AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008590.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008590.01.T01 MTR_2g044910 92.823 209 12 2 1 208 1 207 1.56e-138 386
MsG0280008590.01.T01 MTR_2g044910 92.771 166 10 1 43 208 1 164 5.59e-110 312
MsG0280008590.01.T01 MTR_2g044910 84.615 156 16 4 1 153 1 151 3.31e-84 247
MsG0280008590.01.T01 MTR_4g124360 58.209 134 48 3 37 167 25 153 4.73e-43 143
MsG0280008590.01.T01 MTR_4g124360 58.088 136 48 4 51 183 1 130 1.43e-39 132
MsG0280008590.01.T01 MTR_5g013515 33.846 130 55 4 56 175 13 121 1.79e-15 70.5
MsG0280008590.01.T01 MTR_2g042900 31.250 128 65 3 57 167 112 233 5.62e-14 68.9
MsG0280008590.01.T01 MTR_5g013530 29.825 114 63 2 57 170 22 118 5.05e-12 61.6
MsG0280008590.01.T01 MTR_4g124960 32.231 121 45 4 49 167 91 176 6.59e-12 62.4
MsG0280008590.01.T01 MTR_5g013530 29.825 114 63 2 57 170 44 140 1.22e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008590.01.T01 AT5G20900 54.237 118 42 5 57 170 57 166 1.42e-30 111
MsG0280008590.01.T01 AT3G43440 38.760 129 53 4 56 182 130 234 7.06e-15 71.2
MsG0280008590.01.T01 AT3G43440 36.154 130 57 4 55 182 43 148 2.79e-14 67.8
MsG0280008590.01.T01 AT1G74950 35.484 124 51 3 58 167 120 228 3.78e-13 66.6
MsG0280008590.01.T01 AT1G19180 34.746 118 61 4 53 167 56 160 2.35e-12 63.5
MsG0280008590.01.T01 AT1G19180 34.746 118 61 4 53 167 122 226 4.40e-12 63.5
MsG0280008590.01.T01 AT1G19180 34.746 118 61 4 53 167 122 226 4.40e-12 63.5

Find 55 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAGAAGAGAATTATTTA+AGG 0.202725 2:-34426277 None:intergenic
CAGCTTACCATCTTCTATAA+TGG 0.263317 2:+34428852 MsG0280008590.01.T01:CDS
TAATTCTCTTCTTTCAGTTT+TGG 0.266561 2:+34426284 MsG0280008590.01.T01:five_prime_UTR
TTCTTTCACCTGTTCCTTCA+AGG 0.283604 2:+34429104 MsG0280008590.01.T01:CDS
GAATCTTCTATTGCTGTTGA+TGG 0.327998 2:+34426382 MsG0280008590.01.T01:CDS
TCCTTCATTGAAACCGAATC+TGG 0.348326 2:-34429558 None:intergenic
TTGAGCAGAATTCTAGTGTT+TGG 0.362255 2:+34429617 MsG0280008590.01.T01:exon
TTTAGGTCAATGCCAGCATC+TGG 0.377821 2:+34428801 MsG0280008590.01.T01:intron
TGCTGACAATTCGCCAGATT+CGG 0.379407 2:+34429545 MsG0280008590.01.T01:CDS
TTATCATTTATGTGTTCTTT+CGG 0.382375 2:+34429640 MsG0280008590.01.T01:three_prime_UTR
AGTGAATGTCTGCGTGCTAT+TGG 0.383673 2:-34429340 None:intergenic
CTGCAGATAGAATTCTTTGC+AGG 0.395317 2:-34429184 None:intergenic
TGAGTTGTATTAGCAATCAT+TGG 0.398568 2:-34428831 None:intergenic
AGCTTACCATCTTCTATAAT+GGG 0.398580 2:+34428853 MsG0280008590.01.T01:CDS
GAAAGAAGAGAATTATTTAA+GGG 0.411915 2:-34426276 None:intergenic
GCCAGATTCGGTTTCAATGA+AGG 0.420770 2:+34429557 MsG0280008590.01.T01:CDS
ATTGGATTCGTTCCAGATGC+TGG 0.436562 2:-34428813 None:intergenic
AATGGATGGTGTTACTGTTA+AGG 0.443386 2:+34426333 MsG0280008590.01.T01:exon
ACTTCAAAGTTGCATCTCTC+TGG 0.448576 2:+34429769 MsG0280008590.01.T01:three_prime_UTR
GCTAGTTCCAACATGGTTGA+GGG 0.452791 2:+34426406 MsG0280008590.01.T01:CDS
ATTTATGTGTTCTTTCGGTA+AGG 0.456656 2:+34429645 MsG0280008590.01.T01:three_prime_UTR
ACAGGTGAAAGAACGGGAAC+GGG 0.457084 2:-34429094 None:intergenic
ATAGAATTCTTTGCAGGAAA+GGG 0.465810 2:-34429178 None:intergenic
ATTATCGAACATCAACTCAT+TGG 0.468245 2:-34429879 None:intergenic
CTTCTTTGTTTCACTAGACT+TGG 0.473413 2:-34429056 None:intergenic
TGATGGAATTCCTGCAGAAA+AGG 0.477638 2:+34428890 MsG0280008590.01.T01:CDS
GGGAGTATTTGTATCTATGA+TGG 0.478209 2:+34428873 MsG0280008590.01.T01:CDS
TGCTAGTTCCAACATGGTTG+AGG 0.478224 2:+34426405 MsG0280008590.01.T01:CDS
GCAGTTCCATGTGGCGAAGA+AGG 0.484372 2:-34429127 None:intergenic
TCTAGAACAGTAAACTTCTC+TGG 0.487430 2:-34426361 None:intergenic
TGTGGCGAAGAAGGCCTTGA+AGG 0.491077 2:-34429118 None:intergenic
CTGCAAAGAATTCTATCTGC+AGG 0.491501 2:+34429185 MsG0280008590.01.T01:CDS
GAAGGAACAGGTGAAAGAAC+GGG 0.502028 2:-34429100 None:intergenic
AATACTCCCATTATAGAAGA+TGG 0.513403 2:-34428859 None:intergenic
TTTATGTGTTCTTTCGGTAA+GGG 0.515174 2:+34429646 MsG0280008590.01.T01:three_prime_UTR
TTCTTCAGAAGCGTCGAGAC+AGG 0.516859 2:+34429371 MsG0280008590.01.T01:CDS
GATAGAATTCTTTGCAGGAA+AGG 0.520134 2:-34429179 None:intergenic
GAAGAAGGCCTTGAAGGAAC+AGG 0.524051 2:-34429112 None:intergenic
GCTCAAGATGCAGATATAGT+TGG 0.526009 2:-34429600 None:intergenic
TCAAGGCCTTCTTCGCCACA+TGG 0.540794 2:+34429121 MsG0280008590.01.T01:CDS
AATTCTATCTGCAGGCTGCA+AGG 0.555717 2:+34429193 MsG0280008590.01.T01:CDS
TGATAATATCGCTTCACCAC+AGG 0.571663 2:+34429150 MsG0280008590.01.T01:CDS
TGAAGGAACAGGTGAAAGAA+CGG 0.572032 2:-34429101 None:intergenic
AACAGGTGAAAGAACGGGAA+CGG 0.573715 2:-34429095 None:intergenic
CATTGACCCCTCAACCATGT+TGG 0.577350 2:-34426413 None:intergenic
GTTGGCTGAAATTCCTCCCG+TGG 0.585328 2:-34429582 None:intergenic
AACAAAGGTAGCTGACAACA+TGG 0.591184 2:+34429509 MsG0280008590.01.T01:CDS
GGTTTCAATGAAGGAACCAC+GGG 0.597401 2:+34429566 MsG0280008590.01.T01:CDS
TTCAATGAAGGAACCACGGG+AGG 0.608188 2:+34429569 MsG0280008590.01.T01:CDS
GACAACATGGAGAACAACTT+CGG 0.616517 2:+34429522 MsG0280008590.01.T01:CDS
CGGTTTCAATGAAGGAACCA+CGG 0.627139 2:+34429565 MsG0280008590.01.T01:CDS
GCAGGAAAGGGATGTGCCTG+TGG 0.648722 2:-34429166 None:intergenic
TGATGGTGCTAGTTCCAACA+TGG 0.653805 2:+34426399 MsG0280008590.01.T01:CDS
CTAGTTCCAACATGGTTGAG+GGG 0.662811 2:+34426407 MsG0280008590.01.T01:CDS
ATATTATCAGCAGTTCCATG+TGG 0.739266 2:-34429136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAACTTTGTAAAATTTT+TGG + Chr2:34426242-34426261 MsG0280008590.01.T01:five_prime_UTR 10.0%
!!! ATTTTAATTCAAAAAACTAA+AGG - Chr2:34426734-34426753 None:intergenic 10.0%
!! ATCTTAGTTATTTAAAAAGT+TGG - Chr2:34428040-34428059 None:intergenic 15.0%
!! ATAATTTATGTTTGTACTAC+AGG + Chr2:34429451-34429470 MsG0280008590.01.T01:intron 20.0%
!! ATACAAATTGATACCATTTA+AGG - Chr2:34426688-34426707 None:intergenic 20.0%
!! ATACACTGATACATATATTT+AGG + Chr2:34428544-34428563 MsG0280008590.01.T01:intron 20.0%
!! ATCAAACAGAAACAAAAAAA+GGG - Chr2:34426556-34426575 None:intergenic 20.0%
!! GAAAGAAGAGAATTATTTAA+GGG - Chr2:34426279-34426298 None:intergenic 20.0%
!! TAGTTGAAGACATAATTAAT+AGG - Chr2:34429229-34429248 None:intergenic 20.0%
!! TGAAAGAAGAGAATTATTTA+AGG - Chr2:34426280-34426299 None:intergenic 20.0%
!! TTATCATTTATGTGTTCTTT+CGG + Chr2:34429640-34429659 MsG0280008590.01.T01:three_prime_UTR 20.0%
!! TTGTTAAGGAATAGAATAAA+GGG + Chr2:34427359-34427378 MsG0280008590.01.T01:intron 20.0%
!!! AAACGAAATTTTCGATTAAA+TGG + Chr2:34426826-34426845 MsG0280008590.01.T01:intron 20.0%
!!! ACTAGTTGGTTATTTAATTT+TGG + Chr2:34426587-34426606 MsG0280008590.01.T01:intron 20.0%
!!! ACTGTATTATTTTCTCTTTT+AGG + Chr2:34428784-34428803 MsG0280008590.01.T01:intron 20.0%
!!! TAATCAAAAACATGCTTTTT+TGG - Chr2:34426478-34426497 None:intergenic 20.0%
! AAAATTGTTCTAATGTGTTG+AGG + Chr2:34426749-34426768 MsG0280008590.01.T01:intron 25.0%
! AAATATTACCATAGCAAATC+CGG - Chr2:34427200-34427219 None:intergenic 25.0%
! AAATTGTTCTAATGTGTTGA+GGG + Chr2:34426750-34426769 MsG0280008590.01.T01:intron 25.0%
! AAGAACTCAACGATTAATTA+TGG - Chr2:34427152-34427171 None:intergenic 25.0%
! AATGGAATAAGTCATTTGAA+TGG - Chr2:34428343-34428362 None:intergenic 25.0%
! ACTTAATTATACTGATCTGA+CGG + Chr2:34426783-34426802 MsG0280008590.01.T01:intron 25.0%
! AGTGTATATGCTACATTAAT+GGG - Chr2:34428531-34428550 None:intergenic 25.0%
! ATATGAAAATCGAAAAGAGT+AGG - Chr2:34427549-34427568 None:intergenic 25.0%
! ATCTACTTAAATATTACGTG+CGG - Chr2:34427022-34427041 None:intergenic 25.0%
! CATCAAACAGAAACAAAAAA+AGG - Chr2:34426557-34426576 None:intergenic 25.0%
! GTTGTTAAGGAATAGAATAA+AGG + Chr2:34427358-34427377 MsG0280008590.01.T01:intron 25.0%
! TGATTCATTGCATAATAGAA+CGG + Chr2:34427078-34427097 MsG0280008590.01.T01:intron 25.0%
! TTAGTAGTTAAGAGTTGTTA+AGG + Chr2:34427345-34427364 MsG0280008590.01.T01:intron 25.0%
! TTCTATTATGCAATGAATCA+GGG - Chr2:34427078-34427097 None:intergenic 25.0%
!! AACTATACTTGTTACTTCTT+TGG + Chr2:34427272-34427291 MsG0280008590.01.T01:intron 25.0%
!! ACCATTTAAGGTACAAAAAT+TGG - Chr2:34426676-34426695 None:intergenic 25.0%
!! CATACACAAAATTTGAAACA+TGG - Chr2:34429410-34429429 None:intergenic 25.0%
!! TAATTCTCTTCTTTCAGTTT+TGG + Chr2:34426284-34426303 MsG0280008590.01.T01:five_prime_UTR 25.0%
!! TCCAATTTTTGTACCTTAAA+TGG + Chr2:34426672-34426691 MsG0280008590.01.T01:intron 25.0%
!!! AGATATGTCATTGTTTTTCA+TGG + Chr2:34428195-34428214 MsG0280008590.01.T01:intron 25.0%
!!! AGTCTTCATTGATTTAGAAA+AGG - Chr2:34427627-34427646 None:intergenic 25.0%
!!! ATGAAAAAGTATTAAGTCCA+AGG - Chr2:34428013-34428032 None:intergenic 25.0%
!!! CAAAGTTTTTTGAGTTTCAA+TGG - Chr2:34426233-34426252 None:intergenic 25.0%
!!! TGCATATTTTTATTGAACCT+TGG + Chr2:34427670-34427689 MsG0280008590.01.T01:intron 25.0%
!!! TGGTTCATCTAATGTTTTTA+TGG - Chr2:34426635-34426654 None:intergenic 25.0%
AAACAAAAAAAGGGTCTTGA+AGG - Chr2:34426547-34426566 None:intergenic 30.0%
AACTCTCTCTATATACTAAC+AGG + Chr2:34429000-34429019 MsG0280008590.01.T01:intron 30.0%
AATACTCCCATTATAGAAGA+TGG - Chr2:34428862-34428881 None:intergenic 30.0%
AATTGTTGAGGAGAAAAGTA+GGG - Chr2:34426927-34426946 None:intergenic 30.0%
ACGAGACATATAAATTATGG+TGG - Chr2:34429288-34429307 None:intergenic 30.0%
ACGTGAATTTCATCAACTTA+TGG - Chr2:34428278-34428297 None:intergenic 30.0%
AGAGTAGTTAGTTAGCTATT+TGG + Chr2:34427414-34427433 MsG0280008590.01.T01:intron 30.0%
AGCTTACCATCTTCTATAAT+GGG + Chr2:34428853-34428872 MsG0280008590.01.T01:CDS 30.0%
AGTAGATCAAAGAAAACTGT+AGG - Chr2:34426857-34426876 None:intergenic 30.0%
AGTTAGTTAGCTATTTGGTT+AGG + Chr2:34427419-34427438 MsG0280008590.01.T01:intron 30.0%
ATAGAATTCTTTGCAGGAAA+GGG - Chr2:34429181-34429200 None:intergenic 30.0%
ATTATCGAACATCAACTCAT+TGG - Chr2:34429882-34429901 None:intergenic 30.0%
ATTTATGTGTTCTTTCGGTA+AGG + Chr2:34429645-34429664 MsG0280008590.01.T01:three_prime_UTR 30.0%
CACACGAGACATATAAATTA+TGG - Chr2:34429291-34429310 None:intergenic 30.0%
CAGTGTATATGCTACATTAA+TGG - Chr2:34428532-34428551 None:intergenic 30.0%
CATAATTTATATGTCTCGTG+TGG + Chr2:34429289-34429308 MsG0280008590.01.T01:intron 30.0%
GATGAATATTACTCACTAGT+TGG + Chr2:34426573-34426592 MsG0280008590.01.T01:intron 30.0%
GTGTATAACCAAATTGAACA+GGG + Chr2:34428296-34428315 MsG0280008590.01.T01:intron 30.0%
GTGTATATGCTACATTAATG+GGG - Chr2:34428530-34428549 None:intergenic 30.0%
GTTCTATTATGCAATGAATC+AGG - Chr2:34427079-34427098 None:intergenic 30.0%
TAATTTCGCTTATGACAGAA+AGG - Chr2:34427716-34427735 None:intergenic 30.0%
TCTCGCTGAAAAATATGTAA+TGG - Chr2:34428361-34428380 None:intergenic 30.0%
TCTGTTCTGTATGAAATCAT+TGG + Chr2:34428157-34428176 MsG0280008590.01.T01:intron 30.0%
TGAGTTGTATTAGCAATCAT+TGG - Chr2:34428834-34428853 None:intergenic 30.0%
TGGATTGCTAACATTATCAT+AGG + Chr2:34427601-34427620 MsG0280008590.01.T01:intron 30.0%
TGGTCTATGTCAGATATAAT+AGG - Chr2:34427853-34427872 None:intergenic 30.0%
TTATCTTCTTAGTTGAGAAC+CGG + Chr2:34427178-34427197 MsG0280008590.01.T01:intron 30.0%
TTATGTTTGTACTACAGGTT+GGG + Chr2:34429456-34429475 MsG0280008590.01.T01:intron 30.0%
TTCAAAGAACTTAGTCATCA+AGG + Chr2:34428659-34428678 MsG0280008590.01.T01:intron 30.0%
TTGTAGGGTTCTTCAAAAAA+TGG + Chr2:34426315-34426334 MsG0280008590.01.T01:exon 30.0%
TTTATGTGTTCTTTCGGTAA+GGG + Chr2:34429646-34429665 MsG0280008590.01.T01:three_prime_UTR 30.0%
TTTATGTTTGTACTACAGGT+TGG + Chr2:34429455-34429474 MsG0280008590.01.T01:intron 30.0%
! ATAGATAACAGGGGATATTT+TGG + Chr2:34427928-34427947 MsG0280008590.01.T01:intron 30.0%
! CTTCTTTTCAATTCAACTCT+TGG + Chr2:34427581-34427600 MsG0280008590.01.T01:intron 30.0%
! GCTTTTTGTGTTTGTTTGAA+TGG + Chr2:34428691-34428710 MsG0280008590.01.T01:intron 30.0%
! GTTGCAGATTTTTATTGAAC+TGG - Chr2:34428505-34428524 None:intergenic 30.0%
! TATACTTGTTACTTCTTTGG+TGG + Chr2:34427275-34427294 MsG0280008590.01.T01:intron 30.0%
! TGATTGAACAACAAAAGCAT+AGG + Chr2:34428094-34428113 MsG0280008590.01.T01:intron 30.0%
! TTTTTCTGAATTCTGAACCT+TGG + Chr2:34427993-34428012 MsG0280008590.01.T01:intron 30.0%
!! AGTTTTGGTGATCTATTTGT+AGG + Chr2:34426299-34426318 MsG0280008590.01.T01:five_prime_UTR 30.0%
!! CTTTGATCTACTTTTCTTAC+TGG + Chr2:34426865-34426884 MsG0280008590.01.T01:intron 30.0%
!! GTTTTGGTGATCTATTTGTA+GGG + Chr2:34426300-34426319 MsG0280008590.01.T01:five_prime_UTR 30.0%
!! TATTTTTCAGCGAGATTTTG+AGG + Chr2:34428366-34428385 MsG0280008590.01.T01:intron 30.0%
!!! TTTTGGTTTTTTGGCTTTTC+TGG + Chr2:34427945-34427964 MsG0280008590.01.T01:intron 30.0%
AGGCTTCTTCATGCATATTA+TGG + Chr2:34428386-34428405 MsG0280008590.01.T01:intron 35.0%
AGGGTTCTTCAAAAAATGGA+TGG + Chr2:34426319-34426338 MsG0280008590.01.T01:exon 35.0%
AGTAGTGACTCTATTGTGAA+AGG + Chr2:34427501-34427520 MsG0280008590.01.T01:intron 35.0%
ATATTATCAGCAGTTCCATG+TGG - Chr2:34429139-34429158 None:intergenic 35.0%
ATTTCGATTGTGACGTAACA+TGG - Chr2:34428973-34428992 None:intergenic 35.0%
CAATTGTTGAGGAGAAAAGT+AGG - Chr2:34426928-34426947 None:intergenic 35.0%
CAGCTTACCATCTTCTATAA+TGG + Chr2:34428852-34428871 MsG0280008590.01.T01:CDS 35.0%
CATTAGATGAACCATGACTA+AGG + Chr2:34426641-34426660 MsG0280008590.01.T01:intron 35.0%
CGTGTATAACCAAATTGAAC+AGG + Chr2:34428295-34428314 MsG0280008590.01.T01:intron 35.0%
GAAACAAACACCAATTGTTG+AGG - Chr2:34426939-34426958 None:intergenic 35.0%
GATAGAATTCTTTGCAGGAA+AGG - Chr2:34429182-34429201 None:intergenic 35.0%
GCTCATAGTCATTGATAAGT+GGG + Chr2:34426994-34427013 MsG0280008590.01.T01:intron 35.0%
GTAGTGACTCTATTGTGAAA+GGG + Chr2:34427502-34427521 MsG0280008590.01.T01:intron 35.0%
TAGTTGAGATCAGAATTCTG+AGG - Chr2:34427257-34427276 None:intergenic 35.0%
TGAAACACTGGAAATCTCAA+TGG - Chr2:34428123-34428142 None:intergenic 35.0%
TTGAGCAGAATTCTAGTGTT+TGG + Chr2:34429617-34429636 MsG0280008590.01.T01:exon 35.0%
TTGGTTAGGTAGAGAATACA+AGG + Chr2:34427433-34427452 MsG0280008590.01.T01:intron 35.0%
! ACTTTTGTCCCTGTTCAATT+TGG - Chr2:34428307-34428326 None:intergenic 35.0%
! CACAAAATTTGAAACATGGC+AGG - Chr2:34429406-34429425 None:intergenic 35.0%
! CTTCTTTGTTTCACTAGACT+TGG - Chr2:34429059-34429078 None:intergenic 35.0%
! GAATCTTCTATTGCTGTTGA+TGG + Chr2:34426382-34426401 MsG0280008590.01.T01:CDS 35.0%
! GTCAGATATAATAGGTGTTG+TGG - Chr2:34427845-34427864 None:intergenic 35.0%
! TCTAGAACAGTAAACTTCTC+TGG - Chr2:34426364-34426383 None:intergenic 35.0%
!! AATGGATGGTGTTACTGTTA+AGG + Chr2:34426333-34426352 MsG0280008590.01.T01:exon 35.0%
!! CTACTTTTCTCCTCAACAAT+TGG + Chr2:34426926-34426945 MsG0280008590.01.T01:intron 35.0%
!! GGGAGTATTTGTATCTATGA+TGG + Chr2:34428873-34428892 MsG0280008590.01.T01:CDS 35.0%
!! TTCCACGTTTGTGTTTTGAA+GGG + Chr2:34428479-34428498 MsG0280008590.01.T01:intron 35.0%
!! TTTCCACGTTTGTGTTTTGA+AGG + Chr2:34428478-34428497 MsG0280008590.01.T01:intron 35.0%
!!! CAGGGGATATTTTGGTTTTT+TGG + Chr2:34427936-34427955 MsG0280008590.01.T01:intron 35.0%
!!! TTGTCAGCTACCTTTGTTTT+TGG - Chr2:34429507-34429526 None:intergenic 35.0%
AACAAAGGTAGCTGACAACA+TGG + Chr2:34429509-34429528 MsG0280008590.01.T01:CDS 40.0%
ACCTTGGTATGTATCCTTCA+CGG + Chr2:34427686-34427705 MsG0280008590.01.T01:intron 40.0%
ACTTCAAAGTTGCATCTCTC+TGG + Chr2:34429769-34429788 MsG0280008590.01.T01:three_prime_UTR 40.0%
AGACCACATCACCATGTTTA+TGG + Chr2:34427867-34427886 MsG0280008590.01.T01:intron 40.0%
AGCCTAGAAAACTCAGTACA+AGG - Chr2:34428597-34428616 None:intergenic 40.0%
AGTAGGAGTCTTCTTCTTCA+AGG - Chr2:34427532-34427551 None:intergenic 40.0%
ATGCTACACAACCGTGATTA+AGG - Chr2:34428441-34428460 None:intergenic 40.0%
CATCTGATTGTACCGTAGAA+AGG - Chr2:34427303-34427322 None:intergenic 40.0%
CATCTGCAGATAGATAACAG+GGG + Chr2:34427919-34427938 MsG0280008590.01.T01:intron 40.0%
CCAACAATCCACCATAAACA+TGG - Chr2:34427881-34427900 None:intergenic 40.0%
CCATCTGCAGATAGATAACA+GGG + Chr2:34427918-34427937 MsG0280008590.01.T01:intron 40.0%
CTGCAAAGAATTCTATCTGC+AGG + Chr2:34429185-34429204 MsG0280008590.01.T01:CDS 40.0%
CTGCAGATAGAATTCTTTGC+AGG - Chr2:34429187-34429206 None:intergenic 40.0%
GACAACATGGAGAACAACTT+CGG + Chr2:34429522-34429541 MsG0280008590.01.T01:CDS 40.0%
GCAGTCAAAAACTGTTGATG+CGG + Chr2:34428415-34428434 MsG0280008590.01.T01:intron 40.0%
GCTCAAGATGCAGATATAGT+TGG - Chr2:34429603-34429622 None:intergenic 40.0%
GGAAAAGAACACCTTAGTCA+TGG - Chr2:34426655-34426674 None:intergenic 40.0%
GGCTCATAGTCATTGATAAG+TGG + Chr2:34426993-34427012 MsG0280008590.01.T01:intron 40.0%
GTACATCTCTAACAGTTGAG+TGG - Chr2:34427112-34427131 None:intergenic 40.0%
GTAGGAGTCTTCTTCTTCAA+GGG - Chr2:34427531-34427550 None:intergenic 40.0%
TATCTGCAGATGGCAGATTA+TGG - Chr2:34427911-34427930 None:intergenic 40.0%
TCATACAGAACAGAACAGAG+AGG - Chr2:34428151-34428170 None:intergenic 40.0%
TCCTTCATTGAAACCGAATC+TGG - Chr2:34429561-34429580 None:intergenic 40.0%
TCTTTGGTGGAACCTTTCTA+CGG + Chr2:34427288-34427307 MsG0280008590.01.T01:intron 40.0%
TGAAGGAACAGGTGAAAGAA+CGG - Chr2:34429104-34429123 None:intergenic 40.0%
TGATAATATCGCTTCACCAC+AGG + Chr2:34429150-34429169 MsG0280008590.01.T01:CDS 40.0%
TGATGGAATTCCTGCAGAAA+AGG + Chr2:34428890-34428909 MsG0280008590.01.T01:CDS 40.0%
TTCTTTCACCTGTTCCTTCA+AGG + Chr2:34429104-34429123 MsG0280008590.01.T01:CDS 40.0%
TTTCGTGTTTGTGTTGAGCA+TGG + Chr2:34426972-34426991 MsG0280008590.01.T01:intron 40.0%
! ATAATAGGTGTTGTGGCCTA+CGG - Chr2:34427838-34427857 None:intergenic 40.0%
! CTCCTTGTACTGAGTTTTCT+AGG + Chr2:34428592-34428611 MsG0280008590.01.T01:intron 40.0%
!! CCATGTTTATGGTGGATTGT+TGG + Chr2:34427878-34427897 MsG0280008590.01.T01:intron 40.0%
AACAGGTGAAAGAACGGGAA+CGG - Chr2:34429098-34429117 None:intergenic 45.0%
AATTCTATCTGCAGGCTGCA+AGG + Chr2:34429193-34429212 MsG0280008590.01.T01:CDS 45.0%
ACCGTGAAGGATACATACCA+AGG - Chr2:34427690-34427709 None:intergenic 45.0%
AGTGAATGTCTGCGTGCTAT+TGG - Chr2:34429343-34429362 None:intergenic 45.0%
ATTGGATTCGTTCCAGATGC+TGG - Chr2:34428816-34428835 None:intergenic 45.0%
CCACATCACCATGTTTATGG+TGG + Chr2:34427870-34427889 MsG0280008590.01.T01:intron 45.0%
CCCTGTTATCTATCTGCAGA+TGG - Chr2:34427921-34427940 None:intergenic 45.0%
CGGTTTCAATGAAGGAACCA+CGG + Chr2:34429565-34429584 MsG0280008590.01.T01:CDS 45.0%
CTAGTTCCAACATGGTTGAG+GGG + Chr2:34426407-34426426 MsG0280008590.01.T01:CDS 45.0%
GAAGGAACAGGTGAAAGAAC+GGG - Chr2:34429103-34429122 None:intergenic 45.0%
GCCATCTGCAGATAGATAAC+AGG + Chr2:34427917-34427936 MsG0280008590.01.T01:intron 45.0%
GCTAGTTCCAACATGGTTGA+GGG + Chr2:34426406-34426425 MsG0280008590.01.T01:CDS 45.0%
GGTTTCAATGAAGGAACCAC+GGG + Chr2:34429566-34429585 MsG0280008590.01.T01:CDS 45.0%
GTTAGAGATGTACGCGCAAT+TGG + Chr2:34427119-34427138 MsG0280008590.01.T01:intron 45.0%
TCCTTCCTCGCCAAAAACAA+AGG + Chr2:34429494-34429513 MsG0280008590.01.T01:CDS 45.0%
TGCTAGTTCCAACATGGTTG+AGG + Chr2:34426405-34426424 MsG0280008590.01.T01:CDS 45.0%
TGCTGACAATTCGCCAGATT+CGG + Chr2:34429545-34429564 MsG0280008590.01.T01:CDS 45.0%
TGTTGATGCGGCCTTAATCA+CGG + Chr2:34428427-34428446 MsG0280008590.01.T01:intron 45.0%
TTTAGGTCAATGCCAGCATC+TGG + Chr2:34428801-34428820 MsG0280008590.01.T01:intron 45.0%
! AGAGAGGTATGCTGAAACAC+TGG - Chr2:34428135-34428154 None:intergenic 45.0%
! CCACCATAAACATGGTGATG+TGG - Chr2:34427873-34427892 None:intergenic 45.0%
! GCCAGATTCGGTTTCAATGA+AGG + Chr2:34429557-34429576 MsG0280008590.01.T01:CDS 45.0%
! TGATGGTGCTAGTTCCAACA+TGG + Chr2:34426399-34426418 MsG0280008590.01.T01:CDS 45.0%
!! GTTGAGAACCGGATTTGCTA+TGG + Chr2:34427189-34427208 MsG0280008590.01.T01:intron 45.0%
!!! ACCTTTGTTTTTGGCGAGGA+AGG - Chr2:34429498-34429517 None:intergenic 45.0%
!!! AGCTACCTTTGTTTTTGGCG+AGG - Chr2:34429502-34429521 None:intergenic 45.0%
!!! GTTTTTGGCGAGGAAGGATA+GGG - Chr2:34429492-34429511 None:intergenic 45.0%
!!! TGTTTTTGGCGAGGAAGGAT+AGG - Chr2:34429493-34429512 None:intergenic 45.0%
ACAGGTGAAAGAACGGGAAC+GGG - Chr2:34429097-34429116 None:intergenic 50.0%
CATTGACCCCTCAACCATGT+TGG - Chr2:34426416-34426435 None:intergenic 50.0%
CTGCAGATGGCAGATTATGG+TGG - Chr2:34427908-34427927 None:intergenic 50.0%
GAAGAAGGCCTTGAAGGAAC+AGG - Chr2:34429115-34429134 None:intergenic 50.0%
GACAGAAAGGTCAACCGTGA+AGG - Chr2:34427703-34427722 None:intergenic 50.0%
GGCCCTTCAAAACACAAACG+TGG - Chr2:34428484-34428503 None:intergenic 50.0%
TTCAATGAAGGAACCACGGG+AGG + Chr2:34429569-34429588 MsG0280008590.01.T01:CDS 50.0%
!! TTCTTCAGAAGCGTCGAGAC+AGG + Chr2:34429371-34429390 MsG0280008590.01.T01:CDS 50.0%
CAGTGTAGCGTAGCTGCGTA+GGG - Chr2:34428919-34428938 None:intergenic 55.0%
GCAGTTCCATGTGGCGAAGA+AGG - Chr2:34429130-34429149 None:intergenic 55.0%
GTTGGCTGAAATTCCTCCCG+TGG - Chr2:34429585-34429604 None:intergenic 55.0%
TCAAGGCCTTCTTCGCCACA+TGG + Chr2:34429121-34429140 MsG0280008590.01.T01:CDS 55.0%
TCAGTGTAGCGTAGCTGCGT+AGG - Chr2:34428920-34428939 None:intergenic 55.0%
TGTGGCGAAGAAGGCCTTGA+AGG - Chr2:34429121-34429140 None:intergenic 55.0%
! CGTAGGGCTACCTTTTCTGC+AGG - Chr2:34428903-34428922 None:intergenic 55.0%
GCAGGAAAGGGATGTGCCTG+TGG - Chr2:34429169-34429188 None:intergenic 60.0%
TAGCTGCCACGGCACATTGG+TGG - Chr2:34427815-34427834 None:intergenic 60.0%
TGAGCACCACCAATGTGCCG+TGG + Chr2:34427806-34427825 MsG0280008590.01.T01:intron 60.0%
CGGTAGCTGCCACGGCACAT+TGG - Chr2:34427818-34427837 None:intergenic 65.0%
GTGGCCTACGGTAGCTGCCA+CGG - Chr2:34427826-34427845 None:intergenic 65.0%
TGTGCCGTGGCAGCTACCGT+AGG + Chr2:34427819-34427838 MsG0280008590.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 34426217 34429911 34426217 ID=MsG0280008590.01;Name=MsG0280008590.01
Chr2 mRNA 34426217 34429911 34426217 ID=MsG0280008590.01.T01;Parent=MsG0280008590.01;Name=MsG0280008590.01.T01;_AED=0.36;_eAED=0.36;_QI=117|1|1|1|1|1|5|291|208
Chr2 exon 34426217 34426455 34426217 ID=MsG0280008590.01.T01:exon:20365;Parent=MsG0280008590.01.T01
Chr2 exon 34428806 34428911 34428806 ID=MsG0280008590.01.T01:exon:20366;Parent=MsG0280008590.01.T01
Chr2 exon 34429022 34429214 34429022 ID=MsG0280008590.01.T01:exon:20367;Parent=MsG0280008590.01.T01
Chr2 exon 34429335 34429392 34429335 ID=MsG0280008590.01.T01:exon:20368;Parent=MsG0280008590.01.T01
Chr2 exon 34429473 34429911 34429473 ID=MsG0280008590.01.T01:exon:20369;Parent=MsG0280008590.01.T01
Chr2 five_prime_UTR 34426217 34426333 34426217 ID=MsG0280008590.01.T01:five_prime_utr;Parent=MsG0280008590.01.T01
Chr2 CDS 34426334 34426455 34426334 ID=MsG0280008590.01.T01:cds;Parent=MsG0280008590.01.T01
Chr2 CDS 34428806 34428911 34428806 ID=MsG0280008590.01.T01:cds;Parent=MsG0280008590.01.T01
Chr2 CDS 34429022 34429214 34429022 ID=MsG0280008590.01.T01:cds;Parent=MsG0280008590.01.T01
Chr2 CDS 34429335 34429392 34429335 ID=MsG0280008590.01.T01:cds;Parent=MsG0280008590.01.T01
Chr2 CDS 34429473 34429620 34429473 ID=MsG0280008590.01.T01:cds;Parent=MsG0280008590.01.T01
Chr2 three_prime_UTR 34429621 34429911 34429621 ID=MsG0280008590.01.T01:three_prime_utr;Parent=MsG0280008590.01.T01
Gene Sequence

>MsG0280008590.01.T01

ATGGATGGTGTTACTGTTAAGGTTGAGCCAGAGAAGTTTACTGTTCTAGAATCTTCTATTGCTGTTGATGGTGCTAGTTCCAACATGGTTGAGGGGTCAATGATGAATTCTTCAGCAAACAAGTCAATGCCAGCATCTGGAACGAATCCAATGATTGCTAATACAACTCAGCTTACCATCTTCTATAATGGGAGTATTTGTATCTATGATGGAATTCCTGCAGAAAAGGTGCAAGAAATAATGTGCATTGCTGCTGCTGCTGCCAAGTCTAGTGAAACAAAGAAGATTGTGAAACAATCTCCCGTTCCCGTTCTTTCACCTGTTCCTTCAAGGCCTTCTTCGCCACATGGAACTGCTGATAATATCGCTTCACCACAGGCACATCCCTTTCCTGCAAAGAATTCTATCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAATGTTTCTTCAGAAGCGTCGAGACAGGTTGGGTAGTAAAGCTCCCTATCCTTCCTCGCCAAAAACAAAGGTAGCTGACAACATGGAGAACAACTTCGGTGCTGACAATTCGCCAGATTCGGTTTCAATGAAGGAACCACGGGAGGAATTTCAGCCAACTATATCTGCATCTTGA

Protein sequence

>MsG0280008590.01.T01

MDGVTVKVEPEKFTVLESSIAVDGASSNMVEGSMMNSSANKSMPASGTNPMIANTTQLTIFYNGSICIYDGIPAEKVQEIMCIAAAAAKSSETKKIVKQSPVPVLSPVPSRPSSPHGTADNIASPQAHPFPAKNSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPKTKVADNMENNFGADNSPDSVSMKEPREEFQPTISAS*