AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025532.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025532.01.T01 MTR_5g030430 95.168 683 21 3 1 677 1 677 0.0 1330
MsG0580025532.01.T01 MTR_8g067280 60.838 692 207 17 2 677 3 646 0.0 751
MsG0580025532.01.T01 MTR_5g030420 81.277 235 43 1 21 254 4 238 1.47e-137 404
MsG0580025532.01.T01 MTR_5g030420 83.843 229 36 1 21 248 4 232 1.56e-137 402
MsG0580025532.01.T01 MTR_8g024790 50.000 202 90 4 474 674 272 463 1.16e-53 191
MsG0580025532.01.T01 MTR_8g024790 32.796 186 92 2 44 225 25 181 4.65e-30 124
MsG0580025532.01.T01 MTR_8g024770 51.980 202 88 4 474 673 260 454 2.75e-53 190
MsG0580025532.01.T01 MTR_8g024770 30.319 188 83 3 58 236 36 184 5.91e-25 108
MsG0580025532.01.T01 MTR_7g096350 43.541 209 79 3 466 670 328 501 1.90e-41 158
MsG0580025532.01.T01 MTR_7g096350 28.723 188 118 5 44 225 49 226 3.94e-14 75.9
MsG0580025532.01.T01 MTR_8g027495 42.437 238 107 6 441 670 402 617 1.80e-36 145
MsG0580025532.01.T01 MTR_7g117670 39.834 241 119 6 441 677 350 568 2.02e-34 139
MsG0580025532.01.T01 MTR_7g117670 27.755 245 152 4 3 227 8 247 1.41e-22 102
MsG0580025532.01.T01 MTR_1g072320 33.684 190 105 6 45 225 11 188 1.62e-24 109
MsG0580025532.01.T01 MTR_1g072320 31.217 189 116 4 471 655 451 629 1.78e-18 90.1
MsG0580025532.01.T01 MTR_8g098275 34.104 173 94 6 60 222 19 181 5.72e-22 100
MsG0580025532.01.T01 MTR_8g098275 46.377 69 35 1 489 555 397 465 1.41e-11 68.2
MsG0580025532.01.T01 MTR_5g014640 34.810 158 85 3 482 639 147 286 4.44e-18 86.3
MsG0580025532.01.T01 MTR_2g104490 25.911 247 156 5 395 640 51 271 9.24e-17 82.0
MsG0580025532.01.T01 MTR_2g104490 25.911 247 156 5 395 640 51 271 9.37e-17 82.0
MsG0580025532.01.T01 MTR_4g067010 31.707 164 89 5 480 640 137 280 1.52e-16 81.6
MsG0580025532.01.T01 MTR_3g498695 31.000 200 106 6 491 674 296 479 4.97e-16 81.6
MsG0580025532.01.T01 MTR_4g057270 30.488 164 100 4 483 645 142 292 5.23e-16 80.1
MsG0580025532.01.T01 MTR_2g010450 26.872 227 129 7 421 639 116 313 6.73e-16 80.1
MsG0580025532.01.T01 MTR_0250s0040 31.056 161 100 2 493 653 88 237 1.27e-15 77.8
MsG0580025532.01.T01 MTR_0246s0020 30.481 187 106 4 479 659 190 358 1.86e-15 79.3
MsG0580025532.01.T01 MTR_4g066460 27.753 227 127 5 414 640 99 288 2.31e-15 78.2
MsG0580025532.01.T01 MTR_4g092700 31.579 152 87 2 491 639 156 293 3.12e-15 77.8
MsG0580025532.01.T01 MTR_3g498695 29.851 201 108 6 491 674 296 480 3.21e-15 79.3
MsG0580025532.01.T01 MTR_0194s0050 26.906 223 122 8 470 663 159 369 3.75e-15 78.2
MsG0580025532.01.T01 MTR_4g066380 28.155 206 113 4 435 640 115 285 4.10e-15 77.4
MsG0580025532.01.T01 MTR_3g030700 32.022 178 95 4 481 648 184 345 4.48e-15 77.8
MsG0580025532.01.T01 MTR_0246s0020 31.548 168 91 4 479 640 190 339 2.63e-14 75.5
MsG0580025532.01.T01 MTR_0011s0260 29.091 165 97 3 493 650 183 334 3.39e-14 75.1
MsG0580025532.01.T01 MTR_5g014520 30.723 166 100 4 476 640 142 293 4.04e-14 74.7
MsG0580025532.01.T01 MTR_4g097950 33.600 125 77 2 493 616 70 189 4.35e-14 73.2
MsG0580025532.01.T01 MTR_2g084280 30.435 161 95 5 497 655 137 282 5.38e-14 73.9
MsG0580025532.01.T01 MTR_4g009110 29.878 164 99 3 481 640 162 313 5.82e-14 74.3
MsG0580025532.01.T01 MTR_3g104100 30.526 190 99 6 497 669 199 372 6.67e-14 74.3
MsG0580025532.01.T01 MTR_2g081040 31.122 196 100 6 497 674 181 359 6.92e-14 74.3
MsG0580025532.01.T01 MTR_2g104550 27.684 177 108 3 469 640 114 275 9.81e-14 73.2
MsG0580025532.01.T01 MTR_0011s0210 29.333 150 91 2 493 640 183 319 1.14e-13 73.6
MsG0580025532.01.T01 MTR_1g112680 27.650 217 132 6 472 669 301 511 1.50e-13 73.9
MsG0580025532.01.T01 MTR_4g009540 30.286 175 87 5 479 640 142 294 1.51e-13 72.4
MsG0580025532.01.T01 MTR_4g009540 30.286 175 87 5 479 640 142 294 1.57e-13 72.8
MsG0580025532.01.T01 MTR_6g047570 32.903 155 79 4 493 640 159 295 1.77e-13 72.8
MsG0580025532.01.T01 MTR_2g038040 31.373 153 97 3 494 641 53 202 2.02e-13 70.9
MsG0580025532.01.T01 MTR_4g097940 31.765 170 88 7 474 640 140 284 3.38e-13 71.6
MsG0580025532.01.T01 MTR_5g014600 26.009 223 134 6 463 670 115 321 5.00e-13 71.2
MsG0580025532.01.T01 MTR_8g066770 28.409 176 113 3 492 659 114 284 6.64e-13 70.5
MsG0580025532.01.T01 MTR_5g064950 27.273 209 135 7 477 669 78 285 1.17e-12 69.7
MsG0580025532.01.T01 MTR_8g064700 29.282 181 107 6 475 649 234 399 1.26e-12 70.9
MsG0580025532.01.T01 MTR_7g110810 29.016 193 133 2 352 543 73 262 1.67e-12 70.1
MsG0580025532.01.T01 MTR_7g083900 55.769 52 23 0 491 542 284 335 3.63e-12 69.7
MsG0580025532.01.T01 MTR_7g083900 55.769 52 23 0 491 542 284 335 3.75e-12 69.7
MsG0580025532.01.T01 MTR_5g014560 30.323 155 93 3 493 645 131 272 5.72e-12 67.8
MsG0580025532.01.T01 MTR_6g047550 55.556 54 24 0 493 546 173 226 6.68e-12 67.0
MsG0580025532.01.T01 MTR_8g009020 27.011 174 105 4 477 640 125 286 7.61e-12 67.8
MsG0580025532.01.T01 MTR_8g098275 47.761 67 33 1 489 553 240 306 8.62e-12 68.2
MsG0580025532.01.T01 MTR_8g098275 46.377 69 35 1 489 555 304 372 1.02e-11 68.2
MsG0580025532.01.T01 MTR_4g097920 31.788 151 79 6 493 640 140 269 1.59e-11 66.2
MsG0580025532.01.T01 MTR_2g104560 29.936 157 77 5 494 640 55 188 1.82e-11 65.1
MsG0580025532.01.T01 MTR_4g097920 31.788 151 79 6 493 640 155 284 1.91e-11 66.2
MsG0580025532.01.T01 MTR_0246s0050 28.859 149 76 4 493 635 151 275 4.84e-11 65.1
MsG0580025532.01.T01 MTR_5g030770 28.814 177 99 4 481 652 141 295 5.62e-11 64.7
MsG0580025532.01.T01 MTR_4g098035 28.859 149 76 4 493 635 172 296 6.42e-11 64.7
MsG0580025532.01.T01 MTR_4g094762 28.796 191 116 5 494 676 293 471 8.02e-11 65.5
MsG0580025532.01.T01 MTR_1g028470 26.289 194 108 5 492 656 87 274 9.32e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025532.01.T01 AT1G32640 52.192 707 212 21 1 674 10 623 0.0 617
MsG0580025532.01.T01 AT5G46760 50.511 685 222 18 3 675 11 590 0.0 538
MsG0580025532.01.T01 AT4G17880 64.552 268 64 6 410 676 351 588 4.95e-105 332
MsG0580025532.01.T01 AT4G17880 58.303 271 99 5 2 263 22 287 1.29e-93 301
MsG0580025532.01.T01 AT5G46830 54.974 191 71 3 484 673 334 510 1.36e-54 195
MsG0580025532.01.T01 AT5G46830 46.218 238 107 6 5 231 4 231 1.78e-54 195
MsG0580025532.01.T01 AT1G01260 40.741 243 99 5 433 670 373 575 1.00e-41 160
MsG0580025532.01.T01 AT1G01260 31.169 231 150 3 3 225 7 236 1.77e-29 124
MsG0580025532.01.T01 AT1G01260 40.741 243 99 5 433 670 373 575 1.00e-41 160
MsG0580025532.01.T01 AT1G01260 31.169 231 150 3 3 225 7 236 1.77e-29 124
MsG0580025532.01.T01 AT1G01260 40.741 243 99 5 433 670 373 575 1.00e-41 160
MsG0580025532.01.T01 AT1G01260 31.169 231 150 3 3 225 7 236 1.77e-29 124
MsG0580025532.01.T01 AT2G46510 42.534 221 89 4 459 677 368 552 3.01e-41 159
MsG0580025532.01.T01 AT2G46510 33.476 233 143 4 4 225 8 239 2.85e-27 117
MsG0580025532.01.T01 AT4G16430 41.799 189 76 2 466 654 293 447 1.00e-37 147
MsG0580025532.01.T01 AT4G16430 29.348 184 120 4 45 225 50 226 7.65e-14 74.7
MsG0580025532.01.T01 AT4G00870 44.828 203 92 5 478 669 224 417 1.10e-35 140
MsG0580025532.01.T01 AT4G00870 31.148 183 98 4 44 225 34 189 3.89e-20 94.0
MsG0580025532.01.T01 AT4G09820 33.333 204 115 6 33 225 8 201 2.44e-26 114
MsG0580025532.01.T01 AT4G09820 31.373 153 74 3 490 642 360 481 2.13e-15 80.1
MsG0580025532.01.T01 AT1G63650 33.831 201 106 6 43 225 11 202 4.04e-23 104
MsG0580025532.01.T01 AT1G63650 26.455 189 131 3 489 669 401 589 1.44e-14 77.8
MsG0580025532.01.T01 AT1G63650 33.831 201 106 6 43 225 11 202 4.04e-23 104
MsG0580025532.01.T01 AT1G63650 26.455 189 131 3 489 669 401 589 1.44e-14 77.8
MsG0580025532.01.T01 AT1G63650 33.831 201 106 6 43 225 11 202 4.04e-23 104
MsG0580025532.01.T01 AT1G63650 26.455 189 131 3 489 669 401 589 1.44e-14 77.8
MsG0580025532.01.T01 AT5G41315 30.097 206 124 6 38 225 3 206 2.22e-20 96.3
MsG0580025532.01.T01 AT5G41315 25.758 198 130 4 487 669 435 630 1.07e-12 71.6
MsG0580025532.01.T01 AT5G41315 30.097 206 124 6 38 225 11 214 2.32e-20 96.3
MsG0580025532.01.T01 AT5G41315 25.758 198 130 4 487 669 443 638 9.78e-13 72.0
MsG0580025532.01.T01 AT5G41315 30.097 206 124 6 38 225 8 211 2.68e-20 95.9
MsG0580025532.01.T01 AT5G41315 25.758 198 130 4 487 669 440 635 1.16e-12 71.6
MsG0580025532.01.T01 AT4G00480 32.240 183 100 4 60 222 36 214 1.90e-19 92.8
MsG0580025532.01.T01 AT4G00480 32.240 183 100 4 60 222 36 214 2.22e-19 92.4
MsG0580025532.01.T01 AT4G00480 32.240 183 100 4 60 222 36 214 3.09e-19 92.4
MsG0580025532.01.T01 AT4G37850 32.973 185 92 6 471 640 123 290 1.20e-17 85.1
MsG0580025532.01.T01 AT4G37850 32.973 185 92 6 471 640 123 290 1.20e-17 85.1
MsG0580025532.01.T01 AT5G57150 30.526 190 110 6 494 674 55 231 2.20e-16 79.7
MsG0580025532.01.T01 AT2G28160 32.877 146 88 4 497 641 135 271 4.97e-16 80.1
MsG0580025532.01.T01 AT2G28160 32.877 146 88 4 497 641 135 271 6.59e-16 79.7
MsG0580025532.01.T01 AT5G57150 29.651 172 101 5 494 656 56 216 9.74e-16 77.4
MsG0580025532.01.T01 AT5G57150 29.651 172 101 5 494 656 56 216 1.37e-15 77.0
MsG0580025532.01.T01 AT5G57150 29.825 171 100 5 494 655 55 214 1.88e-15 76.6
MsG0580025532.01.T01 AT5G57150 29.545 176 104 5 494 660 56 220 2.01e-15 77.4
MsG0580025532.01.T01 AT2G22750 31.288 163 104 3 479 640 140 295 3.30e-14 74.7
MsG0580025532.01.T01 AT3G24140 25.592 211 132 6 475 663 177 384 3.62e-14 75.5
MsG0580025532.01.T01 AT2G22750 31.288 163 104 3 479 640 140 295 3.62e-14 74.7
MsG0580025532.01.T01 AT2G22750 30.488 164 104 4 479 640 136 291 3.68e-14 74.7
MsG0580025532.01.T01 AT2G22750 31.707 164 102 4 479 640 112 267 3.76e-14 74.3
MsG0580025532.01.T01 AT2G22750 31.707 164 102 4 479 640 112 267 4.21e-14 74.3
MsG0580025532.01.T01 AT3G24140 25.592 211 132 6 475 663 177 384 5.66e-14 74.7
MsG0580025532.01.T01 AT4G29930 32.867 143 78 3 494 635 55 180 6.58e-14 72.0
MsG0580025532.01.T01 AT3G26744 30.899 178 108 6 491 662 305 473 9.02e-14 74.7
MsG0580025532.01.T01 AT4G29930 32.168 143 76 3 494 635 55 177 2.11e-13 70.9
MsG0580025532.01.T01 AT4G29930 28.662 157 92 3 494 635 55 206 2.33e-13 71.2
MsG0580025532.01.T01 AT4G29930 28.662 157 92 3 494 635 55 206 2.33e-13 71.2
MsG0580025532.01.T01 AT3G26744 31.707 164 99 5 491 648 305 461 2.34e-13 73.6
MsG0580025532.01.T01 AT3G26744 31.707 164 99 5 491 648 305 461 2.34e-13 73.6
MsG0580025532.01.T01 AT3G26744 31.707 164 99 5 491 648 305 461 2.34e-13 73.6
MsG0580025532.01.T01 AT1G12860 30.769 169 90 4 491 648 265 417 2.69e-13 72.8
MsG0580025532.01.T01 AT1G12860 29.442 197 110 5 491 674 265 445 3.24e-13 72.8
MsG0580025532.01.T01 AT4G29930 32.168 143 76 3 494 635 55 177 3.26e-13 70.1
MsG0580025532.01.T01 AT4G29930 28.662 157 92 3 494 635 55 206 4.01e-13 70.5
MsG0580025532.01.T01 AT4G29930 44.000 75 42 0 495 569 56 130 8.59e-13 67.8
MsG0580025532.01.T01 AT2G16910 33.136 169 76 6 497 641 318 473 1.03e-12 71.6
MsG0580025532.01.T01 AT2G22770 26.486 185 120 4 487 659 123 303 5.24e-12 68.2
MsG0580025532.01.T01 AT2G22760 26.638 229 121 8 420 640 69 258 8.88e-12 67.0
MsG0580025532.01.T01 AT2G22760 28.780 205 99 8 420 616 69 234 9.46e-12 67.0
MsG0580025532.01.T01 AT5G65640 30.000 200 116 7 479 674 166 345 2.68e-11 66.2

Find 162 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATCGATGTTAAGATTAT+AGG 0.170893 5:+20077519 MsG0580025532.01.T01:CDS
CATTTCATTTCATGAATCTT+TGG 0.223803 5:+20075717 None:intergenic
ACAACAAGCAACCGTGAAAA+TGG 0.224565 5:+20077671 MsG0580025532.01.T01:CDS
TGATTCGAAGAGGGTTTATT+TGG 0.231042 5:-20077480 None:intergenic
AGTTCTTATGTTGCTAATAA+TGG 0.260796 5:+20076844 MsG0580025532.01.T01:CDS
CAACCTTCTTACGACTATTC+AGG 0.266356 5:+20075926 MsG0580025532.01.T01:CDS
GAAATGAATCTTTCTGATTA+TGG 0.280620 5:+20076748 MsG0580025532.01.T01:CDS
GATGGATAAAGCTTCACTTT+TGG 0.289543 5:+20077290 MsG0580025532.01.T01:CDS
CACAAAATCTCACCGGATTC+CGG 0.303867 5:-20076802 None:intergenic
AGGTTCTTCGTTACTTGGTT+GGG 0.304524 5:+20075946 MsG0580025532.01.T01:CDS
TATTCAGGTTCTTCGTTACT+TGG 0.315314 5:+20075941 MsG0580025532.01.T01:CDS
ACCATCGGCTGACGGTGTTT+TGG 0.319919 5:+20076315 MsG0580025532.01.T01:CDS
TGTTCTGTTGTTGGTGCTGC+TGG 0.321937 5:-20076588 None:intergenic
TTGAACATCCCCGACTTTAG+AGG 0.323506 5:-20077736 None:intergenic
AGAATGATCCTTCTTCGATT+TGG 0.325148 5:+20076467 MsG0580025532.01.T01:CDS
CCACCCGGCAGCAAGGTTAA+TGG 0.328981 5:+20077581 MsG0580025532.01.T01:CDS
TTCTTCTGTAACCGGATTAC+CGG 0.334316 5:-20076086 None:intergenic
TTTGGATCTTCTTGGCAGTT+AGG 0.342187 5:+20076424 MsG0580025532.01.T01:CDS
CACTGGCATGGTGCACTTCT+AGG 0.343448 5:-20077623 None:intergenic
TATTGTTATTGTTCTGTTGT+TGG 0.349299 5:-20076597 None:intergenic
CCTCTGATTTATCAACCTTA+TGG 0.351613 5:+20075780 MsG0580025532.01.T01:CDS
GGTTCCTCTCTTCCGTTTGC+CGG 0.358134 5:-20077177 None:intergenic
CTCCGGTGTTCTTGTTCAGC+AGG 0.359735 5:-20076031 None:intergenic
ACAGAACAATAACAATAATC+AGG 0.363674 5:+20076603 MsG0580025532.01.T01:CDS
TTATCCATCTTTGAAACATT+AGG 0.366548 5:-20077276 None:intergenic
TGGGGTGATGGTTACTATAA+AGG 0.374935 5:+20075965 MsG0580025532.01.T01:CDS
AAGGTTAATGGCAGCGTTAA+TGG 0.379124 5:+20077593 MsG0580025532.01.T01:CDS
TCGTTACTTGGTTGGGGTGA+TGG 0.379647 5:+20075953 MsG0580025532.01.T01:CDS
CAGGTTCTTCGTTACTTGGT+TGG 0.382764 5:+20075945 MsG0580025532.01.T01:CDS
TTGAAATTCTCTGGTGGTAC+TGG 0.385403 5:+20077048 MsG0580025532.01.T01:CDS
TGTTGGTGCTGCTGGTGACT+TGG 0.388845 5:-20076580 None:intergenic
TTATTGCTTCCTCTCGAATT+CGG 0.392691 5:-20076967 None:intergenic
TTCATTAATCTCCGGTAATC+CGG 0.396662 5:+20076075 MsG0580025532.01.T01:CDS
TCAGCTCCGGTGTGGTTAAC+CGG 0.398598 5:+20076214 MsG0580025532.01.T01:CDS
TCGAATTCGAATTTCTTCTC+TGG 0.399599 5:+20076871 MsG0580025532.01.T01:CDS
ACAGGAGATTCTTCTGTAAC+CGG 0.415426 5:-20076094 None:intergenic
TTAAAGCTTGAAGACGTTGT+TGG 0.415771 5:-20075862 None:intergenic
TGTTCCTAATGTTTCAAAGA+TGG 0.422462 5:+20077272 MsG0580025532.01.T01:CDS
CAACAAGCAACCGTGAAAAT+GGG 0.427408 5:+20077672 MsG0580025532.01.T01:CDS
GCGTCGAATTTGAAATTCTC+TGG 0.430033 5:+20077039 MsG0580025532.01.T01:CDS
TCAACAGAATCTCTAGCTTC+AGG 0.431024 5:-20076499 None:intergenic
GTTGTGGTGGCTGATGAGAC+TGG 0.431357 5:-20077434 None:intergenic
GTGGTTTGTGGTGGTTGTGA+CGG 0.435088 5:-20075815 None:intergenic
GGTGGTTGTGACGGTGGTGC+TGG 0.437264 5:-20075806 None:intergenic
TTGAATCCGGTGGTGGTTTG+TGG 0.438183 5:-20075827 None:intergenic
GAAGAGGGTTTATTTGGTAC+TGG 0.440122 5:-20077474 None:intergenic
TCAGTAACTTCTTCATCAAC+AGG 0.444377 5:-20076112 None:intergenic
TTCTCTGGTGGTACTGGTGG+TGG 0.450615 5:+20077054 MsG0580025532.01.T01:CDS
GGCTTCCTCCCTCTCTTCCT+CGG 0.451066 5:-20077156 None:intergenic
GAAAAGAAGCCGAGGAAGAG+AGG 0.453055 5:+20077147 MsG0580025532.01.T01:CDS
GAGGAAGAGAGGGAGGAAGC+CGG 0.453227 5:+20077158 MsG0580025532.01.T01:CDS
GTCAACGGAACTGGGCTGCC+TGG 0.453582 5:+20076175 MsG0580025532.01.T01:CDS
TGGTACTGGTGGTGGTGATT+CGG 0.453669 5:+20077062 MsG0580025532.01.T01:CDS
GAGAGTGTCTTGGTTGAATC+CGG 0.454531 5:-20075840 None:intergenic
TCCTGGTTCGAGTACTTTAA+CGG 0.455187 5:+20076666 MsG0580025532.01.T01:CDS
CGGTGGTGCTGGTGGCCATA+AGG 0.456488 5:-20075795 None:intergenic
TCGAAGGCGCAAAAGAAGTC+TGG 0.457045 5:+20075885 MsG0580025532.01.T01:CDS
ACAACAATGGGAACGGGAAT+GGG 0.462203 5:+20076926 MsG0580025532.01.T01:CDS
CGTTTGTTGAAGCCGGAATC+CGG 0.465479 5:+20076790 MsG0580025532.01.T01:CDS
TGGTGGTGATTCGGACCATT+CGG 0.468581 5:+20077071 MsG0580025532.01.T01:CDS
TGTTGTTGTTGCTGCTGTTG+TGG 0.469442 5:-20077450 None:intergenic
TGATTCGGACCATTCGGATC+TGG 0.469684 5:+20077077 MsG0580025532.01.T01:CDS
CGGCATTGTCCTCTAAAGTC+GGG 0.471070 5:+20077727 MsG0580025532.01.T01:CDS
AAAACTGAATCTAATAAAGA+TGG 0.474843 5:+20077357 MsG0580025532.01.T01:CDS
AACAACAATGGGAACGGGAA+TGG 0.482475 5:+20076925 MsG0580025532.01.T01:CDS
CCATTCGGATCTGGAGGCTT+CGG 0.482750 5:+20077086 MsG0580025532.01.T01:CDS
TAGGCTGGGATGCAATGATA+AGG 0.484555 5:+20077538 MsG0580025532.01.T01:CDS
CGCCCTCTCACAAGCTGAGA+GGG 0.484643 5:-20076251 None:intergenic
GGTTCTTCGTTACTTGGTTG+GGG 0.488569 5:+20075947 MsG0580025532.01.T01:CDS
TCTGGAGGCTTCGGTGGTGA+AGG 0.499262 5:+20077095 MsG0580025532.01.T01:CDS
AATGGGAACGGGAATGGGAA+TGG 0.501146 5:+20076931 MsG0580025532.01.T01:CDS
AGAGGAAGCAATAATGATGA+TGG 0.505617 5:+20076976 MsG0580025532.01.T01:CDS
AATTTCAAATTCGACGCCCC+TGG 0.511045 5:-20077033 None:intergenic
CGATGTTAAGATTATAGGCT+GGG 0.511425 5:+20077524 MsG0580025532.01.T01:CDS
GGCTTCGGTGGTGAAGGAGG+TGG 0.511799 5:+20077101 MsG0580025532.01.T01:CDS
AAAAGAAGCCGAGGAAGAGA+GGG 0.514449 5:+20077148 MsG0580025532.01.T01:CDS
CGCCCTCTCAGCTTGTGAGA+GGG 0.515362 5:+20076249 MsG0580025532.01.T01:CDS
CTGCCATTAACCTTGCTGCC+GGG 0.517345 5:-20077584 None:intergenic
AGCTTATTATAATTCAGCTC+CGG 0.519595 5:+20076201 MsG0580025532.01.T01:CDS
AGAGGGAGGAAGCCGGCAAA+CGG 0.519792 5:+20077165 MsG0580025532.01.T01:CDS
CTTGAAACATGAACAACACT+AGG 0.520830 5:-20076694 None:intergenic
GAACTTAATTCATTAATCTC+CGG 0.523787 5:+20076067 MsG0580025532.01.T01:CDS
ACGGGAATGGGAATGGAAAG+AGG 0.524874 5:+20076938 MsG0580025532.01.T01:CDS
AGGCTGGGATGCAATGATAA+GGG 0.527237 5:+20077539 MsG0580025532.01.T01:CDS
AGGAGAACAACAATGGGAAC+GGG 0.528523 5:+20076920 MsG0580025532.01.T01:CDS
GTCTTGGTTGAATCCGGTGG+TGG 0.529478 5:-20075834 None:intergenic
GCTGCCATTAACCTTGCTGC+CGG 0.530316 5:-20077585 None:intergenic
AGGATCATTCTCACCATGAT+GGG 0.531136 5:-20076455 None:intergenic
TCTGGTGTAATTGTTCCACC+AGG 0.531186 5:+20077015 MsG0580025532.01.T01:CDS
TCAGCAACGTTTGTTGAAGC+CGG 0.534264 5:+20076783 MsG0580025532.01.T01:CDS
TGTTGTTGCTGCTGTTGTGG+TGG 0.537319 5:-20077447 None:intergenic
AAGGATCATTCTCACCATGA+TGG 0.538289 5:-20076456 None:intergenic
CGACGATAACTCTTCAGTAA+TGG 0.538731 5:+20075742 MsG0580025532.01.T01:CDS
TTGCTGAGGAGAACAACAAT+GGG 0.545102 5:+20076914 MsG0580025532.01.T01:CDS
GACGTTGTTGGAGAGTGTCT+TGG 0.546035 5:-20075850 None:intergenic
TGGTTCGAGTACTTTAACGG+AGG 0.547059 5:+20076669 MsG0580025532.01.T01:CDS
AATCTTTCTGATTATGGTGG+TGG 0.549706 5:+20076754 MsG0580025532.01.T01:CDS
TCGTTAATCCAAATCGAAGA+AGG 0.550466 5:-20076475 None:intergenic
ATCATTTACCACAGACACAC+TGG 0.550984 5:-20077640 None:intergenic
TTCAAATTCGACGCCCCTGG+TGG 0.552724 5:-20077030 None:intergenic
TCGCCCTCTCAGCTTGTGAG+AGG 0.553021 5:+20076248 MsG0580025532.01.T01:CDS
AAATTCTCTGGTGGTACTGG+TGG 0.553450 5:+20077051 MsG0580025532.01.T01:CDS
GAACCTGAATAGTCGTAAGA+AGG 0.553990 5:-20075929 None:intergenic
TCGATGTTAAGATTATAGGC+TGG 0.555177 5:+20077523 MsG0580025532.01.T01:CDS
GTTTGTGGTGGTTGTGACGG+TGG 0.556522 5:-20075812 None:intergenic
GGAGGCTTCGGTGGTGAAGG+AGG 0.561351 5:+20077098 MsG0580025532.01.T01:CDS
ACGATGCAATTTGAAACTCC+TGG 0.564466 5:+20076649 MsG0580025532.01.T01:CDS
GAATTATAATAAGCTTGTCC+AGG 0.566444 5:-20076193 None:intergenic
GGTTGTGACGGTGGTGCTGG+TGG 0.566453 5:-20075803 None:intergenic
TTCGGATCTGGAGGCTTCGG+TGG 0.573741 5:+20077089 MsG0580025532.01.T01:CDS
ATTAGAGCTTGATTCGAAGA+GGG 0.573791 5:-20077489 None:intergenic
GAAGCCGGCAAACGGAAGAG+AGG 0.578591 5:+20077173 MsG0580025532.01.T01:CDS
CAACCACCACAAACCACCAC+CGG 0.580431 5:+20075821 MsG0580025532.01.T01:CDS
TGATGAAGAAGTTACTGATA+CGG 0.580523 5:+20076117 MsG0580025532.01.T01:CDS
GCGGCATTGTCCTCTAAAGT+CGG 0.582204 5:+20077726 MsG0580025532.01.T01:CDS
AGAAGCCGAGGAAGAGAGGG+AGG 0.582977 5:+20077151 MsG0580025532.01.T01:CDS
ACAGTTAGTTTCCGTTGCTG+AGG 0.584195 5:+20076900 MsG0580025532.01.T01:CDS
TCGCCCTCTCACAAGCTGAG+AGG 0.584834 5:-20076252 None:intergenic
CGTCTTCAAGCTTTAATCGA+AGG 0.585450 5:+20075869 MsG0580025532.01.T01:CDS
CACTCAGGAGCAGCTTCGAG+CGG 0.590406 5:+20077707 MsG0580025532.01.T01:CDS
TCAGCTTCAACATGATTCAA+CGG 0.591097 5:-20077198 None:intergenic
CAGAACAATAACAATAATCA+GGG 0.591184 5:+20076604 MsG0580025532.01.T01:CDS
AATCCGGTGGTGGTTTGTGG+TGG 0.592017 5:-20075824 None:intergenic
GTTGCTGAGGAGAACAACAA+TGG 0.596228 5:+20076913 MsG0580025532.01.T01:CDS
CCATTAACCTTGCTGCCGGG+TGG 0.597585 5:-20077581 None:intergenic
TGGTGTAATTGTTCCACCAG+GGG 0.598619 5:+20077017 MsG0580025532.01.T01:CDS
CTGGTGTAATTGTTCCACCA+GGG 0.599733 5:+20077016 MsG0580025532.01.T01:CDS
ACCAAAACACAAAATCTCAC+CGG 0.600817 5:-20076809 None:intergenic
CGATAACTCTTCAGTAATGG+AGG 0.601389 5:+20075745 MsG0580025532.01.T01:CDS
TCCGTTAAAGTACTCGAACC+AGG 0.602105 5:-20076667 None:intergenic
ATTGTTGTTCTCCTCAGCAA+CGG 0.603161 5:-20076911 None:intergenic
TTCGGACCATTCGGATCTGG+AGG 0.603525 5:+20077080 MsG0580025532.01.T01:CDS
GGTGGATAGTAGTCGTGTGG+TGG 0.606483 5:+20077119 MsG0580025532.01.T01:CDS
GAGGAGAACAACAATGGGAA+CGG 0.611347 5:+20076919 MsG0580025532.01.T01:CDS
TTAGGTAATTCTGCCCATCA+TGG 0.611875 5:+20076442 MsG0580025532.01.T01:CDS
TCCAAAACACCGTCAGCCGA+TGG 0.615737 5:-20076316 None:intergenic
GATTAGAGCTTGATTCGAAG+AGG 0.620386 5:-20077490 None:intergenic
TCAGCTCCGGTTAACCACAC+CGG 0.622205 5:-20076220 None:intergenic
GCGAGACAAGGTCAAGAACA+TGG 0.625791 5:+20076271 MsG0580025532.01.T01:CDS
AACAAGCAACCGTGAAAATG+GGG 0.625969 5:+20077673 MsG0580025532.01.T01:CDS
GCTTGTGAGAGGGCGAGACA+AGG 0.630681 5:+20076259 MsG0580025532.01.T01:CDS
TCGAATTTGAAATTCTCTGG+TGG 0.634544 5:+20077042 MsG0580025532.01.T01:CDS
ATTATAATTCAGCTCCGGTG+TGG 0.637766 5:+20076206 MsG0580025532.01.T01:CDS
CACCTGCTGAACAAGAACAC+CGG 0.639706 5:+20076029 MsG0580025532.01.T01:CDS
GGCATTGTCCTCTAAAGTCG+GGG 0.642951 5:+20077728 MsG0580025532.01.T01:CDS
GCGTGTATACCATCGGCTGA+CGG 0.644460 5:+20076307 MsG0580025532.01.T01:CDS
GACGCTGGCGTGTATACCAT+CGG 0.650932 5:+20076300 MsG0580025532.01.T01:CDS
TGAATCATGTTGAAGCTGAG+AGG 0.655301 5:+20077202 MsG0580025532.01.T01:CDS
AGGAGATCACCGAATTCGAG+AGG 0.656826 5:+20076958 MsG0580025532.01.T01:CDS
AGTGTCTTGGTTGAATCCGG+TGG 0.657627 5:-20075837 None:intergenic
TTACCACAGACACACTGGCA+TGG 0.658103 5:-20077635 None:intergenic
ATGAATCTTTCTGATTATGG+TGG 0.662194 5:+20076751 MsG0580025532.01.T01:CDS
GCACCATGCCAGTGTGTCTG+TGG 0.666701 5:+20077632 MsG0580025532.01.T01:CDS
AGGTTGCCAGAAAATAGCGT+AGG 0.667613 5:-20075909 None:intergenic
TAAGGTTGATAAATCAGAGG+AGG 0.672550 5:-20075777 None:intergenic
CCATAAGGTTGATAAATCAG+AGG 0.672761 5:-20075780 None:intergenic
AGAACATGGTATACAGACGC+TGG 0.675420 5:+20076285 MsG0580025532.01.T01:CDS
GGAGGTGGATAGTAGTCGTG+TGG 0.676666 5:+20077116 MsG0580025532.01.T01:CDS
CCGAAGCCTCCAGATCCGAA+TGG 0.681912 5:-20077086 None:intergenic
TCTTGTTACAACAACAACAA+CGG 0.685083 5:+20076531 MsG0580025532.01.T01:CDS
TGGAGCCCGAAAAGAAGCCG+AGG 0.695389 5:+20077139 MsG0580025532.01.T01:CDS
AAGAAGTTACTGATACGGAG+TGG 0.724771 5:+20076122 MsG0580025532.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACAATAATTTTGATTT+TGG + Chr5:20076406-20076425 MsG0580025532.01.T01:CDS 10.0%
!! AAAACTGAATCTAATAAAGA+TGG + Chr5:20077357-20077376 MsG0580025532.01.T01:CDS 20.0%
!!! TAATCAAAGTTTCTTTTCTA+AGG + Chr5:20076726-20076745 MsG0580025532.01.T01:CDS 20.0%
! ACAGAACAATAACAATAATC+AGG + Chr5:20076603-20076622 MsG0580025532.01.T01:CDS 25.0%
! AGTTCTTATGTTGCTAATAA+TGG + Chr5:20076844-20076863 MsG0580025532.01.T01:CDS 25.0%
! CAGAACAATAACAATAATCA+GGG + Chr5:20076604-20076623 MsG0580025532.01.T01:CDS 25.0%
! GAAATGAATCTTTCTGATTA+TGG + Chr5:20076748-20076767 MsG0580025532.01.T01:CDS 25.0%
! GAACTTAATTCATTAATCTC+CGG + Chr5:20076067-20076086 MsG0580025532.01.T01:CDS 25.0%
! GATATCGATGTTAAGATTAT+AGG + Chr5:20077519-20077538 MsG0580025532.01.T01:CDS 25.0%
!! TATTGTTATTGTTCTGTTGT+TGG - Chr5:20076600-20076619 None:intergenic 25.0%
!!! ATTTTGATTTTGGATCTTCT+TGG + Chr5:20076416-20076435 MsG0580025532.01.T01:CDS 25.0%
!!! TTATCCATCTTTGAAACATT+AGG - Chr5:20077279-20077298 None:intergenic 25.0%
AGCTTATTATAATTCAGCTC+CGG + Chr5:20076201-20076220 MsG0580025532.01.T01:CDS 30.0%
ATGAATCTTTCTGATTATGG+TGG + Chr5:20076751-20076770 MsG0580025532.01.T01:CDS 30.0%
GAATTATAATAAGCTTGTCC+AGG - Chr5:20076196-20076215 None:intergenic 30.0%
TCTTGTTACAACAACAACAA+CGG + Chr5:20076531-20076550 MsG0580025532.01.T01:CDS 30.0%
TGATGAAGAAGTTACTGATA+CGG + Chr5:20076117-20076136 MsG0580025532.01.T01:CDS 30.0%
TGTTCCTAATGTTTCAAAGA+TGG + Chr5:20077272-20077291 MsG0580025532.01.T01:CDS 30.0%
!! ATGGATAAAGCTTCACTTTT+GGG + Chr5:20077291-20077310 MsG0580025532.01.T01:CDS 30.0%
AATCTTTCTGATTATGGTGG+TGG + Chr5:20076754-20076773 MsG0580025532.01.T01:CDS 35.0%
ACCAAAACACAAAATCTCAC+CGG - Chr5:20076812-20076831 None:intergenic 35.0%
AGAATGATCCTTCTTCGATT+TGG + Chr5:20076467-20076486 MsG0580025532.01.T01:CDS 35.0%
AGAGGAAGCAATAATGATGA+TGG + Chr5:20076976-20076995 MsG0580025532.01.T01:CDS 35.0%
CCTCTGATTTATCAACCTTA+TGG + Chr5:20075780-20075799 MsG0580025532.01.T01:CDS 35.0%
CGATGTTAAGATTATAGGCT+GGG + Chr5:20077524-20077543 MsG0580025532.01.T01:CDS 35.0%
CTTGAAACATGAACAACACT+AGG - Chr5:20076697-20076716 None:intergenic 35.0%
TCAGCTTCAACATGATTCAA+CGG - Chr5:20077201-20077220 None:intergenic 35.0%
TCAGTAACTTCTTCATCAAC+AGG - Chr5:20076115-20076134 None:intergenic 35.0%
TCGAATTCGAATTTCTTCTC+TGG + Chr5:20076871-20076890 MsG0580025532.01.T01:CDS 35.0%
TCGATGTTAAGATTATAGGC+TGG + Chr5:20077523-20077542 MsG0580025532.01.T01:CDS 35.0%
TCGTTAATCCAAATCGAAGA+AGG - Chr5:20076478-20076497 None:intergenic 35.0%
TGATTCGAAGAGGGTTTATT+TGG - Chr5:20077483-20077502 None:intergenic 35.0%
TTAAAGCTTGAAGACGTTGT+TGG - Chr5:20075865-20075884 None:intergenic 35.0%
TTATTGCTTCCTCTCGAATT+CGG - Chr5:20076970-20076989 None:intergenic 35.0%
TTCATTAATCTCCGGTAATC+CGG + Chr5:20076075-20076094 MsG0580025532.01.T01:CDS 35.0%
! ATTAGAGCTTGATTCGAAGA+GGG - Chr5:20077492-20077511 None:intergenic 35.0%
! GATGGATAAAGCTTCACTTT+TGG + Chr5:20077290-20077309 MsG0580025532.01.T01:CDS 35.0%
! GGAATGCTATCTTTTACTTC+TGG + Chr5:20076997-20077016 MsG0580025532.01.T01:CDS 35.0%
! TATTCAGGTTCTTCGTTACT+TGG + Chr5:20075941-20075960 MsG0580025532.01.T01:CDS 35.0%
! TCGAATTTGAAATTCTCTGG+TGG + Chr5:20077042-20077061 MsG0580025532.01.T01:CDS 35.0%
!! CCATAAGGTTGATAAATCAG+AGG - Chr5:20075783-20075802 None:intergenic 35.0%
!! GTTCTCTAAGAACTTTTCTC+CGG - Chr5:20076051-20076070 None:intergenic 35.0%
!! TAAGGTTGATAAATCAGAGG+AGG - Chr5:20075780-20075799 None:intergenic 35.0%
AACAAGCAACCGTGAAAATG+GGG + Chr5:20077673-20077692 MsG0580025532.01.T01:CDS 40.0%
AAGAAGTTACTGATACGGAG+TGG + Chr5:20076122-20076141 MsG0580025532.01.T01:CDS 40.0%
AAGGATCATTCTCACCATGA+TGG - Chr5:20076459-20076478 None:intergenic 40.0%
AAGGTTAATGGCAGCGTTAA+TGG + Chr5:20077593-20077612 MsG0580025532.01.T01:CDS 40.0%
ACAACAAGCAACCGTGAAAA+TGG + Chr5:20077671-20077690 MsG0580025532.01.T01:CDS 40.0%
ACAGGAGATTCTTCTGTAAC+CGG - Chr5:20076097-20076116 None:intergenic 40.0%
AGGATCATTCTCACCATGAT+GGG - Chr5:20076458-20076477 None:intergenic 40.0%
AGGTTCTTCGTTACTTGGTT+GGG + Chr5:20075946-20075965 MsG0580025532.01.T01:CDS 40.0%
ATCATTTACCACAGACACAC+TGG - Chr5:20077643-20077662 None:intergenic 40.0%
ATGCAGTAAGAAAAACCACC+CGG + Chr5:20077566-20077585 MsG0580025532.01.T01:CDS 40.0%
ATTATAATTCAGCTCCGGTG+TGG + Chr5:20076206-20076225 MsG0580025532.01.T01:CDS 40.0%
CAACAAGCAACCGTGAAAAT+GGG + Chr5:20077672-20077691 MsG0580025532.01.T01:CDS 40.0%
CAACCTTCTTACGACTATTC+AGG + Chr5:20075926-20075945 MsG0580025532.01.T01:CDS 40.0%
CGACGATAACTCTTCAGTAA+TGG + Chr5:20075742-20075761 MsG0580025532.01.T01:CDS 40.0%
CGATAACTCTTCAGTAATGG+AGG + Chr5:20075745-20075764 MsG0580025532.01.T01:CDS 40.0%
GAACCTGAATAGTCGTAAGA+AGG - Chr5:20075932-20075951 None:intergenic 40.0%
GAAGAGGGTTTATTTGGTAC+TGG - Chr5:20077477-20077496 None:intergenic 40.0%
TGAATCATGTTGAAGCTGAG+AGG + Chr5:20077202-20077221 MsG0580025532.01.T01:CDS 40.0%
TTAGGTAATTCTGCCCATCA+TGG + Chr5:20076442-20076461 MsG0580025532.01.T01:CDS 40.0%
TTCTTCTGTAACCGGATTAC+CGG - Chr5:20076089-20076108 None:intergenic 40.0%
TTGAAATTCTCTGGTGGTAC+TGG + Chr5:20077048-20077067 MsG0580025532.01.T01:CDS 40.0%
TTGCTGAGGAGAACAACAAT+GGG + Chr5:20076914-20076933 MsG0580025532.01.T01:CDS 40.0%
TTTGGATCTTCTTGGCAGTT+AGG + Chr5:20076424-20076443 MsG0580025532.01.T01:CDS 40.0%
! AAAACGACTCCCCATTTTCA+CGG - Chr5:20077685-20077704 None:intergenic 40.0%
! ACGATGCAATTTGAAACTCC+TGG + Chr5:20076649-20076668 MsG0580025532.01.T01:CDS 40.0%
! AGTCTTTTGTCAACGGAACT+GGG + Chr5:20076167-20076186 MsG0580025532.01.T01:CDS 40.0%
! ATGACGCAGTCTTTTGTCAA+CGG + Chr5:20076160-20076179 MsG0580025532.01.T01:CDS 40.0%
! ATTGTTGTTCTCCTCAGCAA+CGG - Chr5:20076914-20076933 None:intergenic 40.0%
! CGTCTTCAAGCTTTAATCGA+AGG + Chr5:20075869-20075888 MsG0580025532.01.T01:CDS 40.0%
! GATTAGAGCTTGATTCGAAG+AGG - Chr5:20077493-20077512 None:intergenic 40.0%
! GCGTCGAATTTGAAATTCTC+TGG + Chr5:20077039-20077058 MsG0580025532.01.T01:CDS 40.0%
! GGTGGTTTTTCTTACTGCAT+TGG - Chr5:20077566-20077585 None:intergenic 40.0%
! TCAACAGAATCTCTAGCTTC+AGG - Chr5:20076502-20076521 None:intergenic 40.0%
! TCCGGTGAGATTTTGTGTTT+TGG + Chr5:20076808-20076827 MsG0580025532.01.T01:CDS 40.0%
! TCCTGGTTCGAGTACTTTAA+CGG + Chr5:20076666-20076685 MsG0580025532.01.T01:CDS 40.0%
! TGGGGTGATGGTTACTATAA+AGG + Chr5:20075965-20075984 MsG0580025532.01.T01:CDS 40.0%
AAAAGAAGCCGAGGAAGAGA+GGG + Chr5:20077148-20077167 MsG0580025532.01.T01:CDS 45.0%
AACAACAATGGGAACGGGAA+TGG + Chr5:20076925-20076944 MsG0580025532.01.T01:CDS 45.0%
AATTTCAAATTCGACGCCCC+TGG - Chr5:20077036-20077055 None:intergenic 45.0%
ACAACAATGGGAACGGGAAT+GGG + Chr5:20076926-20076945 MsG0580025532.01.T01:CDS 45.0%
AGAACATGGTATACAGACGC+TGG + Chr5:20076285-20076304 MsG0580025532.01.T01:CDS 45.0%
AGGAGAACAACAATGGGAAC+GGG + Chr5:20076920-20076939 MsG0580025532.01.T01:CDS 45.0%
AGGCTGGGATGCAATGATAA+GGG + Chr5:20077539-20077558 MsG0580025532.01.T01:CDS 45.0%
AGGTTGCCAGAAAATAGCGT+AGG - Chr5:20075912-20075931 None:intergenic 45.0%
CACAAAATCTCACCGGATTC+CGG - Chr5:20076805-20076824 None:intergenic 45.0%
CAGGTTCTTCGTTACTTGGT+TGG + Chr5:20075945-20075964 MsG0580025532.01.T01:CDS 45.0%
CTGGTGTAATTGTTCCACCA+GGG + Chr5:20077016-20077035 MsG0580025532.01.T01:CDS 45.0%
GAGGAGAACAACAATGGGAA+CGG + Chr5:20076919-20076938 MsG0580025532.01.T01:CDS 45.0%
GGTTCTTCGTTACTTGGTTG+GGG + Chr5:20075947-20075966 MsG0580025532.01.T01:CDS 45.0%
GTTGCTGAGGAGAACAACAA+TGG + Chr5:20076913-20076932 MsG0580025532.01.T01:CDS 45.0%
TAGGCTGGGATGCAATGATA+AGG + Chr5:20077538-20077557 MsG0580025532.01.T01:CDS 45.0%
TCTGGTGTAATTGTTCCACC+AGG + Chr5:20077015-20077034 MsG0580025532.01.T01:CDS 45.0%
TGGTGTAATTGTTCCACCAG+GGG + Chr5:20077017-20077036 MsG0580025532.01.T01:CDS 45.0%
TGGTTCGAGTACTTTAACGG+AGG + Chr5:20076669-20076688 MsG0580025532.01.T01:CDS 45.0%
TTGAACATCCCCGACTTTAG+AGG - Chr5:20077739-20077758 None:intergenic 45.0%
! AAATTCTCTGGTGGTACTGG+TGG + Chr5:20077051-20077070 MsG0580025532.01.T01:CDS 45.0%
! ACAGTTAGTTTCCGTTGCTG+AGG + Chr5:20076900-20076919 MsG0580025532.01.T01:CDS 45.0%
! CAGTCTTTTGTCAACGGAAC+TGG + Chr5:20076166-20076185 MsG0580025532.01.T01:CDS 45.0%
! TCAGCAACGTTTGTTGAAGC+CGG + Chr5:20076783-20076802 MsG0580025532.01.T01:CDS 45.0%
! TCCGTTAAAGTACTCGAACC+AGG - Chr5:20076670-20076689 None:intergenic 45.0%
! TCTCTTCCTCGGCTTCTTTT+CGG - Chr5:20077148-20077167 None:intergenic 45.0%
! TGTTGTTGTTGCTGCTGTTG+TGG - Chr5:20077453-20077472 None:intergenic 45.0%
!! GAGAGTGTCTTGGTTGAATC+CGG - Chr5:20075843-20075862 None:intergenic 45.0%
!! TCTGGACCTACGCTATTTTC+TGG + Chr5:20075903-20075922 MsG0580025532.01.T01:CDS 45.0%
AATGGGAACGGGAATGGGAA+TGG + Chr5:20076931-20076950 MsG0580025532.01.T01:CDS 50.0%
ACGGGAATGGGAATGGAAAG+AGG + Chr5:20076938-20076957 MsG0580025532.01.T01:CDS 50.0%
AGGAGATCACCGAATTCGAG+AGG + Chr5:20076958-20076977 MsG0580025532.01.T01:CDS 50.0%
AGTGTCTTGGTTGAATCCGG+TGG - Chr5:20075840-20075859 None:intergenic 50.0%
CACCTGCTGAACAAGAACAC+CGG + Chr5:20076029-20076048 MsG0580025532.01.T01:CDS 50.0%
GAAAAGAAGCCGAGGAAGAG+AGG + Chr5:20077147-20077166 MsG0580025532.01.T01:CDS 50.0%
GCGAGACAAGGTCAAGAACA+TGG + Chr5:20076271-20076290 MsG0580025532.01.T01:CDS 50.0%
TCGTTACTTGGTTGGGGTGA+TGG + Chr5:20075953-20075972 MsG0580025532.01.T01:CDS 50.0%
TGTTGTTGCTGCTGTTGTGG+TGG - Chr5:20077450-20077469 None:intergenic 50.0%
TTACCACAGACACACTGGCA+TGG - Chr5:20077638-20077657 None:intergenic 50.0%
! CGTTTGTTGAAGCCGGAATC+CGG + Chr5:20076790-20076809 MsG0580025532.01.T01:CDS 50.0%
! CTCTTCCTCGGCTTCTTTTC+GGG - Chr5:20077147-20077166 None:intergenic 50.0%
! GTGGTTTGTGGTGGTTGTGA+CGG - Chr5:20075818-20075837 None:intergenic 50.0%
! TCGAAGGCGCAAAAGAAGTC+TGG + Chr5:20075885-20075904 MsG0580025532.01.T01:CDS 50.0%
! TGATTCGGACCATTCGGATC+TGG + Chr5:20077077-20077096 MsG0580025532.01.T01:CDS 50.0%
! TGGTGGTGATTCGGACCATT+CGG + Chr5:20077071-20077090 MsG0580025532.01.T01:CDS 50.0%
! TTGAATCCGGTGGTGGTTTG+TGG - Chr5:20075830-20075849 None:intergenic 50.0%
!! CGGCATTGTCCTCTAAAGTC+GGG + Chr5:20077727-20077746 MsG0580025532.01.T01:CDS 50.0%
!! GACGTTGTTGGAGAGTGTCT+TGG - Chr5:20075853-20075872 None:intergenic 50.0%
!! GCGGCATTGTCCTCTAAAGT+CGG + Chr5:20077726-20077745 MsG0580025532.01.T01:CDS 50.0%
!! GGCATTGTCCTCTAAAGTCG+GGG + Chr5:20077728-20077747 MsG0580025532.01.T01:CDS 50.0%
!! TGGTACTGGTGGTGGTGATT+CGG + Chr5:20077062-20077081 MsG0580025532.01.T01:CDS 50.0%
!! TGTTCTGTTGTTGGTGCTGC+TGG - Chr5:20076591-20076610 None:intergenic 50.0%
!!! GGGGAGTCGTTTTTACACTC+AGG + Chr5:20077692-20077711 MsG0580025532.01.T01:CDS 50.0%
AGAAAAACCACCCGGCAGCA+AGG + Chr5:20077574-20077593 MsG0580025532.01.T01:CDS 55.0%
CAACCACCACAAACCACCAC+CGG + Chr5:20075821-20075840 MsG0580025532.01.T01:CDS 55.0%
CACTGGCATGGTGCACTTCT+AGG - Chr5:20077626-20077645 None:intergenic 55.0%
CCATTCGGATCTGGAGGCTT+CGG + Chr5:20077086-20077105 MsG0580025532.01.T01:CDS 55.0%
CTCCGGTGTTCTTGTTCAGC+AGG - Chr5:20076034-20076053 None:intergenic 55.0%
CTGCCATTAACCTTGCTGCC+GGG - Chr5:20077587-20077606 None:intergenic 55.0%
GACGCTGGCGTGTATACCAT+CGG + Chr5:20076300-20076319 MsG0580025532.01.T01:CDS 55.0%
GCTGCCATTAACCTTGCTGC+CGG - Chr5:20077588-20077607 None:intergenic 55.0%
GGAGGTGGATAGTAGTCGTG+TGG + Chr5:20077116-20077135 MsG0580025532.01.T01:CDS 55.0%
GGTGGATAGTAGTCGTGTGG+TGG + Chr5:20077119-20077138 MsG0580025532.01.T01:CDS 55.0%
GGTTCCTCTCTTCCGTTTGC+CGG - Chr5:20077180-20077199 None:intergenic 55.0%
GTCTTGGTTGAATCCGGTGG+TGG - Chr5:20075837-20075856 None:intergenic 55.0%
GTTGTGGTGGCTGATGAGAC+TGG - Chr5:20077437-20077456 None:intergenic 55.0%
GTTTGTGGTGGTTGTGACGG+TGG - Chr5:20075815-20075834 None:intergenic 55.0%
TCAGCTCCGGTGTGGTTAAC+CGG + Chr5:20076214-20076233 MsG0580025532.01.T01:CDS 55.0%
TCAGCTCCGGTTAACCACAC+CGG - Chr5:20076223-20076242 None:intergenic 55.0%
TCCAAAACACCGTCAGCCGA+TGG - Chr5:20076319-20076338 None:intergenic 55.0%
TTCAAATTCGACGCCCCTGG+TGG - Chr5:20077033-20077052 None:intergenic 55.0%
TTCGGACCATTCGGATCTGG+AGG + Chr5:20077080-20077099 MsG0580025532.01.T01:CDS 55.0%
! AATCCGGTGGTGGTTTGTGG+TGG - Chr5:20075827-20075846 None:intergenic 55.0%
! GAGGGCGAGATTTTCAGCTC+CGG - Chr5:20076236-20076255 None:intergenic 55.0%
! GCGTGTATACCATCGGCTGA+CGG + Chr5:20076307-20076326 MsG0580025532.01.T01:CDS 55.0%
!! ACCATCGGCTGACGGTGTTT+TGG + Chr5:20076315-20076334 MsG0580025532.01.T01:CDS 55.0%
!! TGTTGGTGCTGCTGGTGACT+TGG - Chr5:20076583-20076602 None:intergenic 55.0%
!! TTCTCTGGTGGTACTGGTGG+TGG + Chr5:20077054-20077073 MsG0580025532.01.T01:CDS 55.0%
!!! GCTGACGGTGTTTTGGAGCT+TGG + Chr5:20076322-20076341 MsG0580025532.01.T01:CDS 55.0%
AGAAGCCGAGGAAGAGAGGG+AGG + Chr5:20077151-20077170 MsG0580025532.01.T01:CDS 60.0%
AGAGGGAGGAAGCCGGCAAA+CGG + Chr5:20077165-20077184 MsG0580025532.01.T01:CDS 60.0%
CACTCAGGAGCAGCTTCGAG+CGG + Chr5:20077707-20077726 MsG0580025532.01.T01:CDS 60.0%
CCACCCGGCAGCAAGGTTAA+TGG + Chr5:20077581-20077600 MsG0580025532.01.T01:CDS 60.0%
CCATTAACCTTGCTGCCGGG+TGG - Chr5:20077584-20077603 None:intergenic 60.0%
CCGAAGCCTCCAGATCCGAA+TGG - Chr5:20077089-20077108 None:intergenic 60.0%
CGCCCTCTCACAAGCTGAGA+GGG - Chr5:20076254-20076273 None:intergenic 60.0%
CGCCCTCTCAGCTTGTGAGA+GGG + Chr5:20076249-20076268 MsG0580025532.01.T01:CDS 60.0%
GAAGCCGGCAAACGGAAGAG+AGG + Chr5:20077173-20077192 MsG0580025532.01.T01:CDS 60.0%
GAGGAAGAGAGGGAGGAAGC+CGG + Chr5:20077158-20077177 MsG0580025532.01.T01:CDS 60.0%
GCACCATGCCAGTGTGTCTG+TGG + Chr5:20077632-20077651 MsG0580025532.01.T01:CDS 60.0%
GCTTGTGAGAGGGCGAGACA+AGG + Chr5:20076259-20076278 MsG0580025532.01.T01:CDS 60.0%
GGCTTCCTCCCTCTCTTCCT+CGG - Chr5:20077159-20077178 None:intergenic 60.0%
TCGCCCTCTCACAAGCTGAG+AGG - Chr5:20076255-20076274 None:intergenic 60.0%
TCGCCCTCTCAGCTTGTGAG+AGG + Chr5:20076248-20076267 MsG0580025532.01.T01:CDS 60.0%
TCTGGAGGCTTCGGTGGTGA+AGG + Chr5:20077095-20077114 MsG0580025532.01.T01:CDS 60.0%
TGGAGCCCGAAAAGAAGCCG+AGG + Chr5:20077139-20077158 MsG0580025532.01.T01:CDS 60.0%
TTCGGATCTGGAGGCTTCGG+TGG + Chr5:20077089-20077108 MsG0580025532.01.T01:CDS 60.0%
GGAGGCTTCGGTGGTGAAGG+AGG + Chr5:20077098-20077117 MsG0580025532.01.T01:CDS 65.0%
GGCTTCGGTGGTGAAGGAGG+TGG + Chr5:20077101-20077120 MsG0580025532.01.T01:CDS 65.0%
GGTGGTTGTGACGGTGGTGC+TGG - Chr5:20075809-20075828 None:intergenic 65.0%
GTCAACGGAACTGGGCTGCC+TGG + Chr5:20076175-20076194 MsG0580025532.01.T01:CDS 65.0%
! GGTTGTGACGGTGGTGCTGG+TGG - Chr5:20075806-20075825 None:intergenic 65.0%
!! CGGTGGTGCTGGTGGCCATA+AGG - Chr5:20075798-20075817 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 20075728 20077761 20075728 ID=MsG0580025532.01;Name=MsG0580025532.01
Chr5 mRNA 20075728 20077761 20075728 ID=MsG0580025532.01.T01;Parent=MsG0580025532.01;Name=MsG0580025532.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|677
Chr5 exon 20075728 20077761 20075728 ID=MsG0580025532.01.T01:exon:22931;Parent=MsG0580025532.01.T01
Chr5 CDS 20075728 20077761 20075728 ID=MsG0580025532.01.T01:cds;Parent=MsG0580025532.01.T01
Gene Sequence

>MsG0580025532.01.T01

ATGAATCTTTGGAGCGACGATAACTCTTCAGTAATGGAGGCTTTCATGACCTCCTCTGATTTATCAACCTTATGGCCACCAGCACCACCGTCACAACCACCACAAACCACCACCGGATTCAACCAAGACACTCTCCAACAACGTCTTCAAGCTTTAATCGAAGGCGCAAAAGAAGTCTGGACCTACGCTATTTTCTGGCAACCTTCTTACGACTATTCAGGTTCTTCGTTACTTGGTTGGGGTGATGGTTACTATAAAGGCGAAGAAGACAAAACAAAAGCGAAGAAATCAAAAGTTACTTCACCTGCTGAACAAGAACACCGGAGAAAAGTTCTTAGAGAACTTAATTCATTAATCTCCGGTAATCCGGTTACAGAAGAATCTCCTGTTGATGAAGAAGTTACTGATACGGAGTGGTTCTTTTTAGTTTCTATGACGCAGTCTTTTGTCAACGGAACTGGGCTGCCTGGACAAGCTTATTATAATTCAGCTCCGGTGTGGTTAACCGGAGCTGAAAATCTCGCCCTCTCAGCTTGTGAGAGGGCGAGACAAGGTCAAGAACATGGTATACAGACGCTGGCGTGTATACCATCGGCTGACGGTGTTTTGGAGCTTGGATCTACTGAGTTGATTTATCAGAATAATGATTTGATGAATAAAGTGAAGATGCTTTTCAATTTTAACAATAATTTTGATTTTGGATCTTCTTGGCAGTTAGGTAATTCTGCCCATCATGGTGAGAATGATCCTTCTTCGATTTGGATTAACGATCCTGAAGCTAGAGATTCTGTTGATAATAATTCTCTTGTTACAACAACAACAACGGCAGCAACAAATGCTTCAATTTCAATTCCAAGTCACCAGCAGCACCAACAACAGAACAATAACAATAATCAGGGTTTGAGTGTGAGTGTGACGAAGACGATGCAATTTGAAACTCCTGGTTCGAGTACTTTAACGGAGGTTCCTAGTGTTGTTCATGTTTCAAGCAAGCAGAATAATCAAAGTTTCTTTTCTAAGGAAATGAATCTTTCTGATTATGGTGGTGGTAACAATCAGCAACGTTTGTTGAAGCCGGAATCCGGTGAGATTTTGTGTTTTGGTGAGAGTAAAAAGAGTTCTTATGTTGCTAATAATGGAAACTCGAATTCGAATTTCTTCTCTGGTCAATCACAGTTAGTTTCCGTTGCTGAGGAGAACAACAATGGGAACGGGAATGGGAATGGAAAGAGGAGATCACCGAATTCGAGAGGAAGCAATAATGATGATGGAATGCTATCTTTTACTTCTGGTGTAATTGTTCCACCAGGGGCGTCGAATTTGAAATTCTCTGGTGGTACTGGTGGTGGTGATTCGGACCATTCGGATCTGGAGGCTTCGGTGGTGAAGGAGGTGGATAGTAGTCGTGTGGTGGAGCCCGAAAAGAAGCCGAGGAAGAGAGGGAGGAAGCCGGCAAACGGAAGAGAGGAACCGTTGAATCATGTTGAAGCTGAGAGGCAAAGAAGAGAGAAGCTGAATCAAAGATTCTATGCACTTCGAGCAGTTGTTCCTAATGTTTCAAAGATGGATAAAGCTTCACTTTTGGGTGATGCTATATCTTACATTACTGAGTTGAAAACAAAGCTTCAGAAAACTGAATCTAATAAAGATGGATTAGAAAAGCAACTTGATGCGATGAAGAATGAGATTCAGAAAATCAACGAAAACCAGTCTCATCAGCCACCACAACAGCAGCAACAACAACAGCCAGTACCAAATAAACCCTCTTCGAATCAAGCTCTAATCGATTTAGATATCGATGTTAAGATTATAGGCTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCGGCAGCAAGGTTAATGGCAGCGTTAATGGAGCTTGACCTAGAAGTGCACCATGCCAGTGTGTCTGTGGTAAATGATTTGATGATACAACAAGCAACCGTGAAAATGGGGAGTCGTTTTTACACTCAGGAGCAGCTTCGAGCGGCATTGTCCTCTAAAGTCGGGGATGTTCAATAA

Protein sequence

>MsG0580025532.01.T01

MNLWSDDNSSVMEAFMTSSDLSTLWPPAPPSQPPQTTTGFNQDTLQQRLQALIEGAKEVWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKTKAKKSKVTSPAEQEHRRKVLRELNSLISGNPVTEESPVDEEVTDTEWFFLVSMTQSFVNGTGLPGQAYYNSAPVWLTGAENLALSACERARQGQEHGIQTLACIPSADGVLELGSTELIYQNNDLMNKVKMLFNFNNNFDFGSSWQLGNSAHHGENDPSSIWINDPEARDSVDNNSLVTTTTTAATNASISIPSHQQHQQQNNNNNQGLSVSVTKTMQFETPGSSTLTEVPSVVHVSSKQNNQSFFSKEMNLSDYGGGNNQQRLLKPESGEILCFGESKKSSYVANNGNSNSNFFSGQSQLVSVAEENNNGNGNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPGASNLKFSGGTGGGDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESNKDGLEKQLDAMKNEIQKINENQSHQPPQQQQQQQPVPNKPSSNQALIDLDIDVKIIGWDAMIRVQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ*