TGG + Chr1:95396969-95396988 None:intergenic 20.0%
!! TTTCTTCCTATAATAAGTAT+TGG + Chr1:95396010-95396029 None:intergenic 20.0%
!!! GATTTTTTTTTTTTTAGTGG+TGG - Chr1:95397028-95397047 MsG0180005732.01.T01:intron 20.0%
!!! TAAACTCTGTTTTTCTTTTT+TGG - Chr1:95397136-95397155 MsG0180005732.01.T01:intron 20.0%
!!! TTTCTTGTTATAATAGGAAT+TGG - Chr1:95396113-95396132 MsG0180005732.01.T01:intron 20.0%
!!! TTTTTTTTTTTTTAGTGGTG+GGG - Chr1:95397030-95397049 MsG0180005732.01.T01:intron 20.0%
! AAAACTTACATGACTTTACA+TGG - Chr1:95397628-95397647 MsG0180005732.01.T01:intron 25.0%
! AAAGATTTGATCTTTGAATC+AGG - Chr1:95396745-95396764 MsG0180005732.01.T01:CDS 25.0%
! AAGAAAAACAGAGTTTACAA+TGG + Chr1:95397133-95397152 None:intergenic 25.0%
! AAGATTTGATCTTTGAATCA+GGG - Chr1:95396746-95396765 MsG0180005732.01.T01:CDS 25.0%
! ACATATAATTTCTTCCGTAT+TGG + Chr1:95395397-95395416 None:intergenic 25.0%
! ATCACTATCATAGTTATAAG+TGG + Chr1:95395349-95395368 None:intergenic 25.0%
! ATCCTTCCAATACTTATTAT+AGG - Chr1:95396001-95396020 MsG0180005732.01.T01:intron 25.0%
! ATTATGGAAATTGAGAATGA+TGG + Chr1:95396668-95396687 None:intergenic 25.0%
! ATTGTTCATAAGAAAGATAC+CGG - Chr1:95397479-95397498 MsG0180005732.01.T01:intron 25.0%
! CAAATCAATATTGTCAACTA+TGG + Chr1:95397927-95397946 None:intergenic 25.0%
! CTAAAAATTATGTGTAATGC+AGG - Chr1:95398192-95398211 MsG0180005732.01.T01:intron 25.0%
! GAAATGAAATTTATCAATCG+CGG + Chr1:95396696-95396715 None:intergenic 25.0%
! GTTGGCATATGAATTAAAAT+GGG - Chr1:95395125-95395144 MsG0180005732.01.T01:intron 25.0%
! TATAGAAAAGAAGAGGAATT+AGG + Chr1:95396585-95396604 None:intergenic 25.0%
! TCAATAATGCAGTAATATTG+TGG + Chr1:95395592-95395611 None:intergenic 25.0%
! TCATTCTCAATTTCCATAAT+CGG - Chr1:95396668-95396687 MsG0180005732.01.T01:CDS 25.0%
! TGTGTGTGTGTAATTTATAA+TGG + Chr1:95396611-95396630 None:intergenic 25.0%
! TGTTCTCAAATATGTATTTG+TGG + Chr1:95395567-95395586 None:intergenic 25.0%
! TGTTGGCATATGAATTAAAA+TGG - Chr1:95395124-95395143 MsG0180005732.01.T01:intron 25.0%
! TTATGGAAATTGAGAATGAT+GGG + Chr1:95396667-95396686 None:intergenic 25.0%
! TTGGTACAATGTTTGTAAAA+CGG - Chr1:95395699-95395718 MsG0180005732.01.T01:intron 25.0%
!! CATAGTTGACAATATTGATT+TGG - Chr1:95397925-95397944 MsG0180005732.01.T01:CDS 25.0%
!! CTGCATTACACATAATTTTT+AGG + Chr1:95398194-95398213 None:intergenic 25.0%
!! TACAAGAAATCTAAAAGTGT+CGG + Chr1:95397325-95397344 None:intergenic 25.0%
!! TATAATTTGTCTTTGTGAGA+TGG - Chr1:95397522-95397541 MsG0180005732.01.T01:intron 25.0%
!! TTCCTTGTAATTTTAAATCC+CGG + Chr1:95397501-95397520 None:intergenic 25.0%
!!! AATATTGATTTGGATAGTCA+AGG - Chr1:95397935-95397954 MsG0180005732.01.T01:CDS 25.0%
!!! ATGGTTTTATAGAAAAGAAG+AGG + Chr1:95396592-95396611 None:intergenic 25.0%
!!! ATTTTTATCGGTTCAATGTT+TGG - Chr1:95398073-95398092 MsG0180005732.01.T01:intron 25.0%
!!! CTTTTGTTGTTACTTTTTGT+CGG - Chr1:95397161-95397180 MsG0180005732.01.T01:intron 25.0%
!!! TAATTTTTTACGAGAATCAG+AGG - Chr1:95397545-95397564 MsG0180005732.01.T01:intron 25.0%
!!! TTCCTATAATAAGTATTGGA+AGG + Chr1:95396006-95396025 None:intergenic 25.0%
AAATTATTAACACTCAGCAG+TGG - Chr1:95398014-95398033 MsG0180005732.01.T01:intron 30.0%
AGATTTGATCTTTGAATCAG+GGG - Chr1:95396747-95396766 MsG0180005732.01.T01:CDS 30.0%
ATGATGCAAATATCTGTAGT+GGG - Chr1:95395451-95395470 MsG0180005732.01.T01:intron 30.0%
ATTATATGTATCTGCACATG+AGG - Chr1:95395408-95395427 MsG0180005732.01.T01:intron 30.0%
ATTGTTGTGAGTGATGAAAT+TGG + Chr1:95396639-95396658 None:intergenic 30.0%
ATTTGACATTGTCTTGCATA+AGG - Chr1:95398274-95398293 MsG0180005732.01.T01:intron 30.0%
ATTTGTTCTTTCCAGTTGTT+AGG - Chr1:95398492-95398511 MsG0180005732.01.T01:intron 30.0%
CAAAATTTATGCTCAACCTT+TGG - Chr1:95397418-95397437 MsG0180005732.01.T01:intron 30.0%
CAAATTTCATTTCTCTTGCA+AGG - Chr1:95396925-95396944 MsG0180005732.01.T01:intron 30.0%
CTTGCAAGAGAAATGAAATT+TGG + Chr1:95396927-95396946 None:intergenic 30.0%
GATACCGATCTTGATTTATT+TGG - Chr1:95395323-95395342 MsG0180005732.01.T01:CDS 30.0%
TACAAGTACAATGTGAAAGT+AGG + Chr1:95398567-95398586 None:intergenic 30.0%
TCAAATTCCACAACACTATT+AGG + Chr1:95397811-95397830 None:intergenic 30.0%
TTAATTATGCGTTGTCAGTT+GGG - Chr1:95395231-95395250 MsG0180005732.01.T01:intron 30.0%
TTACTGCATTATTGACCAAT+TGG - Chr1:95395597-95395616 MsG0180005732.01.T01:intron 30.0%
TTATGCAAGACAATGTCAAA+TGG + Chr1:95398275-95398294 None:intergenic 30.0%
TTCTTGTAAACATACCAAAC+TGG - Chr1:95397337-95397356 MsG0180005732.01.T01:intron 30.0%
TTGTTCATAAGAAAGATACC+GGG - Chr1:95397480-95397499 MsG0180005732.01.T01:intron 30.0%
! ACAATTTTCTGACCCAAAAA+CGG + Chr1:95396858-95396877 None:intergenic 30.0%
! AGAAAGAAAAAGTGTGGATT+GGG + Chr1:95396544-95396563 None:intergenic 30.0%
! ATATCAAACAAGAGCACAAA+AGG + Chr1:95397967-95397986 None:intergenic 30.0%
! ATATTGTCAACTATGGATTG+CGG + Chr1:95397920-95397939 None:intergenic 30.0%
! ATTTTCGGTATGAGACTAAA+CGG - Chr1:95396771-95396790 MsG0180005732.01.T01:CDS 30.0%
! CAAAGGTTGAGCATAAATTT+TGG + Chr1:95397420-95397439 None:intergenic 30.0%
! GAAATGATGGAATGTAAATG+TGG - Chr1:95396333-95396352 MsG0180005732.01.T01:CDS 30.0%
! TACCGGGATTTAAAATTACA+AGG - Chr1:95397496-95397515 MsG0180005732.01.T01:intron 30.0%
! TTGACTCTTGATCTTTTGAT+TGG - Chr1:95397685-95397704 MsG0180005732.01.T01:intron 30.0%
!! CACATAATTTTTAGGCATTC+AGG + Chr1:95398186-95398205 None:intergenic 30.0%
!! GGTAATCTTGTTATTGTCTT+TGG - Chr1:95397370-95397389 MsG0180005732.01.T01:intron 30.0%
!! TACATGGTTCAAAGTTTTGA+TGG - Chr1:95398143-95398162 MsG0180005732.01.T01:intron 30.0%
!! TAGTAGAGTTTGTTACAAGT+GGG + Chr1:95395946-95395965 None:intergenic 30.0%
!! TTATGGTTTTGCTGAATTTG+TGG - Chr1:95398392-95398411 MsG0180005732.01.T01:intron 30.0%
!!! GTGGATTGGGATTTTTTTTT+GGG + Chr1:95396531-95396550 None:intergenic 30.0%
!!! TGTGGATTGGGATTTTTTTT+TGG + Chr1:95396532-95396551 None:intergenic 30.0%
AAAACCTTGTCGCTAAATGA+GGG + Chr1:95397759-95397778 None:intergenic 35.0%
AATTCATATGCCAACAGTGA+AGG + Chr1:95395120-95395139 None:intergenic 35.0%
ACAGATATTTGCATCATGGT+GGG + Chr1:95395448-95395467 None:intergenic 35.0%
ACTGACAACGCATAATTAAG+TGG + Chr1:95395230-95395249 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGTGA+TGG - Chr1:95396809-95396828 MsG0180005732.01.T01:CDS 35.0%
AGTAGACTGAGAATATGCTT+AGG + Chr1:95395086-95395105 None:intergenic 35.0%
ATAGATGCTGCAAACTGTAA+GGG + Chr1:95395631-95395650 None:intergenic 35.0%
ATTATTCATACCTGCTCTGT+GGG + Chr1:95396254-95396273 None:intergenic 35.0%
CACTACAGATATTTGCATCA+TGG + Chr1:95395452-95395471 None:intergenic 35.0%
CAGTAAATGTCATGTCCAAA+TGG + Chr1:95395277-95395296 None:intergenic 35.0%
CATGATGCAAATATCTGTAG+TGG - Chr1:95395450-95395469 MsG0180005732.01.T01:intron 35.0%
CATTATTGACCAATTGGACT+TGG - Chr1:95395603-95395622 MsG0180005732.01.T01:intron 35.0%
CTACACAAACACAACCAATA+CGG - Chr1:95395380-95395399 MsG0180005732.01.T01:CDS 35.0%
CTGACAACGCATAATTAAGT+GGG + Chr1:95395229-95395248 None:intergenic 35.0%
CTTAATTATGCGTTGTCAGT+TGG - Chr1:95395230-95395249 MsG0180005732.01.T01:intron 35.0%
GATGGAATGTAAATGTGGAA+TGG - Chr1:95396338-95396357 MsG0180005732.01.T01:CDS 35.0%
GTAGACTGAGAATATGCTTA+GGG + Chr1:95395085-95395104 None:intergenic 35.0%
GTGGCCAAATAAATCAAGAT+CGG + Chr1:95395330-95395349 None:intergenic 35.0%
TAATTATGCGTTGTCAGTTG+GGG - Chr1:95395232-95395251 MsG0180005732.01.T01:intron 35.0%
TACAGATATTTGCATCATGG+TGG + Chr1:95395449-95395468 None:intergenic 35.0%
TACCAAGAAACAAACCAGTT+TGG + Chr1:95397354-95397373 None:intergenic 35.0%
TATCTCTCTATGTGTCTTGT+TGG - Chr1:95395680-95395699 MsG0180005732.01.T01:intron 35.0%
TATTATTCATACCTGCTCTG+TGG + Chr1:95396255-95396274 None:intergenic 35.0%
TCTATGCAAGAATGCTATAG+AGG + Chr1:95397874-95397893 None:intergenic 35.0%
TGCAAATATTCCTTCACTGT+TGG - Chr1:95395107-95395126 MsG0180005732.01.T01:intron 35.0%
TTGAACCATGTATTCAACCA+AGG + Chr1:95398135-95398154 None:intergenic 35.0%
TTGAGCTACAGACATTACAT+CGG + Chr1:95397274-95397293 None:intergenic 35.0%
TTGGGTCAGAAAATTGTTGT+TGG - Chr1:95396861-95396880 MsG0180005732.01.T01:intron 35.0%
! AATGAGGGCATAAATGATTG+CGG + Chr1:95397744-95397763 None:intergenic 35.0%
! ACCAATTACACAAGCCTTTT+GGG - Chr1:95395858-95395877 MsG0180005732.01.T01:intron 35.0%
! ATTCACAAAAGCACGTTTAC+AGG + Chr1:95395762-95395781 None:intergenic 35.0%
! GAGAAAGAAAAAGTGTGGAT+TGG + Chr1:95396545-95396564 None:intergenic 35.0%
! TGATGGGTAATGTAACAGTT+TGG - Chr1:95395041-95395060 MsG0180005732.01.T01:CDS 35.0%
! TGGGTCAGAAAATTGTTGTT+GGG - Chr1:95396862-95396881 MsG0180005732.01.T01:intron 35.0%
! TGTGTAATTGGTGTGTTGAT+CGG + Chr1:95395850-95395869 None:intergenic 35.0%
!! CAATGTATGAGTTTTGACCT+CGG + Chr1:95397463-95397482 None:intergenic 35.0%
!! GTAGTAGAGTTTGTTACAAG+TGG + Chr1:95395947-95395966 None:intergenic 35.0%
!! TACCAAACTGGTTTGTTTCT+TGG - Chr1:95397349-95397368 MsG0180005732.01.T01:intron 35.0%
!! TTTGACTTGCATGGAAATGA+TGG - Chr1:95396320-95396339 MsG0180005732.01.T01:CDS 35.0%
!!! CTTTGAATCAGGGGTATTTT+CGG - Chr1:95396756-95396775 MsG0180005732.01.T01:CDS 35.0%
!!! TATGAGTCTTTTGACTTGCA+TGG - Chr1:95396311-95396330 MsG0180005732.01.T01:CDS 35.0%
AATTATGCGTTGTCAGTTGG+GGG - Chr1:95395233-95395252 MsG0180005732.01.T01:intron 40.0%
AGAGACATATAGCGTGTGTT+TGG + Chr1:95395798-95395817 None:intergenic 40.0%
AGGTAAAGGCAATGACCATT+TGG - Chr1:95395259-95395278 MsG0180005732.01.T01:intron 40.0%
CACTTCCTTGGTTGAATACA+TGG - Chr1:95398127-95398146 MsG0180005732.01.T01:intron 40.0%
CATAGATGCTGCAAACTGTA+AGG + Chr1:95395632-95395651 None:intergenic 40.0%
CATGTATTCAACCAAGGAAG+TGG + Chr1:95398129-95398148 None:intergenic 40.0%
CTCAATATGGACAACTCCAA+AGG + Chr1:95397437-95397456 None:intergenic 40.0%
CTGTGCAGTGTATTATTTGC+TGG - Chr1:95397083-95397102 MsG0180005732.01.T01:intron 40.0%
CTTAGGGTTAGACGTGATTT+GGG + Chr1:95395069-95395088 None:intergenic 40.0%
GAAAACCTTGTCGCTAAATG+AGG + Chr1:95397760-95397779 None:intergenic 40.0%
GCAGAGAGAAAGAAAAAGTG+TGG + Chr1:95396550-95396569 None:intergenic 40.0%
GTTTGCAGCATCTATGAAGA+CGG - Chr1:95395636-95395655 MsG0180005732.01.T01:intron 40.0%
GTTTGTAAAACGGAGTTCGA+TGG - Chr1:95395709-95395728 MsG0180005732.01.T01:intron 40.0%
TATGTGTAATGCAGGAGCAA+GGG - Chr1:95398200-95398219 MsG0180005732.01.T01:intron 40.0%
TCCCAAAAGGCTTGTGTAAT+TGG + Chr1:95395862-95395881 None:intergenic 40.0%
TCTATGAAGACGGTTAGATC+TGG - Chr1:95395646-95395665 MsG0180005732.01.T01:intron 40.0%
TTAGGGTTAGACGTGATTTG+GGG + Chr1:95395068-95395087 None:intergenic 40.0%
TTATGTGTAATGCAGGAGCA+AGG - Chr1:95398199-95398218 MsG0180005732.01.T01:intron 40.0%
TTATTCATACCTGCTCTGTG+GGG + Chr1:95396253-95396272 None:intergenic 40.0%
TTGACCTCGGATTCTCAATA+TGG + Chr1:95397450-95397469 None:intergenic 40.0%
TTGTCCATATTGAGAATCCG+AGG - Chr1:95397443-95397462 MsG0180005732.01.T01:intron 40.0%
! ACTATGGATTGCGGAAATAG+AGG + Chr1:95397911-95397930 None:intergenic 40.0%
! ATGTTTGGAGTTACCACTGT+CGG - Chr1:95398088-95398107 MsG0180005732.01.T01:intron 40.0%
! CACCAATTACACAAGCCTTT+TGG - Chr1:95395857-95395876 MsG0180005732.01.T01:intron 40.0%
! GCCAAAGTTTTCATCCCAAA+AGG + Chr1:95395875-95395894 None:intergenic 40.0%
! GTGTAATTGGTGTGTTGATC+GGG + Chr1:95395849-95395868 None:intergenic 40.0%
!! ATATTTGCATCATGGTGGGT+AGG + Chr1:95395444-95395463 None:intergenic 40.0%
!! TATTTGCATCATGGTGGGTA+GGG + Chr1:95395443-95395462 None:intergenic 40.0%
!!! GCCTTTTGGGATGAAAACTT+TGG - Chr1:95395871-95395890 MsG0180005732.01.T01:intron 40.0%
AACAAGCCACTGTCAGAACA+AGG - Chr1:95398248-95398267 MsG0180005732.01.T01:intron 45.0%
AATGGACCTTGTTCTGACAG+TGG + Chr1:95398257-95398276 None:intergenic 45.0%
ACGGAGTTCGATGGAAATCA+CGG - Chr1:95395718-95395737 MsG0180005732.01.T01:intron 45.0%
AGGCTACAGCACAGATGATT+TGG + Chr1:95397791-95397810 None:intergenic 45.0%
ATCAATCGCGGAACCGATTA+TGG + Chr1:95396684-95396703 None:intergenic 45.0%
ATGTGTAATGCAGGAGCAAG+GGG - Chr1:95398201-95398220 MsG0180005732.01.T01:intron 45.0%
ATTCAACCAAGGAAGTGGTC+AGG + Chr1:95398124-95398143 None:intergenic 45.0%
GCTGTAGCCTAATAGTGTTG+TGG - Chr1:95397801-95397820 MsG0180005732.01.T01:intron 45.0%
GCTTAGGGTTAGACGTGATT+TGG + Chr1:95395070-95395089 None:intergenic 45.0%
GGCTACAGCACAGATGATTT+GGG + Chr1:95397790-95397809 None:intergenic 45.0%
GTAAGGGATCCAAGTCCAAT+TGG + Chr1:95395615-95395634 None:intergenic 45.0%
GTGGTTGATCTCAGTAGAAG+TGG - Chr1:95398033-95398052 MsG0180005732.01.T01:intron 45.0%
TATGCCCTCATTTAGCGACA+AGG - Chr1:95397752-95397771 MsG0180005732.01.T01:intron 45.0%
TGAAAGTAGGCTGAAGTGAG+TGG + Chr1:95398554-95398573 None:intergenic 45.0%
TTCTTTCCAGTTGTTAGGCG+AGG - Chr1:95398497-95398516 MsG0180005732.01.T01:intron 45.0%
! AGAAGTGATGGCGAAATCTG+AGG - Chr1:95396821-95396840 MsG0180005732.01.T01:CDS 45.0%
! GTTTTACCTGACCACTTCCT+TGG - Chr1:95398115-95398134 MsG0180005732.01.T01:intron 45.0%
! TAGGGTTAGACGTGATTTGG+GGG + Chr1:95395067-95395086 None:intergenic 45.0%
! TGTTTGGAGTTACCACTGTC+GGG - Chr1:95398089-95398108 MsG0180005732.01.T01:intron 45.0%
!! CTAAAAGTGTCGGTCACGAA+TGG + Chr1:95397315-95397334 None:intergenic 45.0%
!! GTGAGTACGACACCGTTTTT+GGG - Chr1:95396843-95396862 MsG0180005732.01.T01:intron 45.0%
!!! TGTTTTTTTTTTTTTTAAAA+AGG - Chr1:95398363-95398382 MsG0180005732.01.T01:CDS 5.0%
GGAATGGCGAGAGATCATTG+AGG - Chr1:95398518-95398537 MsG0180005732.01.T01:intron 50.0%
TCAGTTGGGGGCAAAGGTAA+AGG - Chr1:95395245-95395264 MsG0180005732.01.T01:intron 50.0%
TCCAGTTGTTAGGCGAGGAA+TGG - Chr1:95398502-95398521 MsG0180005732.01.T01:intron 50.0%
! GGTGAGTACGACACCGTTTT+TGG - Chr1:95396842-95396861 MsG0180005732.01.T01:intron 50.0%
! GTTTGGAGTTACCACTGTCG+GGG - Chr1:95398090-95398109 MsG0180005732.01.T01:intron 50.0%
! TTTGGAGTTACCACTGTCGG+GGG - Chr1:95398091-95398110 MsG0180005732.01.T01:intron 50.0%
AGGTAAAACTCCCCCGACAG+TGG + Chr1:95398104-95398123 None:intergenic 55.0%
CATTACCAACCCCACAGAGC+AGG - Chr1:95396241-95396260 MsG0180005732.01.T01:intron 55.0%
GCCATTCCTCGCCTAACAAC+TGG + Chr1:95398506-95398525 None:intergenic 55.0%
TCATACCTGCTCTGTGGGGT+TGG + Chr1:95396249-95396268 None:intergenic 55.0%
TGTCGGTCACGAATGGAGCT+CGG + Chr1:95397308-95397327 None:intergenic 55.0%
GCGTTGTCAGTTGGGGGCAA+AGG - Chr1:95395239-95395258 MsG0180005732.01.T01:intron 60.0%
GTCGGTCACGAATGGAGCTC+GGG + Chr1:95397307-95397326 None:intergenic 60.0%
TCGGTCACGAATGGAGCTCG+GGG + Chr1:95397306-95397325 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 95395030 95398587 95395030 ID=MsG0180005732.01;Name=MsG0180005732.01
Chr1 mRNA 95395030 95398587 95395030 ID=MsG0180005732.01.T01;Parent=MsG0180005732.01;Name=MsG0180005732.01.T01;_AED=0.63;_eAED=0.80;_QI=0|0.16|0.14|0.57|0.83|0.85|7|0|259
Chr1 exon 95398571 95398587 95398571 ID=MsG0180005732.01.T01:exon:10479;Parent=MsG0180005732.01.T01
Chr1 exon 95398307 95398394 95398307 ID=MsG0180005732.01.T01:exon:10478;Parent=MsG0180005732.01.T01
Chr1 exon 95397856 95397980 95397856 ID=MsG0180005732.01.T01:exon:10477;Parent=MsG0180005732.01.T01
Chr1 exon 95396623 95396850 95396623 ID=MsG0180005732.01.T01:exon:10476;Parent=MsG0180005732.01.T01
Chr1 exon 95396259 95396417 95396259 ID=MsG0180005732.01.T01:exon:10475;Parent=MsG0180005732.01.T01
Chr1 exon 95395322 95395403 95395322 ID=MsG0180005732.01.T01:exon:10474;Parent=MsG0180005732.01.T01
Chr1 exon 95395030 95395110 95395030 ID=MsG0180005732.01.T01:exon:10473;Parent=MsG0180005732.01.T01
Chr1 CDS 95398571 95398587 95398571 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Chr1 CDS 95398307 95398394 95398307 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Chr1 CDS 95397856 95397980 95397856 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Chr1 CDS 95396623 95396850 95396623 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Chr1 CDS 95396259 95396417 95396259 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Chr1 CDS 95395322 95395403 95395322 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Chr1 CDS 95395030 95395110 95395030 ID=MsG0180005732.01.T01:cds;Parent=MsG0180005732.01.T01
Gene Sequence

>MsG0180005732.01.T01

ATGTCAATTTGTGATGGTTGCCCACTTAATTATGCGTTGTCAGTTGGGGGCAAAGGTAAAGGCAATGACCATTTGGACATGACATTTACTGTGAAGCTTCATCATTTTGCAGCATCTATGAAGACGGTTAGATCTGGCAAGAAATTTGTATCTCTCTATGTGTCTTGTTGGTACAATGTTTGTAAAACGGAGTTCGATGGAAATCACGGTAGAATTGCACTAGATAACCTGGGTATTTTCGGTATGAGACTAAACGGAGAAATCTCAAGCGAAGAAGAAGAAGAAGAAGTGATGGCGAAATCTGAGGTGAGTACGACACCGTTTTTGGGTCAGAAAATTGTTGTTGGGTATGCTTTAACTGCGAAGAAGAAGAAAAGTTTTCTTCAGCCAAATTTCATTTCTCTTGCAAGGTACAATTTTTACTATTTACCAATGATTTTCTTTTTGATCATTTTCATTGCGAGTAAAAGTCTCACTTTTGATGAAAAAGCTGACATAGAACTACATATAAGTGAGATGACTGATATATCCGATGTAATGTCTGTAGCTCAATGTGATGATCCCCGAGCTCCATTCGTGACCGACACTTTTAGATTTCTTGTAAACATACCAAACTGGAGCAAGGGGATATACTTTGTTAACATTGATCTAAACAAGCCACTGTCAGAACAAGGTCCATTTGACATTGTCTTGCATAAGTTGTTAGGCGAGGAATGGCGAGAGATCATTGAGGTTTGTAAACTCCACTCACTTCAGCCTACTTTCACATTGTACTTGTAA

Protein sequence

>MsG0180005732.01.T01

MSICDGCPLNYALSVGGKGKGNDHLDMTFTVKLHHFAASMKTVRSGKKFVSLYVSCWYNVCKTEFDGNHGRIALDNLGIFGMRLNGEISSEEEEEEVMAKSEVSTTPFLGQKIVVGYALTAKKKKSFLQPNFISLARYNFYYLPMIFFLIIFIASKSLTFDEKADIELHISEMTDISDVMSVAQCDDPRAPFVTDTFRFLVNIPNWSKGIYFVNIDLNKPLSEQGPFDIVLHKLLGEEWREIIEVCKLHSLQPTFTLYL*