AlfalfaGEDB | MsG0780037859.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037859.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037859.01.T01	NP_068729.1	71.569	102	29	0	1	102	587	688	1.33E-42	158

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037859.01.T01	P15629	71.569	102	29	0	1	102	587	688	1.65E-45	158

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037859.01.T01	A0A4D6U452	71.569	102	29	0	1	102	587	688	6.35e-43	158

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047797.01	MsG0780037859.01	0.826820	2.198737e-54	2.084713e-51
MsG0180000091.01	MsG0780037859.01	0.809012	2.334862e-50	1.355301e-47
MsG0180000154.01	MsG0780037859.01	0.816979	4.182009e-52	3.007749e-49
MsG0180000470.01	MsG0780037859.01	0.854220	1.423396e-61	3.156605e-58
MsG0180000526.01	MsG0780037859.01	0.813658	2.290018e-51	1.504422e-48
MsG0180000555.01	MsG0780037859.01	0.800503	1.397809e-48	6.519208e-46
MsG0180000702.01	MsG0780037859.01	0.807369	5.228039e-50	2.906667e-47
MsG0180000821.01	MsG0780037859.01	0.809277	2.049276e-50	1.198040e-47
MsG0180000822.01	MsG0780037859.01	0.806661	7.379832e-50	4.028299e-47
MsG0180001971.01	MsG0780037859.01	0.810172	1.315645e-50	7.875131e-48
MsG0180002894.01	MsG0780037859.01	0.806746	7.080633e-50	3.873652e-47
MsG0180004264.01	MsG0780037859.01	0.815088	1.105921e-51	7.551690e-49
MsG0180004388.01	MsG0780037859.01	0.803118	4.061356e-49	2.024126e-46
MsG0180004465.01	MsG0780037859.01	0.801761	7.731346e-49	3.722298e-46
MsG0180004765.01	MsG0780037859.01	0.808062	3.723778e-50	2.108190e-47
MsG0180005185.01	MsG0780037859.01	0.801397	9.181884e-49	4.380225e-46
MsG0180005507.01	MsG0780037859.01	0.816183	6.306120e-52	4.437422e-49
MsG0180005944.01	MsG0780037859.01	0.800049	1.729546e-48	7.974035e-46
MsG0280006375.01	MsG0780037859.01	0.804359	2.243311e-49	1.154327e-46
MsG0280010614.01	MsG0780037859.01	0.801893	7.263768e-49	3.509246e-46
MsG0280011163.01	MsG0780037859.01	0.830413	2.979056e-55	3.136325e-52
MsG0380011494.01	MsG0780037859.01	0.806595	7.621791e-50	4.153371e-47
MsG0380011663.01	MsG0780037859.01	0.815428	9.291449e-52	6.404348e-49
MsG0380014288.01	MsG0780037859.01	0.800832	1.197564e-48	5.632279e-46
MsG0380014573.01	MsG0780037859.01	0.836593	8.544743e-57	1.081782e-53
MsG0380014894.01	MsG0780037859.01	0.836151	1.107202e-56	1.383354e-53
MsG0380014902.01	MsG0780037859.01	0.808836	2.546876e-50	1.471403e-47
MsG0680032460.01	MsG0780037859.01	-0.801229	9.936884e-49	4.720537e-46
MsG0680032801.01	MsG0780037859.01	0.812211	4.751898e-51	3.003000e-48
MsG0680032996.01	MsG0780037859.01	0.814430	1.546786e-51	1.037684e-48
MsG0680034753.01	MsG0780037859.01	0.806242	9.047430e-50	4.886380e-47
MsG0680035123.01	MsG0780037859.01	0.817852	2.659832e-52	1.959177e-49
MsG0680035444.01	MsG0780037859.01	0.830314	3.149596e-55	3.306314e-52
MsG0680035445.01	MsG0780037859.01	0.802699	4.957001e-49	2.444423e-46
MsG0680035455.01	MsG0780037859.01	0.818208	2.209770e-52	1.643605e-49
MsG0480018640.01	MsG0780037859.01	0.805049	1.610041e-49	8.433337e-47
MsG0480019435.01	MsG0780037859.01	0.826028	3.396735e-54	3.148567e-51
MsG0480019970.01	MsG0780037859.01	0.810388	1.181753e-50	7.113687e-48
MsG0480020167.01	MsG0780037859.01	0.802632	5.115578e-49	2.518310e-46
MsG0480020202.01	MsG0780037859.01	0.803434	3.492814e-49	1.755014e-46
MsG0480020449.01	MsG0780037859.01	0.805750	1.148266e-49	6.124225e-47
MsG0480020964.01	MsG0780037859.01	0.805939	1.047589e-49	5.614331e-47
MsG0480021536.01	MsG0780037859.01	0.806852	6.727304e-50	3.690457e-47
MsG0480021784.01	MsG0780037859.01	0.800940	1.138414e-48	5.368896e-46
MsG0480021927.01	MsG0780037859.01	0.816906	4.342515e-52	3.116721e-49
MsG0480022533.01	MsG0780037859.01	0.819209	1.309966e-52	1.001640e-49
MsG0480022575.01	MsG0780037859.01	0.830767	2.439280e-55	2.595055e-52
MsG0480023248.01	MsG0780037859.01	0.829594	4.717991e-55	4.850923e-52
MsG0480023654.01	MsG0780037859.01	0.810687	1.018464e-50	6.180178e-48
MsG0480023670.01	MsG0780037859.01	0.804054	2.597231e-49	1.326034e-46
MsG0580024114.01	MsG0780037859.01	0.816548	5.225997e-52	3.714013e-49
MsG0580024305.01	MsG0780037859.01	0.805778	1.132881e-49	6.046322e-47
MsG0580024363.01	MsG0780037859.01	-0.833037	6.711502e-56	7.637344e-53
MsG0580024433.01	MsG0780037859.01	0.801621	8.257463e-49	3.961594e-46
MsG0580024690.01	MsG0780037859.01	0.840161	1.027071e-57	1.450626e-54
MsG0580024853.01	MsG0780037859.01	0.803078	4.138253e-49	2.060336e-46
MsG0580025008.01	MsG0780037859.01	0.806279	8.887485e-50	4.804352e-47
MsG0580025532.01	MsG0780037859.01	0.803114	4.068528e-49	2.027497e-46
MsG0580025555.01	MsG0780037859.01	0.805762	1.141299e-49	6.088955e-47
MsG0380015877.01	MsG0780037859.01	0.827593	1.435809e-54	1.392256e-51
MsG0380015878.01	MsG0780037859.01	0.834294	3.256444e-56	3.848120e-53
MsG0380016859.01	MsG0780037859.01	0.808555	2.924443e-50	1.677219e-47
MsG0380016910.01	MsG0780037859.01	0.821265	4.425114e-53	3.582610e-50
MsG0380017220.01	MsG0780037859.01	0.806814	6.852475e-50	3.755453e-47
MsG0380017233.01	MsG0780037859.01	0.800701	1.273602e-48	5.969812e-46
MsG0480018251.01	MsG0780037859.01	0.800994	1.109931e-48	5.242006e-46
MsG0480018321.01	MsG0780037859.01	0.805175	1.515284e-49	7.962801e-47
MsG0580027152.01	MsG0780037859.01	0.802389	5.743057e-49	2.809841e-46
MsG0580027401.01	MsG0780037859.01	0.806845	6.748534e-50	3.701506e-47
MsG0580027833.01	MsG0780037859.01	0.831255	1.851471e-55	1.998103e-52
MsG0580028527.01	MsG0780037859.01	0.807428	5.080135e-50	2.828820e-47
MsG0580029008.01	MsG0780037859.01	0.814073	1.854702e-51	1.232268e-48
MsG0580029554.01	MsG0780037859.01	0.801832	7.475374e-49	3.605755e-46
MsG0580029737.01	MsG0780037859.01	0.804464	2.133057e-49	1.100539e-46
MsG0680030629.01	MsG0780037859.01	0.841671	4.125444e-58	6.105536e-55
MsG0680030694.01	MsG0780037859.01	0.815800	7.677564e-52	5.346341e-49
MsG0280006770.01	MsG0780037859.01	0.812059	5.129663e-51	3.228111e-48
MsG0280007529.01	MsG0780037859.01	0.808752	2.654568e-50	1.530285e-47
MsG0280007547.01	MsG0780037859.01	0.833792	4.350035e-56	5.063365e-53
MsG0280007826.01	MsG0780037859.01	0.831829	1.337274e-55	1.468265e-52
MsG0280008073.01	MsG0780037859.01	0.822124	2.800853e-53	2.323401e-50
MsG0280008270.01	MsG0780037859.01	0.805225	1.479327e-49	7.783602e-47
MsG0280008615.01	MsG0780037859.01	0.804722	1.884722e-49	9.789835e-47
MsG0280010378.01	MsG0780037859.01	0.816710	4.805638e-52	3.430560e-49
MsG0280010443.01	MsG0780037859.01	0.831290	1.814854e-55	1.960697e-52
MsG0680035844.01	MsG0780037859.01	0.840473	8.511986e-58	1.213749e-54
MsG0780035948.01	MsG0780037859.01	0.803685	3.098319e-49	1.566866e-46
MsG0780036630.01	MsG0780037859.01	0.801395	9.186623e-49	4.382385e-46
MsG0780037859.01	MsG0780038401.01	0.827221	1.763144e-54	1.691427e-51
MsG0780037859.01	MsG0780038825.01	0.808154	3.560599e-50	2.020777e-47
MsG0780037859.01	MsG0780039252.01	0.814936	1.195089e-51	8.127088e-49
MsG0780037859.01	MsG0780040576.01	-0.803690	3.090561e-49	1.563182e-46
MsG0780037859.01	MsG0780040704.01	0.803346	3.642188e-49	1.825916e-46
MsG0780037859.01	MsG0780040726.01	0.824489	7.852872e-54	6.965921e-51
MsG0780037859.01	MsG0780041456.01	0.802630	5.121797e-49	2.521184e-46
MsG0780037859.01	MsG0780041485.01	0.800151	1.648644e-48	7.620729e-46
MsG0780037859.01	MsG0880042053.01	0.801906	7.217656e-49	3.488030e-46
MsG0780037859.01	MsG0880042611.01	0.804903	1.727762e-49	9.016811e-47
MsG0780037859.01	MsG0880042656.01	0.815680	8.166011e-52	5.667761e-49
MsG0780037859.01	MsG0880044079.01	0.805038	1.619025e-49	8.477836e-47
MsG0780037859.01	MsG0880044174.01	0.807451	5.022010e-50	2.798221e-47
MsG0780037859.01	MsG0880044573.01	0.808687	2.740645e-50	1.577172e-47
MsG0780037859.01	MsG0880044574.01	0.811596	6.467186e-51	4.019777e-48
MsG0780037859.01	MsG0880045314.01	0.811626	6.371556e-51	3.963479e-48
MsG0780037859.01	MsG0880045590.01	0.814054	1.873098e-51	1.243782e-48
MsG0780037859.01	MsG0880045639.01	0.807065	6.063734e-50	3.344744e-47
MsG0780037859.01	MsG0880045895.01	0.812223	4.723884e-51	2.986337e-48
MsG0780037859.01	MsG0880046020.01	0.802181	6.337649e-49	3.084125e-46
MsG0780037859.01	MsG0880046967.01	0.802045	6.757863e-49	3.277353e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 13 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAAGTATCTTACAGGTTTC+TGG	0.108284	7:-34828230	MsG0780037859.01.T01:CDS
TTGCTCTGTAAATACATTTC+AGG	0.198100	7:-34828375	MsG0780037859.01.T01:CDS
ACAGATTCCAAGTATCTTAC+AGG	0.284922	7:-34828237	MsG0780037859.01.T01:CDS
GTGTTTCCAGTTCAGAAATA+TGG	0.288560	7:+34828325	None:intergenic
CCAGAAACCTGTAAGATACT+TGG	0.375003	7:+34828230	None:intergenic
CGAGAATGGAGCAAACAATA+AGG	0.379884	7:-34828081	None:intergenic
TAATTAGTCTACCTTGTCTA+TGG	0.409346	7:+34828187	None:intergenic
AAGATACCATATTTCTGAAC+TGG	0.412021	7:-34828331	MsG0780037859.01.T01:CDS
GACAAGGTAGACTAATTAGA+TGG	0.447879	7:-34828182	MsG0780037859.01.T01:CDS
TTATGTATTGAATGTATGGT+TGG	0.512093	7:+34828139	None:intergenic
CAGATACACTCACTCGAGAA+TGG	0.515785	7:-34828095	MsG0780037859.01.T01:CDS
TATTGAATGTATGGTTGGAA+TGG	0.575495	7:+34828144	None:intergenic
ATTAAAGCTGACCATAGACA+AGG	0.678257	7:-34828198	MsG0780037859.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GATTTTATGTATTGAATGTA+TGG	+	Chr7:34828323-34828342	None:intergenic	20.0%
!	GTTCGTAATAAAAATCTTGA+TGG	+	Chr7:34828200-34828219	None:intergenic	25.0%
!	TTATGTATTGAATGTATGGT+TGG	+	Chr7:34828319-34828338	None:intergenic	25.0%
	TATTGAATGTATGGTTGGAA+TGG	+	Chr7:34828314-34828333	None:intergenic	30.0%
!	AAGATACCATATTTCTGAAC+TGG	-	Chr7:34828124-34828143	MsG0780037859.01.T01:CDS	30.0%
!	TAATTAGTCTACCTTGTCTA+TGG	+	Chr7:34828271-34828290	None:intergenic	30.0%
	ACAGATTCCAAGTATCTTAC+AGG	-	Chr7:34828218-34828237	MsG0780037859.01.T01:CDS	35.0%
	ATTAAAGCTGACCATAGACA+AGG	-	Chr7:34828257-34828276	MsG0780037859.01.T01:CDS	35.0%
	GACAAGGTAGACTAATTAGA+TGG	-	Chr7:34828273-34828292	MsG0780037859.01.T01:CDS	35.0%
	GTGTTTCCAGTTCAGAAATA+TGG	+	Chr7:34828133-34828152	None:intergenic	35.0%
	CCAAGTATCTTACAGGTTTC+TGG	-	Chr7:34828225-34828244	MsG0780037859.01.T01:CDS	40.0%
	CCAGAAACCTGTAAGATACT+TGG	+	Chr7:34828228-34828247	None:intergenic	40.0%
	CAGATACACTCACTCGAGAA+TGG	-	Chr7:34828360-34828379	MsG0780037859.01.T01:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	34828083	34828394	34828083	ID=MsG0780037859.01;Name=MsG0780037859.01
Chr7	mRNA	34828083	34828394	34828083	ID=MsG0780037859.01.T01;Parent=MsG0780037859.01;Name=MsG0780037859.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|103
Chr7	exon	34828083	34828394	34828083	ID=MsG0780037859.01.T01:exon:15951;Parent=MsG0780037859.01.T01
Chr7	CDS	34828083	34828394	34828083	ID=MsG0780037859.01.T01:cds;Parent=MsG0780037859.01.T01

Gene Sequence	>MsG0780037859.01.T01 CTCTGTAAATACATTTCAGGATCTTTTACAGATACTGAGACAAGATACCATATTTCTGAACTGGAAACACTATCTTGTGTTAAAGTCTTAGAAAAACATCAAATTGAATTACTTCCATCAAGATTTTTATTACGAACAGATTCCAAGTATCTTACAGGTTTCTGGAAATACAAAATTAAAGCTGACCATAGACAAGGTAGACTAATTAGATGGCAAATGAAGTTACAACCATTCCAACCATACATTCAATACATAAAATCTGAACAAAACAGTTTTGCAGATACACTCACTCGAGAATGGAGCAAACAATAA
Protein sequence	>MsG0780037859.01.T01 LCKYISGSFTDTETRYHISELETLSCVKVLEKHQIELLPSRFLLRTDSKYLTGFWKYKIKADHRQGRLIRWQMKLQPFQPYIQYIKSEQNSFADTLTREWSKQ*